Query 030192
Match_columns 181
No_of_seqs 124 out of 1856
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1moz_A ARL1, ADP-ribosylation 100.0 8.6E-38 2.9E-42 215.7 21.0 180 1-180 1-181 (183)
2 1zj6_A ADP-ribosylation factor 100.0 8.9E-38 3.1E-42 216.6 20.8 178 1-179 1-178 (187)
3 2x77_A ADP-ribosylation factor 100.0 7.1E-38 2.4E-42 217.4 19.9 180 1-180 3-185 (189)
4 1ksh_A ARF-like protein 2; sma 100.0 6.3E-37 2.2E-41 212.0 20.8 178 1-180 3-181 (186)
5 2b6h_A ADP-ribosylation factor 100.0 2.1E-37 7E-42 215.8 17.7 176 5-180 17-192 (192)
6 1upt_A ARL1, ADP-ribosylation 100.0 1.3E-35 4.4E-40 202.5 22.2 166 15-180 5-170 (171)
7 1r8s_A ADP-ribosylation factor 100.0 4.2E-36 1.5E-40 203.7 18.7 163 18-180 1-163 (164)
8 1fzq_A ADP-ribosylation factor 100.0 4.9E-36 1.7E-40 207.0 19.1 173 8-180 5-179 (181)
9 1m2o_B GTP-binding protein SAR 100.0 6E-35 2.1E-39 203.0 20.7 171 6-176 11-189 (190)
10 2h17_A ADP-ribosylation factor 100.0 5.2E-35 1.8E-39 201.7 18.6 164 13-176 17-180 (181)
11 1zd9_A ADP-ribosylation factor 100.0 6E-35 2.1E-39 202.6 18.7 167 14-180 19-186 (188)
12 1f6b_A SAR1; gtpases, N-termin 100.0 7.1E-35 2.4E-39 203.9 19.0 170 8-177 15-197 (198)
13 4bas_A ADP-ribosylation factor 100.0 4.5E-35 1.5E-39 204.5 17.2 170 11-180 11-190 (199)
14 4dkx_A RAS-related protein RAB 100.0 1.6E-36 5.6E-41 214.5 9.9 160 14-179 10-176 (216)
15 2h57_A ADP-ribosylation factor 100.0 7.2E-34 2.4E-38 197.4 19.4 166 14-179 18-187 (190)
16 3o47_A ADP-ribosylation factor 100.0 4.8E-34 1.6E-38 213.7 19.6 167 14-180 162-328 (329)
17 3lvq_E ARF-GAP with SH3 domain 100.0 2.2E-32 7.6E-37 215.1 20.8 166 15-180 320-485 (497)
18 3q72_A GTP-binding protein RAD 100.0 9.7E-33 3.3E-37 187.5 11.9 159 17-180 2-165 (166)
19 1ek0_A Protein (GTP-binding pr 100.0 1.3E-32 4.5E-37 187.2 10.3 163 17-180 3-170 (170)
20 3oes_A GTPase rhebl1; small GT 100.0 4.5E-32 1.5E-36 190.0 12.6 166 10-180 17-188 (201)
21 3t5g_A GTP-binding protein RHE 100.0 3.7E-32 1.3E-36 187.2 11.6 162 14-180 3-170 (181)
22 2nzj_A GTP-binding protein REM 100.0 1.9E-31 6.4E-36 182.5 13.9 160 15-179 2-169 (175)
23 3ihw_A Centg3; RAS, centaurin, 100.0 7.2E-31 2.5E-35 181.6 16.2 158 13-180 16-181 (184)
24 1c1y_A RAS-related protein RAP 100.0 4E-31 1.4E-35 179.4 13.6 158 16-178 2-166 (167)
25 1u8z_A RAS-related protein RAL 100.0 4.7E-32 1.6E-36 184.0 8.9 160 16-180 3-168 (168)
26 1r2q_A RAS-related protein RAB 100.0 5.5E-31 1.9E-35 179.1 14.1 160 14-179 3-169 (170)
27 2p5s_A RAS and EF-hand domain 100.0 1.5E-32 5.2E-37 192.1 6.3 166 10-181 21-199 (199)
28 3kkq_A RAS-related protein M-R 100.0 1.3E-30 4.4E-35 179.7 15.8 162 14-180 15-183 (183)
29 2fn4_A P23, RAS-related protei 100.0 6.2E-31 2.1E-35 180.7 14.0 162 13-179 5-172 (181)
30 3q3j_B RHO-related GTP-binding 100.0 5E-31 1.7E-35 186.5 13.7 161 13-180 23-204 (214)
31 2fu5_C RAS-related protein RAB 100.0 3.8E-31 1.3E-35 182.4 12.5 159 15-179 6-171 (183)
32 1x3s_A RAS-related protein RAB 100.0 2.4E-30 8.2E-35 179.9 16.5 161 15-180 13-179 (195)
33 1g16_A RAS-related protein SEC 100.0 7.4E-31 2.5E-35 178.6 13.6 159 16-180 2-166 (170)
34 3t1o_A Gliding protein MGLA; G 100.0 7.5E-31 2.6E-35 182.7 13.9 162 12-180 9-193 (198)
35 4dsu_A GTPase KRAS, isoform 2B 100.0 9.2E-31 3.2E-35 181.1 14.0 161 15-179 2-166 (189)
36 3reg_A RHO-like small GTPase; 100.0 1.1E-30 3.9E-35 181.8 14.4 161 14-180 20-189 (194)
37 3bc1_A RAS-related protein RAB 100.0 1.2E-30 4.1E-35 181.2 14.3 162 13-179 7-185 (195)
38 2fg5_A RAB-22B, RAS-related pr 100.0 3.9E-30 1.3E-34 178.9 16.8 167 7-179 13-186 (192)
39 3q85_A GTP-binding protein REM 100.0 3E-31 1E-35 180.5 10.9 159 17-180 2-168 (169)
40 2hup_A RAS-related protein RAB 100.0 1.8E-30 6E-35 182.0 15.0 160 15-180 27-194 (201)
41 2hxs_A RAB-26, RAS-related pro 100.0 3E-31 1E-35 182.0 10.9 162 14-180 3-174 (178)
42 2atv_A RERG, RAS-like estrogen 100.0 7.1E-32 2.4E-36 188.2 7.7 167 8-180 19-192 (196)
43 3tkl_A RAS-related protein RAB 100.0 4.7E-30 1.6E-34 178.6 16.6 160 15-180 14-180 (196)
44 2fh5_B SR-beta, signal recogni 100.0 3.7E-30 1.3E-34 181.8 16.3 164 14-177 4-214 (214)
45 2ew1_A RAS-related protein RAB 100.0 7.9E-31 2.7E-35 183.8 12.7 159 15-179 24-189 (201)
46 2g6b_A RAS-related protein RAB 100.0 2.5E-30 8.7E-35 177.7 15.0 160 15-180 8-175 (180)
47 2gf9_A RAS-related protein RAB 100.0 6.6E-31 2.3E-35 182.3 12.2 160 15-180 20-186 (189)
48 2bme_A RAB4A, RAS-related prot 100.0 1.7E-30 5.9E-35 179.5 14.2 159 15-179 8-173 (186)
49 2efe_B Small GTP-binding prote 100.0 3E-30 1E-34 177.4 15.3 161 13-179 8-175 (181)
50 1z08_A RAS-related protein RAB 100.0 1.4E-30 4.9E-35 177.3 13.4 159 15-179 4-169 (170)
51 1z0f_A RAB14, member RAS oncog 100.0 3.5E-31 1.2E-35 181.6 10.4 161 14-180 12-179 (179)
52 3tw8_B RAS-related protein RAB 100.0 7E-31 2.4E-35 180.4 11.9 158 15-179 7-171 (181)
53 1wms_A RAB-9, RAB9, RAS-relate 100.0 2E-30 6.7E-35 177.8 14.1 163 14-180 4-175 (177)
54 1z0j_A RAB-22, RAS-related pro 100.0 7.2E-31 2.5E-35 178.6 11.8 159 15-179 4-169 (170)
55 2iwr_A Centaurin gamma 1; ANK 100.0 2.9E-30 1E-34 177.2 15.0 156 14-179 4-169 (178)
56 2oil_A CATX-8, RAS-related pro 100.0 3.2E-30 1.1E-34 179.3 15.1 160 15-180 23-189 (193)
57 2bov_A RAla, RAS-related prote 100.0 4.1E-30 1.4E-34 180.3 15.5 164 11-179 8-177 (206)
58 2a9k_A RAS-related protein RAL 100.0 3E-30 1E-34 178.2 14.4 161 14-179 15-181 (187)
59 3cbq_A GTP-binding protein REM 100.0 1.2E-30 4.1E-35 182.0 12.3 163 13-180 19-189 (195)
60 1z2a_A RAS-related protein RAB 100.0 9.8E-31 3.4E-35 177.7 11.5 159 15-180 3-168 (168)
61 2a5j_A RAS-related protein RAB 100.0 7.3E-31 2.5E-35 182.4 11.0 160 15-180 19-185 (191)
62 1kao_A RAP2A; GTP-binding prot 100.0 8.8E-31 3E-35 177.5 11.0 159 16-179 2-166 (167)
63 2bcg_Y Protein YP2, GTP-bindin 100.0 5.3E-30 1.8E-34 179.9 15.3 160 15-180 6-172 (206)
64 1zbd_A Rabphilin-3A; G protein 100.0 1.3E-30 4.4E-35 182.6 12.1 159 15-179 6-171 (203)
65 1z06_A RAS-related protein RAB 100.0 4.6E-31 1.6E-35 183.1 9.6 163 12-179 15-188 (189)
66 3cph_A RAS-related protein SEC 100.0 5.5E-30 1.9E-34 180.5 15.2 162 12-179 15-182 (213)
67 3dz8_A RAS-related protein RAB 100.0 1.3E-31 4.4E-36 186.2 6.2 160 15-180 21-187 (191)
68 2atx_A Small GTP binding prote 100.0 5.1E-30 1.7E-34 178.4 14.0 160 13-179 14-193 (194)
69 3bwd_D RAC-like GTP-binding pr 100.0 9.9E-31 3.4E-35 180.0 10.3 161 13-179 4-181 (182)
70 1vg8_A RAS-related protein RAB 100.0 5.6E-30 1.9E-34 179.8 14.2 162 14-179 5-175 (207)
71 2il1_A RAB12; G-protein, GDP, 100.0 2.7E-30 9.3E-35 179.7 12.4 161 15-180 24-191 (192)
72 2y8e_A RAB-protein 6, GH09086P 100.0 2.9E-30 9.8E-35 177.1 12.2 159 15-179 12-177 (179)
73 1m7b_A RND3/RHOE small GTP-bin 100.0 2.2E-30 7.6E-35 178.9 11.6 161 14-180 4-184 (184)
74 3clv_A RAB5 protein, putative; 100.0 3.3E-30 1.1E-34 180.3 12.6 159 14-180 4-205 (208)
75 2ce2_X GTPase HRAS; signaling 100.0 1.1E-29 3.9E-34 171.8 14.8 160 16-180 2-166 (166)
76 2o52_A RAS-related protein RAB 100.0 2.6E-30 8.8E-35 181.0 11.9 159 15-179 23-188 (200)
77 3c5c_A RAS-like protein 12; GD 100.0 5E-31 1.7E-35 182.7 8.0 161 14-180 18-187 (187)
78 2f7s_A C25KG, RAS-related prot 100.0 2.3E-30 7.9E-35 183.2 11.5 160 15-179 23-199 (217)
79 4djt_A GTP-binding nuclear pro 100.0 1.8E-30 6.2E-35 183.8 10.8 162 14-180 8-176 (218)
80 3cpj_B GTP-binding protein YPT 100.0 7.5E-30 2.6E-34 181.4 14.0 160 15-180 11-177 (223)
81 4gzl_A RAS-related C3 botulinu 100.0 4.3E-30 1.5E-34 180.4 12.1 164 13-177 26-203 (204)
82 2erx_A GTP-binding protein DI- 100.0 3.5E-30 1.2E-34 175.4 11.4 160 16-180 2-168 (172)
83 2fv8_A H6, RHO-related GTP-bin 100.0 2.1E-29 7.2E-34 177.2 15.6 168 12-180 20-201 (207)
84 3gj0_A GTP-binding nuclear pro 100.0 2.5E-30 8.4E-35 183.6 10.9 161 13-180 11-176 (221)
85 2q3h_A RAS homolog gene family 100.0 1.8E-29 6.3E-34 176.5 15.1 160 13-179 16-195 (201)
86 1ky3_A GTP-binding protein YPT 100.0 9.4E-30 3.2E-34 174.9 13.4 163 14-180 5-179 (182)
87 2j0v_A RAC-like GTP-binding pr 100.0 3.6E-30 1.2E-34 181.6 11.3 160 14-179 6-180 (212)
88 2g3y_A GTP-binding protein GEM 100.0 1.1E-29 3.6E-34 179.1 13.3 160 15-179 35-203 (211)
89 2gco_A H9, RHO-related GTP-bin 100.0 2.4E-29 8.2E-34 176.1 15.0 165 14-179 22-200 (201)
90 3con_A GTPase NRAS; structural 100.0 2.4E-29 8.2E-34 174.4 14.8 163 12-179 16-183 (190)
91 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.5E-29 5.3E-34 174.5 13.2 165 15-180 3-181 (186)
92 1gwn_A RHO-related GTP-binding 100.0 1.7E-29 5.9E-34 177.5 13.5 159 15-180 26-205 (205)
93 2gf0_A GTP-binding protein DI- 100.0 1.3E-29 4.4E-34 176.8 12.5 161 15-180 6-172 (199)
94 2j1l_A RHO-related GTP-binding 100.0 1.8E-29 6.2E-34 178.4 13.2 165 15-180 32-210 (214)
95 3llu_A RAS-related GTP-binding 100.0 6.5E-30 2.2E-34 178.3 10.5 164 11-177 14-195 (196)
96 2yc2_C IFT27, small RAB-relate 100.0 4E-30 1.4E-34 180.5 8.6 160 15-179 18-192 (208)
97 3l0i_B RAS-related protein RAB 100.0 4.4E-30 1.5E-34 179.5 8.8 157 15-180 31-197 (199)
98 2cjw_A GTP-binding protein GEM 100.0 8.7E-29 3E-33 172.2 13.2 160 15-179 4-172 (192)
99 2lkc_A Translation initiation 100.0 1.6E-27 5.4E-32 163.4 17.6 160 14-179 5-171 (178)
100 2zej_A Dardarin, leucine-rich 100.0 1.9E-29 6.5E-34 174.3 8.0 161 17-179 2-178 (184)
101 3th5_A RAS-related C3 botulinu 99.9 8.5E-31 2.9E-35 183.8 0.0 165 12-177 25-203 (204)
102 2qu8_A Putative nucleolar GTP- 100.0 9.6E-28 3.3E-32 171.1 14.7 169 9-179 19-205 (228)
103 3r7w_B Gtpase2, GTP-binding pr 100.0 8.5E-29 2.9E-33 182.9 9.1 157 19-179 1-174 (331)
104 1svi_A GTP-binding protein YSX 100.0 4.8E-28 1.7E-32 168.4 10.1 159 10-178 16-194 (195)
105 2wji_A Ferrous iron transport 99.9 7.3E-27 2.5E-31 158.7 15.2 148 16-178 2-164 (165)
106 2gj8_A MNME, tRNA modification 99.9 4.4E-27 1.5E-31 160.8 12.5 152 16-179 3-166 (172)
107 3pqc_A Probable GTP-binding pr 99.9 9.1E-28 3.1E-32 166.8 8.8 164 11-180 17-195 (195)
108 2dyk_A GTP-binding protein; GT 99.9 8.9E-27 3.1E-31 157.1 13.5 147 18-177 2-160 (161)
109 2wkq_A NPH1-1, RAS-related C3 99.9 1.1E-26 3.9E-31 173.7 13.4 165 15-180 153-331 (332)
110 2cxx_A Probable GTP-binding pr 99.9 6.2E-28 2.1E-32 167.0 5.9 160 18-180 2-185 (190)
111 3r7w_A Gtpase1, GTP-binding pr 99.9 6.4E-27 2.2E-31 173.7 11.6 162 16-178 2-180 (307)
112 3c5h_A Glucocorticoid receptor 99.9 1.4E-27 4.8E-32 172.9 7.7 162 13-178 15-254 (255)
113 2wjg_A FEOB, ferrous iron tran 99.9 1E-25 3.5E-30 155.8 14.7 151 15-180 5-170 (188)
114 4dhe_A Probable GTP-binding pr 99.9 8.1E-27 2.8E-31 165.5 8.7 164 11-179 23-211 (223)
115 3a1s_A Iron(II) transport prot 99.9 3E-25 1E-29 160.8 15.8 149 15-178 3-166 (258)
116 2f9l_A RAB11B, member RAS onco 99.9 6.1E-26 2.1E-30 158.5 10.9 158 16-179 4-168 (199)
117 3iev_A GTP-binding protein ERA 99.9 5.1E-25 1.8E-29 163.5 15.1 161 13-179 6-182 (308)
118 1wf3_A GTP-binding protein; GT 99.9 6.1E-25 2.1E-29 162.4 14.3 155 16-179 6-173 (301)
119 3iby_A Ferrous iron transport 99.9 4.4E-25 1.5E-29 159.7 12.1 144 18-176 2-164 (256)
120 2hjg_A GTP-binding protein ENG 99.9 2E-25 6.9E-30 172.8 10.8 172 3-179 154-349 (436)
121 3i8s_A Ferrous iron transport 99.9 2.5E-25 8.6E-30 162.6 10.6 148 16-178 2-168 (274)
122 3b1v_A Ferrous iron uptake tra 99.9 4.3E-25 1.5E-29 161.0 11.5 147 16-178 2-163 (272)
123 1oix_A RAS-related protein RAB 99.9 7.4E-25 2.5E-29 152.2 12.1 156 16-177 28-190 (191)
124 3gee_A MNME, tRNA modification 99.9 2.5E-24 8.6E-29 167.6 14.1 153 15-178 231-397 (476)
125 3dpu_A RAB family protein; roc 99.9 1.6E-24 5.5E-29 171.7 13.3 156 14-179 38-208 (535)
126 3k53_A Ferrous iron transport 99.9 6.5E-24 2.2E-28 155.0 15.2 150 16-179 2-166 (271)
127 1nrj_B SR-beta, signal recogni 99.9 3.2E-26 1.1E-30 161.9 1.9 119 13-136 8-138 (218)
128 3ohm_A Guanine nucleotide-bind 99.9 1.4E-23 4.7E-28 155.8 14.8 135 46-180 152-319 (327)
129 1cip_A Protein (guanine nucleo 99.9 2.6E-24 9.1E-29 161.7 11.1 134 47-180 179-345 (353)
130 2e87_A Hypothetical protein PH 99.9 2.2E-23 7.6E-28 157.6 15.8 158 15-179 165-336 (357)
131 1xzp_A Probable tRNA modificat 99.9 8.6E-24 3E-28 164.7 12.9 150 16-178 242-404 (482)
132 4dcu_A GTP-binding protein ENG 99.9 2.7E-24 9.3E-29 167.4 10.1 160 15-179 193-369 (456)
133 1lnz_A SPO0B-associated GTP-bi 99.9 4E-24 1.4E-28 160.2 10.6 156 18-179 159-330 (342)
134 3sjy_A Translation initiation 99.9 6.9E-24 2.3E-28 162.8 11.6 161 13-178 4-191 (403)
135 1zcb_A G alpha I/13; GTP-bindi 99.9 2.1E-23 7.3E-28 157.3 14.0 132 48-179 188-353 (362)
136 3qq5_A Small GTP-binding prote 99.9 1.5E-24 5.2E-29 166.4 7.1 154 13-178 30-195 (423)
137 1mky_A Probable GTP-binding pr 99.9 2E-23 6.7E-28 161.8 12.6 150 18-178 2-165 (439)
138 2hjg_A GTP-binding protein ENG 99.9 5.6E-24 1.9E-28 164.8 9.4 149 17-178 3-164 (436)
139 4fid_A G protein alpha subunit 99.9 2.6E-23 9E-28 154.9 10.5 133 47-179 147-328 (340)
140 3geh_A MNME, tRNA modification 99.9 2.2E-23 7.4E-28 161.8 10.3 151 15-179 222-384 (462)
141 1mky_A Probable GTP-binding pr 99.9 7.8E-23 2.7E-27 158.5 13.2 159 16-179 179-355 (439)
142 3tr5_A RF-3, peptide chain rel 99.9 3E-22 1E-26 157.8 15.2 114 15-133 11-149 (528)
143 2ged_A SR-beta, signal recogni 99.9 1.6E-23 5.3E-28 145.4 7.0 125 14-143 45-181 (193)
144 1ega_A Protein (GTP-binding pr 99.9 2.9E-22 9.9E-27 148.2 14.0 154 15-178 6-174 (301)
145 4dcu_A GTP-binding protein ENG 99.9 2E-23 6.8E-28 162.5 7.5 156 11-178 17-184 (456)
146 2xtp_A GTPase IMAP family memb 99.9 3.2E-22 1.1E-26 145.2 13.2 162 13-180 18-209 (260)
147 2xtz_A Guanine nucleotide-bind 99.9 3.5E-23 1.2E-27 155.6 8.1 121 59-179 181-345 (354)
148 3izy_P Translation initiation 99.9 1.3E-23 4.5E-28 165.1 6.0 158 16-178 3-167 (537)
149 1s0u_A EIF-2-gamma, translatio 99.9 4.8E-22 1.6E-26 152.8 14.3 161 13-178 4-197 (408)
150 1wb1_A Translation elongation 99.9 6E-23 2E-27 160.5 9.3 158 15-178 17-188 (482)
151 3cb4_D GTP-binding protein LEP 99.9 5.5E-22 1.9E-26 157.9 12.7 154 16-179 3-182 (599)
152 1g7s_A Translation initiation 99.9 1.2E-21 4.2E-26 156.0 14.5 159 15-178 3-217 (594)
153 3lxw_A GTPase IMAP family memb 99.9 4.8E-22 1.7E-26 143.2 11.1 163 15-179 19-208 (247)
154 1zun_B Sulfate adenylate trans 99.9 5.6E-22 1.9E-26 153.5 12.1 158 8-169 15-214 (434)
155 3j2k_7 ERF3, eukaryotic polype 99.9 6.5E-22 2.2E-26 153.1 12.5 154 14-171 14-217 (439)
156 2qtf_A Protein HFLX, GTP-bindi 99.9 9.7E-22 3.3E-26 148.6 12.7 157 17-179 178-354 (364)
157 2ywe_A GTP-binding protein LEP 99.9 1.6E-21 5.3E-26 155.1 14.4 155 15-179 4-184 (600)
158 2elf_A Protein translation elo 99.9 6.3E-22 2.2E-26 150.0 11.6 146 19-178 23-179 (370)
159 1jny_A EF-1-alpha, elongation 99.9 8.5E-23 2.9E-27 158.0 6.9 152 15-170 4-204 (435)
160 1kk1_A EIF2gamma; initiation o 99.9 4.5E-22 1.5E-26 153.0 10.7 161 13-178 6-199 (410)
161 3p26_A Elongation factor 1 alp 99.9 4.3E-22 1.5E-26 156.0 10.0 153 14-168 30-227 (483)
162 1zo1_I IF2, translation initia 99.9 1.2E-22 4E-27 158.5 5.7 155 15-175 2-163 (501)
163 1d2e_A Elongation factor TU (E 99.9 4.9E-22 1.7E-26 152.2 8.4 158 16-178 2-194 (397)
164 2c78_A Elongation factor TU-A; 99.9 1.4E-21 4.7E-26 150.1 10.7 159 15-178 9-211 (405)
165 3izq_1 HBS1P, elongation facto 99.9 2.5E-22 8.7E-27 160.7 6.4 153 15-169 165-362 (611)
166 3lxx_A GTPase IMAP family memb 99.9 6.6E-22 2.3E-26 141.8 7.0 167 11-179 23-214 (239)
167 3t5d_A Septin-7; GTP-binding p 99.9 7.9E-22 2.7E-26 144.2 7.5 157 15-177 6-202 (274)
168 2aka_B Dynamin-1; fusion prote 99.9 7.3E-21 2.5E-25 140.5 11.9 156 15-175 24-249 (299)
169 1r5b_A Eukaryotic peptide chai 99.8 1.4E-22 4.8E-27 158.0 2.2 157 10-170 36-243 (467)
170 2h5e_A Peptide chain release f 99.8 1.5E-19 5.3E-24 142.5 17.6 115 15-134 11-150 (529)
171 3mca_A HBS1, elongation factor 99.8 1.9E-22 6.4E-27 161.0 1.0 150 14-167 174-371 (592)
172 2qag_A Septin-2, protein NEDD5 99.8 9.2E-22 3.1E-26 148.8 4.6 159 14-179 34-233 (361)
173 1f60_A Elongation factor EEF1A 99.8 5.3E-21 1.8E-25 148.8 8.1 151 15-169 5-202 (458)
174 1dar_A EF-G, elongation factor 99.8 1.1E-19 3.9E-24 147.4 16.1 115 14-133 9-144 (691)
175 3def_A T7I23.11 protein; chlor 99.8 7.1E-20 2.4E-24 133.0 12.3 123 7-132 24-165 (262)
176 3avx_A Elongation factor TS, e 99.8 4.3E-20 1.5E-24 154.1 10.1 159 15-178 294-485 (1289)
177 2dy1_A Elongation factor G; tr 99.8 4.3E-19 1.5E-23 143.5 15.0 114 13-131 5-139 (665)
178 1jwy_B Dynamin A GTPase domain 99.8 1.7E-19 5.9E-24 134.1 11.6 160 15-178 22-261 (315)
179 1azs_C GS-alpha; complex (lyas 99.8 3.3E-20 1.1E-24 141.1 7.7 132 48-179 204-385 (402)
180 2xex_A Elongation factor G; GT 99.8 1.1E-18 3.7E-23 141.7 16.8 116 13-133 6-142 (693)
181 1pui_A ENGB, probable GTP-bind 99.8 1.8E-19 6.2E-24 126.4 10.2 159 12-179 21-199 (210)
182 2j69_A Bacterial dynamin-like 99.8 8.5E-20 2.9E-24 148.2 9.1 159 15-178 67-324 (695)
183 2rdo_7 EF-G, elongation factor 99.8 4.2E-18 1.4E-22 138.4 17.1 115 14-133 7-149 (704)
184 1h65_A Chloroplast outer envel 99.8 1.7E-18 5.7E-23 126.2 11.7 118 15-133 37-169 (270)
185 1udx_A The GTP-binding protein 99.8 2.5E-18 8.4E-23 131.7 12.3 156 18-179 158-325 (416)
186 3t34_A Dynamin-related protein 99.8 9.4E-19 3.2E-23 132.5 7.2 150 16-172 33-254 (360)
187 2x2e_A Dynamin-1; nitration, h 99.8 3.3E-18 1.1E-22 129.1 9.2 155 15-175 29-254 (353)
188 3vqt_A RF-3, peptide chain rel 99.8 4.8E-17 1.7E-21 128.8 16.2 114 15-133 29-167 (548)
189 2qnr_A Septin-2, protein NEDD5 99.7 1.5E-18 5.1E-23 128.3 3.5 159 14-179 15-214 (301)
190 3p32_A Probable GTPase RV1496/ 99.7 8E-18 2.7E-22 127.1 7.0 152 15-178 77-283 (355)
191 3l82_B F-box only protein 4; T 99.7 2.5E-17 8.7E-22 113.6 8.5 173 6-180 5-224 (227)
192 2wsm_A Hydrogenase expression/ 99.7 3.1E-17 1E-21 116.0 9.1 156 9-179 22-214 (221)
193 1u0l_A Probable GTPase ENGC; p 99.7 1.8E-17 6.1E-22 122.5 8.0 131 32-175 32-169 (301)
194 2qpt_A EH domain-containing pr 99.7 2.4E-17 8.1E-22 130.7 7.7 121 15-139 63-239 (550)
195 1wxq_A GTP-binding protein; st 99.7 7.8E-18 2.7E-22 128.6 4.6 80 18-97 1-114 (397)
196 2www_A Methylmalonic aciduria 99.7 1.4E-16 4.6E-21 120.0 10.3 150 16-177 73-277 (349)
197 1n0u_A EF-2, elongation factor 99.7 1.2E-16 4.1E-21 132.1 10.3 113 14-131 16-163 (842)
198 2qag_C Septin-7; cell cycle, c 99.7 5.4E-17 1.9E-21 124.4 7.2 158 15-177 29-225 (418)
199 3j25_A Tetracycline resistance 99.6 1.3E-16 4.3E-21 128.6 5.9 157 17-178 2-238 (638)
200 4a9a_A Ribosome-interacting GT 99.6 4.9E-15 1.7E-19 111.9 13.9 81 17-97 72-162 (376)
201 3zvr_A Dynamin-1; hydrolase, D 99.6 3.9E-15 1.3E-19 120.9 12.2 156 15-175 49-274 (772)
202 1jal_A YCHF protein; nucleotid 99.6 1E-14 3.5E-19 109.6 13.7 79 18-96 3-108 (363)
203 3l2o_B F-box only protein 4; s 99.6 6.2E-16 2.1E-20 111.6 6.6 111 68-180 194-309 (312)
204 1yrb_A ATP(GTP)binding protein 99.6 5.5E-16 1.9E-20 112.2 6.0 117 61-178 109-256 (262)
205 2p67_A LAO/AO transport system 99.6 6.5E-16 2.2E-20 116.1 6.2 153 14-178 53-260 (341)
206 4fn5_A EF-G 1, elongation fact 99.6 4.5E-14 1.5E-18 115.2 17.0 114 15-133 11-152 (709)
207 2hf9_A Probable hydrogenase ni 99.6 7.5E-15 2.6E-19 104.0 8.7 153 12-179 33-224 (226)
208 2dby_A GTP-binding protein; GD 99.5 8.4E-14 2.9E-18 105.2 10.0 79 18-96 2-111 (368)
209 2qm8_A GTPase/ATPase; G protei 99.5 6.1E-14 2.1E-18 105.1 7.5 153 14-178 52-260 (337)
210 2yv5_A YJEQ protein; hydrolase 99.3 2.3E-12 7.9E-17 95.2 7.5 95 71-174 66-164 (302)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 3.2E-12 1.1E-16 97.1 5.7 84 15-98 20-130 (396)
212 3ec1_A YQEH GTPase; atnos1, at 99.1 5.3E-11 1.8E-15 90.2 2.8 113 16-134 161-290 (369)
213 2j37_W Signal recognition part 99.0 1.8E-09 6.1E-14 84.6 10.9 153 16-176 100-310 (504)
214 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.1E-09 3.7E-14 83.3 9.1 82 15-96 18-127 (392)
215 2qag_B Septin-6, protein NEDD5 99.0 1.1E-09 3.7E-14 83.9 7.4 119 15-139 40-197 (427)
216 3h2y_A GTPase family protein; 99.0 1.9E-10 6.4E-15 87.1 3.2 100 70-177 55-158 (368)
217 3h2y_A GTPase family protein; 98.9 5.1E-10 1.7E-14 84.7 4.2 115 16-136 159-291 (368)
218 3ec1_A YQEH GTPase; atnos1, at 98.9 3.4E-10 1.2E-14 85.8 3.1 102 69-178 56-161 (369)
219 3sop_A Neuronal-specific septi 98.9 2.9E-09 9.8E-14 77.3 7.0 111 17-133 2-155 (270)
220 1tq4_A IIGP1, interferon-induc 98.9 1.2E-08 4E-13 78.2 10.1 158 15-179 67-253 (413)
221 1puj_A YLQF, conserved hypothe 98.8 2.6E-09 9.1E-14 78.0 4.7 102 65-178 3-105 (282)
222 1puj_A YLQF, conserved hypothe 98.7 9.1E-09 3.1E-13 75.1 4.8 57 15-72 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.7 4.2E-09 1.4E-13 76.2 2.4 55 18-73 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.5 3.5E-07 1.2E-11 70.5 8.8 110 16-132 99-253 (443)
225 1f5n_A Interferon-induced guan 98.4 2.5E-07 8.7E-12 73.7 5.8 60 14-73 35-103 (592)
226 3szr_A Interferon-induced GTP- 98.4 2.5E-07 8.5E-12 74.4 5.1 24 18-41 46-69 (608)
227 2v3c_C SRP54, signal recogniti 98.3 4.6E-07 1.6E-11 69.9 4.7 108 17-132 99-252 (432)
228 1t9h_A YLOQ, probable GTPase E 98.3 3.8E-07 1.3E-11 67.2 2.7 86 79-172 81-170 (307)
229 3cnl_A YLQF, putative uncharac 98.2 2.1E-07 7.1E-12 67.3 -0.1 92 68-174 4-96 (262)
230 3kl4_A SRP54, signal recogniti 98.1 1.1E-05 3.7E-10 62.2 8.1 109 17-132 97-252 (433)
231 1j8m_F SRP54, signal recogniti 98.1 3.6E-06 1.2E-10 61.8 4.4 108 17-132 98-253 (297)
232 1bif_A 6-phosphofructo-2-kinas 98.0 4.1E-07 1.4E-11 71.1 -2.3 94 13-107 35-142 (469)
233 3q5d_A Atlastin-1; G protein, 97.9 1.8E-05 6.1E-10 61.2 6.1 37 4-40 52-90 (447)
234 2rcn_A Probable GTPase ENGC; Y 97.9 3.1E-05 1.1E-09 58.2 7.3 84 81-173 127-213 (358)
235 2xxa_A Signal recognition part 97.8 0.00014 4.9E-09 56.1 9.3 122 16-145 99-268 (433)
236 3e70_C DPA, signal recognition 97.8 3.3E-05 1.1E-09 57.5 5.2 111 15-132 127-282 (328)
237 1np6_A Molybdopterin-guanine d 97.7 0.00019 6.4E-09 48.5 7.8 107 18-130 7-125 (174)
238 1ye8_A Protein THEP1, hypothet 97.6 3.2E-05 1.1E-09 52.5 3.1 23 18-40 1-23 (178)
239 1kgd_A CASK, peripheral plasma 97.5 5.7E-05 2E-09 51.2 3.4 24 17-40 5-28 (180)
240 3c8u_A Fructokinase; YP_612366 97.5 8.1E-05 2.8E-09 51.6 4.1 35 6-40 9-45 (208)
241 3ney_A 55 kDa erythrocyte memb 97.5 6.4E-05 2.2E-09 51.8 3.4 30 11-40 13-42 (197)
242 1lvg_A Guanylate kinase, GMP k 97.5 4.9E-05 1.7E-09 52.4 2.8 22 18-39 5-26 (198)
243 2ffh_A Protein (FFH); SRP54, s 97.5 0.00011 3.6E-09 56.6 4.7 67 59-132 179-251 (425)
244 3ec2_A DNA replication protein 97.5 8.8E-05 3E-09 50.1 3.5 33 9-41 30-62 (180)
245 2bbw_A Adenylate kinase 4, AK4 97.5 8.1E-05 2.8E-09 52.9 3.4 24 15-38 25-48 (246)
246 3tr0_A Guanylate kinase, GMP k 97.4 7.6E-05 2.6E-09 51.4 2.7 24 17-40 7-30 (205)
247 3a00_A Guanylate kinase, GMP k 97.4 8E-05 2.8E-09 50.7 2.7 22 19-40 3-24 (186)
248 1zp6_A Hypothetical protein AT 97.4 0.00011 3.8E-09 49.9 3.2 25 16-40 8-32 (191)
249 1znw_A Guanylate kinase, GMP k 97.4 9.6E-05 3.3E-09 51.2 2.8 26 15-40 18-43 (207)
250 3end_A Light-independent proto 97.4 0.0046 1.6E-07 45.2 12.0 83 60-146 156-239 (307)
251 4gp7_A Metallophosphoesterase; 97.4 8.9E-05 3.1E-09 49.8 2.5 24 16-39 8-31 (171)
252 1z6g_A Guanylate kinase; struc 97.3 0.00011 3.8E-09 51.4 3.0 26 15-40 21-46 (218)
253 1s96_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 51.5 2.7 26 16-41 15-40 (219)
254 1jbk_A CLPB protein; beta barr 97.3 0.00029 9.8E-09 47.4 4.7 36 5-40 31-66 (195)
255 2j41_A Guanylate kinase; GMP, 97.3 0.00018 6E-09 49.5 3.4 26 16-41 5-30 (207)
256 3lw7_A Adenylate kinase relate 97.3 0.00017 5.7E-09 48.1 3.1 20 18-37 2-21 (179)
257 3asz_A Uridine kinase; cytidin 97.3 0.00016 5.4E-09 50.1 3.1 25 15-39 4-28 (211)
258 3tau_A Guanylate kinase, GMP k 97.3 0.00019 6.5E-09 49.8 3.4 27 15-41 6-32 (208)
259 4dzz_A Plasmid partitioning pr 97.3 0.0018 6E-08 44.4 8.3 69 59-131 74-143 (206)
260 3tif_A Uncharacterized ABC tra 97.2 0.00015 5.3E-09 51.3 2.9 26 16-41 30-55 (235)
261 2cdn_A Adenylate kinase; phosp 97.2 0.00021 7.1E-09 49.1 3.4 28 12-39 15-42 (201)
262 2rcn_A Probable GTPase ENGC; Y 97.2 0.00017 6E-09 54.1 3.1 26 17-42 215-240 (358)
263 1ex7_A Guanylate kinase; subst 97.2 0.00017 5.9E-09 49.2 2.9 21 20-40 4-24 (186)
264 1y63_A LMAJ004144AAA protein; 97.2 0.00023 7.8E-09 48.3 3.5 28 13-40 6-33 (184)
265 2qor_A Guanylate kinase; phosp 97.2 0.00019 6.5E-09 49.5 2.9 24 16-39 11-34 (204)
266 1kag_A SKI, shikimate kinase I 97.2 0.0002 6.7E-09 47.9 2.7 22 18-39 5-26 (173)
267 2pcj_A ABC transporter, lipopr 97.2 0.0002 6.7E-09 50.4 2.8 26 16-41 29-54 (224)
268 2bdt_A BH3686; alpha-beta prot 97.2 0.0002 6.9E-09 48.7 2.8 21 19-39 4-24 (189)
269 2yvu_A Probable adenylyl-sulfa 97.2 0.00023 7.9E-09 48.3 3.1 30 10-39 6-35 (186)
270 4eun_A Thermoresistant glucoki 97.2 0.00025 8.7E-09 48.7 3.3 25 15-39 27-51 (200)
271 2eyu_A Twitching motility prot 97.2 0.00035 1.2E-08 50.3 4.1 31 10-40 18-48 (261)
272 3fb4_A Adenylate kinase; psych 97.2 0.00025 8.6E-09 49.2 3.1 22 18-39 1-22 (216)
273 1knq_A Gluconate kinase; ALFA/ 97.2 0.00027 9.2E-09 47.4 3.2 24 16-39 7-30 (175)
274 2p65_A Hypothetical protein PF 97.2 0.00037 1.3E-08 46.8 3.9 36 5-40 31-66 (187)
275 1ly1_A Polynucleotide kinase; 97.1 0.00023 7.8E-09 47.8 2.8 22 18-39 3-24 (181)
276 3kb2_A SPBC2 prophage-derived 97.1 0.00026 9E-09 47.1 3.1 21 19-39 3-23 (173)
277 3dl0_A Adenylate kinase; phosp 97.1 0.00027 9.1E-09 49.1 3.1 22 18-39 1-22 (216)
278 2onk_A Molybdate/tungstate ABC 97.1 0.00025 8.4E-09 50.4 2.9 24 18-41 25-48 (240)
279 3tqc_A Pantothenate kinase; bi 97.1 0.00034 1.2E-08 51.8 3.7 24 15-38 90-113 (321)
280 3uie_A Adenylyl-sulfate kinase 97.1 0.00033 1.1E-08 48.1 3.5 28 12-39 20-47 (200)
281 2v9p_A Replication protein E1; 97.1 0.00034 1.2E-08 51.5 3.6 26 14-39 123-148 (305)
282 3gfo_A Cobalt import ATP-bindi 97.1 0.00025 8.4E-09 51.5 2.8 26 16-41 33-58 (275)
283 1htw_A HI0065; nucleotide-bind 97.1 0.00037 1.3E-08 46.3 3.4 27 15-41 31-57 (158)
284 2cbz_A Multidrug resistance-as 97.1 0.00026 9E-09 50.2 2.9 26 16-41 30-55 (237)
285 1t9h_A YLOQ, probable GTPase E 97.1 8.8E-05 3E-09 54.6 0.4 26 16-41 172-197 (307)
286 1sgw_A Putative ABC transporte 97.1 0.00027 9.4E-09 49.3 2.8 26 16-41 34-59 (214)
287 1b0u_A Histidine permease; ABC 97.1 0.00027 9.1E-09 50.9 2.8 26 16-41 31-56 (262)
288 2jeo_A Uridine-cytidine kinase 97.1 0.00032 1.1E-08 49.9 3.2 28 12-39 20-47 (245)
289 3t61_A Gluconokinase; PSI-biol 97.1 0.00031 1.1E-08 48.3 3.1 23 17-39 18-40 (202)
290 4g1u_C Hemin import ATP-bindin 97.1 0.00027 9.3E-09 51.0 2.8 26 16-41 36-61 (266)
291 2i3b_A HCR-ntpase, human cance 97.1 0.00026 9E-09 48.4 2.6 22 19-40 3-24 (189)
292 1kht_A Adenylate kinase; phosp 97.1 0.00034 1.2E-08 47.4 3.2 23 17-39 3-25 (192)
293 1cke_A CK, MSSA, protein (cyti 97.1 0.00033 1.1E-08 48.9 3.2 23 17-39 5-27 (227)
294 1g6h_A High-affinity branched- 97.1 0.00028 9.7E-09 50.6 2.9 26 16-41 32-57 (257)
295 3cm0_A Adenylate kinase; ATP-b 97.1 0.0003 1E-08 47.6 2.9 23 17-39 4-26 (186)
296 1aky_A Adenylate kinase; ATP:A 97.1 0.00036 1.2E-08 48.6 3.3 25 15-39 2-26 (220)
297 2if2_A Dephospho-COA kinase; a 97.1 0.00032 1.1E-08 48.2 3.0 22 18-39 2-23 (204)
298 2ff7_A Alpha-hemolysin translo 97.1 0.00033 1.1E-08 50.0 3.1 26 16-41 34-59 (247)
299 1u0l_A Probable GTPase ENGC; p 97.1 0.00027 9.4E-09 51.9 2.7 26 17-42 169-194 (301)
300 3vaa_A Shikimate kinase, SK; s 97.1 0.00037 1.3E-08 47.8 3.3 24 16-39 24-47 (199)
301 1mv5_A LMRA, multidrug resista 97.1 0.00033 1.1E-08 49.8 3.1 26 16-41 27-52 (243)
302 3lnc_A Guanylate kinase, GMP k 97.1 0.00023 7.7E-09 50.1 2.2 26 15-40 25-51 (231)
303 2pze_A Cystic fibrosis transme 97.1 0.00031 1.1E-08 49.5 2.8 26 16-41 33-58 (229)
304 2rhm_A Putative kinase; P-loop 97.1 0.00038 1.3E-08 47.3 3.2 24 16-39 4-27 (193)
305 3jvv_A Twitching mobility prot 97.0 0.00048 1.6E-08 51.8 3.9 31 10-40 116-146 (356)
306 2olj_A Amino acid ABC transpor 97.0 0.00033 1.1E-08 50.5 2.8 26 16-41 49-74 (263)
307 3b85_A Phosphate starvation-in 97.0 0.00028 9.5E-09 49.0 2.4 24 17-40 22-45 (208)
308 1ji0_A ABC transporter; ATP bi 97.0 0.00034 1.2E-08 49.7 2.9 26 16-41 31-56 (240)
309 3aez_A Pantothenate kinase; tr 97.0 0.00037 1.3E-08 51.4 3.2 26 14-39 87-112 (312)
310 3tlx_A Adenylate kinase 2; str 97.0 0.00065 2.2E-08 48.3 4.3 25 15-39 27-51 (243)
311 1vpl_A ABC transporter, ATP-bi 97.0 0.00034 1.2E-08 50.2 2.8 26 16-41 40-65 (256)
312 2qi9_C Vitamin B12 import ATP- 97.0 0.00035 1.2E-08 49.9 2.8 26 16-41 25-50 (249)
313 2jaq_A Deoxyguanosine kinase; 97.0 0.0004 1.4E-08 47.5 3.1 21 19-39 2-22 (205)
314 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00037 1.3E-08 49.8 2.9 25 16-40 28-52 (250)
315 1rz3_A Hypothetical protein rb 97.0 0.00064 2.2E-08 46.8 4.0 25 15-39 20-44 (201)
316 2ghi_A Transport protein; mult 97.0 0.0004 1.4E-08 49.9 3.1 26 16-41 45-70 (260)
317 2yv5_A YJEQ protein; hydrolase 97.0 0.00036 1.2E-08 51.3 2.9 24 17-41 165-188 (302)
318 3sr0_A Adenylate kinase; phosp 97.0 0.00042 1.4E-08 48.0 3.1 22 18-39 1-22 (206)
319 1jjv_A Dephospho-COA kinase; P 97.0 0.00041 1.4E-08 47.8 3.0 22 18-39 3-24 (206)
320 1odf_A YGR205W, hypothetical 3 97.0 0.00077 2.6E-08 49.2 4.5 25 14-38 28-52 (290)
321 2v54_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 47.1 3.4 25 16-40 3-27 (204)
322 2zu0_C Probable ATP-dependent 97.0 0.00039 1.3E-08 50.2 2.9 25 16-40 45-69 (267)
323 1e4v_A Adenylate kinase; trans 97.0 0.00044 1.5E-08 48.0 3.1 22 18-39 1-22 (214)
324 2ixe_A Antigen peptide transpo 97.0 0.00039 1.3E-08 50.3 2.9 26 16-41 44-69 (271)
325 1sq5_A Pantothenate kinase; P- 97.0 0.00055 1.9E-08 50.4 3.7 25 15-39 78-102 (308)
326 4a74_A DNA repair and recombin 97.0 0.00038 1.3E-08 48.6 2.7 24 16-39 24-47 (231)
327 2qt1_A Nicotinamide riboside k 97.0 0.0005 1.7E-08 47.4 3.3 25 16-40 20-44 (207)
328 1qhx_A CPT, protein (chloramph 97.0 0.00041 1.4E-08 46.5 2.8 22 18-39 4-25 (178)
329 2ihy_A ABC transporter, ATP-bi 97.0 0.00044 1.5E-08 50.2 3.1 26 16-41 46-71 (279)
330 1nks_A Adenylate kinase; therm 97.0 0.00045 1.5E-08 46.8 2.9 21 19-39 3-23 (194)
331 2nq2_C Hypothetical ABC transp 97.0 0.0004 1.4E-08 49.7 2.8 26 16-41 30-55 (253)
332 2yz2_A Putative ABC transporte 97.0 0.00042 1.4E-08 50.0 2.9 26 16-41 32-57 (266)
333 2plr_A DTMP kinase, probable t 97.0 0.00051 1.7E-08 47.3 3.2 23 17-39 4-26 (213)
334 2f1r_A Molybdopterin-guanine d 97.0 0.00021 7.3E-09 48.1 1.2 22 19-40 4-25 (171)
335 1tev_A UMP-CMP kinase; ploop, 97.0 0.00049 1.7E-08 46.7 3.0 23 17-39 3-25 (196)
336 2ehv_A Hypothetical protein PH 97.0 0.00044 1.5E-08 48.9 2.9 23 16-38 29-51 (251)
337 2c95_A Adenylate kinase 1; tra 97.0 0.00056 1.9E-08 46.5 3.3 24 16-39 8-31 (196)
338 3be4_A Adenylate kinase; malar 96.9 0.00056 1.9E-08 47.6 3.3 24 16-39 4-27 (217)
339 1tue_A Replication protein E1; 96.9 0.00051 1.7E-08 47.5 3.0 33 5-39 48-80 (212)
340 3bos_A Putative DNA replicatio 96.9 0.0011 3.7E-08 46.4 4.7 25 16-40 51-75 (242)
341 2wwf_A Thymidilate kinase, put 96.9 0.0006 2.1E-08 47.0 3.4 24 16-39 9-32 (212)
342 3iij_A Coilin-interacting nucl 96.9 0.00053 1.8E-08 46.2 3.0 25 15-39 9-33 (180)
343 1nn5_A Similar to deoxythymidy 96.9 0.0006 2.1E-08 47.1 3.4 25 15-39 7-31 (215)
344 1zd8_A GTP:AMP phosphotransfer 96.9 0.00055 1.9E-08 48.0 3.2 23 16-38 6-28 (227)
345 2pt5_A Shikimate kinase, SK; a 96.9 0.00059 2E-08 45.3 3.1 22 18-39 1-22 (168)
346 1uf9_A TT1252 protein; P-loop, 96.9 0.00058 2E-08 46.7 3.1 26 15-40 6-31 (203)
347 3trf_A Shikimate kinase, SK; a 96.9 0.00062 2.1E-08 46.0 3.2 23 17-39 5-27 (185)
348 2ewv_A Twitching motility prot 96.9 0.0007 2.4E-08 51.2 3.8 26 15-40 134-159 (372)
349 1ukz_A Uridylate kinase; trans 96.9 0.0006 2.1E-08 46.8 3.1 25 15-39 13-37 (203)
350 3nh6_A ATP-binding cassette SU 96.9 0.00036 1.2E-08 51.4 2.0 27 15-41 78-104 (306)
351 2vp4_A Deoxynucleoside kinase; 96.9 0.00057 1.9E-08 48.1 3.0 26 15-40 18-43 (230)
352 2vli_A Antibiotic resistance p 96.9 0.00044 1.5E-08 46.6 2.3 24 16-39 4-27 (183)
353 2pjz_A Hypothetical protein ST 96.9 0.00059 2E-08 49.1 3.1 25 17-41 30-54 (263)
354 1zak_A Adenylate kinase; ATP:A 96.9 0.0006 2E-08 47.6 3.0 24 16-39 4-27 (222)
355 1gvn_B Zeta; postsegregational 96.9 0.00061 2.1E-08 49.7 3.1 25 15-39 31-55 (287)
356 1p9r_A General secretion pathw 96.8 0.00094 3.2E-08 51.3 4.1 32 9-40 159-190 (418)
357 4e22_A Cytidylate kinase; P-lo 96.8 0.00077 2.6E-08 48.1 3.4 24 15-38 25-48 (252)
358 2xb4_A Adenylate kinase; ATP-b 96.8 0.00069 2.4E-08 47.4 3.1 22 18-39 1-22 (223)
359 2kjq_A DNAA-related protein; s 96.8 0.00049 1.7E-08 45.1 2.1 26 16-41 35-60 (149)
360 2gza_A Type IV secretion syste 96.8 0.00059 2E-08 51.4 2.8 27 15-41 173-199 (361)
361 1lw7_A Transcriptional regulat 96.8 0.00052 1.8E-08 51.7 2.5 25 17-41 170-194 (365)
362 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00064 2.2E-08 50.6 2.9 26 16-41 170-195 (330)
363 2bbs_A Cystic fibrosis transme 96.8 0.0007 2.4E-08 49.5 3.0 26 16-41 63-88 (290)
364 2pbr_A DTMP kinase, thymidylat 96.8 0.00078 2.7E-08 45.7 3.1 21 19-39 2-22 (195)
365 4ido_A Atlastin-1; GTPase, GTP 96.8 0.0015 5E-08 50.6 4.8 35 4-38 52-88 (457)
366 3tui_C Methionine import ATP-b 96.8 0.00067 2.3E-08 51.1 2.9 26 16-41 53-78 (366)
367 1via_A Shikimate kinase; struc 96.8 0.00067 2.3E-08 45.5 2.6 21 19-39 6-26 (175)
368 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00069 2.3E-08 50.9 2.9 26 16-41 29-54 (359)
369 2bwj_A Adenylate kinase 5; pho 96.8 0.00087 3E-08 45.7 3.2 23 17-39 12-34 (199)
370 2chg_A Replication factor C sm 96.8 0.0015 5E-08 45.0 4.3 25 16-40 37-61 (226)
371 2z0h_A DTMP kinase, thymidylat 96.8 0.0009 3.1E-08 45.5 3.1 21 19-39 2-22 (197)
372 2oap_1 GSPE-2, type II secreti 96.8 0.00076 2.6E-08 53.2 3.0 26 16-41 259-284 (511)
373 1rj9_A FTSY, signal recognitio 96.7 0.00099 3.4E-08 49.0 3.4 124 16-146 101-276 (304)
374 1vht_A Dephospho-COA kinase; s 96.7 0.00097 3.3E-08 46.3 3.2 23 17-39 4-26 (218)
375 1xjc_A MOBB protein homolog; s 96.7 0.001 3.6E-08 44.5 3.2 22 18-39 5-26 (169)
376 1z47_A CYSA, putative ABC-tran 96.7 0.00084 2.9E-08 50.4 2.9 26 16-41 40-65 (355)
377 2pez_A Bifunctional 3'-phospho 96.7 0.001 3.5E-08 44.7 3.1 24 16-39 4-27 (179)
378 2x8a_A Nuclear valosin-contain 96.7 0.0017 5.7E-08 47.0 4.4 21 20-40 47-67 (274)
379 3rlf_A Maltose/maltodextrin im 96.7 0.00085 2.9E-08 50.8 2.9 26 16-41 28-53 (381)
380 1qf9_A UMP/CMP kinase, protein 96.7 0.0011 3.7E-08 44.9 3.2 23 17-39 6-28 (194)
381 2yyz_A Sugar ABC transporter, 96.7 0.00087 3E-08 50.4 2.9 26 16-41 28-53 (359)
382 3b9q_A Chloroplast SRP recepto 96.7 0.00083 2.9E-08 49.4 2.7 24 16-39 99-122 (302)
383 1ak2_A Adenylate kinase isoenz 96.7 0.0012 4E-08 46.5 3.4 25 15-39 14-38 (233)
384 1uj2_A Uridine-cytidine kinase 96.7 0.0011 3.6E-08 47.3 3.2 27 13-39 18-44 (252)
385 2it1_A 362AA long hypothetical 96.7 0.00091 3.1E-08 50.4 2.9 26 16-41 28-53 (362)
386 1gtv_A TMK, thymidylate kinase 96.7 0.00036 1.2E-08 48.2 0.7 21 19-39 2-22 (214)
387 2p5t_B PEZT; postsegregational 96.7 0.00074 2.5E-08 48.2 2.2 25 15-39 30-54 (253)
388 3r20_A Cytidylate kinase; stru 96.7 0.0012 4.1E-08 46.6 3.2 24 15-38 7-30 (233)
389 1e6c_A Shikimate kinase; phosp 96.7 0.001 3.6E-08 44.2 2.8 21 19-39 4-24 (173)
390 1g29_1 MALK, maltose transport 96.7 0.001 3.4E-08 50.4 2.9 26 16-41 28-53 (372)
391 1ixz_A ATP-dependent metallopr 96.7 0.002 6.8E-08 45.8 4.4 22 19-40 51-72 (254)
392 2iyv_A Shikimate kinase, SK; t 96.6 0.001 3.6E-08 44.8 2.8 22 18-39 3-24 (184)
393 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 4.1E-08 47.4 3.1 23 17-39 4-26 (260)
394 1m7g_A Adenylylsulfate kinase; 96.6 0.0017 5.7E-08 45.0 3.8 27 13-39 21-47 (211)
395 1v43_A Sugar-binding transport 96.6 0.001 3.6E-08 50.3 2.9 26 16-41 36-61 (372)
396 3cwq_A Para family chromosome 96.6 0.015 5E-07 40.2 8.6 68 59-132 66-134 (209)
397 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0011 3.6E-08 46.3 2.8 24 16-39 22-45 (235)
398 3kta_A Chromosome segregation 96.6 0.0011 3.7E-08 44.6 2.7 21 19-39 28-48 (182)
399 2ze6_A Isopentenyl transferase 96.6 0.0011 3.6E-08 47.5 2.8 21 19-39 3-23 (253)
400 2f6r_A COA synthase, bifunctio 96.6 0.0013 4.4E-08 47.8 3.2 24 15-38 73-96 (281)
401 1zuh_A Shikimate kinase; alpha 96.6 0.0014 4.7E-08 43.5 3.0 21 19-39 9-29 (168)
402 2w58_A DNAI, primosome compone 96.6 0.0025 8.6E-08 43.6 4.4 23 18-40 55-77 (202)
403 3gd7_A Fusion complex of cysti 96.6 0.0012 4.2E-08 50.2 2.9 25 16-40 46-70 (390)
404 3d31_A Sulfate/molybdate ABC t 96.5 0.00082 2.8E-08 50.3 1.8 26 16-41 25-50 (348)
405 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0015 5.1E-08 50.8 3.3 29 13-41 134-162 (460)
406 1cr0_A DNA primase/helicase; R 96.5 0.0013 4.4E-08 48.0 2.7 24 16-39 34-57 (296)
407 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0013 4.6E-08 43.0 2.6 19 20-38 26-44 (149)
408 1d2n_A N-ethylmaleimide-sensit 96.5 0.0022 7.6E-08 46.1 3.9 27 14-40 61-87 (272)
409 1sxj_C Activator 1 40 kDa subu 96.5 0.0025 8.6E-08 47.4 4.3 26 15-40 44-69 (340)
410 3h4m_A Proteasome-activating n 96.5 0.0028 9.5E-08 45.8 4.4 26 15-40 49-74 (285)
411 4eaq_A DTMP kinase, thymidylat 96.5 0.0017 5.9E-08 45.7 3.2 24 16-39 25-48 (229)
412 1in4_A RUVB, holliday junction 96.5 0.0014 4.7E-08 48.8 2.8 23 18-40 52-74 (334)
413 1iy2_A ATP-dependent metallopr 96.5 0.0029 1E-07 45.6 4.4 22 19-40 75-96 (278)
414 3umf_A Adenylate kinase; rossm 96.5 0.0018 6.2E-08 45.2 3.1 21 19-39 31-51 (217)
415 2cvh_A DNA repair and recombin 96.5 0.0016 5.3E-08 45.1 2.8 24 16-39 19-42 (220)
416 1sxj_E Activator 1 40 kDa subu 96.5 0.0022 7.4E-08 47.8 3.7 22 18-39 37-58 (354)
417 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0032 1.1E-07 47.2 4.4 26 14-39 21-46 (359)
418 1oxx_K GLCV, glucose, ABC tran 96.4 0.00081 2.8E-08 50.5 1.2 26 16-41 30-55 (353)
419 3n70_A Transport activator; si 96.4 0.0036 1.2E-07 40.6 4.2 27 15-41 22-48 (145)
420 3pxg_A Negative regulator of g 96.4 0.0032 1.1E-07 49.1 4.5 34 7-40 191-224 (468)
421 2og2_A Putative signal recogni 96.4 0.0017 6E-08 48.8 2.9 24 16-39 156-179 (359)
422 1n0w_A DNA repair protein RAD5 96.4 0.0017 5.9E-08 45.6 2.8 25 16-40 23-47 (243)
423 2yhs_A FTSY, cell division pro 96.4 0.0017 5.9E-08 50.8 2.9 24 16-39 292-315 (503)
424 1lv7_A FTSH; alpha/beta domain 96.4 0.0018 6E-08 46.2 2.7 24 17-40 45-68 (257)
425 3syl_A Protein CBBX; photosynt 96.4 0.0038 1.3E-07 45.6 4.6 25 15-39 65-89 (309)
426 1njg_A DNA polymerase III subu 96.4 0.0033 1.1E-07 43.7 4.0 21 19-39 47-67 (250)
427 3nwj_A ATSK2; P loop, shikimat 96.3 0.0021 7.3E-08 45.9 2.9 23 17-39 48-70 (250)
428 2obl_A ESCN; ATPase, hydrolase 96.3 0.0021 7.1E-08 48.2 2.9 29 13-41 67-95 (347)
429 3co5_A Putative two-component 96.3 0.0034 1.1E-07 40.7 3.6 26 15-40 25-50 (143)
430 2grj_A Dephospho-COA kinase; T 96.3 0.0022 7.7E-08 43.8 2.8 24 16-39 11-34 (192)
431 1nij_A Hypothetical protein YJ 96.3 0.0017 5.9E-08 48.0 2.3 22 19-40 6-27 (318)
432 1sxj_D Activator 1 41 kDa subu 96.3 0.004 1.4E-07 46.2 4.3 34 7-40 48-81 (353)
433 1ltq_A Polynucleotide kinase; 96.3 0.0022 7.5E-08 46.8 2.8 22 18-39 3-24 (301)
434 1svm_A Large T antigen; AAA+ f 96.3 0.0031 1.1E-07 47.8 3.6 25 15-39 167-191 (377)
435 1q3t_A Cytidylate kinase; nucl 96.3 0.0031 1.1E-07 44.4 3.4 25 15-39 14-38 (236)
436 3b60_A Lipid A export ATP-bind 96.2 0.0024 8.2E-08 51.2 3.0 26 16-41 368-393 (582)
437 2qgz_A Helicase loader, putati 96.2 0.005 1.7E-07 45.3 4.4 24 17-40 152-175 (308)
438 1fnn_A CDC6P, cell division co 96.2 0.0041 1.4E-07 46.8 4.0 22 19-40 46-67 (389)
439 3cf0_A Transitional endoplasmi 96.2 0.0048 1.6E-07 45.1 4.2 26 15-40 47-72 (301)
440 3euj_A Chromosome partition pr 96.2 0.0025 8.6E-08 49.8 2.8 22 18-39 30-51 (483)
441 3gmt_A Adenylate kinase; ssgci 96.2 0.0032 1.1E-07 44.3 3.1 24 16-39 7-30 (230)
442 4a82_A Cystic fibrosis transme 96.2 0.0022 7.6E-08 51.3 2.5 27 15-41 365-391 (578)
443 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0029 9.8E-08 50.2 3.1 26 16-41 46-71 (538)
444 1p5z_B DCK, deoxycytidine kina 96.2 0.0029 9.9E-08 45.3 2.8 26 15-40 22-47 (263)
445 3b5x_A Lipid A export ATP-bind 96.2 0.0028 9.5E-08 50.8 3.0 27 15-41 367-393 (582)
446 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.0029 9.8E-08 47.7 2.9 22 16-38 23-44 (365)
447 3te6_A Regulatory protein SIR3 96.2 0.003 1E-07 46.7 2.9 30 11-40 39-68 (318)
448 1a7j_A Phosphoribulokinase; tr 96.1 0.002 7E-08 47.0 2.0 24 16-39 4-27 (290)
449 3ozx_A RNAse L inhibitor; ATP 96.1 0.0028 9.4E-08 50.3 2.8 26 16-41 24-49 (538)
450 3uk6_A RUVB-like 2; hexameric 96.1 0.0062 2.1E-07 45.6 4.6 22 18-39 71-92 (368)
451 2yl4_A ATP-binding cassette SU 96.1 0.0025 8.5E-08 51.2 2.5 26 16-41 369-394 (595)
452 3qf4_B Uncharacterized ABC tra 96.1 0.0026 9E-08 51.1 2.7 27 15-41 379-405 (598)
453 1nlf_A Regulatory protein REPA 96.1 0.003 1E-07 45.7 2.7 24 16-39 29-52 (279)
454 2dpy_A FLII, flagellum-specifi 96.1 0.0031 1.1E-07 48.7 2.9 29 13-41 153-181 (438)
455 3b9p_A CG5977-PA, isoform A; A 96.1 0.0031 1.1E-07 45.8 2.7 25 16-40 53-77 (297)
456 2qmh_A HPR kinase/phosphorylas 96.1 0.0038 1.3E-07 42.9 2.8 26 16-41 33-58 (205)
457 3qf4_A ABC transporter, ATP-bi 96.0 0.003 1E-07 50.7 2.7 26 16-41 368-393 (587)
458 3ake_A Cytidylate kinase; CMP 96.0 0.0041 1.4E-07 42.6 3.0 21 19-39 4-24 (208)
459 3t15_A Ribulose bisphosphate c 96.0 0.0044 1.5E-07 45.2 3.3 24 16-39 35-58 (293)
460 3j16_B RLI1P; ribosome recycli 96.0 0.0035 1.2E-07 50.5 2.9 26 16-41 102-127 (608)
461 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0048 1.6E-07 43.8 3.4 24 16-39 38-61 (262)
462 3zvl_A Bifunctional polynucleo 96.0 0.0043 1.5E-07 47.6 3.3 25 15-39 256-280 (416)
463 2dr3_A UPF0273 protein PH0284; 96.0 0.0038 1.3E-07 43.9 2.8 22 17-38 23-44 (247)
464 2px0_A Flagellar biosynthesis 96.0 0.0049 1.7E-07 45.1 3.4 110 16-132 104-253 (296)
465 2qby_A CDC6 homolog 1, cell di 95.9 0.0062 2.1E-07 45.6 3.9 26 15-40 43-68 (386)
466 1pzn_A RAD51, DNA repair and r 95.9 0.004 1.4E-07 46.7 2.7 25 16-40 130-154 (349)
467 1l8q_A Chromosomal replication 95.9 0.004 1.4E-07 45.9 2.7 24 17-40 37-60 (324)
468 3ozx_A RNAse L inhibitor; ATP 95.9 0.004 1.4E-07 49.4 2.8 26 17-42 294-319 (538)
469 3bk7_A ABC transporter ATP-bin 95.9 0.0046 1.6E-07 49.8 3.1 26 16-41 116-141 (607)
470 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0085 2.9E-07 49.5 4.7 36 5-40 195-230 (758)
471 1iqp_A RFCS; clamp loader, ext 95.9 0.009 3.1E-07 43.7 4.5 26 15-40 44-69 (327)
472 3qks_A DNA double-strand break 95.9 0.0048 1.6E-07 42.5 2.8 20 19-38 25-44 (203)
473 1vma_A Cell division protein F 95.9 0.0045 1.5E-07 45.5 2.8 23 17-39 104-126 (306)
474 3d3q_A TRNA delta(2)-isopenten 95.8 0.0048 1.6E-07 46.0 2.8 22 18-39 8-29 (340)
475 2h92_A Cytidylate kinase; ross 95.8 0.0051 1.8E-07 42.6 2.9 23 17-39 3-25 (219)
476 3pxi_A Negative regulator of g 95.8 0.0084 2.9E-07 49.5 4.5 35 6-40 190-224 (758)
477 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0052 1.8E-07 48.8 3.1 27 16-42 311-337 (538)
478 4f4c_A Multidrug resistance pr 95.8 0.0034 1.2E-07 54.9 2.2 25 15-39 1103-1127(1321)
479 2ocp_A DGK, deoxyguanosine kin 95.8 0.0058 2E-07 43.1 3.1 23 17-39 2-24 (241)
480 3bk7_A ABC transporter ATP-bin 95.8 0.0051 1.7E-07 49.5 2.9 27 16-42 381-407 (607)
481 4b4t_M 26S protease regulatory 95.8 0.0092 3.2E-07 46.0 4.2 26 15-40 213-238 (434)
482 1ofh_A ATP-dependent HSL prote 95.8 0.0055 1.9E-07 44.6 2.9 24 16-39 49-72 (310)
483 3crm_A TRNA delta(2)-isopenten 95.7 0.0055 1.9E-07 45.3 2.8 22 18-39 6-27 (323)
484 3a8t_A Adenylate isopentenyltr 95.7 0.0076 2.6E-07 44.9 3.5 23 18-40 41-63 (339)
485 3exa_A TRNA delta(2)-isopenten 95.7 0.0069 2.4E-07 44.6 3.2 23 18-40 4-26 (322)
486 1sxj_B Activator 1 37 kDa subu 95.7 0.011 3.7E-07 43.2 4.4 26 15-40 40-65 (323)
487 2qby_B CDC6 homolog 3, cell di 95.7 0.009 3.1E-07 44.9 4.0 25 16-40 44-68 (384)
488 1c9k_A COBU, adenosylcobinamid 95.7 0.0063 2.2E-07 41.1 2.7 21 20-40 2-22 (180)
489 3v9p_A DTMP kinase, thymidylat 95.7 0.0059 2E-07 42.9 2.6 25 15-39 23-47 (227)
490 4fcw_A Chaperone protein CLPB; 95.7 0.0072 2.5E-07 44.1 3.2 23 18-40 48-70 (311)
491 2chq_A Replication factor C sm 95.7 0.0097 3.3E-07 43.4 3.9 26 15-40 36-61 (319)
492 3cr8_A Sulfate adenylyltranfer 95.7 0.0066 2.3E-07 48.3 3.2 26 15-40 367-392 (552)
493 4b4t_K 26S protease regulatory 95.7 0.011 3.7E-07 45.5 4.2 24 16-39 205-228 (428)
494 3j16_B RLI1P; ribosome recycli 95.6 0.0062 2.1E-07 49.0 2.9 25 19-43 380-404 (608)
495 3pfi_A Holliday junction ATP-d 95.6 0.012 4.3E-07 43.4 4.4 26 15-40 53-78 (338)
496 2r62_A Cell division protease 95.6 0.0047 1.6E-07 44.2 1.9 23 17-39 44-66 (268)
497 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.0066 2.2E-07 44.9 2.7 23 18-40 46-68 (322)
498 4b4t_L 26S protease subunit RP 95.6 0.012 4.1E-07 45.4 4.2 26 15-40 213-238 (437)
499 4edh_A DTMP kinase, thymidylat 95.6 0.0086 2.9E-07 41.6 3.2 24 16-39 5-28 (213)
500 3foz_A TRNA delta(2)-isopenten 95.6 0.007 2.4E-07 44.5 2.8 22 18-39 11-32 (316)
No 1
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=8.6e-38 Score=215.70 Aligned_cols=180 Identities=57% Similarity=1.010 Sum_probs=157.7
Q ss_pred CchhHHHHHHhhhc-ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchh
Q 030192 1 MGLTFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (181)
||..|++++++++. ++.++|+++|++|+|||||++++.++.+....||.+.....+...+..+.+||+||++++...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 89999999999888 89999999999999999999999988887778888888888888899999999999999999999
Q ss_pred hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcc
Q 030192 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++++|++++|+|+++++++.....|+..+.......++|+++|+||+|+.+....+++.+.+....+...+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999999888765557899999999999987767778888777766666788999999
Q ss_pred ccCCCChHHHHHHHHHHhhhc
Q 030192 160 ATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~~~~~ 180 (181)
|++|.|++++++++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999988653
No 2
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.9e-38 Score=216.61 Aligned_cols=178 Identities=47% Similarity=0.884 Sum_probs=154.5
Q ss_pred CchhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (181)
||..|+++++ ++.++.++|+++|++|+|||||++++.++.+..+.||.+.....+...+..+.+|||||++++...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8999999988 888999999999999999999999999888777788888888888888999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++++|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+....++..+++++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999998887654468999999999999876667777777766556667789999999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030192 161 TSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~ 179 (181)
++|.|++++++++.+.+..
T Consensus 160 ~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=7.1e-38 Score=217.41 Aligned_cols=180 Identities=52% Similarity=0.974 Sum_probs=158.7
Q ss_pred CchhHHHHHH--hhhc-ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192 1 MGLTFTKLFS--RLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (181)
||.+++++++ +++. ++.++|+++|++|+|||||++++.++.+....||.+.....+...+..+.+|||||++++...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 7777777777 6777 789999999999999999999999888877788888888888889999999999999999999
Q ss_pred hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030192 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
+..+++++|++++|+|+++++++.....++..++......++|+++|+||+|+.+....+++.+.+....++..++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999999888766678999999999999887677778877776666777889999
Q ss_pred ccccCCCChHHHHHHHHHHhhhc
Q 030192 158 TCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
+||++|.|++++++++.+.+.++
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ccCCCccCHHHHHHHHHHHHHhc
Confidence 99999999999999999988764
No 4
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=6.3e-37 Score=212.04 Aligned_cols=178 Identities=47% Similarity=0.880 Sum_probs=147.9
Q ss_pred CchhHHHHHHhhhc-ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchh
Q 030192 1 MGLTFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (181)
|| .|+ ++++++. ++.++|+++|++|+|||||++++.+.......||.+.....+...+..+.+|||||++++...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 56 455 5566665 78899999999999999999999988855678888888888888999999999999999999999
Q ss_pred hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcc
Q 030192 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++++|++++|+|+++++++.....|+..++......++|+++|+||+|+.+....+++.+.+....++..+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999998888765556899999999999988777777777776665666788999999
Q ss_pred ccCCCChHHHHHHHHHHhhhc
Q 030192 160 ATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~~~~~ 180 (181)
|++|.|++++++++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=2.1e-37 Score=215.84 Aligned_cols=176 Identities=81% Similarity=1.298 Sum_probs=152.6
Q ss_pred HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc
Q 030192 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (181)
++++++++..++.++|+++|++|+|||||++++.++.+....||.+.....+...++.+.+||+||++++...+..++++
T Consensus 17 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 96 (192)
T 2b6h_A 17 RGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQN 96 (192)
T ss_dssp CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHT
T ss_pred HHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence 34566778888999999999999999999999999888777888888888888899999999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+|++++|+|+++++++.....|+..++......++|+++|+||+|+.+....+++.+.+....++..+++++++||++|.
T Consensus 97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 99999999999999999999999988876555689999999999998776777888888777777778899999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030192 165 GLYEGLDWLSNNIASK 180 (181)
Q Consensus 165 gv~~~~~~i~~~~~~~ 180 (181)
|++++|+++.+.+.++
T Consensus 177 gi~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 177 GLYDGLDWLSHELSKR 192 (192)
T ss_dssp THHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988764
No 6
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1.3e-35 Score=202.53 Aligned_cols=166 Identities=58% Similarity=1.017 Sum_probs=150.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
++.++|+++|++|+|||||++++.+..+....||.+.....+......+.+|||||++++...+..+++++|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 46799999999999999999999998888788888888888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
++++++.....++..++......++|+++|+||+|+.+....+++...+....++..+++++++||++|.|++++|+++.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999999888765556899999999999988777778888777766777788999999999999999999999
Q ss_pred HHhhhc
Q 030192 175 NNIASK 180 (181)
Q Consensus 175 ~~~~~~ 180 (181)
+.+.++
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 988764
No 7
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=4.2e-36 Score=203.70 Aligned_cols=163 Identities=91% Similarity=1.401 Sum_probs=144.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
++|+++|++|+|||||++++.++.+....||.+.....+...++.+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988887778888888788888899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
+++.....|+..+.......+.|+++|+||+|+.+....+++...+....++..+++++++||++|.|++++|+++.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999998888765556899999999999987766777888777766777788999999999999999999999988
Q ss_pred hhc
Q 030192 178 ASK 180 (181)
Q Consensus 178 ~~~ 180 (181)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 654
No 8
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=4.9e-36 Score=207.02 Aligned_cols=173 Identities=47% Similarity=0.845 Sum_probs=148.9
Q ss_pred HHHhhhc--ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccc
Q 030192 8 LFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 8 ~~~~~~~--~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (181)
+++++.. .+.++|+++|++|+|||||++++.+..+....||.+.....+...++.+.+|||||++++...+..+++.+
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 84 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT 84 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 3444444 67899999999999999999999998877778888888778888899999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
|++++|+|+++++++.....|+..++......++|+++|+||+|+.+....+++.+.+....+...+++++++||++|.|
T Consensus 85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (181)
T 1fzq_A 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEG 164 (181)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCC
Confidence 99999999999999999999988887765556899999999999987767777777776665666778999999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030192 166 LYEGLDWLSNNIASK 180 (181)
Q Consensus 166 v~~~~~~i~~~~~~~ 180 (181)
++++|+++.+.+.++
T Consensus 165 i~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 165 VQDGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887653
No 9
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=6e-35 Score=203.04 Aligned_cols=171 Identities=37% Similarity=0.599 Sum_probs=140.0
Q ss_pred HHHHHhh-hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc
Q 030192 6 TKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 6 ~~~~~~~-~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (181)
.+.++.. ...+.++|+++|++|+|||||++++.++.+..+.||.+.....+...++.+.+|||||+++++..+..++++
T Consensus 11 ~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 1m2o_B 11 RDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPE 90 (190)
T ss_dssp -------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTT
T ss_pred HHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhc
Confidence 3333433 335678999999999999999999999888777888888888888889999999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc-------ccCcceEEEE
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-------LRQRHWYIQS 157 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 157 (181)
+|++++|+|+++++++.....|+..+.......++|+++|+||+|+.+....+++.+.+.... ....++++++
T Consensus 91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T 1m2o_B 91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM 170 (190)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEE
Confidence 999999999999999999999998888765556899999999999987666677777665432 2345678999
Q ss_pred ccccCCCChHHHHHHHHHH
Q 030192 158 TCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~ 176 (181)
+||++|.|++++|+++.+.
T Consensus 171 ~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 171 CSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred eECCcCCCHHHHHHHHHhh
Confidence 9999999999999999764
No 10
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=5.2e-35 Score=201.75 Aligned_cols=164 Identities=48% Similarity=0.867 Sum_probs=143.7
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
...+.++|+++|++|+|||||+++|.+..+....++.+.....+...+..+.+||+||++++...+..+++++|++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 33578999999999999999999999998866778888888888888999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
|+++++++.....++..+.......++|+++|+||+|+.+....+++.+.+....++..+++++++||++|.|++++|++
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW 176 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 99999999999999998887654468999999999999877667778777776666677889999999999999999999
Q ss_pred HHHH
Q 030192 173 LSNN 176 (181)
Q Consensus 173 i~~~ 176 (181)
+.+.
T Consensus 177 l~~~ 180 (181)
T 2h17_A 177 MMSR 180 (181)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 8764
No 11
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=6e-35 Score=202.61 Aligned_cols=167 Identities=31% Similarity=0.676 Sum_probs=146.9
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.++.++|+++|++|+|||||+++|.+..+. ...||.+..+..+...++.+.+||+||++++...+..+++++|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 357899999999999999999999988876 4578888888888889999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
|+++++++.....|+..++......++|+++|+||+|+.+....+++.+.+....+...+++++++||++|.|++++|++
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 99999999999999998887655568999999999999876666777777776666667889999999999999999999
Q ss_pred HHHHhhhc
Q 030192 173 LSNNIASK 180 (181)
Q Consensus 173 i~~~~~~~ 180 (181)
+.+.+.++
T Consensus 179 l~~~~~~~ 186 (188)
T 1zd9_A 179 LIQHSKSR 186 (188)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhh
Confidence 99887653
No 12
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=7.1e-35 Score=203.92 Aligned_cols=170 Identities=29% Similarity=0.598 Sum_probs=135.2
Q ss_pred HHHhh-hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccccc
Q 030192 8 LFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 8 ~~~~~-~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (181)
+++.+ ...+.++|+++|++|+|||||++++.++.+..+.||.+.....+...++.+.+|||||+++++..+..+++.+|
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 94 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAIN 94 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCS
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCC
Confidence 44443 34677899999999999999999999988877778888777788888899999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------c---cCcceE
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------L---RQRHWY 154 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~~ 154 (181)
++++|+|+++++++.....|+..++......++|+++|+||+|+.+....+++.+.+.... + ...+++
T Consensus 95 ~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 95 GIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEE
Confidence 9999999999999999999999888765556899999999999987656666666655322 1 125678
Q ss_pred EEEccccCCCChHHHHHHHHHHh
Q 030192 155 IQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 155 ~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
+++|||++|.|++++|+++.+.+
T Consensus 175 ~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 175 VFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 99999999999999999998754
No 13
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=4.5e-35 Score=204.55 Aligned_cols=170 Identities=36% Similarity=0.644 Sum_probs=144.4
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc--cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
..+.....+|+++|++|+|||||+++|.+..+... .+|.+.....+....+.+.+|||||++++...+..+++++|++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 34556889999999999999999999999987753 7899988888889999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCC-------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccc
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDEL-------RDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCA 160 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~ 160 (181)
++|||+++++++.....|+..++..... .++|+++|+||+|+.+....+++.+.+....+ +..+++++++||
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 170 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG 170 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence 9999999999999999999888775322 27899999999999888777788887776554 567889999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030192 161 TSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~~ 180 (181)
++|.|++++|+++.+.+.++
T Consensus 171 ~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 171 LKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TTTBTHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHH
Confidence 99999999999999987653
No 14
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.6e-36 Score=214.51 Aligned_cols=160 Identities=16% Similarity=0.346 Sum_probs=121.9
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EE--ECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
+.+.+||+++|++|||||||+++|..+.+.. +.||.+..+.. +. ...+.+++|||+|+++|..++..+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 4577999999999999999999999998874 47888765433 22 3557899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
++|||+++++++..+..|+..+..... .++|++||+||+|+.+.. ..++.. .+++..+++|++|||++|.||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~-----~~a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGE-----RKAKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHH-----HHHHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHh-----hHHHHhCCeeEEEeCCCCcCH
Confidence 999999999999999999988765433 579999999999997643 222221 122234457999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030192 167 YEGLDWLSNNIAS 179 (181)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (181)
+++|+.|++.+..
T Consensus 164 ~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 164 KQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=197.39 Aligned_cols=166 Identities=43% Similarity=0.790 Sum_probs=141.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC-c-ccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE-I-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
..+.++|+++|++|+|||||+++|.+.. + ....+|.+.....+...+..+.+|||||++++...+..+++++|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 3578999999999999999999999887 3 3557788888788888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|+++++++.....|+..+...... .++|+++|+||+|+.+....+++.+.+....+...+++++++||++|.|++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 9999999999999999888876544 57999999999999877667777776665555556789999999999999999
Q ss_pred HHHHHHHhhh
Q 030192 170 LDWLSNNIAS 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|+++.+.+.+
T Consensus 178 ~~~l~~~i~~ 187 (190)
T 2h57_A 178 VDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=213.71 Aligned_cols=167 Identities=91% Similarity=1.388 Sum_probs=148.5
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.++.++|+++|++|+|||||+++|.+..+....||.+.....+...++.+.+|||||++++...+..+++.+|++++|||
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35678999999999999999999999988877789999988999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i 173 (181)
+++++++.....++..++......++|+++|+||+|+.+....+++...+....++..+++++++||++|.|++++|+.|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999999887666789999999999999887888899989888888889999999999999999999999
Q ss_pred HHHhhhc
Q 030192 174 SNNIASK 180 (181)
Q Consensus 174 ~~~~~~~ 180 (181)
.+.+.++
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9988764
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=2.2e-32 Score=215.08 Aligned_cols=166 Identities=73% Similarity=1.257 Sum_probs=152.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
.+.++|+++|.+|+|||||+++|.+..+....||.+..+..+...++.+.+|||||++++...+..+++++|++|+|||+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~ 399 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 399 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEET
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 46789999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
++++++.....++..++......++|+++|+||+|+.+....+++...+.....+..+++++++||++|.|++++|++|.
T Consensus 400 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 479 (497)
T 3lvq_E 400 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 479 (497)
T ss_dssp TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998876667899999999999988777788888888887777889999999999999999999999
Q ss_pred HHhhhc
Q 030192 175 NNIASK 180 (181)
Q Consensus 175 ~~~~~~ 180 (181)
+.+.++
T Consensus 480 ~~~~~~ 485 (497)
T 3lvq_E 480 SNYKSK 485 (497)
T ss_dssp HHCC--
T ss_pred HHHHhc
Confidence 987654
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=9.7e-33 Score=187.45 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=105.8
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.+||+++|++|+|||||++++.+.......++.+.... . +....+.+.+||+||++++...+..+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998776555555544432 2 22345689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
+++++++.....|+..+.......++|+++|+||+|+.+.... ++... + ....+++++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-C----AVVFDCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH-H----HHHTTCEEEECBGGGTBSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH-H----HHHhCCcEEEeccCCCCCHHHHHH
Confidence 9999999999999998887665578999999999999764322 22111 1 122345799999999999999999
Q ss_pred HHHHHhhhc
Q 030192 172 WLSNNIASK 180 (181)
Q Consensus 172 ~i~~~~~~~ 180 (181)
++.+.+.++
T Consensus 157 ~l~~~~~~~ 165 (166)
T 3q72_A 157 GVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988754
No 19
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.98 E-value=1.3e-32 Score=187.20 Aligned_cols=163 Identities=21% Similarity=0.408 Sum_probs=125.2
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++|+++|++|+|||||++++.+..+. ...|+.+... ..+.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 589999999999999999999988865 3456666544 33333 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.....++.........+..+++++++||++|.|++++|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999988888877776543 25799999999999865411111110011111223345799999999999999999
Q ss_pred HHHHHhhhc
Q 030192 172 WLSNNIASK 180 (181)
Q Consensus 172 ~i~~~~~~~ 180 (181)
++.+.+.++
T Consensus 162 ~l~~~i~~k 170 (170)
T 1ek0_A 162 GIGEKIPLK 170 (170)
T ss_dssp HHHTTSCCC
T ss_pred HHHHHHhhC
Confidence 999887654
No 20
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.98 E-value=4.5e-32 Score=189.96 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=125.1
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccc
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (181)
+..+..+.++|+++|++|+|||||+++|.+..+.. ..++.+..+. .+....+.+.+|||||++++...+..+++.+
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 44555788999999999999999999999988764 3556654432 2334678999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCC
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
|++++|||+++++++.....|+..+.......++|+++|+||+|+.+.... ++... ..+..+++++++||++|
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~ 171 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK-----LAESWGATFMESSAREN 171 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECCTTCH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH-----HHHHhCCeEEEEeCCCC
Confidence 999999999999999999999888887665568999999999998754322 22111 11223457999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030192 164 EGLYEGLDWLSNNIASK 180 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~~ 180 (181)
.|++++|.++.+.+.++
T Consensus 172 ~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 172 QLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988654
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.98 E-value=3.7e-32 Score=187.19 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=126.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.++.+.. ..++.+..+. .+...+ +.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4567999999999999999999999877653 4566665542 233443 78899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||+++++++.....|+..+.......++|+++|+||+|+.+... .++.... .+..+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL-----AESWNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHH-----HHHhCCcEEEEecCCCCCHH
Confidence 9999999999999999888887765556899999999999865432 2222221 12234579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|+++.+.+.++
T Consensus 158 ~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 158 DVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 22
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=1.9e-31 Score=182.46 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=114.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEEC--CEEEEEEEcCCCCC--cccchhhccccccEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDK--IRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~--~~~~~~~~~~~~d~~ 88 (181)
+..++|+++|++|+|||||+++|.+..+....++.+.+. ..+... .+.+.+||+||+++ +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 456899999999999999999999988765555555443 334443 45889999999987 566677888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
++|||++++.++.....|+..+.......++|+++|+||+|+.+... .++... .....+++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-----CAVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-----HHHHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-----HHHHcCCeEEEEecCCCCCH
Confidence 99999999999999988887776654445799999999999976432 222211 11223457999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030192 167 YEGLDWLSNNIAS 179 (181)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (181)
+++|+++.+.+.+
T Consensus 157 ~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 157 AELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 23
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=7.2e-31 Score=181.57 Aligned_cols=158 Identities=14% Similarity=0.235 Sum_probs=122.0
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+.+.+||+++|++|+|||||++++.++.+.. ..|+.+.....+...+ +.+.+|||+|++++. +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 44678999999999999999999999988764 3455443333444444 678889999998876 678899999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCcccCc-ceEEEEccccCCC
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQR-HWYIQSTCATSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~ 164 (181)
+|||++++.+++.+..|+..+.......++|+++|+||+|+.+ ....++..+.. +.. .++++++||++|.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS-----TDLKRCTYYETCATYGL 165 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH-----HHTTTCEEEEEBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH-----HHcCCCeEEEecCCCCC
Confidence 9999999999999988888887765446799999999999842 12222222211 111 2478999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030192 165 GLYEGLDWLSNNIASK 180 (181)
Q Consensus 165 gv~~~~~~i~~~~~~~ 180 (181)
|++++|+++.+.+.++
T Consensus 166 gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 166 NVERVFQDVAQKVVAL 181 (184)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987653
No 24
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=4e-31 Score=179.43 Aligned_cols=158 Identities=20% Similarity=0.289 Sum_probs=124.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.++.+.. ..++.+..+.. +. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 45899999999999999999999887753 45666544432 22 2457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccC-cceEEEEccccCCCChHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~gv~~ 168 (181)
||+++++++.....|+..+.......++|+++|+||+|+.+... .++..... +. .+.+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-----RQWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTSCEEEECBTTTTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHH-----HHccCCcEEEecCCCCCCHHH
Confidence 99999999988888877776644446899999999999975432 22222211 11 245799999999999999
Q ss_pred HHHHHHHHhh
Q 030192 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~~~ 178 (181)
+++++.+.+.
T Consensus 157 l~~~l~~~i~ 166 (167)
T 1c1y_A 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 25
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=4.7e-32 Score=184.02 Aligned_cols=160 Identities=19% Similarity=0.301 Sum_probs=124.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.+..+.. ..++.+..+. .+... .+.+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 56899999999999999999999888653 3455554432 23333 46899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
||+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHH
Confidence 9999999999888888877765544579999999999987542 222332222 223457999999999999999
Q ss_pred HHHHHHHhhhc
Q 030192 170 LDWLSNNIASK 180 (181)
Q Consensus 170 ~~~i~~~~~~~ 180 (181)
|+++.+.+.++
T Consensus 158 ~~~l~~~i~~~ 168 (168)
T 1u8z_A 158 FFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999988764
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=5.5e-31 Score=179.12 Aligned_cols=160 Identities=20% Similarity=0.365 Sum_probs=126.3
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
+.+.++|+++|++|+|||||+++|.++.+.. ..++.+... ..+.. ..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3567999999999999999999999887664 355665544 23333 357899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+.. ..++.... .+..+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSY-----ADDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCH
Confidence 999999999999888888777665432 579999999999986532 22232221 1224567999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030192 167 YEGLDWLSNNIAS 179 (181)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (181)
+++|+++.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 157 NEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 27
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.5e-32 Score=192.10 Aligned_cols=166 Identities=18% Similarity=0.341 Sum_probs=116.6
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhcccc
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (181)
++...++.++|+++|++|+|||||++++.+..+. ...++.+..+ ..+... .+.+.+||+||++++...+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 3455567899999999999999999999988865 3455555433 334443 4689999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC------CC--CHhHHHhhhCCCcccCcceEEE
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN------AM--NAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~------~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
+|++++|||++++.++.....|+..+... ...++|+++|+||+|+.+ .. ..++... ..+..+++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-----LAMTYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH-----HHHHHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHH-----HHHHcCCeEE
Confidence 99999999999999988888776655432 224789999999999852 11 1111111 1222355799
Q ss_pred EccccCCCChHHHHHHHHHHhhhcC
Q 030192 157 STCATSGEGLYEGLDWLSNNIASKA 181 (181)
Q Consensus 157 ~~S~~~~~gv~~~~~~i~~~~~~~~ 181 (181)
++||++|.|++++|.++.+.+.++|
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~~~ 199 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKKRT 199 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC--
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999998876
No 28
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=1.3e-30 Score=179.75 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=126.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
....++|+++|++|+|||||+++|.+..+.. ..++.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4567999999999999999999999887663 4555554432 23333 456778999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEcccc-CCCCh
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCAT-SGEGL 166 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~gv 166 (181)
+|||+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||+ +|.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHhCCeEEEeccCCCCCCH
Confidence 999999999999998888877665444689999999999987632 222222111 1123468999999 99999
Q ss_pred HHHHHHHHHHhhhc
Q 030192 167 YEGLDWLSNNIASK 180 (181)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (181)
+++|+++.+.+.++
T Consensus 170 ~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 170 DKTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999988764
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=6.2e-31 Score=180.69 Aligned_cols=162 Identities=18% Similarity=0.269 Sum_probs=129.0
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
++.+.++|+++|++|+|||||+++|.+..+.. ..++.+..+. .+... .+.+.+||+||++++...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 34677999999999999999999999987664 3556655443 23444 36899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
++|||+++++++.....|+..++......++|+++|+||+|+.+... .++... + ....+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-F----GASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHcCCeEEEecCCCCCCH
Confidence 99999999999999988888876654446799999999999876432 222221 1 1223557999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030192 167 YEGLDWLSNNIAS 179 (181)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (181)
+++|+++.+.+.+
T Consensus 160 ~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 160 DEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 30
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=5e-31 Score=186.49 Aligned_cols=161 Identities=17% Similarity=0.185 Sum_probs=122.1
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.....+||+++|++|+|||||+++|.++.+... .||.+..+. .+....+.+.+|||+|++++...+..+++++|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 345789999999999999999999999887643 677766553 2334568999999999999999999999999999
Q ss_pred EEEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcccCcce
Q 030192 89 IFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (181)
++|||+++++++... ..|+..+... . .++|+++|+||+|+.+. ...++... .++..++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~ 175 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDY-C-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA-----IAKQLGA 175 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHH-C-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-----HHHHHTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH-----HHHHcCC
Confidence 999999999999884 5555544432 2 57999999999998642 11211111 1122344
Q ss_pred -EEEEccccCCCC-hHHHHHHHHHHhhhc
Q 030192 154 -YIQSTCATSGEG-LYEGLDWLSNNIASK 180 (181)
Q Consensus 154 -~~~~~S~~~~~g-v~~~~~~i~~~~~~~ 180 (181)
++++|||++|.| ++++|+.+.+.+.++
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 799999999998 999999999987653
No 31
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=3.8e-31 Score=182.37 Aligned_cols=159 Identities=20% Similarity=0.367 Sum_probs=99.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...|+.+..+ ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45689999999999999999999988765 3456666544 3445544 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++.....|+..+.... ..++|+++|+||+|+.+... .++.... .+..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKL-----ALDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHH-----HHHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence 9999999999988888777665532 25799999999999976432 2222221 12234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|.++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 32
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.4e-30 Score=179.90 Aligned_cols=161 Identities=24% Similarity=0.384 Sum_probs=127.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|.+..+. ...++.+..+ ..+.. ..+.+.+|||||++++...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45689999999999999999999998875 3456666544 33333 3578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
+|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++.... ++..+++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF-----ARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHHH
Confidence 9999999999988888887776654446799999999999965332 2222221 122345799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030192 169 GLDWLSNNIASK 180 (181)
Q Consensus 169 ~~~~i~~~~~~~ 180 (181)
+|+++.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 33
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=7.4e-31 Score=178.58 Aligned_cols=159 Identities=23% Similarity=0.387 Sum_probs=120.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|+|||||++++.+..+. ...++.+..+ ..+... .+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4589999999999999999999988875 3455655443 334433 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++.... .+..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEAL-----AKELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHH-----HHHHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHH-----HHHcCCeEEEEECCCCCCHHHH
Confidence 999999988888888776665532 25799999999999954332 2222211 1122346899999999999999
Q ss_pred HHHHHHHhhhc
Q 030192 170 LDWLSNNIASK 180 (181)
Q Consensus 170 ~~~i~~~~~~~ 180 (181)
|+++.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 34
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=7.5e-31 Score=182.70 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=124.1
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCcccc-----------cCccceeEEE-----EEECCEEEEEEEcCCCCCcc
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVET-----VEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~-----~~~~~~~~~i~D~~g~~~~~ 75 (181)
...+..+||+++|++|+|||||++.+.+.....+ .||.+.++.. +....+.+.+|||||++++.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3446789999999999999999977765543332 2344444322 22345789999999999999
Q ss_pred cchhhccccccEEEEEEECC------CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc
Q 030192 76 PLWRHYFQNTQGLIFVVDSN------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 149 (181)
..+..+++++|++++|||++ +.+++..+..|+... .....++|+++|+||+|+.+....++..+....
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---- 162 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP---- 162 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT----
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHh----
Confidence 99999999999999999999 445666666666665 223468999999999999877666666655443
Q ss_pred Ccce-EEEEccccCCCChHHHHHHHHHHhhhc
Q 030192 150 QRHW-YIQSTCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 150 ~~~~-~~~~~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
.++ +++++||++|.|++++|+++.+.+.++
T Consensus 163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 163 -EGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp -TCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 344 689999999999999999999988653
No 35
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=9.2e-31 Score=181.08 Aligned_cols=161 Identities=20% Similarity=0.316 Sum_probs=122.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++|+|||||+++|.+..+... .++.+... ..+... .+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999998887543 44444332 233333 4568889999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|||++++.++.....|+..+.......++|+++|+||+|+.+.....+....+ .+..+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDL----ARSYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHH----HHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHH----HHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999998888888775555689999999999997543222221111 11123468999999999999999
Q ss_pred HHHHHHhhh
Q 030192 171 DWLSNNIAS 179 (181)
Q Consensus 171 ~~i~~~~~~ 179 (181)
+++.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 36
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=1.1e-30 Score=181.77 Aligned_cols=161 Identities=22% Similarity=0.321 Sum_probs=123.4
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.++.++|+++|++|+|||||++++.+..+.. ..+|.+..+.. +.. ..+.+.+|||||++++...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 3567999999999999999999999988763 45666655433 233 3467899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceE-EEEccccCCC
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWY-IQSTCATSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 164 (181)
+|||+++++++......|...+... ..++|+++|+||+|+.+. ...++..... +..++. ++++||++|.
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-----QKLGCVAYIEASSVAKI 173 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-----HHHTCSCEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHH-----HhcCCCEEEEeecCCCC
Confidence 9999999999988755555544432 257999999999998752 2222222211 112233 8899999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030192 165 GLYEGLDWLSNNIASK 180 (181)
Q Consensus 165 gv~~~~~~i~~~~~~~ 180 (181)
|++++|+++.+.+.++
T Consensus 174 gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 174 GLNEVFEKSVDCIFSN 189 (194)
T ss_dssp SHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988764
No 37
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=1.2e-30 Score=181.16 Aligned_cols=162 Identities=20% Similarity=0.366 Sum_probs=128.3
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEEC-----------CEEEEEEEcCCCCCcccc
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYK-----------NISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~-----------~~~~~i~D~~g~~~~~~~ 77 (181)
..+..++|+++|++|+|||||+++|.+..+. ...++.+..+. .+... .+.+.+||+||++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3456799999999999999999999988765 34667776554 33333 469999999999999999
Q ss_pred hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEE
Q 030192 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (181)
+..+++++|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCCE
Confidence 999999999999999999999998888888777665444679999999999997532 222222211 1123468
Q ss_pred EEccccCCCChHHHHHHHHHHhhh
Q 030192 156 QSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 156 ~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
+++||++|.|++++|+++.+.+.+
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.9e-30 Score=178.90 Aligned_cols=167 Identities=20% Similarity=0.317 Sum_probs=127.1
Q ss_pred HHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE--EE--ECCEEEEEEEcCCCCCcccchhhc
Q 030192 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~ 81 (181)
.++.....++.++|+++|++|+|||||+++|.+..+. ...++.+.+... +. .....+.+||+||++++...+..+
T Consensus 13 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 92 (192)
T 2fg5_A 13 GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92 (192)
T ss_dssp --------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHH
T ss_pred ccccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHh
Confidence 3444444567899999999999999999999998865 456777765433 22 256789999999999999999999
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEcc
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
++.+|++++|||++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..+.. +..+++++++|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~S 166 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETS 166 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECB
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEe
Confidence 999999999999999999988888776665432 2579999999999997532 233333322 23356899999
Q ss_pred ccCCCChHHHHHHHHHHhhh
Q 030192 160 ATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~~~~ 179 (181)
|++|.|++++++++.+.+.+
T Consensus 167 a~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC-
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 39
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=3e-31 Score=180.53 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=114.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcccc---cCccceeEEEEEEC--CEEEEEEEcCCCCCccc-chhhccccccEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK--NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~ 90 (181)
.++|+++|++|+|||||++++.+...... .++.......+... .+.+.+||+||++++.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999987664421 22333333334443 46889999999998876 67777889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|||+++++++.....|+..+.......++|+++|+||+|+.+.. ..++.... .+..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL-----AGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHH-----HHHcCCcEEEecCccCCCHHH
Confidence 99999999999999999888776554589999999999987432 22222211 122345789999999999999
Q ss_pred HHHHHHHHhhhc
Q 030192 169 GLDWLSNNIASK 180 (181)
Q Consensus 169 ~~~~i~~~~~~~ 180 (181)
+|+++.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 40
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=181.97 Aligned_cols=160 Identities=21% Similarity=0.369 Sum_probs=121.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|.+..+ ..+...+ +.+.+||+||++++...+..+++.+|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45689999999999999999999988875 3456665443 4455544 79999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcce-EEEEccccCCCCh
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW-YIQSTCATSGEGL 166 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gv 166 (181)
+|||+++++++.....|+..+.... ..++|+++|+||+|+.+.. ..++..+.. +..++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCCH
Confidence 9999999999988888877765533 2579999999999997532 233332221 12344 7899999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030192 167 YEGLDWLSNNIASK 180 (181)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (181)
+++|+++.+.+.++
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=3e-31 Score=182.03 Aligned_cols=162 Identities=17% Similarity=0.297 Sum_probs=124.4
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccce--eEEEEEECC---EEEEEEEcCCCCCcccchhhccccccE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~--~~~~~~~~~---~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
.++.++|+++|++|+|||||+++|.+..+. ...||.+. ....+...+ +.+.+||+||++++...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 356799999999999999999999988775 33566653 344555554 899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+++|||+++++++.....|+..+..... ...+|+++|+||+|+.+.. ..++.... .+..+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRF-----CQENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHH-----HHHcCCcEEEEeCCCC
Confidence 9999999999898888777665544210 1234589999999997532 22222221 1223457899999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030192 164 EGLYEGLDWLSNNIASK 180 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~~ 180 (181)
.|++++|+++.+.+.++
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988764
No 42
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.1e-32 Score=188.22 Aligned_cols=167 Identities=17% Similarity=0.238 Sum_probs=124.6
Q ss_pred HHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EEE--CCEEEEEEEcCCCCCcccchhhccc
Q 030192 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (181)
++++....+.++|+++|++|+|||||+++|.+..+.. ..++.+..+.. +.. ..+.+.+||+||+++ ...+..+++
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~ 97 (196)
T 2atv_A 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMR 97 (196)
T ss_dssp --------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred chhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence 4556666788999999999999999999999988763 35666554432 333 347899999999988 777888899
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEcccc
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
.+|++++|||+++++++.....|+..+.......++|+++|+||+|+.+.. ..++.... .+..+++++++||+
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~ 172 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL-----ATELACAFYECSAC 172 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSEEEECCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH-----HHHhCCeEEEECCC
Confidence 999999999999999998888887776654444679999999999987532 22222211 11234579999999
Q ss_pred CCC-ChHHHHHHHHHHhhhc
Q 030192 162 SGE-GLYEGLDWLSNNIASK 180 (181)
Q Consensus 162 ~~~-gv~~~~~~i~~~~~~~ 180 (181)
+|. |++++|+++.+.+.++
T Consensus 173 ~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 173 TGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp TCTTCHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHhh
Confidence 999 9999999999988654
No 43
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=4.7e-30 Score=178.64 Aligned_cols=160 Identities=20% Similarity=0.366 Sum_probs=125.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+... ..+...+ +.+.+||+||++++...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45689999999999999999999998865 3456655443 4445544 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++.....|+..+..... .++|+++|+||+|+.+.... ++.... .+..+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEF-----ADSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHHHH-----HHHcCCcEEEEeCCCCCCHH
Confidence 99999999999888887766654322 57999999999999765322 222111 11123468999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|.++.+.+.++
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 44
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=3.7e-30 Score=181.78 Aligned_cols=164 Identities=24% Similarity=0.302 Sum_probs=121.0
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEEC---CEEEEEEEcCCCCCccc-chhhccccccEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK---NISFTVWDVGGQDKIRP-LWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.+..+....++.......+... .+.+.+|||||++++.. .+..+++.+|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 3567999999999999999999999988876666666666556655 68999999999999987 7888899999999
Q ss_pred EEEECCCcc-cHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----------------------
Q 030192 90 FVVDSNDRD-RVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG---------------------- 144 (181)
Q Consensus 90 ~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------------------- 144 (181)
+|||+++.. ++.....+|...+.. ....++|+++|+||+|+.+....+++...+.
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998753 456666667666543 1224799999999999987654433322211
Q ss_pred -C--------Cccc-Cc--ceEEEEccccCC------CChHHHHHHHHHHh
Q 030192 145 -L--------HSLR-QR--HWYIQSTCATSG------EGLYEGLDWLSNNI 177 (181)
Q Consensus 145 -~--------~~~~-~~--~~~~~~~S~~~~------~gv~~~~~~i~~~~ 177 (181)
. .+.. .. ++++++|||++| .|++++|+++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0 0111 11 788999999999 99999999998753
No 45
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.9e-31 Score=183.79 Aligned_cols=159 Identities=19% Similarity=0.328 Sum_probs=124.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||+++|.+..+. ...++.+..+ ..+... .+.+.+|||||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988876 3466666554 344444 368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+... .++.... .+..+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEF-----SEAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888776665432 25799999999999875322 2222211 12234568999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 46
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-30 Score=177.66 Aligned_cols=160 Identities=18% Similarity=0.391 Sum_probs=118.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccceeEEE--EEEC--CEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~--~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+..+.. +... .+.+.+||+||++++...+..+++++|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 56799999999999999999999998874 346676666543 2333 46899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
++|+|++++.++.....|+..+..... .++|+++|+||+|+.+... .++.... .+..+++++++||++|.|+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKL-----AKEYGLPFMETSAKTGLNV 161 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCH
Confidence 999999999888888887766655322 5799999999999976432 2222211 1122446899999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030192 167 YEGLDWLSNNIASK 180 (181)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (181)
+++|+++.+.+.++
T Consensus 162 ~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 162 DLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 47
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=6.6e-31 Score=182.25 Aligned_cols=160 Identities=19% Similarity=0.369 Sum_probs=125.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+..+. .+.. ..+.+.+||+||++++...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 45689999999999999999999998875 34566665543 3333 3568999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++.....|+..+.... ..++|+++|+||+|+.+... .++..+. .+..+++++++||++|.|++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRL-----ADDLGFEFFEASAKENINVK 173 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHH-----HHHcCCeEEEEECCCCCCHH
Confidence 9999999989888888776665432 35799999999999975432 2222211 11224479999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|+++.+.+.++
T Consensus 174 ~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 174 QVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 48
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.7e-30 Score=179.45 Aligned_cols=159 Identities=20% Similarity=0.349 Sum_probs=125.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+...+ +.+.+||+||++++...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 456899999999999999999999888763 456665443 3344444 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++.....|+..+..... .++|+++|+||+|+.+.. ..++.... ++..+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRF-----AQENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence 99999999999888887766544322 579999999999996532 22222221 22345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 49
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=3e-30 Score=177.43 Aligned_cols=161 Identities=19% Similarity=0.349 Sum_probs=125.6
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+...++|+++|++|+|||||++++.+..+... .++.+..+ ..+... .+.+.+||+||++++...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 345679999999999999999999998887643 45555443 333333 5689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
+++|+|++++.++.....|+..+..... .++|+++|+||+|+.+... .++..... +..+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence 9999999999999888888777765432 5799999999999965432 23332221 22345799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030192 166 LYEGLDWLSNNIAS 179 (181)
Q Consensus 166 v~~~~~~i~~~~~~ 179 (181)
++++|+++.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (181)
T 2efe_B 162 VKEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987754
No 50
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1.4e-30 Score=177.27 Aligned_cols=159 Identities=19% Similarity=0.321 Sum_probs=118.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||++++.+..+. ...++.+..+. .+.. ..+.+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46789999999999999999999988775 34666665543 3333 4568999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++.... .+..+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESY-----AESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHH-----HHHcCCeEEEecCCCCCCHH
Confidence 9999999999988887776654321 2469999999999997632 22222221 12234578999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 51
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=3.5e-31 Score=181.62 Aligned_cols=161 Identities=20% Similarity=0.334 Sum_probs=124.9
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
....++|+++|++|+|||||++++.+..+.. ..++.+... ..+.. ..+.+.+||+||++++...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 3567999999999999999999999888754 355555443 33344 346899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
++|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..+.. +..+++++++||++|.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 99999999988888887776655432 2579999999999996532 222332221 223457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030192 167 YEGLDWLSNNIASK 180 (181)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (181)
+++|+++.+.+.++
T Consensus 166 ~~l~~~l~~~i~~~ 179 (179)
T 1z0f_A 166 EDAFLEAAKKIYQN 179 (179)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999988653
No 52
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=7e-31 Score=180.42 Aligned_cols=158 Identities=22% Similarity=0.399 Sum_probs=124.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||++++.+..+. ...++.+... ..+...+ +.+.+||+||++++...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999988765 3456655443 4455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|+|++++.++.....|+..+.... .++|+++|+||+|+.+.... ++.... ....+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKF-----AGQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHH-----HHHcCCeEEEEECCCCCCHH
Confidence 9999999999998888877775532 47999999999998764321 222111 11223468899999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~~~~ 171 (181)
T 3tw8_B 160 EMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 53
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=2e-30 Score=177.77 Aligned_cols=163 Identities=13% Similarity=0.296 Sum_probs=124.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
....++|+++|++|+|||||++++.+..+. ...++.+..+ ..+...+ +.+.+||+||++++...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 356789999999999999999999988765 3466666554 3344444 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++|||++++.++.....|+..+... ....++|+++|+||+|+.+.. ..++..+... ...+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 9999999998888887777665432 222578999999999987432 2333333221 0234468999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030192 165 GLYEGLDWLSNNIASK 180 (181)
Q Consensus 165 gv~~~~~~i~~~~~~~ 180 (181)
|++++|+++.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988754
No 54
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=7.2e-31 Score=178.64 Aligned_cols=159 Identities=22% Similarity=0.360 Sum_probs=124.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||++++.+..+. ...++.+.... .+... ...+.+||+||.+++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45689999999999999999999998865 34566665443 33333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+... .++.... .+..+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDY-----ADSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCcCHH
Confidence 999999999988887776665543 236799999999999976432 2222211 12234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 55
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=2.9e-30 Score=177.21 Aligned_cols=156 Identities=12% Similarity=0.161 Sum_probs=118.2
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+.+||+++|++|+|||||+++|.++.+..+.||.+..+. .+... .+.+.+|||||+++ ..+++++|++++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 35679999999999999999999999888777777765432 33333 46899999999876 457788999999
Q ss_pred EEECCCcccHHHHHHHHHHH--HcCCCCCCCeEEEEEeCCCCCC--C--CCHhHHHhhhCCCcccC-cceEEEEccccCC
Q 030192 91 VVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPN--A--MNAAEITDKLGLHSLRQ-RHWYIQSTCATSG 163 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~Dl~~--~--~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~ 163 (181)
|||+++++++.....|+..+ +......++|+++|+||+|+.+ . ...++..... +. .+++++++||++|
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX-----ADMKRCSYYETXATYG 153 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH-----HHHSSEEEEEEBTTTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH-----HhhcCCeEEEEecccc
Confidence 99999999999888864332 3333335799999999999842 1 1222322211 11 2468999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030192 164 EGLYEGLDWLSNNIAS 179 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~ 179 (181)
.|++++|+++.+.+.+
T Consensus 154 ~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVT 169 (178)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 56
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=179.30 Aligned_cols=160 Identities=19% Similarity=0.327 Sum_probs=126.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+.. ..++.+..+. .+.. ..+.+.+||+||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 456899999999999999999999988763 4566665543 2333 4578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++.... ++..+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMF-----AENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999988888888777766543 3579999999999997532 22222221 12234579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|+++.+.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (193)
T 2oil_A 177 LAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 57
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=180.28 Aligned_cols=164 Identities=19% Similarity=0.277 Sum_probs=128.7
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhcccccc
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (181)
+....+.++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+... .+.+.+||+||++++...+..+++.+|
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3445677999999999999999999999888654 355555443 333443 368999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++++|||+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCC
Confidence 999999999999999998888887765544689999999999997642 223332222 2234579999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030192 165 GLYEGLDWLSNNIAS 179 (181)
Q Consensus 165 gv~~~~~~i~~~~~~ 179 (181)
|++++|.++.+.+.+
T Consensus 163 gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 163 NVDKVFFDLMREIRA 177 (206)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998765
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=3e-30 Score=178.15 Aligned_cols=161 Identities=19% Similarity=0.292 Sum_probs=127.0
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
....++|+++|++|+|||||+++|.+..+.. ..++.+..+. .+... .+.+.+||+||++++...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 3567999999999999999999999888754 3455554432 23333 368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHH
Confidence 999999999998988888877765544579999999999987532 223333222 2234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 170 ~l~~~l~~~i~~ 181 (187)
T 2a9k_A 170 KVFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 59
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=182.05 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=120.7
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccc--eeEEEEEE--CCEEEEEEEcCCCCCccc-chhhcccccc
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRP-LWRHYFQNTQ 86 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~i~D~~g~~~~~~-~~~~~~~~~d 86 (181)
.....++|+++|++|||||||+++|.+.... ...++.+ .....+.. ..+.+.+||++|++++.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 3457799999999999999999999754332 2233333 22233333 346889999999988765 6778889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++++|||+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++.... ++..+++++++||++|.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL-----AGTLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHH-----HHHhCCEEEEEcCCCCC
Confidence 999999999999999999988877654433579999999999997543 22222221 11224578999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030192 165 GLYEGLDWLSNNIASK 180 (181)
Q Consensus 165 gv~~~~~~i~~~~~~~ 180 (181)
|++++|+++.+.+.++
T Consensus 174 ~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLR 189 (195)
T ss_dssp SHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999987653
No 60
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=9.8e-31 Score=177.67 Aligned_cols=159 Identities=18% Similarity=0.342 Sum_probs=124.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+... .+.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 467899999999999999999999887753 456655443 334433 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999988888888777665543 478999999999987532 222322211 2234579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++++++.+.+.++
T Consensus 156 ~l~~~l~~~~~~~ 168 (168)
T 1z2a_A 156 EVFKYLAEKHLQK 168 (168)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988754
No 61
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=7.3e-31 Score=182.37 Aligned_cols=160 Identities=21% Similarity=0.330 Sum_probs=123.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+.. ..++.+..+ ..+... .+.+.+||+||++++...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 467899999999999999999999888753 345555433 344444 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|+|+++++++.....|+..+.... ..++|+++|+||+|+.+... .++.... .+..+++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAF-----AREHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888777765532 25799999999999965322 2222221 12234579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|+++.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=8.8e-31 Score=177.53 Aligned_cols=159 Identities=16% Similarity=0.254 Sum_probs=124.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.++.+.. ..++.+... ..+... ...+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 45899999999999999999999887654 344544332 333343 45699999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++.... .+..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL-----AEEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHH-----HHHhCCCEEEecCCCCcCHHHH
Confidence 99999999999988888877655556899999999999865432 2222111 1122446899999999999999
Q ss_pred HHHHHHHhhh
Q 030192 170 LDWLSNNIAS 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
++++.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 63
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=5.3e-30 Score=179.95 Aligned_cols=160 Identities=20% Similarity=0.358 Sum_probs=126.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+.. ..++.+..+ ..+... .+.+.+|||||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 456899999999999999999999988763 456666444 344444 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999988888776665432 2579999999999997643 222222211 1234568999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|.++.+.+.++
T Consensus 160 ~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 160 DAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 64
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-30 Score=182.63 Aligned_cols=159 Identities=18% Similarity=0.353 Sum_probs=124.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+..+. .+.. ..+.+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 35689999999999999999999998875 34566665543 3333 3578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++.....|+..+.... ..++|+++|+||+|+.+... .++.... .+..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQL-----ADHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHH-----HHHCCCeEEEEECCCCCCHH
Confidence 9999999999988888776665432 35799999999999976432 2222211 11224479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 65
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=4.6e-31 Score=183.08 Aligned_cols=163 Identities=21% Similarity=0.341 Sum_probs=122.6
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEECC--EEEEEEEcCCCCCcc-cchhhccccc
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIR-PLWRHYFQNT 85 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~-~~~~~~~~~~ 85 (181)
...++.++|+++|++|+|||||+++|.+..+.. ..++.+..+ ..+...+ +.+.+||+||++++. ..+..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 444678999999999999999999999888763 456655443 3444443 789999999999888 7888899999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
|++++|||++++.++.....|+..+.......++|+++|+||+|+.+... .++... + .+..+++++++||++|
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-F----ADTHSMPLFETSAKNP 169 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCCEEECCSSSG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH-H----HHHcCCEEEEEeCCcC
Confidence 99999999999999988888888777655456899999999999965432 222211 1 1123446899999999
Q ss_pred ---CChHHHHHHHHHHhhh
Q 030192 164 ---EGLYEGLDWLSNNIAS 179 (181)
Q Consensus 164 ---~gv~~~~~~i~~~~~~ 179 (181)
.|++++|.++.+.+.+
T Consensus 170 ~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGGSCHHHHHHHHC-----
T ss_pred CcccCHHHHHHHHHHHHhh
Confidence 9999999999887754
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=5.5e-30 Score=180.55 Aligned_cols=162 Identities=22% Similarity=0.366 Sum_probs=123.1
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhcccccc
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (181)
......++|+++|++|+|||||+++|.+..+. ...++.+..+ ..+...+ +.+.+|||||++++...+..+++.+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 33456799999999999999999999988765 4456665443 4455555 78999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
++++|||++++.++.....|+..+..... .++|+++|+||+|+..... .++..... +..+++++++||++|.|
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 168 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIPFIESSAKNDDN 168 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCSSCCSCHHHHHHHH-----HHHTCCEEECBTTTTBS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 99999999999888888877766654322 4799999999999954322 22222111 11234689999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030192 166 LYEGLDWLSNNIAS 179 (181)
Q Consensus 166 v~~~~~~i~~~~~~ 179 (181)
++++|.++.+.+.+
T Consensus 169 i~~l~~~l~~~~~~ 182 (213)
T 3cph_A 169 VNEIFFTLAKLIQE 182 (213)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 67
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-31 Score=186.21 Aligned_cols=160 Identities=19% Similarity=0.358 Sum_probs=125.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+.. ..++.+.... .+. ...+.+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 467899999999999999999999887653 3455553332 333 36789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||+++++++.....|+..+... ...++|+++|+||+|+.+... .++.... .+..+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLL-----AEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHH-----HHHcCCeEEEEECCCCCCHH
Confidence 999999999998888877666553 235799999999999865422 2222111 12234579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|+++.+.+.++
T Consensus 175 ~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 175 QAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 68
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.1e-30 Score=178.41 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=121.9
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
...+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+ ..+... .+.+.+||+||++++...+..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34577999999999999999999999887764 356655444 233333 47899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcccCcce
Q 030192 89 IFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~ 153 (181)
++|||+++++++.... .|+..+... ..++|+++|+||+|+.+.. ..++..+ ..+..+.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~ 166 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK-----LAKEIGA 166 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH-----HHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH-----HHHHcCC
Confidence 9999999999998887 454444332 2479999999999997531 1111111 1111233
Q ss_pred -EEEEccccCCCChHHHHHHHHHHhhh
Q 030192 154 -YIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 154 -~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
+++++||++|.|++++|+++.+.+.+
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999988764
No 69
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=9.9e-31 Score=180.00 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=110.8
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
...+.++|+++|++|+|||||++++.+..+.. ..||.+..+. .+....+.+.+||+||++++...+..+++++|++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 34678999999999999999999999887653 3455443221 2344567788999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------------HhHHHhhhCCCcccCcce-EE
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRQRHW-YI 155 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~ 155 (181)
++|||++++.++......|...+.... .++|+++|+||+|+.+... .++... ..+..+. ++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~ 157 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-----LKKLIGAPAY 157 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-----HHHHHTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-----HHHHcCCCEE
Confidence 999999999999888743444433322 3799999999999865321 111111 1112232 78
Q ss_pred EEccccCCCChHHHHHHHHHHhhh
Q 030192 156 QSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 156 ~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
+++||++|.|++++|+++.+.+.+
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988764
No 70
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=5.6e-30 Score=179.77 Aligned_cols=162 Identities=17% Similarity=0.253 Sum_probs=124.4
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.+..++|+++|++|+|||||+++|.+..+. ...++.+..... +.. ..+.+.+||+||++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 356799999999999999999999988865 345666654433 333 347899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++|+|++++.++.....|+..+.... ...++|+++|+||+|+.+... .++...... ...+++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 99999999988888877776665432 124689999999999975432 223322211 0234578999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030192 165 GLYEGLDWLSNNIAS 179 (181)
Q Consensus 165 gv~~~~~~i~~~~~~ 179 (181)
|++++|+++.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 71
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=179.71 Aligned_cols=161 Identities=19% Similarity=0.321 Sum_probs=120.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+... ..+... .+.+.+||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 56789999999999999999999988775 3456665443 344444 368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++.....|+..+.. ....++|+++|+||+|+.+... .++....... ..+++++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCCCCCCHH
Confidence 99999999898888776555433 2235799999999999875432 2222221111 124579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|+++.+.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
No 72
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=2.9e-30 Score=177.05 Aligned_cols=159 Identities=18% Similarity=0.367 Sum_probs=124.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887653 456665443 3344443 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++.... ++..+++++++||++|.|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERK-----AKELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence 9999999988888888877665432 25799999999999875432 2222221 12234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++++++.+.+.+
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 73
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=2.2e-30 Score=178.94 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=120.2
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
....++|+++|++|+|||||+++|.+..+.. +.||.+..+. .+. ...+.+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 3567999999999999999999999988764 4566655442 222 24578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcccCcc-eE
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRH-WY 154 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~ 154 (181)
+|||+++++++......|...+.... .++|+++|+||+|+.+. ...++..+ ..+..+ .+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~ 157 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAAT 157 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH-----HHHHcCCcE
Confidence 99999999999888443333333221 47999999999998742 11111111 111122 47
Q ss_pred EEEcccc-CCCChHHHHHHHHHHhhhc
Q 030192 155 IQSTCAT-SGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 155 ~~~~S~~-~~~gv~~~~~~i~~~~~~~ 180 (181)
++++||+ ++.|++++|+.+.+.+.++
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 9999999 6899999999999988764
No 74
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=3.3e-30 Score=180.26 Aligned_cols=159 Identities=20% Similarity=0.368 Sum_probs=124.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEECC------------------------------
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN------------------------------ 60 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~~~------------------------------ 60 (181)
.+..++|+++|++|+|||||+++|.+..+.. ..++.+..+. .+...+
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3567999999999999999999999987763 4566654443 233222
Q ss_pred ---------EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 61 ---------ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 61 ---------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
..+.+||+||++++...+..+++.+|++++|+|++++.++.....|+..+... .++|+++|+||+|..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcc
Confidence 88999999999999999999999999999999999999998888887777654 249999999999943
Q ss_pred CC-CCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192 132 NA-MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 132 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
.. ...+++.+.. +..+++++++||++|.|++++|+++.+.+.++
T Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 161 KFQVDILEVQKYA-----QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp -CCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 22 2333333322 22345899999999999999999999987654
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=1.1e-29 Score=171.78 Aligned_cols=160 Identities=19% Similarity=0.291 Sum_probs=123.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+.. ..+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 35799999999999999999999887653 344544433 22333 346789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+.. +..+++++++|+++|.|+++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA-----RSYGIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEEECTTTCTTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHH
Confidence 99999999888888777765544335799999999999876332 22222211 1223468999999999999999
Q ss_pred HHHHHHhhhc
Q 030192 171 DWLSNNIASK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
+++.+.+.++
T Consensus 157 ~~l~~~~~~~ 166 (166)
T 2ce2_X 157 YTLVREIRQH 166 (166)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhC
Confidence 9999988653
No 76
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=180.96 Aligned_cols=159 Identities=21% Similarity=0.343 Sum_probs=118.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||+++|.+..+.. ..++.+..+ ..+...+ +.+.+||+||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 456899999999999999999999887753 455555433 3444444 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++.....|+..+..... .++|+++|+||+|+.+... ..+.... ++..+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRF-----AQENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 99999999999888888776654322 5799999999999865322 2222221 12334579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 77
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=5e-31 Score=182.75 Aligned_cols=161 Identities=15% Similarity=0.153 Sum_probs=119.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.+..+.. +.+|.+..+. .+.. ..+.+.+|||||++++... ..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 4577999999999999999999999988664 4566665542 2233 4578999999999988875 66889999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccc-cCCC
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCA-TSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~ 164 (181)
+|||+++++++.....|+..+..... ..++|+++|+||+|+.+.. ..++..+. ++..+++++++|| ++|.
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL-----AGRFGCLFFEVSACLDFE 171 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEECCSSSCSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHH-----HHHcCCcEEEEeecCccc
Confidence 99999999999998888777655321 1478999999999986532 22222211 1223457999999 8999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030192 165 GLYEGLDWLSNNIASK 180 (181)
Q Consensus 165 gv~~~~~~i~~~~~~~ 180 (181)
|++++|+.+.+.+.++
T Consensus 172 gv~~lf~~l~~~i~~~ 187 (187)
T 3c5c_A 172 HVQHVFHEAVREARRE 187 (187)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHhhC
Confidence 9999999999988653
No 78
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=2.3e-30 Score=183.17 Aligned_cols=160 Identities=21% Similarity=0.422 Sum_probs=124.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--C----------CEEEEEEEcCCCCCcccchh
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--K----------NISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~----------~~~~~i~D~~g~~~~~~~~~ 79 (181)
++.++|+++|++|+|||||+++|.+..+.. ..++.+..+. .+.. . .+.+.+|||||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 456899999999999999999999887753 3556554432 2322 2 57899999999999999999
Q ss_pred hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEE
Q 030192 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|||++++.++.....|+..+.......++|+++|+||+|+.+... .++..... +..++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 99999999999999999999988888777665544436799999999999975322 22222211 122346899
Q ss_pred ccccCCCChHHHHHHHHHHhhh
Q 030192 158 TCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
+||++|.|++++|+++.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988765
No 79
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=1.8e-30 Score=183.85 Aligned_cols=162 Identities=22% Similarity=0.313 Sum_probs=123.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEE----CC-EEEEEEEcCCCCCcccchhhccccccE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KN-ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~----~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
....++|+++|++|+|||||+++|.+..+.. ..++.+........ .. +.+.+|||||++++...+..+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 3567999999999999999999999887653 35666655544332 12 789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
+++|+|++++.++.....|+..+..... .++|+++|+||+|+.+... ..+....+ .+..+++++++||++|.|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVMEV----LKGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CCHHHHHHH----TTTCCCEEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHH----HHHcCCcEEEEecCCCCCH
Confidence 9999999999998888877666544322 4689999999999976422 12222222 2234568999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030192 167 YEGLDWLSNNIASK 180 (181)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (181)
+++|.++.+.+.++
T Consensus 163 ~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 163 GLPFLHLARIFTGR 176 (218)
T ss_dssp THHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988653
No 80
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.5e-30 Score=181.43 Aligned_cols=160 Identities=21% Similarity=0.358 Sum_probs=120.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+..+ ..+...+ +.+.+|||||++++...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 56689999999999999999999998876 3456655443 3455554 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.++.....|+..+.... ..++|+++|+||+|+.+... .++.... ++..+++++++||++|.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTF-----AQENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888777665432 25799999999999875322 2222221 12234579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|+++.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=4.3e-30 Score=180.39 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=118.8
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
...+.++|+++|++|+|||||++++.++.+.. ..++.+..+. . +....+.+.+|||||++++...+..+++++|++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 34678999999999999999999999887763 3555543332 2 233556788999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cccCcc-eEEEEc
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRQRH-WYIQST 158 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~ 158 (181)
++|||++++.++......|...+.... .++|+++|+||+|+.+.....+........ ..+..+ .+++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 999999999999888744444444322 579999999999987643222111111110 111122 369999
Q ss_pred cccCCCChHHHHHHHHHHh
Q 030192 159 CATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 159 S~~~~~gv~~~~~~i~~~~ 177 (181)
||++|.|++++|+++.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998865
No 82
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.5e-30 Score=175.44 Aligned_cols=160 Identities=16% Similarity=0.234 Sum_probs=121.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE-EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.+..+. ...++.+..+.. +.. ..+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999988765 345555544432 222 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
+|++++.++.....|+..+.... ...++|+++|+||+|+.+.... .+... ..+..+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-----LARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-----HHHHhCCeEEEecCCCCcCHHH
Confidence 99999988888887776654421 2247899999999998754322 12111 1122345799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030192 169 GLDWLSNNIASK 180 (181)
Q Consensus 169 ~~~~i~~~~~~~ 180 (181)
+++++.+.+.++
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999887654
No 83
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-29 Score=177.17 Aligned_cols=168 Identities=17% Similarity=0.246 Sum_probs=120.6
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccE
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
......++|+++|++|+|||||+++|.+..+.. ..|+.+..+ ..+... .+.+.+|||||++++...+..+++++|+
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 334567899999999999999999999988764 345555444 223443 4689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cccCcce-EEEE
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRQRHW-YIQS 157 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~ 157 (181)
+++|||+++++++......|...+.... .++|+++|+||+|+.+.....+....+... ..+..+. ++++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence 9999999999999888554444444322 479999999999987542211111111100 1111233 7899
Q ss_pred ccccCCCChHHHHHHHHHHhhhc
Q 030192 158 TCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
+||++|.|++++|+++.+.+.++
T Consensus 179 ~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 179 CSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHSC
T ss_pred eeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 84
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=2.5e-30 Score=183.60 Aligned_cols=161 Identities=21% Similarity=0.357 Sum_probs=128.0
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccccE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
.....++|+++|++|+|||||+++++.+.+. ...++.+.+...... ..+.+.+|||||++++...+..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 4467799999999999999999997766654 345666655543322 45789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+++|||++++.++.....|+..+.... .++|+++|+||+|+.+.....+ .....+..+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999988888877776642 4789999999999976432221 122233445689999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|.++.+.+.++
T Consensus 164 ~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 164 KPFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987653
No 85
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=176.50 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=115.2
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEECC--EEEEEEEcCCCCCcccchhhccccccEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.....++|+++|++|+|||||++++.+..+.. ..+|.+..+. .+...+ +.+.+||+||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 44678999999999999999999999888653 3566654442 344444 6788999999999999999999999999
Q ss_pred EEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcccCcce
Q 030192 89 IFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~ 153 (181)
++|||+++++++.... .|+..+... . .++|+++|+||+|+.+.. ..++... ..+..+.
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~ 168 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCH-C-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-----LAEEIKA 168 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-C-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-----HHHhcCC
Confidence 9999999999998887 455444332 1 479999999999986421 1111111 1111233
Q ss_pred -EEEEccccCCCChHHHHHHHHHHhhh
Q 030192 154 -YIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 154 -~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
+++++||++|.|++++|+++.+.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999988764
No 86
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=9.4e-30 Score=174.92 Aligned_cols=163 Identities=15% Similarity=0.251 Sum_probs=113.0
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEE---CCEEEEEEEcCCCCCcccchhhccccccE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+..++|+++|++|+|||||++++.+..+. ...++.+... ..+.. ....+.+||+||++++...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 356799999999999999999999988765 3455555333 33333 35789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEcccc
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+++|+|++++.++.....|+..+.... ...++|+++|+||+|+.+.. ..++...... ...+.+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 999999999999888888777665432 23578999999999985431 2222222211 0234568999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030192 162 SGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~~~~~ 180 (181)
+|.|++++|+++.+.+.++
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999987653
No 87
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=3.6e-30 Score=181.56 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=119.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
....++|+++|++|+|||||+++|.++.+.. +.||.+..+. .+.. ..+.+.+|||||++++...+..+++++|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3567999999999999999999999888753 4566664442 2333 4479999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----------CHhHHHhhhCCCcccCcc-eEEEEc
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----------NAAEITDKLGLHSLRQRH-WYIQST 158 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (181)
+|||+++++++......|...+.... .++|+++|+||+|+.+.. ..++.... .+..+ .+++++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~ 159 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL-----RKQIGAAAYIEC 159 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH-----HHHHTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH-----HHHcCCceEEEc
Confidence 99999999999888743333333222 479999999999986532 11111111 11122 278999
Q ss_pred cccCCCChHHHHHHHHHHhhh
Q 030192 159 CATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 159 S~~~~~gv~~~~~~i~~~~~~ 179 (181)
||++|.|++++|+++.+.+.+
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998765
No 88
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-29 Score=179.11 Aligned_cols=160 Identities=15% Similarity=0.162 Sum_probs=117.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC--cccccCccceeE--EEEEEC--CEEEEEEEcCCCCC-cccchhhccccccE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~-~~~~~~~~~~~~d~ 87 (181)
...+||+++|++|+|||||+++|.+.. +....++++.+. ..+... .+.+.+|||+|.++ +......+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456899999999999999999998643 334334444332 334443 45778999999876 45566777889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
+++|||+++++++.....|+..+.......++|+++|+||+|+.+... .++... .+...++++++|||++|.|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-----~a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-----CAVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-----HHHHcCCEEEEEeCCCCCC
Confidence 999999999999999988887765543335799999999999975322 221111 1122345799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030192 166 LYEGLDWLSNNIAS 179 (181)
Q Consensus 166 v~~~~~~i~~~~~~ 179 (181)
++++|+++.+.+..
T Consensus 190 v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 190 VKELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 89
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=2.4e-29 Score=176.12 Aligned_cols=165 Identities=17% Similarity=0.245 Sum_probs=122.3
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+...++|+++|++|+|||||++++.+..+.. +.|+.+..+ ..+... .+.+.+||+||++++...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 3567899999999999999999999888763 355555443 233443 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEcc
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTC 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S 159 (181)
+|||+++++++......|...+.... .++|+++|+||+|+.+.....+...... ...++..+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999888555555444322 4799999999999876421111111000 011112233 789999
Q ss_pred ccCCCChHHHHHHHHHHhhh
Q 030192 160 ATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~~~~ 179 (181)
|++|.|++++|+++.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988753
No 90
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=2.4e-29 Score=174.40 Aligned_cols=163 Identities=18% Similarity=0.289 Sum_probs=113.4
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccE
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
....+.++|+++|++|+|||||+++|.+..+... .++.+..+ ..+... .+.+.+||+||++++...+..+++.+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 3445678999999999999999999998876533 44444333 233333 4679999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
+++|||++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..+.. +..+++++++||++|.|+
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence 99999999998988888777666554333579999999999987632 222222211 122346899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030192 167 YEGLDWLSNNIAS 179 (181)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (181)
+++++++.+.+.+
T Consensus 171 ~~l~~~l~~~~~~ 183 (190)
T 3con_A 171 EDAFYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 91
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=1.5e-29 Score=174.51 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=120.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ..+.+.+||+||++++...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 457899999999999999999999887653 3555554332 2333 34678899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEccc
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S~ 160 (181)
|||++++.++......|...+.... .++|+++|+||+|+.+.....+...... ....+..+. +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 9999999999888743433333222 3799999999999865321111111000 001112233 7999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030192 161 TSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~~ 180 (181)
++|.|++++|+++.+.+.+.
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCccCHHHHHHHHHHHHhcc
Confidence 99999999999999988653
No 92
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-29 Score=177.49 Aligned_cols=159 Identities=15% Similarity=0.182 Sum_probs=120.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
+..++|+++|++|+|||||+++|.+..+.. +.||.+..+. .+. ...+.+.+|||||++++...+..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 567999999999999999999999988764 3566665442 232 245789999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcccCcc-eE
Q 030192 91 VVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRH-WY 154 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~ 154 (181)
|||+++++++.... .|+..+... ..+.|+++|+||+|+.+. ...++... ..+..+ .+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~ 178 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAAT 178 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCSE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH-----HHHHcCCCE
Confidence 99999999998884 454444332 147999999999998642 11111111 111122 47
Q ss_pred EEEcccc-CCCChHHHHHHHHHHhhhc
Q 030192 155 IQSTCAT-SGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 155 ~~~~S~~-~~~gv~~~~~~i~~~~~~~ 180 (181)
++++||+ ++.|++++|+.+.+.+.++
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 9999999 6899999999999988764
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.3e-29 Score=176.83 Aligned_cols=161 Identities=15% Similarity=0.210 Sum_probs=123.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+.. ..++.+..+.. +.. ..+.+.+|||||++++...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 567999999999999999999999887653 45565544432 222 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|||++++.++.....|+..+.... ...++|+++|+||+|+.+... .++.... .+..+++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV-----AQEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHH-----HHHHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHH-----HHHhCCeEEEEecCCCCCHHH
Confidence 999999988888877765544321 124689999999999976332 2222211 122345799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030192 169 GLDWLSNNIASK 180 (181)
Q Consensus 169 ~~~~i~~~~~~~ 180 (181)
+|+++.+.+.++
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
No 94
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=178.41 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=103.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++|+|||||+++|.+..+.. ..++.+..+ ..+.. ..+.+.+|||||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 467999999999999999999999887753 345554433 22333 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEccc
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S~ 160 (181)
|||++++.++......|...+.... .++|+++|+||+|+.+.....+...... ....+..+. +++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 9999999999888744444333222 4789999999999976422111111000 011112233 7999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030192 161 TSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~~ 180 (181)
++|.|++++|+++.+.+.+.
T Consensus 191 ~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999987653
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=6.5e-30 Score=178.33 Aligned_cols=164 Identities=20% Similarity=0.277 Sum_probs=114.0
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccC----ccceeEEEEE-ECCEEEEEEEcCCCCCcccch---hhcc
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVE-YKNISFTVWDVGGQDKIRPLW---RHYF 82 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~ 82 (181)
..+.++.+||+++|++|||||||++++.+........ +.......+. ...+.+.+||+||++++.... ..++
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 3455788999999999999999999888754332211 1112122222 456899999999999987776 7899
Q ss_pred ccccEEEEEEECCCc--ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhh----hCCCcccCcc
Q 030192 83 QNTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDK----LGLHSLRQRH 152 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~----~~~~~~~~~~ 152 (181)
+++|++++|||++++ +++.....|+...... ..++|+++|+||+|+.+... ..++... +........+
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 999999999999987 5566666666655321 25799999999999876321 1122111 1111222567
Q ss_pred eEEEEccccCCCChHHHHHHHHHHh
Q 030192 153 WYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 153 ~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
++++++||++ .|++++|..+++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8899999999 99999999999876
No 96
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=4e-30 Score=180.45 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=93.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC--Ccc-cccCcccee--EEEEEEC----CEEEEEEEcCCCCCcccchhhccccc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFN--VETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-~~~~~~~~~--~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (181)
...++|+++|++|+|||||+++|.+. .+. ...+|.+.. ...+... .+.+.+||+||++++...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56789999999999999999999988 555 345666533 3345444 57999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCC-CC--CHhHHHhhhCCCcccCcceEEEEccc
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPN-AM--NAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
|++++|||++++.++.....|+..+..... ..++|+++|+||+|+.+ .. ..++..... +..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence 999999999999999988888777765432 24799999999999976 22 223322221 123457999999
Q ss_pred cC-CCChHHHHHHHHHHhhh
Q 030192 161 TS-GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 161 ~~-~~gv~~~~~~i~~~~~~ 179 (181)
++ |.|++++|+++.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987764
No 97
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=4.4e-30 Score=179.55 Aligned_cols=157 Identities=24% Similarity=0.431 Sum_probs=117.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccc--eeEEEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+.. ..++.+ .....+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 456899999999999999999999887653 344444 3344455544 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+|||++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..+++...+ +++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 9999999999999988777765543 3579999999999986542 223333333 3458899999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030192 165 GLYEGLDWLSNNIASK 180 (181)
Q Consensus 165 gv~~~~~~i~~~~~~~ 180 (181)
|++++|+++.+.+.++
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988765
No 98
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=8.7e-29 Score=172.21 Aligned_cols=160 Identities=15% Similarity=0.153 Sum_probs=113.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC--cccccCccceeE--EEEEEC--CEEEEEEEcCCCCC-cccchhhccccccE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~-~~~~~~~~~~~~d~ 87 (181)
...++|+++|++|+|||||+++|.+.. +.+..++++.+. ..+..+ .+.+.+|||+|.+. +......+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456899999999999999999998633 333333444332 334443 45778999999876 45566778888999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
+++|||+++++++.....|+..+.......++|+++|+||+|+.+... .++... .....++++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~-----~a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA-----XAVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH-----HHHHhCCceEEeccccCCC
Confidence 999999999999999888877665433335799999999999864322 221111 1112344789999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030192 166 LYEGLDWLSNNIAS 179 (181)
Q Consensus 166 v~~~~~~i~~~~~~ 179 (181)
++++|+++.+.+..
T Consensus 159 v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 159 VKELFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987743
No 99
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=1.6e-27 Score=163.37 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=119.4
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcccc-cC--ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.++.++|+++|++|+|||||++++.+..+... .+ +.......+...+..+.+|||||++++...+..++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 46789999999999999999999998876532 33 3334445567788899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC--CcccCcc--eEEEEccccCCCCh
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--HSLRQRH--WYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~S~~~~~gv 166 (181)
|+|++++...... ..+..... .++|+++|+||+|+.+. ..+++...+.. ...+..+ .+++++||++|.|+
T Consensus 85 v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 9999875433222 23333322 47899999999999764 23333333321 1122233 78999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030192 167 YEGLDWLSNNIAS 179 (181)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (181)
+++|+++.+.+..
T Consensus 159 ~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 159 DHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 9999999987654
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.9e-29 Score=174.32 Aligned_cols=161 Identities=18% Similarity=0.279 Sum_probs=114.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcC--Ccc-cccCccceeEEEEE-------ECCEEEEEEEcCCCCCcccchhhcccccc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVETVE-------YKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~--~~~-~~~~~~~~~~~~~~-------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (181)
.++|+++|++|||||||++++.+. .+. .+.+|.+..+.... ...+.+.+|||+|++++...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 333 34677776654432 24678999999999999988899999999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce----EEEEcccc
Q 030192 87 GLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW----YIQSTCAT 161 (181)
Q Consensus 87 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~S~~ 161 (181)
++++|||++++ .++.....|+..+.... .++|+++|+||+|+.+.....+..........+..++ .++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 46877878877665432 4789999999999875432211111111111222233 48999999
Q ss_pred CCC-ChHHHHHHHHHHhhh
Q 030192 162 SGE-GLYEGLDWLSNNIAS 179 (181)
Q Consensus 162 ~~~-gv~~~~~~i~~~~~~ 179 (181)
+|. |++++++.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999999887754
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=8.5e-31 Score=183.81 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=123.1
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
+..++.++|+++|++|+|||||+++|.++.+.. ..++.+..+. .+....+.+.+|||||++++...+..+++++|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 444688999999999999999999999877653 3444443221 234456788899999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---------HHHhhhCCCcccCcce-EEEE
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---------EITDKLGLHSLRQRHW-YIQS 157 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~ 157 (181)
+++|||++++.++......|...+.... .++|+++|+||+|+.+..... .+........++..+. ++++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 9999999999999888744444444322 379999999999997532111 1111222233344455 7899
Q ss_pred ccccCCCChHHHHHHHHHHh
Q 030192 158 TCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~~ 177 (181)
+||++|.|++++|+++.+.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998765
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=9.6e-28 Score=171.09 Aligned_cols=169 Identities=14% Similarity=0.121 Sum_probs=112.9
Q ss_pred HHhhhc--ccccEEEEEcCCCCChHHHHhhHhcCCccc-cc--CccceeEEEEEECCEEEEEEEcCCCC------Cc---
Q 030192 9 FSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TI--PTIGFNVETVEYKNISFTVWDVGGQD------KI--- 74 (181)
Q Consensus 9 ~~~~~~--~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~i~D~~g~~------~~--- 74 (181)
..+++. .+.++|+++|++|+|||||+++|.+..+.. .. .+.......+......+.+|||||.. +.
T Consensus 19 ~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 98 (228)
T 2qu8_A 19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIE 98 (228)
T ss_dssp ---CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHH
T ss_pred eccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHH
Confidence 345554 578999999999999999999999987652 22 24444455566678999999999983 21
Q ss_pred ccchhhccccccEEEEEEECCCcccHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcc
Q 030192 75 RPLWRHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
...+..++..+|++++|+|++++.++. ....++..+... ..++|+++|+||+|+.+...................+
T Consensus 99 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
T 2qu8_A 99 MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK 176 (228)
T ss_dssp HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC
Confidence 111234467889999999999887764 233444444332 2379999999999997643322111111111112223
Q ss_pred --eEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 153 --WYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 153 --~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
++++++||++|.|++++|+++.+.+.+
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 177 NPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988764
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=8.5e-29 Score=182.92 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=116.9
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCccc----ccCccceeEEEEEECCEEEEEEEcCCCCCccc---chhhccccccEEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---LWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~~i~v 91 (181)
||+++|+.|+|||||++++.++.+.. ..||.+..+..+ ...+++++|||+|+++|.. .+..++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999987665432 467888877666 3568999999999999975 358899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccc----CcceEEEEcccc
Q 030192 92 VDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLR----QRHWYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~S~~ 161 (181)
||++++ +.+...||..++.. ...+++|+++++||+|+.+... .+++.+......++ +.++.+++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44445555443321 1125799999999999976422 12333333333333 367899999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030192 162 SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~~~~ 179 (181)
+ .+|.++|..+++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999987654
No 104
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=4.8e-28 Score=168.38 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=109.0
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCcccee--EEEEEECCEEEEEEEcCC----------CCCccc
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNISFTVWDVGG----------QDKIRP 76 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~D~~g----------~~~~~~ 76 (181)
++.+..+.++|+++|++|+|||||++++.+..+. ...++.+.+ ...... +..+.+||||| ++.+..
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHH
Confidence 3455567899999999999999999999988743 333333322 122222 23699999999 556666
Q ss_pred chhhccccc---cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCCccc
Q 030192 77 LWRHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLHSLR 149 (181)
Q Consensus 77 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~~~~~~~~ 149 (181)
.+..+++.+ |++++|+|++++.+..... +...+.. .+.|+++|+||+|+.+...... +.+.+. .
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~ 165 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----I 165 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----C
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----c
Confidence 677777666 9999999999877765432 2222222 4789999999999987544332 332232 2
Q ss_pred CcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
..+.+++++||++|.|++++++++.+.+.
T Consensus 166 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 166 DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 34568999999999999999999998765
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=7.3e-27 Score=158.66 Aligned_cols=148 Identities=22% Similarity=0.278 Sum_probs=107.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCc--cceeEEEEEECCEEEEEEEcCCCCCcc------cchhhccc--c
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N 84 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--~ 84 (181)
+.++|+++|++|+|||||++++.+..+. ...|+ .......+...+..+.+|||||+.++. .....+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3579999999999999999999987653 33343 333345566678999999999998775 23355554 7
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEccc
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+|++++|+|+++.+ ....|+..... .++|+++|+||+|+.... ..+++.+.++ ++++++||
T Consensus 82 ~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEc
Confidence 99999999998643 33445555443 378999999999985421 2344444443 35889999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030192 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~ 178 (181)
++|.|++++|+++.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
No 106
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=4.4e-27 Score=160.85 Aligned_cols=152 Identities=19% Similarity=0.239 Sum_probs=109.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhccc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQ 83 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 83 (181)
...+|+++|++|+|||||++++.+..+. ...+ +.......+...+..+.+|||||..++... ...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 4679999999999999999999987642 2222 333444566777888999999998654321 123568
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
.+|++++|+|++++.++. ...|+..+.... ..++|+++|+||+|+.+.. ....+..+.+++++||++|
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGET----------LGMSEVNGHALIRLSARTG 150 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTTC
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcch----------hhhhhccCCceEEEeCCCC
Confidence 899999999999887765 335554443322 2479999999999985421 1122234568999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030192 164 EGLYEGLDWLSNNIAS 179 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~ 179 (181)
.|++++|+++.+.+..
T Consensus 151 ~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999887643
No 107
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=9.1e-28 Score=166.76 Aligned_cols=164 Identities=19% Similarity=0.218 Sum_probs=110.9
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE-EEEECCEEEEEEEcCC----------CCCcccchh
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG----------QDKIRPLWR 79 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g----------~~~~~~~~~ 79 (181)
+.+....++|+++|++|+|||||++++.+.......++.+.+.. .....+..+.+||||| ++.+...+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 34556778999999999999999999999875544444443321 1222345688999999 445666666
Q ss_pred hccccc---cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccC-cceEE
Q 030192 80 HYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYI 155 (181)
Q Consensus 80 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 155 (181)
.+++.+ |++++|+|+++..+.... .+...+.. .++|+++|+||+|+.+....+...+... ..+.. ..+++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~ 170 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHR-KVFSKYGEYTI 170 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHH-HHHHSSCCSCE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHH-HHHhhcCCCce
Confidence 666655 999999999875443222 12222222 2689999999999976543333322221 11111 33579
Q ss_pred EEccccCCCChHHHHHHHHHHhhhc
Q 030192 156 QSTCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 156 ~~~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
+++||++|.|++++|+++.+.+.++
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~~ 195 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKEN 195 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC--
T ss_pred EEEecCCCCCHHHHHHHHHHHhhcC
Confidence 9999999999999999999988653
No 108
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=8.9e-27 Score=157.08 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCc-------ccchhhcccccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d 86 (181)
.+|+++|++|+|||||++++.+..+. ...+ +.......+...+..+.+||+||...+ ...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999988743 2222 333445566678889999999998773 344566788999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEccccCCCC
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSGEG 165 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~g 165 (181)
++++|+|++++.+.. ..++...+.. .++|+++|+||+|+.+.. ++..+ .. ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~-----~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGP-----LY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGG-----GG-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--HhHHH-----HH-hCCCCCeEEEecccCCC
Confidence 999999998764432 2334444433 468999999999987541 11111 11 2233 588999999999
Q ss_pred hHHHHHHHHHHh
Q 030192 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~i~~~~ 177 (181)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998875
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=1.1e-26 Score=173.74 Aligned_cols=165 Identities=17% Similarity=0.198 Sum_probs=120.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||++++.++.+.. ..+|.+..+. .+... .+.+.+||+||++++...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 567999999999999999999999887753 4555554432 23333 4567799999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CcccCcce-EEEEccc
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~S~ 160 (181)
|||++++.++......|...+.... .++|+++|+||+|+.+.....+....... ...+..+. +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999999888744444433322 37999999999998653111111111000 01112233 7999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030192 161 TSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~~ 180 (181)
++|.|++++|+.+.+.+...
T Consensus 312 ~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999988754
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=6.2e-28 Score=167.04 Aligned_cols=160 Identities=17% Similarity=0.228 Sum_probs=112.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEECCEEEEEEEcCC-----------CCCcccchhhcccc-
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYFQN- 84 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~~~- 84 (181)
++|+++|++|+|||||++++.+..+.. ..|+.......+... .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999987653 345444444444444 689999999 45566667777776
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHH---------HHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcce
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHR---------MLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~---------~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 153 (181)
++++++|+++.+..++......|.. ........++|+++|+||+|+.+.. ..+++.+.++..+ .....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 7777777777667777666333322 1111112479999999999997643 3445555555531 22234
Q ss_pred EEEEccccCCCChHHHHHHHHHHhhhc
Q 030192 154 YIQSTCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 154 ~~~~~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
+++++||++|.|++++|+++.+.+.++
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 688999999999999999999987654
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=6.4e-27 Score=173.67 Aligned_cols=162 Identities=21% Similarity=0.232 Sum_probs=119.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC--cc--cccCccceeEEEEEE-CCEEEEEEEcCCCCCc-----ccchhhccccc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~--~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~-----~~~~~~~~~~~ 85 (181)
..+||+++|++|+|||||++++.++. +. ...+|.+..+..+.. +++.+.+||+||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 35899999999999999999998873 32 346788888777765 6789999999999988 67888889999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCcccCc---ceEEEEc
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAE---ITDKLGLHSLRQR---HWYIQST 158 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~ 158 (181)
|++++|||+++++++..+..|...+... ....++|+++|+||+|+.+.....+ ..........+.. .++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999998886653322110 0125799999999999876211110 1111111112222 2689999
Q ss_pred cccCCCChHHHHHHHHHHhh
Q 030192 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 S~~~~~gv~~~~~~i~~~~~ 178 (181)
||++ .|+.++|..+++.+.
T Consensus 162 Sa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTC
T ss_pred eecC-ChHHHHHHHHHHHHc
Confidence 9999 899999999887654
No 112
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=172.94 Aligned_cols=162 Identities=12% Similarity=0.113 Sum_probs=114.1
Q ss_pred hcccccEEEEEcCC---------CCChHHHHhhHhc---CCcc-cccCcc-ceeE------------------EEEEECC
Q 030192 13 FAKKEMRILMVGLD---------AAGKTTILYKLKL---GEIV-TTIPTI-GFNV------------------ETVEYKN 60 (181)
Q Consensus 13 ~~~~~~~i~i~G~~---------~~GKSsli~~l~~---~~~~-~~~~~~-~~~~------------------~~~~~~~ 60 (181)
.....+||+++|.+ |||||||+++|.+ ..+. .+.|++ +..+ ..++...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34577999999999 9999999999998 3443 233432 2111 0134566
Q ss_pred EEEEEEE-----------------------cCCCCCcccchhhccc---------------------cccEEEEEEECCC
Q 030192 61 ISFTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTQGLIFVVDSND 96 (181)
Q Consensus 61 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 96 (181)
+.+.+|| ++|++++...+..+++ ++|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 7778888888888877 7999999999999
Q ss_pred c--ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192 97 R--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 97 ~--~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
+ +++..+..|+..+.......++|+++|+||+|+.+....++....... ..+++++++||++|.|++++|+++.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCCCCHHHHHHHHH
Confidence 8 899999888877655322247999999999998654222222221111 1245789999999999999999999
Q ss_pred HHhh
Q 030192 175 NNIA 178 (181)
Q Consensus 175 ~~~~ 178 (181)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1e-25 Score=155.75 Aligned_cols=151 Identities=22% Similarity=0.275 Sum_probs=113.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccc--eeEEEEEECCEEEEEEEcCCCCCcc------cchhhccc--
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ-- 83 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 83 (181)
.+.++|+++|++|+|||||+++|.+..+. ...|+.+ .....+...+..+.+|||||+.++. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 46789999999999999999999987643 3344333 3445567788999999999998775 33555554
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEcc
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+|++++|+|.++ +.....|+..... .++|+++|+||+|+.+. ...+++.+.++ ++++++|
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~S 149 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLS 149 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECB
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEE
Confidence 4999999999864 4555556655544 47899999999998543 23444544444 3588999
Q ss_pred ccCCCChHHHHHHHHHHhhhc
Q 030192 160 ATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~~~~~ 180 (181)
|+++.|++++|+++.+.+.++
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999887653
No 114
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=8.1e-27 Score=165.50 Aligned_cols=164 Identities=16% Similarity=0.120 Sum_probs=110.5
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCc-c--cccC--ccceeEEEEE-ECCEEEEEEEcCCCCC----------c
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-V--TTIP--TIGFNVETVE-YKNISFTVWDVGGQDK----------I 74 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~--~~~~--~~~~~~~~~~-~~~~~~~i~D~~g~~~----------~ 74 (181)
+.+....++|+++|.+|+|||||+++|.+... . ...+ |.......+. ..+..+.+|||||... +
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 45556789999999999999999999998862 2 2222 3333333333 3467899999999532 3
Q ss_pred ccchhhcccc---ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc---
Q 030192 75 RPLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL--- 148 (181)
Q Consensus 75 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--- 148 (181)
......+++. +|++++|+|+++..+ .....+...+.. .++|+++|+||+|+.+.....+....+.....
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 4444555555 888999999987544 233333444443 47899999999999764332222211111000
Q ss_pred ---cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 149 ---RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 149 ---~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
.....+++++||++|.|++++++++.+.+.+
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 1246689999999999999999999988764
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=3e-25 Score=160.83 Aligned_cols=149 Identities=19% Similarity=0.259 Sum_probs=112.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc------hhhcc--c
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--Q 83 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~ 83 (181)
.+.++|+++|++|+|||||+|+|.+..+. ...| |.......+...+..+.+|||||...+... ...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45689999999999999999999987764 3344 333444556677899999999999877643 24454 5
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEcc
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+|++++|+|+++.++. ..++..+.. .++|+++++||+|+.+.. ..+++.+.++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 89999999999886543 334444444 479999999999985421 3445555554 3689999
Q ss_pred ccCCCChHHHHHHHHHHhh
Q 030192 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~~~ 178 (181)
|++|.|++++++.+.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999988764
No 116
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.93 E-value=6.1e-26 Score=158.53 Aligned_cols=158 Identities=18% Similarity=0.328 Sum_probs=119.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|||||||++++.+..+. .+.|+.+... ..+...+ +.+.+||++|++++...+..+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 4689999999999999999999998765 3456655443 3444444 678899999999999888889999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|+|+++..++.....|+..+... ...+.|+++++||+|+.+.. ..++.... +...++.++++|++++.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l-----~~~~~~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF-----AEKNNLSFIETSALDSTNVEE 157 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCeEEEEeCCCCCCHHH
Confidence 99999888887777776554332 22468999999999996532 22222211 123345788999999999999
Q ss_pred HHHHHHHHhhh
Q 030192 169 GLDWLSNNIAS 179 (181)
Q Consensus 169 ~~~~i~~~~~~ 179 (181)
+++.+.+.+.+
T Consensus 158 l~~~l~~~~~~ 168 (199)
T 2f9l_A 158 AFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=5.1e-25 Score=163.46 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=116.7
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccccc--C--ccceeEEEEEEC-CEEEEEEEcCCCCCcc----------cc
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYK-NISFTVWDVGGQDKIR----------PL 77 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~--~~~~~~~~~~~~-~~~~~i~D~~g~~~~~----------~~ 77 (181)
++...-.|+++|.+|+|||||+|+|.+..+.... + |........... +..+.+|||||..+.. ..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 3455678999999999999999999998865322 2 333334445666 8999999999986654 45
Q ss_pred hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEE
Q 030192 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
...+++.+|++++|+|+++..+......|+..+.. .++|+++|+||+|+. +.....+....+.... ....+++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~ 159 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIV 159 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEE
Confidence 66778899999999999988887766554544433 478999999999997 4433333222221110 0123689
Q ss_pred EccccCCCChHHHHHHHHHHhhh
Q 030192 157 STCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 157 ~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
++||++|.|++++++.+.+.+.+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEeCCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999988754
No 118
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=6.1e-25 Score=162.40 Aligned_cols=155 Identities=17% Similarity=0.093 Sum_probs=112.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc--ccC--ccceeEEEEEECCEEEEEEEcCCCCC--------cccchhhccc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (181)
+..+|+++|++|+|||||+|+|++..+.. ..| |.......+...+..+.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45679999999999999999999987642 222 22222233556789999999999876 3445667789
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccC
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.+|++++|+|++++.+.. ..++...+.... .+.|+++|+||+|+.+... ..+..+.+ . ...+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~-----~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL-L-----PEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT-S-----TTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh-c-----CcCcEEEEeCCC
Confidence 999999999998765543 455555554422 3799999999999876433 22333333 1 123688999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030192 163 GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~~ 179 (181)
|.|++++++.+...+.+
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999876643
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=4.4e-25 Score=159.73 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccCc--cceeEEEEEECCEEEEEEEcCCCCCccc----------chhhcc--
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHYF-- 82 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~-- 82 (181)
.+|+++|.+|+|||||+|+|.+.... ...|+ .......+...+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 48999999999999999999988754 33443 3344556777888999999999877654 345566
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEc
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++|++++|+|+++.++... +.. .+.. .++|+++|+||+|+.+.. ..+.+.+.++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~---l~~-~l~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLY---LTS-QLFE---LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHH---HHH-HHTT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHH---HHH-HHHH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 78999999999987543332 222 2332 479999999999986432 3344555554 368999
Q ss_pred cccCCCChHHHHHHHHHH
Q 030192 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~gv~~~~~~i~~~ 176 (181)
||++|.|++++++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999865
No 120
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=2e-25 Score=172.84 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=117.6
Q ss_pred hhHHHHHHhhhc-------ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCC
Q 030192 3 LTFTKLFSRLFA-------KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 3 ~~~~~~~~~~~~-------~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~ 71 (181)
.++..+...++. ...++|+++|++|+|||||+|++.+.... +..+ |.......+...+..+.+|||||+
T Consensus 154 ~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 154 DLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 233 (436)
T ss_dssp HHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHH
T ss_pred HHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCc
Confidence 345555554442 25689999999999999999999988753 3333 223333456778889999999997
Q ss_pred C----------Ccccch-hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhH
Q 030192 72 D----------KIRPLW-RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAE 138 (181)
Q Consensus 72 ~----------~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~ 138 (181)
. .|.... ..+++.+|++++|+|++++.+.+.. .++..... .++|+++|+||+|+.+... .++
T Consensus 234 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~ 308 (436)
T 2hjg_A 234 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKE 308 (436)
T ss_dssp TCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHH
T ss_pred CcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHH
Confidence 3 333222 2467889999999999998887664 34443333 5799999999999976543 223
Q ss_pred HHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
+.+.+........+.+++++||++|.|++++|+.+.+.+.+
T Consensus 309 ~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 309 FEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp HHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 33322222222234579999999999999999999887654
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=2.5e-25 Score=162.64 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=108.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCc--cceeEEEEEECCEEEEEEEcCCCCCcccc----------hhhcc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~ 82 (181)
+.++|+++|.+|+|||||+|+|.+..+. ...|+ .......+...+..+.+|||||..++... ...++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4689999999999999999999988754 33343 33444556667889999999998776621 22232
Q ss_pred --ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEE
Q 030192 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
+.+|++++|+|+++.++......++. . .++|+++|+||+|+.+.. ..+++.+.++. +++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLL---E----LGIPCIVALNMLDIAEKQNIRIEIDALSARLGC--------PVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHH---H----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTS--------CEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHH---h----cCCCEEEEEECccchhhhhHHHHHHHHHHhcCC--------CEE
Confidence 68999999999987544433333332 2 279999999999986532 34445555543 588
Q ss_pred EccccCCCChHHHHHHHHHHhh
Q 030192 157 STCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 157 ~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
++||++|.|++++++.+.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987664
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=4.3e-25 Score=160.99 Aligned_cols=147 Identities=17% Similarity=0.247 Sum_probs=106.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCc-ccccCccce--eEEEEEECCEEEEEEEcCCCCCcc------cchhhccc--c
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF--NVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N 84 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--~ 84 (181)
..++|+++|++|+|||||+|+|.+... ....|.... ....+.. +..+.+|||||..++. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999998763 333443332 2333333 6789999999998775 34455554 6
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+|++++|+|+++.++ ...|+..+.. .++|+++++||+|+... ...+.+.+.++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 999999999987543 3344444443 47999999999998542 23445555554 36899999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030192 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~ 178 (181)
++|.|++++|+++.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988654
No 123
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=7.4e-25 Score=152.17 Aligned_cols=156 Identities=17% Similarity=0.329 Sum_probs=118.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|||||||++++.+..+. .+.||.+..+ ..+...+ +.+.+||++|.+++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 4589999999999999999999998765 4466666544 3455544 566789999999999988989999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|+|+++..++.....|+..+... ...+.|+++++||+|+.+.. ..++... + +...++.++++|++++.|+++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l----~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARA-F----AEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHHH
Confidence 99999888887777666544322 12468999999999986532 2222211 1 223345788999999999999
Q ss_pred HHHHHHHHh
Q 030192 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~~ 177 (181)
+|+.+.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998865
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=2.5e-24 Score=167.61 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=97.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc--ccccC--ccceeEEEEEECCEEEEEEEcCCCCCcccch--------hhcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~ 82 (181)
+..++|+++|++|+|||||+|+|.+... .+..+ |.......+...+..+.+|||||..++...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4678999999999999999999998753 23333 3334445677789999999999987655432 4467
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCcccCcceEEEEccc
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--ITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+.+|++++|+|++++.++..... +..++... .++|+++|+||+|+.+....+. +... . ..+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTE-IRELKAAH--PAAKFLTVANKLDRAANADALIRAIADG-T-------GTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH-H-------TSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc-C-------CCceEEEEE
Confidence 89999999999998877643222 11222221 2699999999999976543321 2221 0 135889999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030192 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~ 178 (181)
++|.|++++++++.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998775
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=1.6e-24 Score=171.68 Aligned_cols=156 Identities=21% Similarity=0.313 Sum_probs=107.5
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEE------------ECCEEEEEEEcCCCCCcccchhh
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE------------YKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~~~~~~~~ 80 (181)
..+.+||+++|.+|||||||++++.+..+. ...||.+..+.... ...+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 356799999999999999999999998875 34677777665431 13689999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++++|++++|+|+++.+.. ..|+..+.... .++|+++|+||+|+.+... .+++.... ...+.+++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHH-----HhcCCceEEE
Confidence 99999999999999876444 33443333321 3689999999999976433 22333322 2233468999
Q ss_pred cccCCCChHHHHHHHHHHhhh
Q 030192 159 CATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 159 S~~~~~gv~~~~~~i~~~~~~ 179 (181)
||++|.|+++++..+.+.+.+
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CC-----CTTHHHHHHHHHTC
T ss_pred ecCcccCHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=6.5e-24 Score=154.98 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=113.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccc--eeEEEEEECCEEEEEEEcCCCCCccc------chhhcc--cc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRP------LWRHYF--QN 84 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 84 (181)
+.++|+++|++|+|||||+|+|.+..+. ...|+.+ .....+...+..+.+|||||...+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4579999999999999999999988764 2344333 44455677888999999999887765 445555 68
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+|++++|+|+++. .....++...... ..+|+++++||+|+.+. ...+.+.+.++. +++++|+
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGV--------PVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS--------CEEECBG
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCC--------cEEEEEe
Confidence 9999999999864 3444555555543 23999999999997532 234556665554 5889999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030192 161 TSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~ 179 (181)
++|.|++++++.+.+.+..
T Consensus 148 ~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987654
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=3.2e-26 Score=161.93 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=95.1
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc----ccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc----
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN---- 84 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---- 84 (181)
...+.++|+++|++|+|||||+++|.+..+.. ..|+.+..+ ....+.+|||||++++...+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 34678999999999999999999999887643 233332222 56789999999999999888888877
Q ss_pred ccEEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCH
Q 030192 85 TQGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNA 136 (181)
Q Consensus 85 ~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~~ 136 (181)
+|++++|+|++ +++++.....|+..++... ...++|+++|+||+|+.+....
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 89999999999 8889988888888876542 1257999999999999876543
No 128
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.91 E-value=1.4e-23 Score=155.82 Aligned_cols=135 Identities=24% Similarity=0.424 Sum_probs=109.6
Q ss_pred cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC----------CcccHHHHHHHHHHHHcCCC
Q 030192 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (181)
.||.|+....+...++.+++||++|+++++..|.+++++++++|+|+|++ +..++.+...++..++.+..
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 35778888888899999999999999999999999999999999999664 67789999999999988776
Q ss_pred CCCCeEEEEEeCCCCCCC------------------CCHhHHHhhh-----CCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 116 LRDAVLLVFANKQDLPNA------------------MNAAEITDKL-----GLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 116 ~~~~piivv~nK~Dl~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
..+.|+++++||+|+.+. ...++....+ .....+..++.+++|||+++.||+++|..
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 678999999999998531 1222322221 22223446788899999999999999999
Q ss_pred HHHHhhhc
Q 030192 173 LSNNIASK 180 (181)
Q Consensus 173 i~~~~~~~ 180 (181)
+.+.+.++
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988764
No 129
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=2.6e-24 Score=161.71 Aligned_cols=134 Identities=26% Similarity=0.440 Sum_probs=107.4
Q ss_pred CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC----------cccHHHHHHHHHHHHcCCCC
Q 030192 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (181)
||.|+....+...++.+++||++|+++++..|..++++++++|+|+|+++ ..++.+...|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 46677777788889999999999999999999999999999999999998 46799999999999887666
Q ss_pred CCCeEEEEEeCCCCCC-----------------CCCHhHHHhhhC-----CCcc-cCcceEEEEccccCCCChHHHHHHH
Q 030192 117 RDAVLLVFANKQDLPN-----------------AMNAAEITDKLG-----LHSL-RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~Dl~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~S~~~~~gv~~~~~~i 173 (181)
.++|+++++||+|+.. +...++...... +... ...++.+++|||+++.||+++|.++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 7899999999999852 122333332221 1111 2357889999999999999999999
Q ss_pred HHHhhhc
Q 030192 174 SNNIASK 180 (181)
Q Consensus 174 ~~~~~~~ 180 (181)
.+.+.++
T Consensus 339 ~~~i~~~ 345 (353)
T 1cip_A 339 TDVIIKN 345 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.2e-23 Score=157.64 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=115.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-c--ccCccceeEEEEEECCEEEEEEEcCCCCCcc---------cchhhcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 82 (181)
...++|+++|++|+|||||++++.+.... . ...|.+.....+...+..+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 46789999999999999999999987743 1 1335555556666678899999999975432 1122344
Q ss_pred ccccEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
..+|++++|+|++++. ++.....++..+..... ++|+++|+||+|+.+....++..... +..+++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5699999999998876 67777777766655322 79999999999987643332222221 123456889999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030192 161 TSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~ 179 (181)
++|.|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=8.6e-24 Score=164.72 Aligned_cols=150 Identities=25% Similarity=0.349 Sum_probs=112.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCc--ccccC--ccceeEEEEEECCEEEEEEEcCCCC-Cccc--------chhhcc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQD-KIRP--------LWRHYF 82 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~~ 82 (181)
..++|+++|.||+|||||+|+|.+... .+..| |.......+...+..+.+|||||.. ++.. ....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 458999999999999999999998753 33333 4444556677789999999999987 5432 234567
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.+++.. +.+ +.+ .++|+++|+||+|+.+....+++.+... .+.+++++||++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAkt 388 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALK 388 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGG
T ss_pred hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCC
Confidence 899999999999988777543 233 232 3689999999999976544445544322 123588999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030192 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~ 178 (181)
|.|++++++++.+.+.
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998754
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=2.7e-24 Score=167.39 Aligned_cols=160 Identities=14% Similarity=0.163 Sum_probs=111.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCC----------CCCcccchh-
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG----------QDKIRPLWR- 79 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~- 79 (181)
...++|+++|.+|+|||||++++.+.... ...+ |.......+...+..+.+||||| ++++.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 35689999999999999999999977532 3333 22233356677888999999999 555555443
Q ss_pred hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEE
Q 030192 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+++... ....++...+.. .++|+++|+||+|+.+... .+++.+............++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 36788999999999987544 333444444443 5799999999999976432 2333332221111122357899
Q ss_pred ccccCCCChHHHHHHHHHHhhh
Q 030192 158 TCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
+||++|.|++++|+.+.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=4e-24 Score=160.20 Aligned_cols=156 Identities=24% Similarity=0.304 Sum_probs=114.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-EEEEEEEcCCC----CCcccchhhccc---ccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQ----DKIRPLWRHYFQ---NTQ 86 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~i~D~~g~----~~~~~~~~~~~~---~~d 86 (181)
.+|+++|.+|||||||++++.+.++. .. .+|...+...+...+ ..+.+|||||. ..+..+...+++ .+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 47999999999999999999987643 22 235555555566654 79999999994 334444455544 599
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEcccc
Q 030192 87 GLIFVVDSND---RDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
++++|+|+++ ++++.....|+..+.... ...++|+++|+||+|+.+.. ..+++.+.+... .+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~------~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD------YPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC------CCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC------CCEEEEECC
Confidence 9999999998 778888777766665432 23579999999999987542 123344433311 357899999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030192 162 SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~~~~ 179 (181)
++.|+++++.++.+.+.+
T Consensus 313 tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 313 TREGLRELLFEVANQLEN 330 (342)
T ss_dssp CSSTTHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999998865
No 134
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=6.9e-24 Score=162.77 Aligned_cols=161 Identities=17% Similarity=0.097 Sum_probs=113.0
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccccc----Cccc----------e---------eEEEEEECCEEEEEEEcC
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIG----------F---------NVETVEYKNISFTVWDVG 69 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~~~----------~---------~~~~~~~~~~~~~i~D~~ 69 (181)
..+..++|+++|++|+|||||+++|.+....... .+.+ . ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3467899999999999999999999875322110 0000 0 000001122689999999
Q ss_pred CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCC
Q 030192 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGL 145 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~~~~ 145 (181)
|+++|......++..+|++++|+|+++..+.....+++...... ..+|+++++||+|+.+.....+ +.+.+..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876566666655444322 2358999999999986532222 2222211
Q ss_pred CcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 146 ~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
....+++++++||++|.|++++++.+.+.+.
T Consensus 161 --~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 --TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp --STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred --hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1123567999999999999999999988664
No 135
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.91 E-value=2.1e-23 Score=157.28 Aligned_cols=132 Identities=26% Similarity=0.410 Sum_probs=98.2
Q ss_pred ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 030192 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.|+....+..+++.+++|||+|+++++..|..++++++++|+|+|+++ ..++.+...++..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 4566666777889999999999999999999999999999999999998 678999999999998876557
Q ss_pred CCeEEEEEeCCCCCCC------------------CCHhHHHhhh-----CCCccc-CcceEEEEccccCCCChHHHHHHH
Q 030192 118 DAVLLVFANKQDLPNA------------------MNAAEITDKL-----GLHSLR-QRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 118 ~~piivv~nK~Dl~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~S~~~~~gv~~~~~~i 173 (181)
++|+|+++||+|+... ...++..... .+.... ...+.+++|||+++.||+++|.++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 8999999999998521 2333333322 111111 346788999999999999999999
Q ss_pred HHHhhh
Q 030192 174 SNNIAS 179 (181)
Q Consensus 174 ~~~~~~ 179 (181)
.+.+.+
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=1.5e-24 Score=166.40 Aligned_cols=154 Identities=19% Similarity=0.158 Sum_probs=107.7
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcc--cc--cCccceeEEEEEECCE-EEEEEEcCCCCCcccc-------hhh
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPL-------WRH 80 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~--~~~~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~-------~~~ 80 (181)
+....++|+++|++|+|||||++++.+..+. +. ..|.......+...+. .+.+|||||+.++... ...
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 4457789999999999999999999988763 22 2244455566666554 8999999999877654 344
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+|++++|+|+... .....|+..+.. .++|+++|+||+|+.+.... +..+.+. +..+++++++||
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSA 177 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSA 177 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSS
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEEC
Confidence 77889999999999322 223334433333 37999999999999876544 2222222 233457889999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030192 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~ 178 (181)
++|.|++++|+.+.+.+.
T Consensus 178 ktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCTTSTTTHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999999874
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=2e-23 Score=161.84 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCc---------ccchhhcccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQN 84 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~ 84 (181)
.+|+++|.||+|||||+|+|.+.+.. ...| |.......+...+..+.+|||||.+.. ...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999988743 3333 333445677788899999999997642 3446677899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEccccCC
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (181)
+|++++|+|+.+..+.. ..++..++.. .++|+++|+||+|+.+.. ..+....+ + ..+. .++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~----~-~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPEL----Y-SLGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHH----G-GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHH----H-hcCCCCEEEEeccCC
Confidence 99999999998754432 2333444432 368999999999975320 11110111 1 1122 4679999999
Q ss_pred CChHHHHHHHHHHhh
Q 030192 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~ 178 (181)
.|++++++.+.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 151 INLDTMLETIIKKLE 165 (439)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999988775
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=5.6e-24 Score=164.77 Aligned_cols=149 Identities=22% Similarity=0.293 Sum_probs=100.9
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcccccCccce----eEEEEEECCEEEEEEEcCCCC--------Ccccchhhcccc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN 84 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 84 (181)
..+|+++|.+|+|||||+|+|.+.......++.+. .+..+...+..+.+|||||.+ .+...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 36899999999999999999998776433333333 333444567789999999985 455667778899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEccccCC
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (181)
+|++++|+|+.+..+.. ..++...+.. .++|+++|+||+|+.+... +. ..++ ..+. .++++||++|
T Consensus 83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~-----~~~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI-----YDFY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CC-----CSSG-GGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--hH-----HHHH-HcCCCCeEEEeCcCC
Confidence 99999999998765543 3456666654 5789999999999865321 00 1111 1222 5779999999
Q ss_pred CChHHHHHHHHHHhh
Q 030192 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~ 178 (181)
.|++++++++.+.+.
T Consensus 150 ~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFK 164 (436)
T ss_dssp BTHHHHHHHHHHTGG
T ss_pred CChHHHHHHHHHhcC
Confidence 999999999998775
No 139
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.89 E-value=2.6e-23 Score=154.86 Aligned_cols=133 Identities=26% Similarity=0.368 Sum_probs=106.4
Q ss_pred CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 030192 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (181)
+|.|+....+...++.+++||++|+++++..|..++++++++|+|+|++ +..++.+...||..++.....
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 4677778888889999999999999999999999999999999999998 678899999999999988766
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhHHHhh----h-------CCCcccC-----------cceEEEE
Q 030192 117 RDAVLLVFANKQDLPNA-----------------MNAAEITDK----L-------GLHSLRQ-----------RHWYIQS 157 (181)
Q Consensus 117 ~~~piivv~nK~Dl~~~-----------------~~~~~~~~~----~-------~~~~~~~-----------~~~~~~~ 157 (181)
.+.|+++++||+|+.+. ...++..+. + .+..... ..+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999998531 112222111 1 1111111 4588999
Q ss_pred ccccCCCChHHHHHHHHHHhhh
Q 030192 158 TCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
|||+++.||+.+|..+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999887753
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=2.2e-23 Score=161.80 Aligned_cols=151 Identities=16% Similarity=0.186 Sum_probs=101.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc--ccccCcc--ceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTI--GFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (181)
+..++|+++|++|+|||||+|+|.+... .+..+++ ......+...+..+.+|||||..++... ...++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3568999999999999999999988653 2333332 2333456778899999999997654433 23356
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.+... ..++ ..+. ++|+++|+||+|+.+...... ...+. ...+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~-~~l~-----~~piivV~NK~Dl~~~~~~~~------~~~~~-~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIY-EQVK-----HRPLILVMNKIDLVEKQLITS------LEYPE-NITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHH-HHHT-----TSCEEEEEECTTSSCGGGSTT------CCCCT-TCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHH-Hhcc-----CCcEEEEEECCCCCcchhhHH------HHHhc-cCCcEEEEECCC
Confidence 88999999999998766544 3333 3333 369999999999876432221 11111 344688999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030192 163 GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~~ 179 (181)
|.|++++++.+.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988754
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=7.8e-23 Score=158.48 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=106.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc--cccCc--cceeEEEEEECCEEEEEEEcCCCCCcccc------------hh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPL------------WR 79 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------~~ 79 (181)
..++|+++|++|||||||+|++.+.... +..|. .......+...+..+.+|||+|..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 3579999999999999999999988653 33332 22333456677889999999997433221 12
Q ss_pred hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEE
Q 030192 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+++..+.+. .++...+.. .++|+++++||+|+.+... .+++.+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 35577999999999987666543 233333332 4799999999999875432 3333322221112223447889
Q ss_pred ccccCCCChHHHHHHHHHHhhh
Q 030192 158 TCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
+||++|.|++++|+.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 142
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.89 E-value=3e-22 Score=157.76 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=89.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC------------------Cccc-------ccCccceeEEEEEECCEEEEEEEcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG------------------EIVT-------TIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~------------------~~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.+..+|+++|++|+|||||+++|+.. .... ...|.......+...++.+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 46689999999999999999999621 1111 1224445566778889999999999
Q ss_pred CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
|+.++...+..+++.+|++++|+|+++..+.+... .|..... .++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999876655443 3443333 47899999999999754
No 143
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-23 Score=145.37 Aligned_cols=125 Identities=27% Similarity=0.393 Sum_probs=95.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcccc----cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc----c
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----T 85 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~ 85 (181)
....++|+++|++|||||||++++.+..+... .++.+. ......+.+|||||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 35778999999999999999999998875432 222222 2256789999999999998888877776 8
Q ss_pred cEEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030192 86 QGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 86 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 143 (181)
|++++|+|++ +++++.....|+..++... ...++|+++|+||+|+.+....+++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 7888888888887776532 12479999999999998876666665544
No 144
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=2.9e-22 Score=148.19 Aligned_cols=154 Identities=19% Similarity=0.107 Sum_probs=108.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc--ccC--ccceeEEEEEECCEEEEEEEcCCCC---------Ccccchhhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQD---------KIRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 81 (181)
.+..+|+++|++|+|||||+|++.+..... ..+ |.......+...+..+.+|||||.. .+......+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 345589999999999999999999987542 222 2222233456678899999999987 344455677
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcccCcce-EEEEcc
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHW-YIQSTC 159 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~S 159 (181)
++.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+.. .....+....+. +..++ .++++|
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~i~iS 155 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDIVPIS 155 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEEEECC
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCceEEEE
Confidence 889999999999976 33333455555443 4789999999999876 222222222121 11122 688999
Q ss_pred ccCCCChHHHHHHHHHHhh
Q 030192 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~~~ 178 (181)
|+++.|++++++.+...+.
T Consensus 156 A~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTTHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHhCC
Confidence 9999999999999987654
No 145
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=2e-23 Score=162.54 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=102.4
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee----EEEEEECCEEEEEEEcCC--------CCCcccch
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG--------QDKIRPLW 78 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~D~~g--------~~~~~~~~ 78 (181)
........+|+++|.+|||||||+|+|.+..+....++.+.+ ...+...+..+.+||||| ++++...+
T Consensus 17 ~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 17 RGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp ------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred ChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence 334456789999999999999999999988765333333333 333444678999999999 55666677
Q ss_pred hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEc
Q 030192 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+++.+|++++|+|..+. +.....++...+.. .++|+++|+||+|+.+.. ....+.+.+ ..+ ..+++
T Consensus 97 ~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l----g~~-~~~~i 164 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL----GFG-EPYPI 164 (456)
T ss_dssp HHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG----SSS-SEEEC
T ss_pred HhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc----CCC-ceEEe
Confidence 8888999999999998653 44455667777665 579999999999986432 111111111 111 24589
Q ss_pred cccCCCChHHHHHHHHHHhh
Q 030192 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 S~~~~~gv~~~~~~i~~~~~ 178 (181)
||++|.|++++++.+.+.+.
T Consensus 165 SA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 165 SGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CTTTCTTHHHHHHHHHTTGG
T ss_pred ecccccchHHHHHHHHhhcc
Confidence 99999999999999987664
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=3.2e-22 Score=145.17 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=105.1
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCc-cc-ccC---ccceeEEEEEECCEEEEEEEcCCCCCcccc----------
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI-VT-TIP---TIGFNVETVEYKNISFTVWDVGGQDKIRPL---------- 77 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------- 77 (181)
+....++|+++|++|+|||||++++.+... .. ..+ |.......+...+..+.+|||||..++...
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 345779999999999999999999998763 32 222 334445566778899999999997654322
Q ss_pred -hhhccccccEEEEEEECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEe-CCCCCCCCCHhH------------HHhh
Q 030192 78 -WRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFAN-KQDLPNAMNAAE------------ITDK 142 (181)
Q Consensus 78 -~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~n-K~Dl~~~~~~~~------------~~~~ 142 (181)
...+++.+|++++|+|+++.... .....++....... ...|.++++| |+|+... ...+ +...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 22366889999999999863322 22333444433211 1345666665 9999753 2332 2222
Q ss_pred hCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
+..... .+..+++||++|.|++++|..+.+.+.++
T Consensus 175 ~~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 175 CGGRIC---AFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCeEE---EecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 222110 01116899999999999999999987653
No 147
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.88 E-value=3.5e-23 Score=155.57 Aligned_cols=121 Identities=18% Similarity=0.326 Sum_probs=92.4
Q ss_pred CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC----------CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
..+.+++|||+|+++++..|..++++++++|+|||++ +..++.+...|+..+.......+.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4589999999999999999999999999999999998 788999999999998887555689999999999
Q ss_pred CCCCCCC-----------------------HhHHHhhhCCCc-----------ccCcceEEEEccccCCCChHHHHHHHH
Q 030192 129 DLPNAMN-----------------------AAEITDKLGLHS-----------LRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 129 Dl~~~~~-----------------------~~~~~~~~~~~~-----------~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
|+.+... .++........+ .....+.+++|||+++.||+++|..+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843210 111111100000 012345678999999999999999999
Q ss_pred HHhhh
Q 030192 175 NNIAS 179 (181)
Q Consensus 175 ~~~~~ 179 (181)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.88 E-value=1.3e-23 Score=165.08 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=112.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCc--cceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPT--IGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~--~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+..+|+++|++|+|||||+++|.+..+.. ..++ ..+....+.. .+..+.+|||||++.|...+..+++.+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 56889999999999999999998776542 2222 2222222333 345799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCC-cccCcceEEEEccccCCCChHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH-SLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
+|+++....+.. ..+..... .++|+++++||+|+.+.. ...+....+... ......++++++||++|.|+++
T Consensus 83 VDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999876554433 33333332 478999999999987532 222222222211 1112357899999999999999
Q ss_pred HHHHHHHHhh
Q 030192 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~~~ 178 (181)
+++.+...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999987653
No 149
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=4.8e-22 Score=152.76 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=102.4
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCc---c-cccC--ccceeEEEEEE---------------C--------CEEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI---V-TTIP--TIGFNVETVEY---------------K--------NISF 63 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~-~~~~--~~~~~~~~~~~---------------~--------~~~~ 63 (181)
..+..++|+++|+.++|||||+++|.+... . +..+ |....+..... . ...+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 446779999999999999999999986432 1 1122 44433322211 1 1689
Q ss_pred EEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHH
Q 030192 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEI 139 (181)
Q Consensus 64 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~ 139 (181)
.+|||||+++|.......+..+|++++|+|+++........+.+..+... ...|+++++||+|+.+... .+++
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i 160 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence 99999999998888777788899999999998653222222222222111 2358999999999976532 2333
Q ss_pred HhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
.+.+... ...+++++++||++|.|++++++.+.+.+.
T Consensus 161 ~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 161 KEFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3333211 123567999999999999999999988664
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=6e-23 Score=160.50 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=109.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC----cc----cc--cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE----IV----TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~~----~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (181)
.+.++|+++|++++|||||+++|.+.. .. +. ..|....+..+...+..+.+|||||+++|......++..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 467899999999999999999999876 21 11 224444455567788999999999999998888888999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc----CcceEEEEccc
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----QRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~ 160 (181)
+|++++|+|+++...-+. .+.+. .+.. .++|+++++||+|+.+....++..+.+.. .++ -.+++++++||
T Consensus 97 aD~~ilVvda~~g~~~qt-~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~-~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQT-GEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKS-ILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp CCEEEEEEETTTCSCHHH-HHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHH-HHHHSSSGGGCCEEECCT
T ss_pred CCEEEEEEecCCCccHHH-HHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHH-HHhhhcccccceEEEEEC
Confidence 999999999987422221 22222 2222 36888999999999864322222221110 010 11567999999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030192 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~ 178 (181)
++|.|++++++.+.+.+.
T Consensus 171 ~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 171 KTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhc
Confidence 999999999999988653
No 151
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=5.5e-22 Score=157.94 Aligned_cols=154 Identities=21% Similarity=0.235 Sum_probs=107.1
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC--cc---------cc---c----CccceeEEEEEEC-----CEEEEEEEcCCCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV---------TT---I----PTIGFNVETVEYK-----NISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~---------~~---~----~~~~~~~~~~~~~-----~~~~~i~D~~g~~ 72 (181)
+..+|+++|+.++|||||+++|+... +. .. . .|.......+.+. .+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999997621 11 00 0 1222222334332 4789999999999
Q ss_pred CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccc
Q 030192 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLR 149 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~ 149 (181)
+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++++||+|+.+... .+++.+.++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~-- 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA-- 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc--
Confidence 99999999999999999999999877766666555443 2 3789999999999976431 233444443321
Q ss_pred CcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
..++++||++|.|++++++.+.+.+..
T Consensus 156 ---~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 ---TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp ---TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ---ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 137799999999999999999987754
No 152
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.87 E-value=1.2e-21 Score=156.01 Aligned_cols=159 Identities=20% Similarity=0.174 Sum_probs=107.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccccc-----CccceeEEEEE----------------ECCEEEEEEEcCCCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~ 73 (181)
.+..+|+++|++|+|||||++++.+..+.... ++.+..+.... .....+++|||||+++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999876543322 23333322211 1122699999999999
Q ss_pred cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------Hh--
Q 030192 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AA-- 137 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~~-- 137 (181)
|...+..+++.+|++++|+|+++.-..+.. ..+..... .++|+++++||+|+.+... .+
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~-e~l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHH-HHHHHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 999999899999999999999883222221 22222222 4789999999999864211 01
Q ss_pred ---------HHHhhhCCCcc----------cCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 138 ---------EITDKLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 138 ---------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
++...+....+ ....++++++||++|.|++++++++...+.
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11111111111 024568999999999999999999987653
No 153
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=4.8e-22 Score=143.20 Aligned_cols=163 Identities=15% Similarity=0.148 Sum_probs=103.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc-----cCccceeEEEEEECCEEEEEEEcCCC--------CCcccchhhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQ--------DKIRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~ 81 (181)
...++|+++|.+|+|||||+|++++...... ..|.......+...+..+.+|||||. +++......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 5779999999999999999999998875421 13444555667788999999999996 3343333333
Q ss_pred c----ccccEEEEEEECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CCcccCcc
Q 030192 82 F----QNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG----LHSLRQRH 152 (181)
Q Consensus 82 ~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~ 152 (181)
+ +.+|++++|+|+++.... ....+++...... ...+.|+++++||.|+.+. ..++...... ....+.++
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHHcC
Confidence 3 899999999999753222 2233444444332 2236899999999999753 2222211100 00111122
Q ss_pred --eEEEEcccc---CCCChHHHHHHHHHHhhh
Q 030192 153 --WYIQSTCAT---SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 153 --~~~~~~S~~---~~~gv~~~~~~i~~~~~~ 179 (181)
+.++..++. ++.|++++++.+.+.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 223333332 268999999999887764
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=5.6e-22 Score=153.49 Aligned_cols=158 Identities=16% Similarity=0.065 Sum_probs=104.5
Q ss_pred HHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCc---cc----------c-----------------------cCccce
Q 030192 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI---VT----------T-----------------------IPTIGF 51 (181)
Q Consensus 8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~----------~-----------------------~~~~~~ 51 (181)
++.+...+..++|+++|++++|||||+++|++... .. . ..|...
T Consensus 15 ~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~ 94 (434)
T 1zun_B 15 YLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDV 94 (434)
T ss_dssp -CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCC
T ss_pred HHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEe
Confidence 33444445678999999999999999999975431 00 0 112223
Q ss_pred eEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 52 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
.+..+...+..+.+|||||+++|...+..++..+|++++|+|+++....+ ..+++...... ..+|+++++||+|+.
T Consensus 95 ~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 95 AYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLN 170 (434)
T ss_dssp EEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTT
T ss_pred eeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCC
Confidence 34456667889999999999999988888899999999999998765432 23333222221 124799999999997
Q ss_pred CCC--CHhHHHh----hhCCCcccCcceEEEEccccCCCChHHH
Q 030192 132 NAM--NAAEITD----KLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 132 ~~~--~~~~~~~----~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+.. ..+++.. .+....+....++++++||++|.|++++
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 632 1111221 1111111123478999999999999874
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=6.5e-22 Score=153.12 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=104.0
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCc--cc--------------------------------ccCccceeEEEEEEC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--VT--------------------------------TIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~--------------------------------~~~~~~~~~~~~~~~ 59 (181)
.+..++|+++|++|+|||||+++|++..- .. ...|.......+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45679999999999999999999955310 00 112444445567778
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCccc---HH---HHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---VV---EARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~ 132 (181)
+..+.+|||||+++|......+++.+|++++|+|+++... +. ...+.+... .. .++| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCcc
Confidence 8899999999999999998889999999999999987532 11 122222222 11 3555 999999999864
Q ss_pred CC----CHhHHHh----hhCCCcccC-cceEEEEccccCCCChHHHHH
Q 030192 133 AM----NAAEITD----KLGLHSLRQ-RHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 133 ~~----~~~~~~~----~~~~~~~~~-~~~~~~~~S~~~~~gv~~~~~ 171 (181)
.. ..+++.. .+....+.. .+++++++||++|.|++++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 1112222 111111111 256899999999999998654
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=9.7e-22 Score=148.57 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=104.1
Q ss_pred ccE-EEEEcCCCCChHHHHhhHhcCCccc---ccCccceeEEEEEECCEEEEEEEcCCCCC---------cccchhhccc
Q 030192 17 EMR-ILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQ 83 (181)
Q Consensus 17 ~~~-i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~ 83 (181)
.++ |+++|++|+|||||+|++.+..... ..+|.+.....+...+..+.+|||+|..+ +...+ ..+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 455 9999999999999999999877531 24455566677777888999999999622 22222 2467
Q ss_pred cccEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh--HH----HhhhCCCcccCcceEEE
Q 030192 84 NTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA--EI----TDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~----~~~~~~~~~~~~~~~~~ 156 (181)
.+|++++|+|++++.+ .......+...+......+.|+++|+||+|+.+....+ +. ...+. ..+.+++
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~-----~~~~~~~ 331 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY-----SPIFDVI 331 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC-----SCEEEEE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc-----CCCCcEE
Confidence 8999999999987751 22222333333333333578999999999987643111 01 12221 1234678
Q ss_pred EccccCCCChHHHHHHHHHHhhh
Q 030192 157 STCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 157 ~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
++|++++.|++++++.+.+.+..
T Consensus 332 ~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 332 PISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999999887653
No 157
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=1.6e-21 Score=155.12 Aligned_cols=155 Identities=21% Similarity=0.229 Sum_probs=109.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC--cc---------cc-------cCccceeEEEEEE-----CCEEEEEEEcCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV---------TT-------IPTIGFNVETVEY-----KNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~---------~~-------~~~~~~~~~~~~~-----~~~~~~i~D~~g~ 71 (181)
++..+|+++|+.++|||||+++|+... +. .. ..|.......+.+ ..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999997521 11 00 0122111223333 2478999999999
Q ss_pred CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~ 148 (181)
.+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++++||+|+.+... .+++.+.++..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~-- 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD-- 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC--
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccCHHHHHHHHHHhhCCC--
Confidence 999998889999999999999999887777666655443 2 4799999999999976431 12333333322
Q ss_pred cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
...++++||++|.|++++++.+.+.+..
T Consensus 157 ---~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 ---PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ---GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ---cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 1137899999999999999999987753
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.87 E-value=6.3e-22 Score=149.97 Aligned_cols=146 Identities=8% Similarity=0.035 Sum_probs=108.2
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
+|+++|++++|||||+++|. ....|.+..+..+...+..+.+|||||+++|.......++.+|++++|+| +. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-G 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-C
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-C
Confidence 99999999999999999998 33455566666677778899999999999998888888899999999999 53 3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeE-EEEEe-CCCCCCCCCHh----HHHhhhCCCcccCcceEEEE--ccccC---CCChH
Q 030192 99 RVVEARDELHRMLNEDELRDAVL-LVFAN-KQDLPNAMNAA----EITDKLGLHSLRQRHWYIQS--TCATS---GEGLY 167 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~S~~~---~~gv~ 167 (181)
......+++..... .++|. ++++| |+|+ +....+ ++.+.+... ....+++++ +||++ +.|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 33444444443332 35666 88888 9999 532222 222222211 113468999 99999 99999
Q ss_pred HHHHHHHHHhh
Q 030192 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~i~~~~~ 178 (181)
++++.+.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999987754
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=8.5e-23 Score=158.04 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=101.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC--Cccc--------------------------------ccCccceeEEEEEECC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT--------------------------------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~~~~~~~~~~~~~~ 60 (181)
+..++|+++|++|+|||||+++|++. .+.. ...|.......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 56789999999999999999999764 2210 1124444445567788
Q ss_pred EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHH------HHHHHcCCCCCC-CeEEEEEeCCCCCCC
Q 030192 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE------LHRMLNEDELRD-AVLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~------~~~~~~~~~~~~-~piivv~nK~Dl~~~ 133 (181)
..+.+|||||+++|...+..+++.+|++++|+|+++ .+++....| ....+.. .+ +|+++++||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEcccCCCc
Confidence 999999999999999999999999999999999987 555433221 1111111 23 468999999999763
Q ss_pred C----C----HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 134 M----N----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 134 ~----~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
. . .+++...+....+....++++++||++|.|+.+++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 1 1 11222222111122224689999999999997543
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=4.5e-22 Score=153.03 Aligned_cols=161 Identities=18% Similarity=0.123 Sum_probs=108.6
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCc---c-cccC--ccceeEEEEEEC-----------------------CEEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI---V-TTIP--TIGFNVETVEYK-----------------------NISF 63 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~-~~~~--~~~~~~~~~~~~-----------------------~~~~ 63 (181)
..+..++|+++|++++|||||+++|.+... . +..+ |....+...... ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 346678999999999999999999985432 1 1122 444443332220 1689
Q ss_pred EEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHH
Q 030192 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEI 139 (181)
Q Consensus 64 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~ 139 (181)
.+|||||+++|.......+..+|++++|+|+++........+.+..+... ...|+++++||+|+.+... .+++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999998887777788899999999998643112222222211111 2367999999999986432 2223
Q ss_pred HhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
...+... ...+++++++||++|.|++++++.+.+.+.
T Consensus 163 ~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3322211 123568999999999999999999988654
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=4.3e-22 Score=155.97 Aligned_cols=153 Identities=20% Similarity=0.167 Sum_probs=103.0
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC--ccc--------------------------------ccCccceeEEEEEEC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IVT--------------------------------TIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~--------------------------------~~~~~~~~~~~~~~~ 59 (181)
.+..++|+++|++|+|||||+++|++.. +.. ...|.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4567999999999999999999997541 000 012444455667778
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHH-----HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----ARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 134 (181)
+..+.+|||||+++|......+++.+|++++|+|+++...... ........+... ..+|+|+++||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 8999999999999999999999999999999999987543211 222222222221 235799999999997622
Q ss_pred --CHhHHHhhh----CCCcccCcceEEEEccccCCCChHH
Q 030192 135 --NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 135 --~~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
..+++...+ ....+...+++++++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 122222211 1111223367899999999999985
No 162
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.86 E-value=1.2e-22 Score=158.54 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=106.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cC--ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+..+|+++|++++|||||+++|.+..+... .+ |.......+...+..+.+|||||++.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4678999999999999999999987554321 11 22222233444567899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cccC--cceEEEEccccCCCChH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH--SLRQ--RHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~S~~~~~gv~ 167 (181)
+|+++....+. .+.+..... .++|+++++||+|+.+... +++...+... .... ..++++++||++|.|++
T Consensus 82 Vda~~g~~~qT-~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQT-IEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTT-HHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHH-HHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99987322111 122222222 4789999999999975311 1122211111 1111 24789999999999999
Q ss_pred HHHHHHHH
Q 030192 168 EGLDWLSN 175 (181)
Q Consensus 168 ~~~~~i~~ 175 (181)
++++.+..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99999865
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=4.9e-22 Score=152.19 Aligned_cols=158 Identities=18% Similarity=0.100 Sum_probs=108.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC-------cc------------cccCccceeEEEEEECCEEEEEEEcCCCCCccc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE-------IV------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (181)
..++|+++|++++|||||+++|.+.. +. ....|.+.....+...+..+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 45899999999999999999998631 10 011233333444556778999999999999988
Q ss_pred chhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCcccC
Q 030192 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLRQ 150 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~ 150 (181)
....+++.+|++++|+|+++....+. .+.+... .. .++| +++++||+|+.+... . +++.+.+....+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888999999999999987554333 3333222 22 3677 789999999975211 1 12222221111222
Q ss_pred cceEEEEccccCCCC----------hHHHHHHHHHHhh
Q 030192 151 RHWYIQSTCATSGEG----------LYEGLDWLSNNIA 178 (181)
Q Consensus 151 ~~~~~~~~S~~~~~g----------v~~~~~~i~~~~~ 178 (181)
..++++++||++|.| ++++++.+.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 246799999999764 8899998887654
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.86 E-value=1.4e-21 Score=150.10 Aligned_cols=159 Identities=20% Similarity=0.170 Sum_probs=110.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC--------Cccc------------ccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG--------EIVT------------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~~------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (181)
+..++|+++|++|+|||||+++|.+. .+.. ...|.......+...+..+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 56789999999999999999999873 1111 112333444456667789999999999999
Q ss_pred ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCcc
Q 030192 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 148 (181)
......+++.+|++++|+|+++.... ...+++..... .++| +++++||+|+.+... .+ ++.+.+....+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 88888889999999999999876543 33444443332 3677 899999999974211 11 12222211111
Q ss_pred cCcceEEEEccccCCCC------------------hHHHHHHHHHHhh
Q 030192 149 RQRHWYIQSTCATSGEG------------------LYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~g------------------v~~~~~~i~~~~~ 178 (181)
....++++++||++|.| ++++++.+.+.+.
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 12246799999999987 7788887776553
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.5e-22 Score=160.66 Aligned_cols=153 Identities=18% Similarity=0.144 Sum_probs=103.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc--c--------------------------------ccCccceeEEEEEECC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--T--------------------------------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~--------------------------------~~~~~~~~~~~~~~~~ 60 (181)
+..++|+++|++|+|||||+++|++.... . ...|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45789999999999999999999865321 0 1124444455677788
Q ss_pred EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc---cH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-
Q 030192 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (181)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~- 134 (181)
..+.+|||||+++|......+++.+|++++|+|+++.. ++ .............. ..+|+|+|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 99999999999999999999999999999999997531 10 01111111222221 235699999999997621
Q ss_pred -CHhHHHh----hhCCCcccCcceEEEEccccCCCChHHH
Q 030192 135 -NAAEITD----KLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 135 -~~~~~~~----~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
..+++.. .+....+....++++++||++|.|++++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1112222 1111112223568999999999999865
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=6.6e-22 Score=141.83 Aligned_cols=167 Identities=13% Similarity=0.107 Sum_probs=98.8
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cC----ccceeEEEEEECCEEEEEEEcCCCC-----------Cc
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP----TIGFNVETVEYKNISFTVWDVGGQD-----------KI 74 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~----~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~ 74 (181)
+.+....++|+++|++|+|||||+|++++..+... .+ |.......+...+..+.+|||||.. .+
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence 34456779999999999999999999998876432 22 3444455677788999999999943 23
Q ss_pred ccchhhccccccEEEEEEECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccC
Q 030192 75 RPLWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQ 150 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~ 150 (181)
...+..+.+.+|++++|+|+++.... .....++...+... ...|+++|+||+|+.+....++...... ....+.
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 34445556678999999999765442 22223333322211 2368999999999865433221111000 000111
Q ss_pred cceEEEEccccC-----CCChHHHHHHHHHHhhh
Q 030192 151 RHWYIQSTCATS-----GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 151 ~~~~~~~~S~~~-----~~gv~~~~~~i~~~~~~ 179 (181)
.+..++.++... +.++.+++..+.+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 222344454443 36899999988877654
No 167
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=7.9e-22 Score=144.16 Aligned_cols=157 Identities=15% Similarity=0.234 Sum_probs=88.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-c-c-------cCccceeEEEEEE----CCEEEEEEEcCCCCC-------c
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T-T-------IPTIGFNVETVEY----KNISFTVWDVGGQDK-------I 74 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~-~-------~~~~~~~~~~~~~----~~~~~~i~D~~g~~~-------~ 74 (181)
...++|+++|.+|+|||||+|++++.... . . .+|.+........ ..+.+.+|||||..+ +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 45689999999999999999998776533 2 2 4556655544433 336999999999732 2
Q ss_pred ccch-------hhccc-------------cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192 75 RPLW-------RHYFQ-------------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 75 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 134 (181)
..+. ..++. .+|+++++++.+.. ++......+...+.. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 2222 22222 37899999987642 222333334444443 79999999999987543
Q ss_pred CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
+.......+. ..+...+++++++|++++.|++++++.+.+.+
T Consensus 161 e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHH-HHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 3332222211 11223455678899999999999999987754
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.85 E-value=7.3e-21 Score=140.47 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=100.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-------cccCc----------------------cce--------------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------IGF-------------- 51 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-------~~~~~----------------------~~~-------------- 51 (181)
....+|+++|.+|+|||||+|+|.+..+. +..|+ ...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999988753 11222 000
Q ss_pred -----------eEEEEEE-CCEEEEEEEcCCCC-------------CcccchhhccccccEEE-EEEECCCcccHHHHHH
Q 030192 52 -----------NVETVEY-KNISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD 105 (181)
Q Consensus 52 -----------~~~~~~~-~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 105 (181)
....+.. ....+.+|||||.. .+......+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0001111 14689999999953 23445667778888776 6999976544333222
Q ss_pred HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
+ ...+.. .+.|+++|+||+|+.+... ..+..+. ..........+++++||++|.|++++++.+.+
T Consensus 184 ~-~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 I-AKEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp H-HHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred H-HHHhCC---CCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 3 333332 4789999999999876433 2222211 11111112247889999999999999998765
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=1.4e-22 Score=157.99 Aligned_cols=157 Identities=15% Similarity=0.163 Sum_probs=91.4
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhcC--Ccc--------------------------------cccCccceeEEE
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVET 55 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~--------------------------------~~~~~~~~~~~~ 55 (181)
+....+..++|+++|++++|||||+++|+.. .+. ....|.+..+..
T Consensus 36 ~~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~ 115 (467)
T 1r5b_A 36 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY 115 (467)
T ss_dssp HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred HhhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEE
Confidence 3344567789999999999999999999641 110 012244444445
Q ss_pred EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc---cHH---HHHHHHHHHHcCCCCCCCe-EEEEEeCC
Q 030192 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDAV-LLVFANKQ 128 (181)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~ 128 (181)
+...+..+.+|||||+++|......+++.+|++++|+|+++.. +|. ...+.+..... .++| +++++||+
T Consensus 116 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~ 191 (467)
T 1r5b_A 116 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKM 191 (467)
T ss_dssp EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECT
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECc
Confidence 6667889999999999999998888899999999999998752 111 11111211111 3566 99999999
Q ss_pred CCCCCC-C---Hh----HHHhhhCCC-ccc-CcceEEEEccccCCCChHHHH
Q 030192 129 DLPNAM-N---AA----EITDKLGLH-SLR-QRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 129 Dl~~~~-~---~~----~~~~~~~~~-~~~-~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|+.... . .+ ++...+... .+. ..+++++++||++|.|+++++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 996421 1 11 122221111 111 135789999999999998754
No 170
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.84 E-value=1.5e-19 Score=142.46 Aligned_cols=115 Identities=22% Similarity=0.200 Sum_probs=84.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC--cc----------------c-------ccCccceeEEEEEECCEEEEEEEcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------T-------TIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~----------------~-------~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (181)
++..+|+++|++|+|||||+++|+... +. . ...|.......+...+..+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 567899999999999999999998631 10 0 0012223345577789999999999
Q ss_pred CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 134 (181)
|+.+|......+++.+|++++|+|+++....+ ....+. .+.. .++|+++++||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~-~~~~---~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLME-VTRL---RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHH-HHTT---TTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHH-HHHH---cCCCEEEEEcCcCCcccc
Confidence 99999988888999999999999998754322 223333 3332 478999999999997643
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1.9e-22 Score=160.98 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=83.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc----------------------------------cccCccceeEEEEEEC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV----------------------------------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 59 (181)
.+..++|+++|++|+|||||+++|++.... ....|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456789999999999999999999642100 0011333333445556
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~ 132 (181)
+..+.+|||||+.+|......++..+|++|+|+|+++.. ++ ......+. .+.. .++| +|+|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHH---SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHH---cCCCeEEEEEecccccc
Confidence 788999999999999999888999999999999997532 11 11111111 2221 2454 999999999975
Q ss_pred CC--CH----hHHHhhh-CCCcccCcceEEEEccccCCCChH
Q 030192 133 AM--NA----AEITDKL-GLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 133 ~~--~~----~~~~~~~-~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
.. .. +++...+ ....+...+++++++||++|.|++
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 21 11 2233333 223333446789999999999998
No 172
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=9.2e-22 Score=148.79 Aligned_cols=159 Identities=14% Similarity=0.240 Sum_probs=84.3
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc-cc---------cCccceeEEEE--EEC--CEEEEEEEcCCC-------C
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TT---------IPTIGFNVETV--EYK--NISFTVWDVGGQ-------D 72 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~---------~~~~~~~~~~~--~~~--~~~~~i~D~~g~-------~ 72 (181)
....++|+++|++|+|||||++++.+.... .. .++.+.....+ ... ...+.+|||||. +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 356689999999999999999998665432 11 13444433332 222 347999999998 6
Q ss_pred Ccccchh-------hcccccc-------------EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 73 KIRPLWR-------HYFQNTQ-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~-------~~~~~~d-------------~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
.+..++. .+++.++ +++|+++.+ ..++......+...+. .++|+|+|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCC
Confidence 6666655 5555443 344444432 4455555544444443 4789999999999876
Q ss_pred CCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
..+...+.... ...++..+++++++||+++.| ++.|..+.+.+.+
T Consensus 189 ~~ev~~~k~~i-~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 189 LKERERLKKRI-LDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHH-HHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 43332221111 122334567889999999998 8888887777654
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.83 E-value=5.3e-21 Score=148.75 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=102.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC--Ccc--------------------------------cccCccceeEEEEEECC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~ 60 (181)
+..++|+++|++|+|||||+++|++. .+. ....|....+..+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999764 111 01235555556777788
Q ss_pred EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc---cHH---HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCC
Q 030192 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDA-VLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-piivv~nK~Dl~~~ 133 (181)
..+.+|||||+++|......++..+|++++|+|+++.. +++ ...+.+... .. .++ ++++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 99999999999999998889999999999999997542 110 222222222 21 345 49999999999731
Q ss_pred --CCHhH----HHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 134 --MNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 134 --~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
...++ +...+....+...+++++++||++|.|++++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11111 2211111111122467999999999998743
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.83 E-value=1.1e-19 Score=147.37 Aligned_cols=115 Identities=23% Similarity=0.144 Sum_probs=87.9
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcC--Cc------------c-------cccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~------------~-------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (181)
.++..+|+++|++|+|||||+++|+.. .+ . ...+|.......+...++.+++|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 356789999999999999999999831 11 0 11334555556677789999999999999
Q ss_pred CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
+|...+..+++.+|++++|+|+++..+.+....| ..... .++|+++++||+|+...
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccC
Confidence 9999999999999999999999987776655443 33333 37899999999998764
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=7.1e-20 Score=132.98 Aligned_cols=123 Identities=13% Similarity=0.172 Sum_probs=85.1
Q ss_pred HHHHhhhc--ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192 7 KLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 7 ~~~~~~~~--~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (181)
.+++++.. .+.++|+++|++|+|||||+|++.+.... ...+ +.......+...+..+.+|||||+.++......
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~ 103 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQ 103 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHH
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHH
Confidence 34444443 36799999999999999999999988753 2222 444455667778899999999999887665544
Q ss_pred ccc---------cccEEEEEEECCCcccHHHHH-HH---HHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 81 YFQ---------NTQGLIFVVDSNDRDRVVEAR-DE---LHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 81 ~~~---------~~d~~i~v~d~~~~~s~~~~~-~~---~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
+++ .+|++++|++++... +.... .+ +...... ....|+++|+||+|+.+
T Consensus 104 ~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 104 ALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK--EIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG--GGGGGEEEEEECTTCCC
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch--hhhcCEEEEEeCcccCC
Confidence 443 789999999987643 32222 22 3322221 01248999999999864
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=4.3e-20 Score=154.07 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=107.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC-------ccc--------ccC----ccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------IVT--------TIP----TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~--------~~~----~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (181)
+..++|+++|++++|||||+++|.+.. +.. ..+ |.......+...+..+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999998631 000 011 2222233456677899999999999998
Q ss_pred cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCccc
Q 030192 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~ 149 (181)
.....+++.+|++|+|+|+++....+ ..+++..... .++| +|+++||+|+.+... . +++.+.+....+.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888899999999999998754332 2333332222 3577 899999999975211 1 1222222111122
Q ss_pred CcceEEEEccccCC--------CChHHHHHHHHHHhh
Q 030192 150 QRHWYIQSTCATSG--------EGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~S~~~~--------~gv~~~~~~i~~~~~ 178 (181)
...++++++||++| .|++++++.+.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23468999999999 468899988877553
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=4.3e-19 Score=143.54 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=85.6
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcc--------------c-------ccCccceeEEEEEECCEEEEEEEcCCC
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (181)
..++..+|+++|+.|+|||||++++.+.... . ...+.......+....+.+++|||||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 3456789999999999999999999843211 0 011333344556678899999999999
Q ss_pred CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
.++...+..+++.+|++++|+|+++....+ ...++..... .++|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 999988899999999999999987654433 2344444433 378999999999987
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.81 E-value=1.7e-19 Score=134.09 Aligned_cols=160 Identities=17% Similarity=0.178 Sum_probs=97.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-c------ccCccceeEE---------------------------------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T------TIPTIGFNVE--------------------------------- 54 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~------~~~~~~~~~~--------------------------------- 54 (181)
....+|+++|++|+|||||+|++.+..+. . ..|+.-....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 35679999999999999999999988752 1 1110000000
Q ss_pred --------------------E---EEECCEEEEEEEcCCCCC-------------cccchhhccccccEEEEEEECCCcc
Q 030192 55 --------------------T---VEYKNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 55 --------------------~---~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
. .......+.+|||||..+ +......+++.+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0 111346799999999753 3445667788999999999975332
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccC---CCChHHHHHHHH
Q 030192 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS---GEGLYEGLDWLS 174 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~gv~~~~~~i~ 174 (181)
........+...+.. .+.|+++|+||+|+.+... ..+..+. ........-+++..+|+.+ +.|+++++..+.
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTG-RVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTT-SSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhC-CCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 111111123333333 4789999999999876543 1222221 0111111123455566666 889999999887
Q ss_pred HHhh
Q 030192 175 NNIA 178 (181)
Q Consensus 175 ~~~~ 178 (181)
..+.
T Consensus 258 ~~~~ 261 (315)
T 1jwy_B 258 LYFK 261 (315)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
No 179
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.81 E-value=3.3e-20 Score=141.09 Aligned_cols=132 Identities=27% Similarity=0.381 Sum_probs=103.8
Q ss_pred ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 030192 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|+|+....+...++.+++|||+|+++++..|..++++++++|+|||+++ ..++.+...|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5667777788889999999999999999999999999999999999998 889999999999998876567
Q ss_pred CCeEEEEEeCCCCCCCCC--------------------------------HhHHHhhhCCCcc--------cCcceEEEE
Q 030192 118 DAVLLVFANKQDLPNAMN--------------------------------AAEITDKLGLHSL--------RQRHWYIQS 157 (181)
Q Consensus 118 ~~piivv~nK~Dl~~~~~--------------------------------~~~~~~~~~~~~~--------~~~~~~~~~ 157 (181)
++|++|++||+|+..... .++........+. ....+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 899999999999843110 0111111000000 113567889
Q ss_pred ccccCCCChHHHHHHHHHHhhh
Q 030192 158 TCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
|||+++.||+++|..+.+.+..
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887754
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.81 E-value=1.1e-18 Score=141.69 Aligned_cols=116 Identities=20% Similarity=0.152 Sum_probs=88.1
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhc--CCcc------------c-------ccCccceeEEEEEECCEEEEEEEcCCC
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKL--GEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~------------~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (181)
..++..+|+++|++|+|||||+++|+. ..+. . ...|.......+...+..+++|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 346678999999999999999999984 2211 0 112333445567778899999999999
Q ss_pred CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
.++...+..+++.+|++++|+|+++..+.+.... |..... .++|+++++||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCcccc
Confidence 9999999999999999999999998766655443 333333 37899999999999764
No 181
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1.8e-19 Score=126.41 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=97.8
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECCEEEEEEEcCCCCC----------cccch
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLW 78 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~----------~~~~~ 78 (181)
+......+|+++|++|||||||++++.+..+. ...|+.+... ..+...+ .+.+||+||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 55577889999999999999999999987732 2334444322 1222222 578999999743 22222
Q ss_pred hhcc---ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcccCc
Q 030192 79 RHYF---QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQR 151 (181)
Q Consensus 79 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~ 151 (181)
..++ ..++++++|+|++.+.+.... .+..++.. .+.|+++++||+|+.+... ...+...+... ..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~---~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF---NG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG---CS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc---CC
Confidence 3333 468999999999876654321 11222222 4688999999999865321 11222222111 12
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 152 HWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 152 ~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
.+.++++|++++.|++++++.+.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3578899999999999999999887643
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.80 E-value=8.5e-20 Score=148.18 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=105.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc--ccCccc-eeEE--------EEE--------------------------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-FNVE--------TVE-------------------------- 57 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~-~~~~--------~~~-------------------------- 57 (181)
...++|+++|++|+|||||+|+|++..... ..|++. .... ...
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 578999999999999999999999877432 233321 0000 010
Q ss_pred --------------------ECC----EEEEEEEcCCCCC---cccchhhccccccEEEEEEECCCcccHHHHHHHHHHH
Q 030192 58 --------------------YKN----ISFTVWDVGGQDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110 (181)
Q Consensus 58 --------------------~~~----~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 110 (181)
... ..+.+|||||... .......+++++|++++|+|++++.+......+ ...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l-~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL-ENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH-HHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH-HHH
Confidence 000 3589999999543 345566788899999999999887776555433 333
Q ss_pred HcCCCCCCCeEEEEEeCCCCCCCC-----CHhH-------HHhh----hCCCccc-----CcceEEEEcccc--------
Q 030192 111 LNEDELRDAVLLVFANKQDLPNAM-----NAAE-------ITDK----LGLHSLR-----QRHWYIQSTCAT-------- 161 (181)
Q Consensus 111 ~~~~~~~~~piivv~nK~Dl~~~~-----~~~~-------~~~~----~~~~~~~-----~~~~~~~~~S~~-------- 161 (181)
+.. .+.|+++|+||+|+.... ..++ +.+. +. .... ....+++++||+
T Consensus 226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~-~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLA-EYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHG-GGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHH-HhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 332 367899999999986432 1111 1111 11 1111 123468899999
Q ss_pred ------CCCChHHHHHHHHHHhh
Q 030192 162 ------SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ------~~~gv~~~~~~i~~~~~ 178 (181)
++.|+++++..+.+.+.
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988664
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.79 E-value=4.2e-18 Score=138.43 Aligned_cols=115 Identities=16% Similarity=0.045 Sum_probs=85.2
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC--cc------------c-------ccCccceeEEEEEECC-------EEEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV------------T-------TIPTIGFNVETVEYKN-------ISFTV 65 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~------------~-------~~~~~~~~~~~~~~~~-------~~~~i 65 (181)
.++..+|+++|+.|+|||||+++|+... +. . ...|.......+.+.+ +.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3567899999999999999999997431 11 0 1123333334455555 89999
Q ss_pred EEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
|||||+.+|...+..+++.+|++++|+|+++....+.. ..|..... .++|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 99999999999999999999999999999876554433 33433332 47899999999998653
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=1.7e-18 Score=126.24 Aligned_cols=118 Identities=11% Similarity=0.060 Sum_probs=79.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc--cC--ccceeEEEEEECCEEEEEEEcCCCCCcccchh-------hc--
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR-------HY-- 81 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~-- 81 (181)
...++|+++|.+|+|||||+|++.+..+... .+ +.......+...+..+.+|||||..++..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 3578999999999999999999998875322 12 22333445667889999999999876653322 11
Q ss_pred cccccEEEEEEECCCcccHHHHH-HHHHHHHcCCC-CCCCeEEEEEeCCCCCCC
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDE-LRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~piivv~nK~Dl~~~ 133 (181)
.+.+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+..+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2469999999998653 333332 33333322111 012699999999998754
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=2.5e-18 Score=131.71 Aligned_cols=156 Identities=22% Similarity=0.224 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-EEEEEEEcCCCCCc----ccchh---hcccccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPLWR---HYFQNTQ 86 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~----~~~~~---~~~~~~d 86 (181)
-.|+++|++|||||||++++.+.... .. ..|.......+...+ ..+.+||+||..+. ..+.. .....++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 46899999999999999999887532 11 223333444455554 78999999997432 11222 2235699
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
.++.|+|++ .+.+.....++.+..... .....|.++++||+|+......+++.+.+ +..+++++.+||+++.|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccC
Confidence 999999998 556666655555443321 11357899999999987642222333322 12345688999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030192 166 LYEGLDWLSNNIAS 179 (181)
Q Consensus 166 v~~~~~~i~~~~~~ 179 (181)
++++++.+.+.+.+
T Consensus 312 i~eL~~~i~~~l~~ 325 (416)
T 1udx_A 312 LPALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=9.4e-19 Score=132.46 Aligned_cols=150 Identities=16% Similarity=0.182 Sum_probs=93.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccc-cC--ccce-----------------------------------------
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGF----------------------------------------- 51 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~----------------------------------------- 51 (181)
.-.+|+++|++|||||||+|++.+..+... .. |...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 344999999999999999999999765211 00 0000
Q ss_pred -----------e--EEEEEE-CCEEEEEEEcCCCCCc-------------ccchhhccccccEEEEEEECCCcccHHHHH
Q 030192 52 -----------N--VETVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR 104 (181)
Q Consensus 52 -----------~--~~~~~~-~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 104 (181)
. ...+.. ....+.+|||||..++ ......+++++|++++|+|.++.+.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~- 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD- 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-
Confidence 0 001111 2456899999997765 55677888999999999987654433211
Q ss_pred HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 105 DELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 105 ~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
+..++......+.|+++|+||+|+.+... ..+..+. .....+..|+++|+..+.++++.+..
T Consensus 192 --~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 --AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp --HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred --HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCH
Confidence 12222222225789999999999876432 2222221 12233456778999988877765444
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.75 E-value=3.3e-18 Score=129.12 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=94.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-------cccCcc--------------------------------------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI-------------------------------------- 49 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-------~~~~~~-------------------------------------- 49 (181)
....+|+++|.+|+|||||+|+|.+..+. +..|+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999987753 111220
Q ss_pred -----cee----EEEEEE-CCEEEEEEEcCCCCC-------------cccchhhccccccEEE-EEEECCCcccHHHHHH
Q 030192 50 -----GFN----VETVEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD 105 (181)
Q Consensus 50 -----~~~----~~~~~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 105 (181)
++. ...+.. ....+.+|||||..+ +......++.+++.++ +|.|++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 000 011122 246799999999532 3345556666655555 4666654222122222
Q ss_pred HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcc-eEEEEccccCCCChHHHHHHHHH
Q 030192 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
+...+.. .+.|+++|+||+|+.+... ..++.+ ........+ ..++++||+++.|++++++.+.+
T Consensus 189 -i~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 -VAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp -HHHHHCT---TCTTEEEEEECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred -HHHHhCc---CCCceEEEeccccccCcchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2233332 4789999999999876432 222222 111111223 36889999999999999988865
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.75 E-value=4.8e-17 Score=128.79 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=86.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC------------------cccc-------cCccceeEEEEEECCEEEEEEEcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------------IVTT-------IPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~------------------~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.+..+|+|+|+.++|||||.++++... .... .-|+......+.+.++.++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 366899999999999999999996311 1111 114444456788899999999999
Q ss_pred CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
|+.+|.......++-+|++|+|+|+...-..+. ...|..... .++|+++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhc
Confidence 999999999999999999999999976544433 334455544 48999999999998653
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=1.5e-18 Score=128.27 Aligned_cols=159 Identities=14% Similarity=0.193 Sum_probs=77.1
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcC-Cccccc---------CccceeEEEE----EECCEEEEEEEcCCC-------C
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLG-EIVTTI---------PTIGFNVETV----EYKNISFTVWDVGGQ-------D 72 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~-~~~~~~---------~~~~~~~~~~----~~~~~~~~i~D~~g~-------~ 72 (181)
..-.++|+++|++|+|||||++++.+. .++... ++.......+ ......+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 356689999999999999999998765 332211 2222221111 123568999999997 4
Q ss_pred Ccccchh-------hcccc-------------ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 73 KIRPLWR-------HYFQN-------------TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
.+..... .+++. +++++++.+.+. .++......+...+. .+.|+++|+||.|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCCC
Confidence 5554443 34333 233555555432 122222222222222 3578999999999875
Q ss_pred CCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
..+.....+. ....++..+++++++||+++ |++++|..+.+.+.+
T Consensus 170 ~~e~~~~~~~-~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKR-ILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHH-HHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHH-HHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 3222111111 11122334557889999999 999999999987754
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.72 E-value=8e-18 Score=127.10 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=94.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC------Cc--ccccCccc---------------------eeEEE----------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIG---------------------FNVET---------- 55 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~------~~--~~~~~~~~---------------------~~~~~---------- 55 (181)
.+...|+++|.+|+|||||+++|... +. ....|... .....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 46789999999999999999999532 10 01111000 00000
Q ss_pred ----------EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030192 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 56 ----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+...++.+.++||||.... .......+|++++|+|....+..+... ......|+++|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVl 224 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVV 224 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEE
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEE
Confidence 0124678999999995332 233457899999999987654432221 111346899999
Q ss_pred eCCCCCCCCCHh----HHHhhhCCC--cccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 126 NKQDLPNAMNAA----EITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 126 nK~Dl~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
||+|+.+..... ++...+... ....++.+++++||++|.|++++++.+.+.+.
T Consensus 225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 999986532222 222222111 01123457899999999999999999988764
No 191
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=113.60 Aligned_cols=173 Identities=21% Similarity=0.333 Sum_probs=115.8
Q ss_pred HHHHHhhhcccccEEEEEcCC-CCChHHHHhhHhcCCccc---ccC-----cc--ceeE-----EEEEE-----------
Q 030192 6 TKLFSRLFAKKEMRILMVGLD-AAGKTTILYKLKLGEIVT---TIP-----TI--GFNV-----ETVEY----------- 58 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~i~G~~-~~GKSsli~~l~~~~~~~---~~~-----~~--~~~~-----~~~~~----------- 58 (181)
+.++.++......+++++||. ..=+.+|+.+++...-.. ..+ .+ |+.+ +.++.
T Consensus 5 ~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er 84 (227)
T 3l82_B 5 TSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKER 84 (227)
T ss_dssp CCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-----
T ss_pred HHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHh
Confidence 345677778889999999982 445568999998755111 111 11 1111 01110
Q ss_pred -----CC----EEEEEEEcC------CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHH---HHHHcCCC-CCCC
Q 030192 59 -----KN----ISFTVWDVG------GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDE-LRDA 119 (181)
Q Consensus 59 -----~~----~~~~i~D~~------g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~ 119 (181)
++ -++-...+| |+...+..|.+|++++|++|||+|+++.+.+. ....+ ..++.+.. ..+.
T Consensus 85 ~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~ga 163 (227)
T 3l82_B 85 DRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGR 163 (227)
T ss_dssp --------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCS
T ss_pred hhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCC
Confidence 00 012222333 78889999999999999999999999876654 44434 34444432 3689
Q ss_pred eEEEEEeCC-CCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192 120 VLLVFANKQ-DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 120 piivv~nK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
|++|++||. |+.......++.+.+++..+ ...|.+..|||++|+|+.+.++|+.+.+..|
T Consensus 164 pLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 164 PLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp CEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred eEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 999999995 78888889999999998877 4799999999999999999999999988765
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.71 E-value=3.1e-17 Score=115.96 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=95.7
Q ss_pred HHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcc-------cccCcc----------ceeEEEEE--------------
Q 030192 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI----------GFNVETVE-------------- 57 (181)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-------~~~~~~----------~~~~~~~~-------------- 57 (181)
.......+..+|+++|.+|+|||||+++|.+.... ...+.. +.....+.
T Consensus 22 ~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (221)
T 2wsm_A 22 REALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYH 101 (221)
T ss_dssp HHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHT
T ss_pred HHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHH
Confidence 33444457789999999999999999999764210 011110 11111111
Q ss_pred ----ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 58 ----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 58 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
..+..+.+|||+|+.... ..+....+.+++|+|+....... .. +... .+.|+++++||+|+.+.
T Consensus 102 ~~~~~~~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~~--~~-~~~~------~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 102 RLKKFSDCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDVV--EK-HPEI------FRVADLIVINKVALAEA 169 (221)
T ss_dssp TGGGGTTCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTHH--HH-CHHH------HHTCSEEEEECGGGHHH
T ss_pred HHHhcCCCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchhh--hh-hhhh------hhcCCEEEEecccCCcc
Confidence 134678999999952111 11113578899999987653221 11 1111 24788999999998643
Q ss_pred --CCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 134 --MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
...+++...+... ...++++++|+++|.|++++++++.+.+.+
T Consensus 170 ~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 170 VGADVEKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HTCCHHHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 2344443333110 124578999999999999999999887654
No 193
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=1.8e-17 Score=122.53 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=99.0
Q ss_pred HHHhhHhcCCcc--cccCccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc-cHHHHHHHH
Q 030192 32 TILYKLKLGEIV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDEL 107 (181)
Q Consensus 32 sli~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~ 107 (181)
+|+.++..+.|. .+.||++..+. +.. .+..+.+||+ ++++..++..+++++|++++|||+++++ ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888875 35788885543 322 2237999999 9999999999999999999999999987 677777776
Q ss_pred HHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192 108 HRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 108 ~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
..... .++|+++|+||+|+.+... .+++...+.. . ++++++||++|.|++++|..+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 65433 4799999999999976432 2233333321 1 46899999999999999987643
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.70 E-value=2.4e-17 Score=130.66 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=81.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc----cccCccceeEEEEEEC------------------------C------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYK------------------------N------ 60 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~------------------------~------ 60 (181)
....+|+++|.+|+|||||+|+|++..+. ...|++.......... +
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998753 2233221111000000 0
Q ss_pred -----------EEEEEEEcCCCCC-----------cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC
Q 030192 61 -----------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (181)
Q Consensus 61 -----------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (181)
..+.+|||||... +......++..+|++++|+|+++.........++..+ .. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-RG---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-TT---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-Hh---cC
Confidence 3589999999764 3455666778999999999998754444444444333 32 46
Q ss_pred CeEEEEEeCCCCCCCCCHhHH
Q 030192 119 AVLLVFANKQDLPNAMNAAEI 139 (181)
Q Consensus 119 ~piivv~nK~Dl~~~~~~~~~ 139 (181)
.|+++|+||+|+.+.....++
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~ 239 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRV 239 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHH
Confidence 899999999999865444433
No 195
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=7.8e-18 Score=128.57 Aligned_cols=80 Identities=30% Similarity=0.350 Sum_probs=47.2
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEE--E-------------------EC---CEEEEEEEcCC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETV--E-------------------YK---NISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~--~-------------------~~---~~~~~i~D~~g 70 (181)
++|+++|.+|+|||||+|++.+.... +..| |...+.... . .. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 2222 222222211 1 11 36899999999
Q ss_pred CCC----cccc---hhhccccccEEEEEEECCCc
Q 030192 71 QDK----IRPL---WRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 71 ~~~----~~~~---~~~~~~~~d~~i~v~d~~~~ 97 (181)
..+ ...+ ...+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 2222 22456899999999999875
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=120.01 Aligned_cols=150 Identities=17% Similarity=0.110 Sum_probs=87.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC------c--ccccCccc--------------------eeEE-------E-----
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE------I--VTTIPTIG--------------------FNVE-------T----- 55 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~------~--~~~~~~~~--------------------~~~~-------~----- 55 (181)
....|+++|+||||||||+|++.+.. . ....|+.. ..+. .
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 36899999999999999999998521 0 01111100 0000 0
Q ss_pred ---------EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030192 56 ---------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 56 ---------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
+...+..+.++||+|-... .......+|++++|+|++.++..+.... .+ ...|.++|+|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN 220 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT 220 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence 0124578899999995322 2334578999999999976533221111 11 2457899999
Q ss_pred CCCCCCCCC----HhHHHhhhCCCcc--cCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 127 KQDLPNAMN----AAEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 127 K~Dl~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
|+|+.+... ..++...+..... ..+..+++.+|+++|.|++++++++.+.+
T Consensus 221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 999864211 1123222221110 11234788999999999999999998765
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=1.2e-16 Score=132.13 Aligned_cols=113 Identities=17% Similarity=0.097 Sum_probs=85.5
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC------------ccc-------ccCccceeEEEEEEC---------------
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IVT-------TIPTIGFNVETVEYK--------------- 59 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~~-------~~~~~~~~~~~~~~~--------------- 59 (181)
.++..+|+++|++|+|||||+++|+... +.. ...|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3566899999999999999999997641 110 011333333333332
Q ss_pred -CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 60 -NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 -~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
++.+++|||||+.+|...+..+++.+|++++|+|+++..+.+....|. .... .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcc
Confidence 688999999999999999999999999999999999887776654443 3333 478999999999986
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=124.36 Aligned_cols=158 Identities=14% Similarity=0.178 Sum_probs=73.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cc--------cCccceeEEEE--E--ECCEEEEEEEcCCCCCcc------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--------IPTIGFNVETV--E--YKNISFTVWDVGGQDKIR------ 75 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~--------~~~~~~~~~~~--~--~~~~~~~i~D~~g~~~~~------ 75 (181)
.-.++|+++|++|+|||||++.+.+..+. .. .++.......+ . .....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 45678999999999999999999987653 11 12222221111 1 123578999999975431
Q ss_pred -c------------------chhhccccccEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030192 76 -P------------------LWRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 76 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 135 (181)
. +...++..+++.+++|..... .++......+...+. .+.|+|+|+||+|+.....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 1 112234455544444444322 334344333333333 3689999999999875432
Q ss_pred HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
...+.... ...+...+++++++|++++.++++++..+...+
T Consensus 185 v~~~k~~i-~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 CQQFKKQI-MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHH-HHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHH-HHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 22221111 112223345678999999999999888776543
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.64 E-value=1.3e-16 Score=128.63 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=109.8
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcC--Cc------------cccc-------CccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLG--EI------------VTTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~--~~------------~~~~-------~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (181)
-.||+|+|+.++|||||.++|+.. .+ .... -|+......+.+.++.++++|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 468999999999999999999631 11 0111 13333344567788999999999999999
Q ss_pred cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCc-----
Q 030192 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS----- 147 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~----- 147 (181)
......++-+|++|+|+|+...-..+ ....|..... .++|.++++||+|...... .+++.+.+....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 99999999999999999997643322 2344444444 3788999999999765432 223333222110
Q ss_pred ---------------------------------------------------ccCcceEEEEccccCCCChHHHHHHHHHH
Q 030192 148 ---------------------------------------------------LRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 148 ---------------------------------------------------~~~~~~~~~~~S~~~~~gv~~~~~~i~~~ 176 (181)
....-.|++..||+++.|++.+++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 00112467788999999999999999876
Q ss_pred hh
Q 030192 177 IA 178 (181)
Q Consensus 177 ~~ 178 (181)
+.
T Consensus 237 ~p 238 (638)
T 3j25_A 237 FY 238 (638)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.9e-15 Score=111.92 Aligned_cols=81 Identities=21% Similarity=0.202 Sum_probs=62.4
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCEEEEEEEcCCCCCcc-------cchhhcccccc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 86 (181)
..+|+++|.||+|||||+|+|++.... .. ..|.......+...+.+++++||||--+.. .......+.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 358999999999999999999987643 22 346666777788899999999999943211 12334557899
Q ss_pred EEEEEEECCCc
Q 030192 87 GLIFVVDSNDR 97 (181)
Q Consensus 87 ~~i~v~d~~~~ 97 (181)
++++|+|+++|
T Consensus 152 ~il~vvD~~~p 162 (376)
T 4a9a_A 152 LLFIILDVNKP 162 (376)
T ss_dssp EEEEEEETTSH
T ss_pred ccccccccCcc
Confidence 99999999876
No 201
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.62 E-value=3.9e-15 Score=120.91 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=96.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-c-ccC-cc------------------------------------------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T-TIP-TI------------------------------------------ 49 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~-~~~-~~------------------------------------------ 49 (181)
....+|+++|.+++|||||+|++++..+. . ..+ |.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 35679999999999999999999987651 1 000 10
Q ss_pred -----c----eeEEEEEE-CCEEEEEEEcCCCCC-------------cccchhhcc-ccccEEEEEEECCCcccHHHHHH
Q 030192 50 -----G----FNVETVEY-KNISFTVWDVGGQDK-------------IRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARD 105 (181)
Q Consensus 50 -----~----~~~~~~~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~ 105 (181)
+ .....+.. ....+.++||||-.. .......++ ..+|++++|+|++..........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0 00111112 233588999999543 112233333 47899999999986533323222
Q ss_pred HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
+...+.. .+.|+++|+||+|+.+.... .++.. ......+....+++.+||++|.|++++++.+..
T Consensus 209 -ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 -IAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp -HHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred -HHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2333333 47899999999999765322 22222 111111122346889999999999999998876
No 202
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=1e-14 Score=109.59 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-ccc--CccceeEEEEEECC-----------------EEEEEEEcCCCCCcc--
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR-- 75 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~--~~~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~~-- 75 (181)
++|+++|.||+|||||+|++.+..+. ... +|.+.+...+...+ ..+.+|||||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987632 222 24343333333332 579999999987653
Q ss_pred -----cchhhccccccEEEEEEECCC
Q 030192 76 -----PLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 76 -----~~~~~~~~~~d~~i~v~d~~~ 96 (181)
.....+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 122345689999999999975
No 203
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.62 E-value=6.2e-16 Score=111.63 Aligned_cols=111 Identities=23% Similarity=0.384 Sum_probs=88.8
Q ss_pred cCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHH---HHHcCCC-CCCCeEEEEEeC-CCCCCCCCHhHHHhh
Q 030192 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH---RMLNEDE-LRDAVLLVFANK-QDLPNAMNAAEITDK 142 (181)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~piivv~nK-~Dl~~~~~~~~~~~~ 142 (181)
.+|+...+..|.+|++++|++|||+|+++.++++ ....+. .++.+.. ..+.|++|++|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 3578889999999999999999999999987754 333222 3333321 357999999996 589888889999999
Q ss_pred hCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
+++..+. ..|.+..|||++|+|+.+.++|+.+.+.+|
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 9988774 799999999999999999999999988765
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.61 E-value=5.5e-16 Score=112.23 Aligned_cols=117 Identities=12% Similarity=0.010 Sum_probs=68.7
Q ss_pred EEEEEEEcCCCCCcccchh------hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192 61 ISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 134 (181)
+.+.+|||||..+...... ..+.. +++++++|.....+.......+..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5799999999865433211 23455 8899999986543333322211111110011368899999999987543
Q ss_pred CHhHHHhhhCC-C----c------------------ccC--cceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 135 NAAEITDKLGL-H----S------------------LRQ--RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 135 ~~~~~~~~~~~-~----~------------------~~~--~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
..+++...+.. . . ++. ...+++++||+++.|++++++++.+.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 22222211100 0 0 011 1236789999999999999999988764
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.61 E-value=6.5e-16 Score=116.05 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=91.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcC------Cc--ccccCccc--------------------eeEE-EE--------
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIG--------------------FNVE-TV-------- 56 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~------~~--~~~~~~~~--------------------~~~~-~~-------- 56 (181)
..+...|+++|++|+||||+++.+.+. +. ....+... ..+. ..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 456789999999999999999999632 11 01111000 0000 00
Q ss_pred ------------EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030192 57 ------------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ------------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...++.+.++||||..+.... ....+|++++|+|++..+.++.... .. .+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence 024678999999997654432 4578999999999875432211100 00 14678999
Q ss_pred EeCCCCCCCCCHh----HHHhhhCC-C-cccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 125 ANKQDLPNAMNAA----EITDKLGL-H-SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 125 ~nK~Dl~~~~~~~----~~~~~~~~-~-~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
+||+|+.+..... ++...+.. . ....+..+++++||++|.|++++++.+.+.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9999987542222 22221111 1 01112347889999999999999999987653
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.60 E-value=4.5e-14 Score=115.16 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=81.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC--------------ccccc---C----ccceeEEEEEE-------CCEEEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTTI---P----TIGFNVETVEY-------KNISFTVW 66 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--------------~~~~~---~----~~~~~~~~~~~-------~~~~~~i~ 66 (181)
++..||+|+|+.++|||||.++|+... +.... . |+.....++.+ +++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 566799999999999999999996311 11100 0 22222334444 36899999
Q ss_pred EcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
|||||.+|.......++-+|++|+|+|+...-.. .....|..... .++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEccccccCc
Confidence 9999999999999999999999999999764333 23344555544 37999999999997643
No 207
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.57 E-value=7.5e-15 Score=103.96 Aligned_cols=153 Identities=17% Similarity=0.167 Sum_probs=87.6
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccce----------------eEEEEEEC---------------
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF----------------NVETVEYK--------------- 59 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~----------------~~~~~~~~--------------- 59 (181)
....+..+|+++|.+|||||||+++|....+.. ..++.+. ....+...
T Consensus 33 ~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 112 (226)
T 2hf9_A 33 LNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALE 112 (226)
T ss_dssp HHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHT
T ss_pred HHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHH
Confidence 344567899999999999999999998654321 1122111 11112200
Q ss_pred -----CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-
Q 030192 60 -----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA- 133 (181)
Q Consensus 60 -----~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~- 133 (181)
+..+.++|++|.-... ..+-...+..+.++|......... . .... .+.|.++|+||+|+.+.
T Consensus 113 ~l~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~-~~~~------~~~~~iiv~NK~Dl~~~~ 180 (226)
T 2hf9_A 113 DLNLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--K-HPGI------MKTADLIVINKIDLADAV 180 (226)
T ss_dssp TSCGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--T-CHHH------HTTCSEEEEECGGGHHHH
T ss_pred HHhcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--h-hhhH------hhcCCEEEEeccccCchh
Confidence 1146666666631111 111123455667777532211100 0 0111 13678999999998643
Q ss_pred -CCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 134 -MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
...+++...+... ..+.+++++||++|.|++++|+.+.+.+.+
T Consensus 181 ~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 181 GADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 2333333322110 123478999999999999999999988765
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.51 E-value=8.4e-14 Score=105.16 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=54.0
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-ccc--CccceeEEEEEE---------------------CCEEEEEEEcCCCCC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEY---------------------KNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~--~~~~~~~~~~~~---------------------~~~~~~i~D~~g~~~ 73 (181)
++|+++|.||+|||||+|++.+.... ... .|...+...... .+..+.+|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 58999999999999999999875421 111 122222222221 245799999999765
Q ss_pred cc-------cchhhccccccEEEEEEECCC
Q 030192 74 IR-------PLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 ~~-------~~~~~~~~~~d~~i~v~d~~~ 96 (181)
+. .....+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 123345689999999999975
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.48 E-value=6.1e-14 Score=105.08 Aligned_cols=153 Identities=13% Similarity=0.150 Sum_probs=88.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhc------CCcc--cccCc--------------cce------eEEE----------
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKL------GEIV--TTIPT--------------IGF------NVET---------- 55 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~------~~~~--~~~~~--------------~~~------~~~~---------- 55 (181)
..+...++++|++|||||||++.+.+ +... ...++ ++. .+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35677899999999999999999973 2210 10110 000 0000
Q ss_pred -----------EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030192 56 -----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 56 -----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
+...+..+.++||+|..+-. ......+|.+++|+|....+..+...... ...|.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 11256789999999964322 22346899999999986443221111111 12355778
Q ss_pred EeCCCCCCCCC-----HhHHHhhhCCCcc--cCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 125 ANKQDLPNAMN-----AAEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 125 ~nK~Dl~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
+||+|+..... .+++...+..... ..+..+++.+|++++.|++++++.+.+...
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999754211 1222222221110 011236778999999999999999887643
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.34 E-value=2.3e-12 Score=95.15 Aligned_cols=95 Identities=20% Similarity=0.183 Sum_probs=72.1
Q ss_pred CCCcccchhhccccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030192 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~ 146 (181)
++++..+...+++++|++++|+|+++++ ++..+..|+..... .++|+++|+||+|+.+... .+++..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~----- 136 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWIS----- 136 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH-----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHH-----
Confidence 7788888888999999999999999886 78777777664433 5799999999999976421 122221
Q ss_pred cccCcceEEEEccccCCCChHHHHHHHH
Q 030192 147 SLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
.++..+++++++||++|.|+++++..+.
T Consensus 137 ~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 137 IYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 2222355799999999999999998764
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.28 E-value=3.2e-12 Score=97.06 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=51.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-ccc--CccceeEEEEEEC-----------------CEEEEEEEcCCCCCc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~--~~~~~~~~~~~~~-----------------~~~~~i~D~~g~~~~ 74 (181)
...++|+++|.+|+|||||+|++.+.... ... .|...+...+... ...+.+||+||..++
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999987642 122 2333334444332 345999999997654
Q ss_pred cc-------chhhccccccEEEEEEECCCcc
Q 030192 75 RP-------LWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 75 ~~-------~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
.. .+..+++++|++++|+|+++.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 43 4566778999999999997543
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.05 E-value=5.3e-11 Score=90.16 Aligned_cols=113 Identities=8% Similarity=0.122 Sum_probs=67.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC-----Ccc--cccCccceeEEEEEECCEEEEEEEcCCCCCccc--------chhh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG-----EIV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRH 80 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~ 80 (181)
+..+++++|.+|+|||||+|++.+. ... +..|........+... ..+.++||||-..... ....
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 3568999999999999999999876 211 2233322223333322 2379999999532211 1121
Q ss_pred cc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192 81 YF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 81 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 134 (181)
++ +..+.++++++....--+..... .+.+. ..+.|+++++||.|..+..
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~---~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR--LDYIK---GGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE--EEEEE---SSSEEEEEEECTTSCEEEE
T ss_pred HhcccccCceEEEEcCCceEEECCEEE--EEEcc---CCCceEEEEecCCcccccc
Confidence 21 56899999999832100000000 11222 2468999999999987543
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.04 E-value=1.8e-09 Score=84.61 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=87.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHh------cCCcc--cc---cCc-----------cceeEEEE-----------------
Q 030192 16 KEMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IPT-----------IGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~------~~~~~--~~---~~~-----------~~~~~~~~----------------- 56 (181)
+...|+++|.+||||||++++|. +.+.. +. .+. .++.+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997 43321 10 110 01111110
Q ss_pred EECCEEEEEEEcCCCCCccc-chh---hc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCC
Q 030192 57 EYKNISFTVWDVGGQDKIRP-LWR---HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQD 129 (181)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D 129 (181)
...++.+.++||||...... ... .. ...+|.+++|+|+............+.. ..|+ ++|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCCc
Confidence 11567899999999764321 111 11 1268999999999765432222222211 1454 89999999
Q ss_pred CCCCCC-HhHHHhhhCCCcc-----cC-cc----eEEEEccccCCCC-hHHHHHHHHHH
Q 030192 130 LPNAMN-AAEITDKLGLHSL-----RQ-RH----WYIQSTCATSGEG-LYEGLDWLSNN 176 (181)
Q Consensus 130 l~~~~~-~~~~~~~~~~~~~-----~~-~~----~~~~~~S~~~~~g-v~~~~~~i~~~ 176 (181)
...... ...+....+.+.. +. .+ .+...+|+..|.| ++++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 874332 2234444443320 00 00 1223579999999 99999988754
No 214
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=1.1e-09 Score=83.32 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=57.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc-c-cccC--ccceeEEEEEECC-----------------EEEEEEEcCCCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~-~~~~--~~~~~~~~~~~~~-----------------~~~~i~D~~g~~~ 73 (181)
....+++++|++|+|||||+|.+.+... . ...| |...+...+...+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4567999999999999999999998654 1 2233 3334444444433 4689999999432
Q ss_pred -------cccchhhccccccEEEEEEECCC
Q 030192 74 -------IRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 -------~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
....+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23334556688999999999863
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=1.1e-09 Score=83.94 Aligned_cols=119 Identities=15% Similarity=0.189 Sum_probs=63.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc-----cCccceeEEEE--EECC--EEEEEEEcCCCCCcc----------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV--EYKN--ISFTVWDVGGQDKIR---------- 75 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~--~~~~--~~~~i~D~~g~~~~~---------- 75 (181)
...++++++|++|+|||||++.+.+..+... .+........+ +... ..+.++|++|-....
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 3445699999999999999999988653211 11111111111 1122 368999999853210
Q ss_pred ----cch----hhc---------ccc--ccE-EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030192 76 ----PLW----RHY---------FQN--TQG-LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 76 ----~~~----~~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 135 (181)
..+ ..+ ... .|+ ++++.|.... +......+...+. .++|+|+|.||+|...+.+
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccchHH
Confidence 011 111 111 233 4455665433 2223333333433 4789999999999776543
Q ss_pred HhHH
Q 030192 136 AAEI 139 (181)
Q Consensus 136 ~~~~ 139 (181)
...+
T Consensus 194 ~~~l 197 (427)
T 2qag_B 194 LTKF 197 (427)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.98 E-value=1.9e-10 Score=87.14 Aligned_cols=100 Identities=19% Similarity=0.145 Sum_probs=66.2
Q ss_pred CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcc
Q 030192 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSL 148 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~ 148 (181)
..++|++.+..+.+.+|++++|+|++++. ......+.+.+ .++|+++|+||+|+.+... .+++.+.+. ..+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHH-HHH
Confidence 56788899999999999999999998752 11111122221 3689999999999975432 222222110 011
Q ss_pred cCcce---EEEEccccCCCChHHHHHHHHHHh
Q 030192 149 RQRHW---YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 149 ~~~~~---~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
+..++ .++.+||++|.|++++++.+.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 12222 688999999999999999987654
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.94 E-value=5.1e-10 Score=84.75 Aligned_cols=115 Identities=8% Similarity=0.134 Sum_probs=65.1
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC------cc--cccCccceeEEEEEECCEEEEEEEcCCCCCcccc--------hh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE------IV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WR 79 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~------~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 79 (181)
...+++++|.+|+|||||+|++.+.. .. +..|........+... ..+.++||||-...... ..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 34789999999999999999998753 11 1222221222223222 23899999995322211 11
Q ss_pred hc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030192 80 HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (181)
Q Consensus 80 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 136 (181)
.+ ....+..+++++.....-..... ..+.+.. .+.|+++++||.|..+....
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~~d~l~~---~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA--RFDYVSG---GRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES---SSEEEEEEECTTSCEEEEEH
T ss_pred HhccccccCceEEEEcCCCEEEEcceE--EEEEecC---CCceEEEEecCccccccccH
Confidence 11 25678888998873210000000 0112222 46899999999998764433
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.94 E-value=3.4e-10 Score=85.79 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=67.2
Q ss_pred CCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCc
Q 030192 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHS 147 (181)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~ 147 (181)
..+++|++...++.+.++++++|+|++++.+ .....+...+ .++|+++|+||+|+.+... .+.+.+.+. ..
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~-~~ 127 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMR-RM 127 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHH-HH
Confidence 3578899999999899999999999998753 1111122222 3689999999999976432 222222110 01
Q ss_pred ccCcce---EEEEccccCCCChHHHHHHHHHHhh
Q 030192 148 LRQRHW---YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~---~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
++..+. .++.+||++|.|++++++.+.+...
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 112222 6789999999999999999876543
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.91 E-value=2.9e-09 Score=77.34 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=61.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcccc---------c-CccceeEEEE--E--ECCEEEEEEEcCCCCCcc-------
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---------I-PTIGFNVETV--E--YKNISFTVWDVGGQDKIR------- 75 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~-~~~~~~~~~~--~--~~~~~~~i~D~~g~~~~~------- 75 (181)
.++++++|++|+|||||++.+.+...+.. . ++.......+ + .-...+.++|++|-....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 37899999999999999999987432211 0 1111111111 1 112368899998732100
Q ss_pred cc-----------h----------hhccccccEEEEEEECC-CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 76 PL-----------W----------RHYFQNTQGLIFVVDSN-DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 76 ~~-----------~----------~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
.. . ......+++.++++|.. .+-. .....+...+.. . .++|+|.+|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~--~lD~~~l~~L~~---~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLR--PLDLEFMKHLSK---V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCC--HHHHHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCC--HHHHHHHHHHHh---c-CcEEEEEeccccCCH
Confidence 00 0 00112368888889854 2222 222333333333 3 899999999997754
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.89 E-value=1.2e-08 Score=78.16 Aligned_cols=158 Identities=12% Similarity=0.146 Sum_probs=84.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccccc------CccceeEEEEEECCE-EEEEEEcCCCCCcccchhhc-----c
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI------PTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHY-----F 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~~~-----~ 82 (181)
.....++++|++|+|||||+|.+.+-..+... +........++.... .+.++|++|..........+ +
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 35568999999999999999999884332111 000000111122222 57899999843211111111 2
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhhhCCCc---ccC
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP---------NAMNAAEITDKLGLHS---LRQ 150 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~---------~~~~~~~~~~~~~~~~---~~~ 150 (181)
...+..++ ++.... +.....+...+.. .++|+++|.||.|+. ++...+++.+.+.... ++.
T Consensus 147 ~~~~~~~~-lS~G~~---~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRF---KKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCC---CHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCc---cHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33455554 666421 1222223333332 368999999999863 2223333322221110 000
Q ss_pred ---cceEEEEccc--cCCCChHHHHHHHHHHhhh
Q 030192 151 ---RHWYIQSTCA--TSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 151 ---~~~~~~~~S~--~~~~gv~~~~~~i~~~~~~ 179 (181)
....++.+|+ ..+.|++++.+.+.+.+.+
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1124677899 5566799999999877643
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.84 E-value=2.6e-09 Score=78.00 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=67.2
Q ss_pred EEEcCCCC-CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030192 65 VWDVGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 65 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 143 (181)
+-..||+. ...+.....+.++|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 33468875 455566677889999999999988766532 1122222 368999999999998743333333333
Q ss_pred CCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 144 ~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
. ..+.+++.+||+++.|++++++.+.+.+.
T Consensus 76 ~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 E-----NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp H-----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred H-----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 1 22346888999999999999998877654
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.73 E-value=9.1e-09 Score=75.15 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=36.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee--EEEEEECCEEEEEEEcCCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~ 72 (181)
.+.++++++|.||+|||||+|++.+.......+..+.+ ...+.. +..+.++||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 46689999999999999999999987644332222221 112222 3368999999953
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.71 E-value=4.2e-09 Score=76.15 Aligned_cols=55 Identities=25% Similarity=0.293 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEECCEEEEEEEcCCCCC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~ 73 (181)
++++++|.+|+|||||+|++.+.......++.+.+. ..+. -+..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS-LENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE-CTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE-eCCCEEEEECCCccc
Confidence 699999999999999999999877644433333221 1122 234689999999643
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.55 E-value=3.5e-07 Score=70.51 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=63.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc------CCcc--c---ccC-----------ccceeEEEE-----------------
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL------GEIV--T---TIP-----------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~------~~~~--~---~~~-----------~~~~~~~~~----------------- 56 (181)
+...|+++|++|+||||++..+.. .+.. . ..+ ..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999853 2110 0 001 111111110
Q ss_pred EECCEEEEEEEcCCCCCcccchh------hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192 57 EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 130 (181)
...++.+.++||+|......... .....+|.+++|+|++...........+.+ . -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~---~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE---A----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH---S----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh---h----CCCeEEEEECCCC
Confidence 01347899999999654322111 111358999999999764333232222222 1 2346799999998
Q ss_pred CC
Q 030192 131 PN 132 (181)
Q Consensus 131 ~~ 132 (181)
..
T Consensus 252 ~~ 253 (443)
T 3dm5_A 252 SA 253 (443)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.44 E-value=2.5e-07 Score=73.74 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=41.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc-cc-----cCccceeEEEEE---ECCEEEEEEEcCCCCC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TT-----IPTIGFNVETVE---YKNISFTVWDVGGQDK 73 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~-----~~~~~~~~~~~~---~~~~~~~i~D~~g~~~ 73 (181)
......|+|+|.||+|||||+|++.+.... .. ..|.+....... ..+..+.++||||-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456789999999999999999999987632 21 123333222221 2467899999999543
No 226
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.41 E-value=2.5e-07 Score=74.40 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..++++|++|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998764
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.33 E-value=4.6e-07 Score=69.89 Aligned_cols=108 Identities=21% Similarity=0.217 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcC------Ccc--ccc--------------------------Cccc---eeEEEE-EE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLG------EIV--TTI--------------------------PTIG---FNVETV-EY 58 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~------~~~--~~~--------------------------~~~~---~~~~~~-~~ 58 (181)
...|+++|++|+||||+++.+... +.. ... .+.. .....+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999652 110 000 0000 000000 01
Q ss_pred CCEEEEEEEcCCCCCcccchh------hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCC-e-EEEEEeCCCC
Q 030192 59 KNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-V-LLVFANKQDL 130 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-iivv~nK~Dl 130 (181)
.++.+.++||||......... .....+|.+++|+|+..... ...... .+. ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~-~~~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAK-AFK----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHH-HHH----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHH-HHh----hcccCCeEEEEeCCCC
Confidence 467899999999765321111 11236999999999865432 222222 222 124 4 7899999998
Q ss_pred CC
Q 030192 131 PN 132 (181)
Q Consensus 131 ~~ 132 (181)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.26 E-value=3.8e-07 Score=67.22 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=58.0
Q ss_pred hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcccCcceE
Q 030192 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWY 154 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~ 154 (181)
.....++|.+++|+|+.+|..-......+...... .++|.++|+||+|+.+... .+++...+ +..+.+
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g~~ 152 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIGYD 152 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHTCC
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCCCe
Confidence 34568999999999998765543444444433333 5789999999999987532 23333332 223446
Q ss_pred EEEccccCCCChHHHHHH
Q 030192 155 IQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 155 ~~~~S~~~~~gv~~~~~~ 172 (181)
++.+|+.++.|+++++..
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 888999999998876653
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.18 E-value=2.1e-07 Score=67.25 Aligned_cols=92 Identities=9% Similarity=0.009 Sum_probs=58.3
Q ss_pred cCCCC-CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030192 68 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (181)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 146 (181)
.||+. ...+.....+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+.+...+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 46764 33345566778999999999998775543210 11 1 1 789999999999987533333333221
Q ss_pred cccCcceEEEEccccCCCChHHHHHHHH
Q 030192 147 SLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
..+.++ .+|++++.|+++++..+.
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHH
Confidence 223356 899999999999887654
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.11 E-value=1.1e-05 Score=62.18 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc------CCcc--c---cc-----------CccceeEEEE-----------------E
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---TI-----------PTIGFNVETV-----------------E 57 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~------~~~~--~---~~-----------~~~~~~~~~~-----------------~ 57 (181)
...|+++|++|+||||++..+.. .+.. . .. ...+...... .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999852 1110 0 00 0111111110 0
Q ss_pred ECCEEEEEEEcCCCCC--ccc----chhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192 58 YKNISFTVWDVGGQDK--IRP----LWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 58 ~~~~~~~i~D~~g~~~--~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
..++.+.++||||... ... ..... .-+.+.+++|+|+............+.+.+ .+..+|+||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-------~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-------PIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-------SSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-------CCcEEEEeccc
Confidence 1357899999999654 111 11111 124699999999976443333333333321 34688999999
Q ss_pred CCC
Q 030192 130 LPN 132 (181)
Q Consensus 130 l~~ 132 (181)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 763
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.06 E-value=3.6e-06 Score=61.82 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=62.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc------CCcc--c---ccC-----------ccceeEEE-----------------EE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---TIP-----------TIGFNVET-----------------VE 57 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~------~~~~--~---~~~-----------~~~~~~~~-----------------~~ 57 (181)
...++++|++|+||||++..+.. .+.. . ..+ ..++.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 44788999999999999999852 2210 0 001 00111100 01
Q ss_pred ECCEEEEEEEcCCCCC--ccc-chh-----hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCC
Q 030192 58 YKNISFTVWDVGGQDK--IRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (181)
Q Consensus 58 ~~~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~ 128 (181)
..++.+.++||||... ... ... .....+|.+++|+|+..... .......+.. ..| ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1567899999999876 322 111 12346999999999864322 2222222211 234 67889999
Q ss_pred CCCC
Q 030192 129 DLPN 132 (181)
Q Consensus 129 Dl~~ 132 (181)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.96 E-value=4.1e-07 Score=71.05 Aligned_cols=94 Identities=27% Similarity=0.280 Sum_probs=53.8
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEE----EECCEEEEEEEcCCCCC--cccch--------
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV----EYKNISFTVWDVGGQDK--IRPLW-------- 78 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~D~~g~~~--~~~~~-------- 78 (181)
.......|+++|.+||||||+.++|...-.....++..+....+ ........+||..|.+. .+..+
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999997543211122221110000 01113346788888632 23222
Q ss_pred hhccccccEEEEEEECCCcccHHHHHHHH
Q 030192 79 RHYFQNTQGLIFVVDSNDRDRVVEARDEL 107 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 107 (181)
..++...++.++|+|.++. +......|+
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~ 142 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIF 142 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHH
Confidence 4555667899999999877 344444443
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.91 E-value=1.8e-05 Score=61.21 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=28.1
Q ss_pred hHHHHHHh--hhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 4 TFTKLFSR--LFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 4 ~~~~~~~~--~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
++..++.+ ....+..-|.|+|++++|||+|+|++++.
T Consensus 52 al~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 52 ALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp HHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 44455554 23456678999999999999999999863
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.91 E-value=3.1e-05 Score=58.16 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=53.5
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEE
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...++|.+++|.... |..-......+...... .++|.++|+||+|+.+... .+++... ++..+++++.
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~-----y~~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDI-----YRNIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHH-----HHTTTCCEEE
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHH-----HHhCCCcEEE
Confidence 457899999886654 54433333333322222 3678899999999986532 1222222 2334556889
Q ss_pred ccccCCCChHHHHHHH
Q 030192 158 TCATSGEGLYEGLDWL 173 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i 173 (181)
+|++++.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999887643
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.79 E-value=0.00014 Score=56.09 Aligned_cols=122 Identities=23% Similarity=0.227 Sum_probs=67.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHh-------cCCcc-----cccC-----------ccceeEEE-----------------
Q 030192 16 KEMRILMVGLDAAGKTTILYKLK-------LGEIV-----TTIP-----------TIGFNVET----------------- 55 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~-------~~~~~-----~~~~-----------~~~~~~~~----------------- 55 (181)
....|+++|.+|+||||++..|. +.+.. ...+ ..++....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999885 32210 0000 00111100
Q ss_pred EEECCEEEEEEEcCCCCCcccchh------hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCC
Q 030192 56 VEYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (181)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~ 128 (181)
....++.+.++||||......... .....++.+++|+|+............+.. ..+ .-+|+||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~--------~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNE--------ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHH--------HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhc--------cCCCeEEEEecC
Confidence 011467899999999755432111 113468999999999754333222222211 123 34789999
Q ss_pred CCCCCC-CHhHHHhhhCC
Q 030192 129 DLPNAM-NAAEITDKLGL 145 (181)
Q Consensus 129 Dl~~~~-~~~~~~~~~~~ 145 (181)
|..... ....+....+.
T Consensus 251 D~~~~~g~~l~i~~~~~~ 268 (433)
T 2xxa_A 251 DGDARGGAALSIRHITGK 268 (433)
T ss_dssp TSSSCCTHHHHHHHHHCC
T ss_pred CCCccHHHHHHHHHHHCC
Confidence 975432 22344444443
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.76 E-value=3.3e-05 Score=57.46 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=61.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc---------c-c------------CccceeEEEEE---------------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---------T-I------------PTIGFNVETVE--------------- 57 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---------~-~------------~~~~~~~~~~~--------------- 57 (181)
.+.--++++|++||||||+++.+.+...+. . . ...++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 356789999999999999999996421100 0 0 01111111000
Q ss_pred --ECCEEEEEEEcCCCCCcccchhhc------cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192 58 --YKNISFTVWDVGGQDKIRPLWRHY------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 58 --~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
..+..+.++|++|..........- .-..|-.++++|....... ......+... -...++++||.|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~---~~~~~~~~~~----~~it~iilTKlD 279 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAI---VEQARQFNEA----VKIDGIILTKLD 279 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHH---HHHHHHHHHH----SCCCEEEEECGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHH---HHHHHHHHHh----cCCCEEEEeCcC
Confidence 023456789999965433221111 1147889999998654333 3323232221 122478899999
Q ss_pred CCC
Q 030192 130 LPN 132 (181)
Q Consensus 130 l~~ 132 (181)
...
T Consensus 280 ~~a 282 (328)
T 3e70_C 280 ADA 282 (328)
T ss_dssp GCS
T ss_pred Ccc
Confidence 743
No 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.70 E-value=0.00019 Score=48.48 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhc----cccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY----FQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d~~i~v~d 93 (181)
.-++++|++|||||||++++...-. ..+.....+......+. +|.+|.+.++-....+ ........++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~~~~~~~~-id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~ 80 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDMD-VDKPGKDSYELRKAGAAQTIVASQQRWALMTE 80 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc-----ccCCceeEEeeCCCccc-cCCCCCceEEEEeCCcceeecccchhheeeee
Confidence 4689999999999999999986421 11222223333332222 3555654332111111 011222333333
Q ss_pred C--CCcccHHHHHHHHHHH------HcCCCCCCCeEEEEEeCCCC
Q 030192 94 S--NDRDRVVEARDELHRM------LNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 94 ~--~~~~s~~~~~~~~~~~------~~~~~~~~~piivv~nK~Dl 130 (181)
. .....+..+...+... +........|.+++.+|.+.
T Consensus 81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~ 125 (174)
T 1np6_A 81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAG 125 (174)
T ss_dssp CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSS
T ss_pred ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccC
Confidence 2 1234555554332211 11123346899999999874
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.62 E-value=3.2e-05 Score=52.46 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999754
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.53 E-value=5.7e-05 Score=51.17 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.-.++++|++|||||||++.+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999763
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.52 E-value=8.1e-05 Score=51.59 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=26.3
Q ss_pred HHHHHhhh--cccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 6 TKLFSRLF--AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 6 ~~~~~~~~--~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..+..+.. ......|+|+|++|||||||++.+.+.
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444433 356789999999999999999988653
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.51 E-value=6.4e-05 Score=51.77 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=23.7
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.++..+..-|+++|++|+|||||++.|...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 455567778999999999999999999754
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.51 E-value=4.9e-05 Score=52.38 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
-.++++|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.49 E-value=0.00011 Score=56.59 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=37.9
Q ss_pred CCEEEEEEEcCCCCCcccc-hh-----hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 59 KNISFTVWDVGGQDKIRPL-WR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~-~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
..+.+.++||||....... .. ...-.+|.+++|+|+..... .......+... -...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEK----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhc----CCceEEEEeCcCCcc
Confidence 4577999999997544311 11 11125899999999864322 22222222111 112467889999753
No 244
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.46 E-value=8.8e-05 Score=50.11 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=25.5
Q ss_pred HHhhhcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..++.....-.+++.|++|+|||+|++.+.+.-
T Consensus 30 ~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 30 VHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444556789999999999999999987543
No 245
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.45 E-value=8.1e-05 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHh
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
.+...|+++|++||||||+++.+.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.41 E-value=7.6e-05 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.--++++|++|||||||++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 456899999999999999999764
No 247
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.40 E-value=8e-05 Score=50.68 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
-++++|++||||||+++.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999754
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.37 E-value=0.00011 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
+.-.++++|++||||||+++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999999765
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.36 E-value=9.6e-05 Score=51.19 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
...--++++|++|||||||++.+.+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45557899999999999999999764
No 250
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.36 E-value=0.0046 Score=45.25 Aligned_cols=83 Identities=11% Similarity=0.146 Sum_probs=49.9
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCHhH
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNAAE 138 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~~ 138 (181)
.+.+.++|+|+...... ....+..+|.+++|...+ ..++......+..+.......+.+++ +|+|+.+.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 47899999987644322 233557799999999865 34445554444444332222456655 899999842 23455
Q ss_pred HHhhhCCC
Q 030192 139 ITDKLGLH 146 (181)
Q Consensus 139 ~~~~~~~~ 146 (181)
+.+.++..
T Consensus 232 ~~~~~g~~ 239 (307)
T 3end_A 232 FCKETNFR 239 (307)
T ss_dssp HHHHHTCC
T ss_pred HHHHcCCC
Confidence 55555544
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.36 E-value=8.9e-05 Score=49.81 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=19.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|||||||++.+..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 445689999999999999997543
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.34 E-value=0.00011 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
...-.++++|++|||||||++.+.+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45567899999999999999999764
No 253
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.32 E-value=0.00011 Score=51.48 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..--++++|++|||||||++.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 44578999999999999999997643
No 254
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.31 E-value=0.00029 Score=47.44 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=27.3
Q ss_pred HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
+..+...+.....-.+++.|++|+|||++++.+...
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 344444455455678999999999999999998654
No 255
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.28 E-value=0.00018 Score=49.53 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
....|+++|++||||||+++.+.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999997654
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.27 E-value=0.00017 Score=48.11 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCChHHHHhhH
Q 030192 18 MRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l 37 (181)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.27 E-value=0.00016 Score=50.05 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++...|+++|++|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999865
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.26 E-value=0.00019 Score=49.76 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=22.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
....-|+++|++||||||+++.|....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345578999999999999999997653
No 259
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.25 E-value=0.0018 Score=44.38 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=45.4
Q ss_pred CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCC
Q 030192 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~ 131 (181)
..+.+.++|+|+.. .......+..+|.++++...+... ......+..+.... ...+.++.+|+|+.|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 35789999999876 333455667799999999987443 44444333332211 12456789999999954
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.25 E-value=0.00015 Score=51.29 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44578999999999999999998754
No 261
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.24 E-value=0.00021 Score=49.13 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=23.2
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
......+.|++.|.+||||||+.+.|..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456678999999999999999999854
No 262
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.23 E-value=0.00017 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~ 42 (181)
.-.++++|++|+|||||+|.+.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34789999999999999999997654
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.23 E-value=0.00017 Score=49.17 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHhhHhcC
Q 030192 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~ 40 (181)
|+|+||+||||+||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 264
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.23 E-value=0.00023 Score=48.30 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=23.4
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
...+...|+++|.+||||||+.+.|...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3445678999999999999999998654
No 265
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.20 E-value=0.00019 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...-|+++|++||||||+++.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999965
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.18 E-value=0.0002 Score=47.89 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..|+++|++||||||+.+.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 267
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.18 E-value=0.0002 Score=50.39 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.18 E-value=0.0002 Score=48.66 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 269
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.18 E-value=0.00023 Score=48.26 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=23.7
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++....+...|+++|.+||||||+.+.+..
T Consensus 6 ~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 6 TYKCIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp --CCCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344445678899999999999999999864
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.17 E-value=0.00025 Score=48.73 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|++||||||+++.+.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999854
No 271
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.17 E-value=0.00035 Score=50.27 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=24.3
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
+...-...-.++++|++||||||+++.+.+.
T Consensus 18 ~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 18 LELCHRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp HHGGGCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHhhCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 3333445567999999999999999999763
No 272
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.00025 Score=49.22 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999843
No 273
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.15 E-value=0.00027 Score=47.37 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998854
No 274
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.15 E-value=0.00037 Score=46.76 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=27.1
Q ss_pred HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
+..+...+.....-.+++.|++|+|||++++.+...
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 344444444455678999999999999999988654
No 275
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.15 E-value=0.00023 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999976
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.15 E-value=0.00026 Score=47.10 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 277
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00027 Score=49.11 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.13 E-value=0.00025 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
-.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 279
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.12 E-value=0.00034 Score=51.80 Aligned_cols=24 Identities=38% Similarity=0.272 Sum_probs=21.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHh
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
.+.+-|+++|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998884
No 280
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.12 E-value=0.00033 Score=48.11 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.1
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
........|.++|++||||||+.+.+.+
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3345667899999999999999998864
No 281
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.12 E-value=0.00034 Score=51.46 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.4
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
-...-.++|+|++|+|||||++.+.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 35666899999999999999999864
No 282
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.12 E-value=0.00025 Score=51.47 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44568999999999999999998754
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.11 E-value=0.00037 Score=46.26 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
...-.++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455578999999999999999998754
No 284
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.11 E-value=0.00026 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998764
No 285
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.11 E-value=8.8e-05 Score=54.64 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|+|||||+|.+.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34589999999999999999998754
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.10 E-value=0.00027 Score=49.29 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34467999999999999999998754
No 287
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.09 E-value=0.00027 Score=50.91 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44468999999999999999998754
No 288
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.09 E-value=0.00032 Score=49.87 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=22.2
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+.-.....|+++|+.|||||||++.+.+
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3345667899999999999999999865
No 289
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.09 E-value=0.00031 Score=48.26 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999854
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.09 E-value=0.00027 Score=50.99 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44578999999999999999998754
No 291
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.08 E-value=0.00026 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999764
No 292
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.08 E-value=0.00034 Score=47.38 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999853
No 293
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.08 E-value=0.00033 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|+++|++||||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 294
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.08 E-value=0.00028 Score=50.61 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568999999999999999998754
No 295
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.08 E-value=0.0003 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 296
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.08 E-value=0.00036 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++.+.|+++|.+||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
No 297
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.08 E-value=0.00032 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..|+++|++||||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999875
No 298
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.07 E-value=0.00033 Score=49.99 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998754
No 299
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.07 E-value=0.00027 Score=51.87 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~ 42 (181)
.-.++++|++|||||||+|.+.+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 34689999999999999999987553
No 300
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.06 E-value=0.00037 Score=47.83 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445899999999999999999853
No 301
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.06 E-value=0.00033 Score=49.82 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998753
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.06 E-value=0.00023 Score=50.11 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=17.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHh-cC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLK-LG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~-~~ 40 (181)
+..--++++|++||||||+++.+. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 345578999999999999999998 54
No 303
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.06 E-value=0.00031 Score=49.53 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44478999999999999999998754
No 304
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.05 E-value=0.00038 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
....|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999854
No 305
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.00048 Score=51.80 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=23.7
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.++.....=.++++|++||||||+++.+.+.
T Consensus 116 ~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 116 KRVSDVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HHHHHCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3333334448999999999999999999753
No 306
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.04 E-value=0.00033 Score=50.48 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44468999999999999999998754
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.04 E-value=0.00028 Score=49.05 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.-.++++|+.|||||||++.+.+-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999876
No 308
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.03 E-value=0.00034 Score=49.67 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568999999999999999998754
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.03 E-value=0.00037 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=22.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.....-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45677899999999999999999865
No 310
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.03 E-value=0.00065 Score=48.26 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+.+.|++.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999964
No 311
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.03 E-value=0.00034 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998754
No 312
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.02 E-value=0.00035 Score=49.90 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44468999999999999999998754
No 313
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.02 E-value=0.0004 Score=47.53 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
No 314
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.01 E-value=0.00037 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..-.++++|+.|||||||++.+.+-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4446899999999999999999885
No 315
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.01 E-value=0.00064 Score=46.78 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|++||||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 316
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.01 E-value=0.0004 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44578999999999999999998753
No 317
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.01 E-value=0.00036 Score=51.29 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
...++++|++|+|||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4578999999999999999998 54
No 318
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.01 E-value=0.00042 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+.|+++|+|||||+|....+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.01 E-value=0.00041 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 320
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.99 E-value=0.00077 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHh
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
..+...|+|+|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3567889999999999999998874
No 321
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.99 E-value=0.0005 Score=47.12 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
+...|++.|.+||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999754
No 322
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.99 E-value=0.00039 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..-.++++|+.|||||||++.+.+-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999885
No 323
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.99 E-value=0.00044 Score=48.01 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 324
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.99 E-value=0.00039 Score=50.32 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998754
No 325
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.98 E-value=0.00055 Score=50.42 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+...|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999998865
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.98 E-value=0.00038 Score=48.62 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|||||||++.+.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999976
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.98 E-value=0.0005 Score=47.43 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
....|+++|++||||||+.+.+.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999764
No 328
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.98 E-value=0.00041 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..|.+.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 329
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.97 E-value=0.00044 Score=50.22 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44578999999999999999998754
No 330
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.97 E-value=0.00045 Score=46.82 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 331
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.97 E-value=0.0004 Score=49.71 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998754
No 332
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.96 E-value=0.00042 Score=50.00 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44578999999999999999998754
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.96 E-value=0.00051 Score=47.32 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999964
No 334
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.95 E-value=0.00021 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.++|+|++|||||||++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.95 E-value=0.00049 Score=46.72 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998853
No 336
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.95 E-value=0.00044 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
+.--++++|++|||||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 44568999999999999999887
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.95 E-value=0.00056 Score=46.53 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
No 338
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.95 E-value=0.00056 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+.+.|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998853
No 339
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.94 E-value=0.00051 Score=47.50 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=23.5
Q ss_pred HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
|..+++..++ .-.+++.|+||+|||+++.++.+
T Consensus 48 l~~~~~~iPk--kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 48 LKSFLKGTPK--KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHTCTT--CSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHhcCCc--ccEEEEECCCCCCHHHHHHHHHH
Confidence 4444444332 34599999999999999888764
No 340
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.93 E-value=0.0011 Score=46.43 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..-.+++.|++|+|||++++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998653
No 341
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.93 E-value=0.0006 Score=47.01 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999964
No 342
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.93 E-value=0.00053 Score=46.16 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+...|++.|++||||||+.+.+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999999863
No 343
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.93 E-value=0.0006 Score=47.09 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++...|++.|.+||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999964
No 344
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.92 E-value=0.00055 Score=47.97 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCChHHHHhhHh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
+...|+++|++||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999985
No 345
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.91 E-value=0.00059 Score=45.29 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
No 346
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.91 E-value=0.00058 Score=46.72 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999998754
No 347
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.91 E-value=0.00062 Score=45.96 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999853
No 348
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.90 E-value=0.0007 Score=51.22 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
...-.++++|++||||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44557999999999999999999763
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.89 E-value=0.0006 Score=46.78 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+...|++.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998863
No 350
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.89 E-value=0.00036 Score=51.39 Aligned_cols=27 Identities=33% Similarity=0.248 Sum_probs=22.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+..-.++++|++|||||||++.+.+-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345579999999999999999997643
No 351
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.89 E-value=0.00057 Score=48.08 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+..-|+|.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 55678999999999999999999764
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.89 E-value=0.00044 Score=46.58 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=16.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999853
No 353
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.88 E-value=0.00059 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|||||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999998764
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.88 E-value=0.0006 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+...|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999853
No 355
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.87 E-value=0.00061 Score=49.70 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
....-|++.|++||||||+.+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999964
No 356
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.85 E-value=0.00094 Score=51.29 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=24.1
Q ss_pred HHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
+.++.....=.++|+|++||||||+++.+.+.
T Consensus 159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 33333344446899999999999999999763
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.84 E-value=0.00077 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHh
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
.....|+|+|++||||||+.+.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
No 358
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.84 E-value=0.00069 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+.|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
No 359
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.83 E-value=0.00049 Score=45.13 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|+|||+|++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999997643
No 360
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.83 E-value=0.00059 Score=51.43 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+..-.++++|++|||||||++.+.+..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456689999999999999999998754
No 361
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.83 E-value=0.00052 Score=51.75 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
.-+++|+|++|||||||++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999997643
No 362
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.82 E-value=0.00064 Score=50.61 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|||||||++.+.+-.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998754
No 363
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.81 E-value=0.0007 Score=49.46 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34478999999999999999998754
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.81 E-value=0.00078 Score=45.67 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 365
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.80 E-value=0.0015 Score=50.56 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=25.8
Q ss_pred hHHHHHHh--hhcccccEEEEEcCCCCChHHHHhhHh
Q 030192 4 TFTKLFSR--LFAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 4 ~~~~~~~~--~~~~~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
++..++.+ .......-|.|+|+.++|||+|+|.++
T Consensus 52 Al~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 52 ALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp HHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred HHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHH
Confidence 45555554 234566777899999999999999664
No 366
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.80 E-value=0.00067 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..--++++|+.|||||||++.+.+-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 44568999999999999999998744
No 367
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.79 E-value=0.00067 Score=45.46 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
+|.++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 368
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.79 E-value=0.00069 Score=50.95 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..--++++|+.|||||||++.+.+-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.78 E-value=0.00087 Score=45.66 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|++.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998854
No 370
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.77 E-value=0.0015 Score=44.97 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
....+++.|++|+|||++++.+...
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3335999999999999999998653
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.76 E-value=0.0009 Score=45.53 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 372
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.75 E-value=0.00076 Score=53.17 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
....++++|++||||||+++.+.+.-
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44569999999999999999998643
No 373
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.75 E-value=0.00099 Score=48.99 Aligned_cols=124 Identities=18% Similarity=0.146 Sum_probs=67.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc--------c---ccC-----------ccceeEEEEE----------------
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--------T---TIP-----------TIGFNVETVE---------------- 57 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--------~---~~~-----------~~~~~~~~~~---------------- 57 (181)
+.-.++++|++||||||+++.+.+...+ . ..+ ..++.+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999642100 0 000 0011111000
Q ss_pred -ECCEEEEEEEcCCCCCcccc------------hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030192 58 -YKNISFTVWDVGGQDKIRPL------------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 58 -~~~~~~~i~D~~g~~~~~~~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
..+....+.|++|....... ........+.+++++|........+....+..... ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~-------~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcC-------CcEEE
Confidence 02345678999996432211 11223457888899998765444333333332222 24788
Q ss_pred EeCCCCCCC-CCHhHHHhhhCCC
Q 030192 125 ANKQDLPNA-MNAAEITDKLGLH 146 (181)
Q Consensus 125 ~nK~Dl~~~-~~~~~~~~~~~~~ 146 (181)
+||.|.... -..-.+....+.+
T Consensus 254 vTh~d~~a~gg~~l~i~~~~~~p 276 (304)
T 1rj9_A 254 VTKLDGTAKGGVLIPIVRTLKVP 276 (304)
T ss_dssp EECTTSSCCCTTHHHHHHHHCCC
T ss_pred EECCcccccccHHHHHHHHHCCC
Confidence 999996532 2344555555544
No 374
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.73 E-value=0.00097 Score=46.32 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 375
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.73 E-value=0.001 Score=44.54 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..+.++|++|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 376
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.72 E-value=0.00084 Score=50.41 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44468999999999999999998754
No 377
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.72 E-value=0.001 Score=44.69 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 378
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.71 E-value=0.0017 Score=47.01 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHhhHhcC
Q 030192 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~ 40 (181)
+++.|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 379
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.71 E-value=0.00085 Score=50.83 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..--++++|+.|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 44468999999999999999998754
No 380
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.71 E-value=0.0011 Score=44.90 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998853
No 381
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.71 E-value=0.00087 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 44468999999999999999998743
No 382
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.70 E-value=0.00083 Score=49.35 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++||||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344789999999999999999964
No 383
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.70 E-value=0.0012 Score=46.52 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.....|++.|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998853
No 384
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.69 E-value=0.0011 Score=47.34 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=21.3
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhc
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...+.+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 334667899999999999999998854
No 385
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.69 E-value=0.00091 Score=50.37 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44468999999999999999998754
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.68 E-value=0.00036 Score=48.22 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 387
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.66 E-value=0.00074 Score=48.21 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=21.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|++||||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998853
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.66 E-value=0.0012 Score=46.63 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHh
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
.+.+.|.+.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999886
No 389
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.66 E-value=0.001 Score=44.24 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 390
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.65 E-value=0.001 Score=50.37 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..--++++|+.|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34468999999999999999998754
No 391
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.65 E-value=0.002 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
-++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999754
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.64 E-value=0.001 Score=44.81 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988853
No 393
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.64 E-value=0.0012 Score=47.36 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.64 E-value=0.0017 Score=44.95 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=22.6
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhc
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.......|+++|.+||||||+.+.+..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999864
No 395
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.63 E-value=0.001 Score=50.25 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44568999999999999999997643
No 396
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.63 E-value=0.015 Score=40.19 Aligned_cols=68 Identities=4% Similarity=-0.077 Sum_probs=44.0
Q ss_pred CCEEEEEEEcCCC-CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 59 KNISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
..+.+.++|+|+. ... .....+..+|.++++...+ ..++......+..+.... +.++.+|+|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3577999999987 433 2344567899999999875 334444444433332211 456889999999654
No 397
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.63 E-value=0.0011 Score=46.28 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||+..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344688999999999999999974
No 398
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.63 E-value=0.0011 Score=44.64 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999853
No 399
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.62 E-value=0.0011 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.|+++|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998853
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.61 E-value=0.0013 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHh
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
.+.+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999885
No 401
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.58 E-value=0.0014 Score=43.54 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998843
No 402
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.58 E-value=0.0025 Score=43.59 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..+++.|++|+|||+|+..+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988653
No 403
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..-.++++|++|||||||++.+.+-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4457899999999999999999764
No 404
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.55 E-value=0.00082 Score=50.35 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 44468999999999999999998754
No 405
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0015 Score=50.82 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=24.2
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
.-+..-.++++|+.|||||||++.+.+-.
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 33566789999999999999999997654
No 406
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.52 E-value=0.0013 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||+..+.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 444689999999999999999864
No 407
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.52 E-value=0.0013 Score=43.02 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=17.2
Q ss_pred EEEEcCCCCChHHHHhhHh
Q 030192 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~ 38 (181)
.+|+|+.|+||||+++.+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999984
No 408
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.51 E-value=0.0022 Score=46.08 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.0
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
......+++.|++|+|||++...+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455678999999999999999998753
No 409
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.51 E-value=0.0025 Score=47.40 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+..++++.|++|+||||+++.+.+.
T Consensus 44 g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 44 GKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33345899999999999999998754
No 410
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.50 E-value=0.0028 Score=45.78 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.....+++.|++|+|||++++.+.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999653
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.50 E-value=0.0017 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+...|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999964
No 412
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.49 E-value=0.0014 Score=48.79 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999764
No 413
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.48 E-value=0.0029 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.++++|++|+|||+|++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999754
No 414
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.48 E-value=0.0018 Score=45.21 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
-|+++|+|||||+|....+..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 466789999999999988854
No 415
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.47 E-value=0.0016 Score=45.10 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999976
No 416
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0022 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.++++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999876
No 417
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.44 E-value=0.0032 Score=47.22 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.5
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+....+|+++|++|+||||+...+.+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 44556899999999999999987743
No 418
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.42 E-value=0.00081 Score=50.49 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44568999999999999999998754
No 419
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.42 E-value=0.0036 Score=40.57 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
.....|++.|++|+|||++.+.+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 566789999999999999999987543
No 420
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.42 E-value=0.0032 Score=49.12 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+...+.....-+++++|+||+|||++++.+...
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3444444456678999999999999999988653
No 421
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.41 E-value=0.0017 Score=48.79 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..-.++++|++||||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345789999999999999999964
No 422
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.41 E-value=0.0017 Score=45.60 Aligned_cols=25 Identities=28% Similarity=0.173 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..--++++|++|+|||||+..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4457899999999999999999863
No 423
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.40 E-value=0.0017 Score=50.76 Aligned_cols=24 Identities=46% Similarity=0.600 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..-.++|+|++||||||+++.+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 445789999999999999999954
No 424
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.39 E-value=0.0018 Score=46.20 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999753
No 425
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.39 E-value=0.0038 Score=45.56 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.....+++.|++|+|||++.+.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999987654
No 426
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.36 E-value=0.0033 Score=43.70 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 427
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0021 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.-.|+++|++||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998854
No 428
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.34 E-value=0.0021 Score=48.20 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=24.6
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+-.+.=+++++|+.|+|||||++.+.+..
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33566789999999999999999998764
No 429
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.33 E-value=0.0034 Score=40.66 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.....|++.|++|+|||++.+.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45578999999999999999988754
No 430
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.32 E-value=0.0022 Score=43.85 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
....|++.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998854
No 431
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.31 E-value=0.0017 Score=47.99 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
-++++|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5689999999999999999865
No 432
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.004 Score=46.25 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=24.1
Q ss_pred HHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+...+...+.-.+++.|++|+|||++++.+.+.
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3333333333345999999999999999998754
No 433
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.28 E-value=0.0022 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.27 E-value=0.0031 Score=47.76 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556899999999999999999975
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.26 E-value=0.0031 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+...|+++|++||||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 436
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.24 E-value=0.0024 Score=51.16 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|||||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 44579999999999999999998643
No 437
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.21 E-value=0.005 Score=45.29 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999988653
No 438
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.20 E-value=0.0041 Score=46.79 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+++.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 439
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.20 E-value=0.0048 Score=45.14 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.....+++.|++|+|||++++.+.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34557999999999999999999753
No 440
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.19 E-value=0.0025 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
-.++++|+.|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5679999999999999999965
No 441
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.19 E-value=0.0032 Score=44.30 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..++++++|+|||||||+...+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999998854
No 442
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.18 E-value=0.0022 Score=51.30 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+..-.++++|++|||||||++.+.+-.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345588999999999999999997644
No 443
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.18 E-value=0.0029 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+..
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999998754
No 444
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.16 E-value=0.0029 Score=45.33 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
++...|+|.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 46678999999999999999998653
No 445
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.16 E-value=0.0028 Score=50.80 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=22.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+..-.++++|+.|||||||++.+.+-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345588999999999999999998643
No 446
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.15 E-value=0.0029 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=18.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
..+ .+|+|+.|||||||++.+.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 5699999999999999985
No 447
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.003 Score=46.73 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=24.9
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.......-.+.+.|+||+|||++++.+...
T Consensus 39 ~i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 39 SLMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344567789999999999999999999754
No 448
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.15 E-value=0.002 Score=46.98 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=17.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998853
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.14 E-value=0.0028 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..--++++|+.|||||||++.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44568999999999999999998754
No 450
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.13 E-value=0.0062 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999864
No 451
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.12 E-value=0.0025 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 44578999999999999999998753
No 452
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.12 E-value=0.0026 Score=51.10 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=22.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+..-.++++|++|||||||++.+.+-.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 345589999999999999999998644
No 453
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.12 E-value=0.003 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344689999999999999999864
No 454
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.11 E-value=0.0031 Score=48.73 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=24.3
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+-.+.=+++++|++|+|||||++.+.+..
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33566689999999999999999998754
No 455
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.08 E-value=0.0031 Score=45.83 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
....+++.|++|+|||++++.+.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.05 E-value=0.0038 Score=42.90 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
...-|+|+|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999997543
No 457
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.05 E-value=0.003 Score=50.69 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|||||||++.+.+-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44588999999999999999997643
No 458
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.05 E-value=0.0041 Score=42.59 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 459
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.02 E-value=0.0044 Score=45.20 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=20.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...-+++.|+||+|||++.+.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999999864
No 460
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0035 Score=50.46 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44578999999999999999998744
No 461
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.02 E-value=0.0048 Score=43.83 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999965
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.01 E-value=0.0043 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
....-|+++|.+||||||+.+++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999875
No 463
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.01 E-value=0.0038 Score=43.86 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=18.6
Q ss_pred ccEEEEEcCCCCChHHHHhhHh
Q 030192 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~ 38 (181)
.--+++.|++|+|||+|+.++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3467999999999999988774
No 464
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.99 E-value=0.0049 Score=45.13 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=59.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc------C-Cc--cc---ccCc-----------cceeEEEE-----------EECCE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL------G-EI--VT---TIPT-----------IGFNVETV-----------EYKNI 61 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~------~-~~--~~---~~~~-----------~~~~~~~~-----------~~~~~ 61 (181)
+.-.++++|++|+||||++..+.. + +. .. ..+. .+...... ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 456899999999999999998842 1 10 00 0000 01100000 01456
Q ss_pred EEEEEEcCCCCCcccc----hhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 62 SFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 62 ~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
.+.++||+|....... ....+. ..+.+++|+|++. ....+.++. ......+ ..-+|+||.|...
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~--~~~~~~~~~----~~~~~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA--KYEDMKHIV----KRFSSVP-VNQYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB--CHHHHHHHT----TTTSSSC-CCEEEEECTTTCS
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC--CHHHHHHHH----HHHhcCC-CCEEEEeCCCccc
Confidence 7999999997654321 112222 4678899998863 233333322 2211112 2345669999764
No 465
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.0062 Score=45.59 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
...-.+++.|++|+|||+|++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999753
No 466
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.93 E-value=0.004 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..--+.++|++|+|||||+..+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999754
No 467
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.92 E-value=0.004 Score=45.91 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.-.+++.|++|+|||+|++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998753
No 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.92 E-value=0.004 Score=49.38 Aligned_cols=26 Identities=27% Similarity=0.123 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~ 42 (181)
.-.++++|+.|||||||++.+.+-..
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34689999999999999999987543
No 469
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.89 E-value=0.0046 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 44578999999999999999998754
No 470
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.88 E-value=0.0085 Score=49.45 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=28.2
Q ss_pred HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
+..+...+.......++++|++|+|||++++.+...
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 344555555567789999999999999999998653
No 471
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.009 Score=43.75 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=21.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+...+++.|++|+|||++++.+...
T Consensus 44 ~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 44 GSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 33346999999999999999998754
No 472
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.88 E-value=0.0048 Score=42.51 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChHHHHhhHh
Q 030192 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~ 38 (181)
-.+|+|+.|+||||+++.+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 34789999999999999883
No 473
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.87 E-value=0.0045 Score=45.52 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.-.++++|++|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34689999999999999998853
No 474
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.85 E-value=0.0048 Score=46.01 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.-|+|+|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988854
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.84 E-value=0.0051 Score=42.56 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+.|++.|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988854
No 476
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.84 E-value=0.0084 Score=49.53 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=26.8
Q ss_pred HHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..+...+.....-++++.|+||+|||++++.+...
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34444454566678999999999999999988654
No 477
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.83 E-value=0.0052 Score=48.78 Aligned_cols=27 Identities=37% Similarity=0.261 Sum_probs=22.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~ 42 (181)
..-.++++|+.|||||||++.+.+...
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345789999999999999999987643
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.83 E-value=0.0034 Score=54.94 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+..-+|++||++|||||||++.+.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 3455899999999999999999975
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.82 E-value=0.0058 Score=43.11 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...|++.|..||||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 480
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.78 E-value=0.0051 Score=49.55 Aligned_cols=27 Identities=37% Similarity=0.261 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~ 42 (181)
..-.++++|+.|+|||||++.+.+...
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344689999999999999999987543
No 481
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0092 Score=46.00 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
....-|++.||||+|||+|.+++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34568999999999999999999753
No 482
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.77 E-value=0.0055 Score=44.60 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 483
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.74 E-value=0.0055 Score=45.35 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..|+++|++|||||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988854
No 484
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.73 E-value=0.0076 Score=44.86 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 485
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.73 E-value=0.0069 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.-|+|+|++|||||+|...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45889999999999999999643
No 486
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.73 E-value=0.011 Score=43.22 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=21.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+...+++.|++|+|||++++.+...
T Consensus 40 ~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 40 GNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 33345999999999999999988654
No 487
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.72 E-value=0.009 Score=44.86 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..-.+++.|++|+|||++++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999753
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.71 E-value=0.0063 Score=41.14 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHhhHhcC
Q 030192 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~ 40 (181)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999754
No 489
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.69 E-value=0.0059 Score=42.89 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=18.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+..-|+|.|++||||||+++.+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 490
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.68 E-value=0.0072 Score=44.08 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
-.+++.|++|+|||++.+.+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988654
No 491
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.68 E-value=0.0097 Score=43.40 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+...+++.|++|+|||++++.+...
T Consensus 36 ~~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHHHHHHHH
Confidence 33345999999999999999988653
No 492
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.67 E-value=0.0066 Score=48.28 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+...+.++|++|||||||.+.+.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 46678999999999999999998653
No 493
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.011 Score=45.54 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...-|++.||||+|||++.+++.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 344699999999999999999975
No 494
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0062 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV 43 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~ 43 (181)
.++++|+.|+|||||++.+.+-..+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4799999999999999999876543
No 495
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.63 E-value=0.012 Score=43.43 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=21.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.....+++.|++|+|||++.+.+...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34457999999999999999999543
No 496
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.59 E-value=0.0047 Score=44.19 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
...+++.|++|+|||++++.+.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999999965
No 497
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.59 E-value=0.0066 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..+++.|++|+|||+|.+.+.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999999753
No 498
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.012 Score=45.39 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.-..-|++.||||+|||+|.+++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999999753
No 499
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.59 E-value=0.0086 Score=41.61 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+..-|++.|.+||||||+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457799999999999999999853
No 500
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.58 E-value=0.007 Score=44.51 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.-|+|+|++|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999999964
Done!