Query 030193
Match_columns 181
No_of_seqs 115 out of 1835
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 3E-39 6.5E-44 226.3 19.7 181 1-181 1-181 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 6.4E-38 1.4E-42 219.8 19.4 180 1-180 1-180 (182)
3 smart00177 ARF ARF-like small 100.0 2.7E-36 5.8E-41 210.4 19.0 166 13-178 9-174 (175)
4 cd04149 Arf6 Arf6 subfamily. 100.0 3.9E-36 8.4E-41 208.3 16.7 164 12-175 4-167 (168)
5 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.4E-36 3.1E-41 206.3 10.8 161 15-180 7-174 (205)
6 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.1E-35 6.7E-40 202.1 17.2 158 18-175 1-158 (159)
7 PF00025 Arf: ADP-ribosylation 100.0 1.6E-34 3.4E-39 201.3 20.8 173 5-177 1-175 (175)
8 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.1E-36 1.3E-40 202.7 12.3 163 14-179 19-186 (221)
9 KOG0070 GTP-binding ADP-ribosy 100.0 5.9E-35 1.3E-39 197.1 16.2 180 1-180 1-180 (181)
10 KOG0092 GTPase Rab5/YPT51 and 100.0 3.5E-35 7.6E-40 198.9 12.9 159 15-179 3-168 (200)
11 KOG0073 GTP-binding ADP-ribosy 100.0 2.6E-34 5.7E-39 189.5 16.4 179 1-180 1-180 (185)
12 cd04154 Arl2 Arl2 subfamily. 100.0 3.7E-34 8E-39 199.3 17.9 166 10-175 7-172 (173)
13 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1E-33 2.2E-38 197.3 18.7 170 6-175 4-173 (174)
14 cd04158 ARD1 ARD1 subfamily. 100.0 1E-33 2.2E-38 196.4 18.6 161 19-179 1-162 (169)
15 cd04151 Arl1 Arl1 subfamily. 100.0 3E-33 6.6E-38 191.9 17.1 157 19-175 1-157 (158)
16 smart00178 SAR Sar1p-like memb 100.0 9.2E-33 2E-37 194.0 18.7 171 5-176 4-183 (184)
17 KOG0078 GTP-binding protein SE 100.0 2.2E-34 4.7E-39 198.2 9.7 164 13-180 8-176 (207)
18 cd04157 Arl6 Arl6 subfamily. 100.0 1.7E-32 3.6E-37 188.7 16.8 157 19-175 1-161 (162)
19 cd01875 RhoG RhoG subfamily. 100.0 1.9E-33 4.1E-38 198.6 12.1 163 16-179 2-178 (191)
20 cd04120 Rab12 Rab12 subfamily. 100.0 5.3E-33 1.2E-37 197.2 13.9 156 19-179 2-164 (202)
21 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.9E-32 6.4E-37 188.7 16.8 157 19-175 1-166 (167)
22 cd04126 Rab20 Rab20 subfamily. 100.0 7.1E-33 1.5E-37 198.7 14.1 160 18-178 1-190 (220)
23 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.2E-33 7E-38 194.4 11.8 158 17-179 2-165 (172)
24 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3.5E-32 7.5E-37 187.8 16.4 154 20-175 2-163 (164)
25 cd00878 Arf_Arl Arf (ADP-ribos 100.0 5.3E-32 1.1E-36 185.7 17.2 157 19-175 1-157 (158)
26 KOG0071 GTP-binding ADP-ribosy 100.0 6.4E-32 1.4E-36 173.9 16.2 179 1-179 1-179 (180)
27 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 6.9E-32 1.5E-36 189.5 17.8 164 16-179 2-171 (183)
28 cd04121 Rab40 Rab40 subfamily. 100.0 5.3E-33 1.2E-37 195.5 12.1 158 15-179 4-168 (189)
29 cd00879 Sar1 Sar1 subfamily. 100.0 1.1E-31 2.3E-36 189.5 18.7 163 15-177 17-190 (190)
30 KOG0080 GTPase Rab18, small G 100.0 2.5E-33 5.5E-38 184.4 9.3 162 15-179 9-175 (209)
31 cd04133 Rop_like Rop subfamily 100.0 2.9E-32 6.2E-37 189.8 15.2 160 18-179 2-174 (176)
32 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.1E-32 4.5E-37 191.5 14.3 164 15-179 3-181 (182)
33 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.5E-32 3.2E-37 191.5 13.5 159 18-177 2-174 (175)
34 cd04156 ARLTS1 ARLTS1 subfamil 100.0 7.4E-32 1.6E-36 185.3 16.7 157 19-175 1-159 (160)
35 cd04131 Rnd Rnd subfamily. Th 100.0 3E-32 6.6E-37 190.3 14.6 161 17-178 1-176 (178)
36 cd04155 Arl3 Arl3 subfamily. 100.0 1.5E-31 3.3E-36 185.9 18.0 163 13-175 10-172 (173)
37 cd04122 Rab14 Rab14 subfamily. 100.0 3E-32 6.4E-37 188.5 12.3 157 17-179 2-165 (166)
38 PTZ00369 Ras-like protein; Pro 100.0 3.7E-32 8E-37 191.8 12.8 160 15-179 3-168 (189)
39 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.8E-32 6.1E-37 196.7 11.9 163 15-179 11-189 (232)
40 KOG0098 GTPase Rab2, small G p 100.0 1.3E-32 2.9E-37 185.2 9.4 162 15-180 4-170 (216)
41 KOG0394 Ras-related GTPase [Ge 100.0 3E-32 6.5E-37 183.1 10.9 161 15-178 7-178 (210)
42 cd04136 Rap_like Rap-like subf 100.0 1.1E-31 2.4E-36 184.8 14.1 157 17-177 1-162 (163)
43 cd04127 Rab27A Rab27a subfamil 100.0 6.1E-32 1.3E-36 189.2 12.7 160 16-180 3-179 (180)
44 cd04175 Rap1 Rap1 subgroup. T 100.0 4.4E-32 9.5E-37 187.2 11.8 157 17-178 1-163 (164)
45 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.3E-32 9.4E-37 186.3 11.1 161 15-179 12-177 (222)
46 cd00877 Ran Ran (Ras-related n 100.0 5.4E-31 1.2E-35 182.2 16.8 155 18-179 1-160 (166)
47 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2E-31 4.4E-36 183.1 14.4 156 17-177 1-161 (162)
48 cd04160 Arfrp1 Arfrp1 subfamil 100.0 5.3E-31 1.1E-35 182.2 16.4 157 19-175 1-166 (167)
49 PLN03071 GTP-binding nuclear p 100.0 2.8E-31 6.2E-36 191.0 15.5 156 15-178 11-172 (219)
50 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.4E-31 9.6E-36 188.0 16.3 157 18-179 1-169 (201)
51 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.4E-31 5.1E-36 190.9 14.7 162 17-179 1-177 (222)
52 cd04134 Rho3 Rho3 subfamily. 100.0 1.3E-31 2.8E-36 189.0 12.4 160 18-178 1-174 (189)
53 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.7E-31 1E-35 184.9 15.1 159 18-179 1-167 (182)
54 cd01865 Rab3 Rab3 subfamily. 100.0 2.4E-31 5.2E-36 183.8 13.1 157 18-180 2-165 (165)
55 cd04119 RJL RJL (RabJ-Like) su 100.0 5.3E-31 1.1E-35 182.0 14.2 156 18-178 1-167 (168)
56 cd04176 Rap2 Rap2 subgroup. T 100.0 2.3E-31 5E-36 183.4 12.1 157 17-177 1-162 (163)
57 cd01867 Rab8_Rab10_Rab13_like 100.0 2.5E-31 5.3E-36 184.1 12.3 159 16-180 2-167 (167)
58 cd01871 Rac1_like Rac1-like su 100.0 6.8E-31 1.5E-35 183.0 14.4 158 18-176 2-173 (174)
59 cd04159 Arl10_like Arl10-like 100.0 2.7E-30 5.8E-35 176.6 17.1 156 20-175 2-158 (159)
60 smart00173 RAS Ras subfamily o 100.0 2.8E-31 6E-36 183.1 12.2 157 18-179 1-163 (164)
61 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3E-31 6.6E-36 182.8 12.0 156 17-177 2-163 (164)
62 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.6E-31 7.7E-36 183.8 12.4 157 19-179 2-166 (170)
63 cd04117 Rab15 Rab15 subfamily. 100.0 8.6E-31 1.9E-35 180.4 13.8 154 18-176 1-160 (161)
64 cd04144 Ras2 Ras2 subfamily. 100.0 2.4E-31 5.2E-36 187.8 10.9 157 19-179 1-164 (190)
65 cd04111 Rab39 Rab39 subfamily. 100.0 9.4E-31 2E-35 187.4 12.7 158 17-179 2-167 (211)
66 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.3E-30 2.9E-35 180.1 13.0 157 17-179 2-165 (166)
67 cd04109 Rab28 Rab28 subfamily. 100.0 1.5E-30 3.2E-35 187.0 13.6 157 18-179 1-167 (215)
68 KOG0075 GTP-binding ADP-ribosy 100.0 1.8E-30 3.9E-35 168.5 12.1 168 11-178 14-182 (186)
69 cd01864 Rab19 Rab19 subfamily. 100.0 7.6E-30 1.6E-34 176.2 15.9 157 16-177 2-165 (165)
70 cd04132 Rho4_like Rho4-like su 100.0 5.6E-30 1.2E-34 180.3 15.3 156 18-179 1-168 (187)
71 cd04140 ARHI_like ARHI subfami 100.0 1.3E-30 2.9E-35 180.1 11.7 154 18-176 2-163 (165)
72 cd04103 Centaurin_gamma Centau 100.0 2.5E-30 5.5E-35 177.4 13.0 154 18-177 1-158 (158)
73 KOG0093 GTPase Rab3, small G p 100.0 8.6E-31 1.9E-35 170.1 9.4 162 15-180 19-185 (193)
74 cd04110 Rab35 Rab35 subfamily. 100.0 3E-30 6.6E-35 183.4 13.2 157 15-178 4-167 (199)
75 cd04112 Rab26 Rab26 subfamily. 100.0 2.2E-30 4.7E-35 183.1 12.2 157 18-180 1-165 (191)
76 smart00174 RHO Rho (Ras homolo 100.0 6.7E-30 1.5E-34 177.9 14.1 159 20-179 1-173 (174)
77 cd04125 RabA_like RabA-like su 100.0 3.3E-30 7.1E-35 181.7 12.4 157 18-179 1-163 (188)
78 cd04106 Rab23_lke Rab23-like s 100.0 2.5E-30 5.5E-35 177.9 11.5 152 18-176 1-161 (162)
79 cd01866 Rab2 Rab2 subfamily. 100.0 3.7E-30 7.9E-35 178.4 12.2 157 17-179 4-167 (168)
80 cd04113 Rab4 Rab4 subfamily. 100.0 2.8E-30 6.1E-35 177.6 11.4 154 18-177 1-161 (161)
81 cd01868 Rab11_like Rab11-like. 100.0 5.7E-30 1.2E-34 176.8 13.0 155 17-177 3-164 (165)
82 cd04116 Rab9 Rab9 subfamily. 100.0 1.4E-29 3.1E-34 175.6 15.0 159 15-177 3-170 (170)
83 cd01892 Miro2 Miro2 subfamily. 100.0 4E-29 8.7E-34 173.3 17.2 155 15-179 2-167 (169)
84 cd04135 Tc10 TC10 subfamily. 100.0 5.9E-30 1.3E-34 178.1 12.6 159 18-177 1-173 (174)
85 cd04124 RabL2 RabL2 subfamily. 100.0 8.9E-30 1.9E-34 175.3 13.2 154 18-179 1-159 (161)
86 cd01860 Rab5_related Rab5-rela 100.0 1.4E-29 3E-34 174.4 14.1 155 17-177 1-162 (163)
87 cd01861 Rab6 Rab6 subfamily. 100.0 9.9E-30 2.2E-34 174.8 12.8 155 18-177 1-161 (161)
88 cd04115 Rab33B_Rab33A Rab33B/R 100.0 9.3E-30 2E-34 176.6 12.7 158 17-178 2-169 (170)
89 PF00071 Ras: Ras family; Int 100.0 3.8E-30 8.2E-35 177.1 10.6 154 19-178 1-161 (162)
90 KOG0079 GTP-binding protein H- 100.0 4.7E-31 1E-35 171.5 5.6 157 17-178 8-169 (198)
91 cd01873 RhoBTB RhoBTB subfamil 100.0 7.2E-30 1.6E-34 180.5 12.0 157 17-176 2-194 (195)
92 PLN03118 Rab family protein; P 100.0 7.8E-30 1.7E-34 182.9 12.4 160 15-179 12-178 (211)
93 cd04143 Rhes_like Rhes_like su 100.0 4E-29 8.6E-34 182.4 16.2 156 18-177 1-170 (247)
94 cd04118 Rab24 Rab24 subfamily. 100.0 1.3E-29 2.9E-34 179.2 13.2 155 18-179 1-167 (193)
95 cd04177 RSR1 RSR1 subgroup. R 100.0 1.1E-29 2.4E-34 175.9 12.5 156 18-178 2-164 (168)
96 PLN03110 Rab GTPase; Provision 100.0 1.1E-29 2.4E-34 182.5 12.9 160 15-179 10-175 (216)
97 smart00176 RAN Ran (Ras-relate 100.0 2.9E-29 6.4E-34 177.8 14.7 150 23-179 1-155 (200)
98 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.9E-29 4.1E-34 175.6 12.8 156 18-175 1-171 (173)
99 cd01893 Miro1 Miro1 subfamily. 100.0 3E-29 6.4E-34 173.5 13.5 157 18-178 1-164 (166)
100 smart00175 RAB Rab subfamily o 100.0 1.7E-29 3.8E-34 173.9 12.3 156 18-179 1-163 (164)
101 cd04142 RRP22 RRP22 subfamily. 100.0 1E-28 2.2E-33 175.2 16.1 158 18-179 1-175 (198)
102 cd01862 Rab7 Rab7 subfamily. 100.0 1.5E-28 3.2E-33 170.6 16.5 158 18-179 1-168 (172)
103 cd01863 Rab18 Rab18 subfamily. 100.0 9.4E-29 2E-33 170.0 15.0 155 18-177 1-161 (161)
104 PLN03108 Rab family protein; P 100.0 2.2E-29 4.8E-34 180.3 12.2 159 15-179 4-169 (210)
105 KOG0086 GTPase Rab4, small G p 100.0 2.2E-29 4.8E-34 164.7 10.8 162 15-180 7-173 (214)
106 cd04139 RalA_RalB RalA/RalB su 100.0 2E-28 4.4E-33 168.6 16.3 157 18-179 1-163 (164)
107 cd01870 RhoA_like RhoA-like su 100.0 1.3E-28 2.7E-33 171.6 15.3 160 17-177 1-174 (175)
108 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.9E-29 8.4E-34 172.4 12.5 154 18-177 1-163 (164)
109 cd04146 RERG_RasL11_like RERG/ 100.0 2.9E-29 6.2E-34 173.3 10.2 155 19-178 1-164 (165)
110 KOG0091 GTPase Rab39, small G 100.0 1.6E-29 3.4E-34 167.0 8.2 162 15-179 6-174 (213)
111 cd04148 RGK RGK subfamily. Th 100.0 1.1E-28 2.5E-33 177.8 13.3 154 18-178 1-163 (221)
112 KOG0095 GTPase Rab30, small G 100.0 1.4E-29 2.9E-34 165.1 7.5 157 17-178 7-169 (213)
113 cd00157 Rho Rho (Ras homology) 100.0 7.2E-29 1.6E-33 172.0 11.1 157 18-175 1-170 (171)
114 KOG0072 GTP-binding ADP-ribosy 100.0 7.9E-29 1.7E-33 160.3 10.2 180 1-180 1-181 (182)
115 cd04147 Ras_dva Ras-dva subfam 100.0 4.3E-28 9.3E-33 172.2 15.1 156 19-178 1-163 (198)
116 cd04123 Rab21 Rab21 subfamily. 100.0 2.3E-28 5.1E-33 167.8 12.9 154 18-177 1-161 (162)
117 cd00154 Rab Rab family. Rab G 100.0 2.3E-27 5.1E-32 161.9 14.4 151 18-174 1-158 (159)
118 cd04137 RheB Rheb (Ras Homolog 100.0 1.5E-27 3.3E-32 166.9 13.2 157 18-179 2-164 (180)
119 cd00876 Ras Ras family. The R 100.0 9.9E-28 2.1E-32 164.4 11.7 154 19-177 1-160 (160)
120 cd04114 Rab30 Rab30 subfamily. 100.0 6.4E-27 1.4E-31 162.0 15.6 157 16-177 6-168 (169)
121 cd04129 Rho2 Rho2 subfamily. 100.0 5.7E-27 1.2E-31 165.0 15.2 161 17-178 1-173 (187)
122 KOG0081 GTPase Rab27, small G 100.0 2E-29 4.4E-34 165.8 1.8 163 15-180 7-183 (219)
123 PTZ00132 GTP-binding nuclear p 99.9 2.5E-26 5.3E-31 165.2 16.3 160 13-179 5-169 (215)
124 KOG0088 GTPase Rab21, small G 99.9 4.8E-28 1E-32 159.3 6.3 161 15-179 11-176 (218)
125 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.9E-26 4.2E-31 163.4 13.3 146 18-163 1-175 (202)
126 KOG0074 GTP-binding ADP-ribosy 99.9 2E-26 4.3E-31 148.9 11.5 165 14-178 14-179 (185)
127 cd01897 NOG NOG1 is a nucleola 99.9 9.3E-26 2E-30 156.1 15.6 153 18-177 1-167 (168)
128 KOG0393 Ras-related small GTPa 99.9 8.2E-27 1.8E-31 161.4 9.7 163 15-178 2-179 (198)
129 KOG0395 Ras-related GTPase [Ge 99.9 1.1E-26 2.3E-31 163.7 10.5 159 16-179 2-166 (196)
130 cd01898 Obg Obg subfamily. Th 99.9 8.8E-26 1.9E-30 156.4 14.1 156 19-177 2-170 (170)
131 KOG0076 GTP-binding ADP-ribosy 99.9 7.8E-27 1.7E-31 155.7 7.1 179 1-179 1-188 (197)
132 KOG0083 GTPase Rab26/Rab37, sm 99.9 2.9E-28 6.2E-33 156.1 -0.1 150 21-179 1-161 (192)
133 cd01890 LepA LepA subfamily. 99.9 1.7E-25 3.7E-30 156.3 13.2 151 19-179 2-178 (179)
134 KOG0097 GTPase Rab14, small G 99.9 3.7E-26 8E-31 147.9 8.8 159 15-179 9-174 (215)
135 cd04171 SelB SelB subfamily. 99.9 1.8E-25 3.8E-30 153.8 11.8 151 19-175 2-163 (164)
136 cd01878 HflX HflX subfamily. 99.9 4.2E-25 9E-30 157.6 12.8 153 15-177 39-204 (204)
137 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.1E-25 1.3E-29 151.9 12.8 154 19-178 2-166 (168)
138 PRK04213 GTP-binding protein; 99.9 6.8E-25 1.5E-29 156.1 12.8 159 15-179 7-193 (201)
139 TIGR00231 small_GTP small GTP- 99.9 3.6E-24 7.9E-29 145.8 15.1 154 17-174 1-160 (161)
140 cd00881 GTP_translation_factor 99.9 3.8E-24 8.2E-29 150.4 15.0 156 19-179 1-188 (189)
141 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.6E-23 3.5E-28 142.9 15.5 143 18-177 2-156 (157)
142 PRK15494 era GTPase Era; Provi 99.9 9.8E-24 2.1E-28 160.6 15.9 156 15-179 50-217 (339)
143 PRK12299 obgE GTPase CgtA; Rev 99.9 7.3E-24 1.6E-28 160.5 14.7 158 18-179 159-329 (335)
144 TIGR00436 era GTP-binding prot 99.9 1E-23 2.2E-28 156.4 14.7 151 19-179 2-165 (270)
145 PRK03003 GTP-binding protein D 99.9 1.3E-23 2.7E-28 166.6 16.0 158 16-178 210-382 (472)
146 TIGR03156 GTP_HflX GTP-binding 99.9 8.2E-24 1.8E-28 161.3 14.3 150 16-176 188-350 (351)
147 cd00882 Ras_like_GTPase Ras-li 99.9 3.9E-24 8.4E-29 144.4 10.7 150 22-174 1-156 (157)
148 cd01889 SelB_euk SelB subfamil 99.9 7.7E-24 1.7E-28 149.7 12.4 156 18-178 1-186 (192)
149 PLN00023 GTP-binding protein; 99.9 8.1E-24 1.8E-28 157.3 13.0 123 11-133 15-166 (334)
150 TIGR02528 EutP ethanolamine ut 99.9 2.2E-24 4.8E-29 145.3 9.2 134 19-174 2-141 (142)
151 PRK03003 GTP-binding protein D 99.9 1.2E-23 2.7E-28 166.7 14.8 153 15-179 36-200 (472)
152 cd01894 EngA1 EngA1 subfamily. 99.9 1.6E-23 3.6E-28 143.0 13.1 145 21-177 1-157 (157)
153 cd01879 FeoB Ferrous iron tran 99.9 2.1E-23 4.6E-28 142.7 13.2 146 22-178 1-157 (158)
154 PF02421 FeoB_N: Ferrous iron 99.9 1.1E-23 2.3E-28 142.3 10.9 141 18-173 1-156 (156)
155 cd01891 TypA_BipA TypA (tyrosi 99.9 2.9E-23 6.4E-28 147.0 13.6 145 18-167 3-171 (194)
156 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6.5E-23 1.4E-27 160.5 16.8 149 15-179 201-361 (442)
157 PRK05291 trmE tRNA modificatio 99.9 3.8E-23 8.2E-28 162.6 15.4 146 15-178 213-370 (449)
158 cd01881 Obg_like The Obg-like 99.9 1E-23 2.2E-28 146.8 10.8 152 22-176 1-175 (176)
159 COG1100 GTPase SAR1 and relate 99.9 2.2E-23 4.8E-28 150.1 12.5 162 17-178 5-185 (219)
160 TIGR02729 Obg_CgtA Obg family 99.9 4.4E-23 9.4E-28 156.1 14.2 156 18-177 158-328 (329)
161 cd04105 SR_beta Signal recogni 99.9 5E-23 1.1E-27 146.6 13.4 157 19-175 2-202 (203)
162 cd01895 EngA2 EngA2 subfamily. 99.9 3.2E-22 6.9E-27 138.6 16.3 155 17-176 2-173 (174)
163 TIGR03594 GTPase_EngA ribosome 99.9 9.3E-23 2E-27 160.4 15.1 158 16-178 171-344 (429)
164 PF00009 GTP_EFTU: Elongation 99.9 1E-23 2.3E-28 148.5 8.1 158 16-178 2-187 (188)
165 cd01888 eIF2_gamma eIF2-gamma 99.9 9.4E-23 2E-27 145.3 11.4 157 18-179 1-200 (203)
166 PRK11058 GTPase HflX; Provisio 99.9 5.3E-22 1.1E-26 154.7 16.1 152 18-178 198-362 (426)
167 PTZ00099 rab6; Provisional 99.9 7.8E-23 1.7E-27 142.4 9.9 130 44-179 8-143 (176)
168 cd04163 Era Era subfamily. Er 99.9 4.8E-22 1E-26 136.6 13.5 153 17-177 3-168 (168)
169 PRK12296 obgE GTPase CgtA; Rev 99.9 3.4E-22 7.4E-27 156.9 13.7 158 17-179 159-341 (500)
170 TIGR03594 GTPase_EngA ribosome 99.9 3.4E-22 7.3E-27 157.3 13.7 148 19-178 1-160 (429)
171 KOG4252 GTP-binding protein [S 99.9 4.3E-24 9.3E-29 143.4 2.1 154 15-178 18-181 (246)
172 PRK00093 GTP-binding protein D 99.9 4.8E-22 1E-26 156.6 13.9 147 18-176 2-160 (435)
173 PRK00454 engB GTP-binding prot 99.9 2.2E-22 4.8E-27 142.5 10.8 164 9-179 16-195 (196)
174 TIGR00487 IF-2 translation ini 99.9 1.1E-21 2.3E-26 158.0 16.0 155 15-175 85-247 (587)
175 TIGR01393 lepA GTP-binding pro 99.9 1.1E-21 2.4E-26 158.5 15.7 153 17-179 3-181 (595)
176 PRK15467 ethanolamine utilizat 99.9 3.2E-22 7E-27 137.1 10.7 141 19-178 3-147 (158)
177 COG1160 Predicted GTPases [Gen 99.9 2.4E-22 5.3E-27 153.3 11.0 148 18-177 4-164 (444)
178 cd00880 Era_like Era (E. coli 99.9 1.4E-21 2.9E-26 133.2 13.7 151 22-177 1-163 (163)
179 PF08477 Miro: Miro-like prote 99.9 1.7E-22 3.6E-27 132.2 8.3 110 19-129 1-119 (119)
180 PRK12297 obgE GTPase CgtA; Rev 99.9 2.3E-21 5E-26 150.4 15.9 153 19-179 160-328 (424)
181 PRK05306 infB translation init 99.9 2.1E-21 4.5E-26 159.9 16.0 156 14-175 287-449 (787)
182 PRK00089 era GTPase Era; Revie 99.9 1.8E-21 3.8E-26 146.0 14.4 155 16-178 4-171 (292)
183 COG1159 Era GTPase [General fu 99.9 1E-21 2.2E-26 142.7 12.0 155 16-179 5-173 (298)
184 PRK00093 GTP-binding protein D 99.9 2.4E-21 5.2E-26 152.7 14.8 158 16-178 172-344 (435)
185 PRK09518 bifunctional cytidyla 99.9 2.2E-21 4.8E-26 160.3 14.7 159 16-179 449-622 (712)
186 TIGR03598 GTPase_YsxC ribosome 99.9 4.7E-22 1E-26 139.1 9.0 149 10-167 11-179 (179)
187 PRK09518 bifunctional cytidyla 99.9 2.1E-21 4.5E-26 160.5 14.1 152 16-179 274-437 (712)
188 TIGR00475 selB selenocysteine- 99.9 1E-21 2.2E-26 158.6 11.0 155 18-178 1-166 (581)
189 CHL00189 infB translation init 99.9 4.7E-21 1E-25 156.6 14.8 156 15-176 242-408 (742)
190 COG2229 Predicted GTPase [Gene 99.9 8.2E-21 1.8E-25 128.5 13.0 157 13-176 6-176 (187)
191 PRK05433 GTP-binding protein L 99.9 1.5E-20 3.2E-25 152.2 16.3 155 15-179 5-185 (600)
192 PRK12317 elongation factor 1-a 99.9 4.7E-21 1E-25 150.4 12.8 153 15-169 4-196 (425)
193 PRK12298 obgE GTPase CgtA; Rev 99.9 1E-20 2.2E-25 146.0 13.9 159 19-179 161-334 (390)
194 COG0486 ThdF Predicted GTPase 99.9 1.8E-20 4E-25 143.5 15.1 151 15-179 215-377 (454)
195 cd04168 TetM_like Tet(M)-like 99.9 4E-20 8.8E-25 134.3 14.5 156 19-179 1-236 (237)
196 cd01896 DRG The developmentall 99.8 7.3E-20 1.6E-24 132.8 15.1 149 19-177 2-225 (233)
197 TIGR01394 TypA_BipA GTP-bindin 99.8 3.2E-20 6.9E-25 149.9 14.5 157 18-179 2-192 (594)
198 TIGR00483 EF-1_alpha translati 99.8 1.1E-20 2.4E-25 148.4 11.4 152 15-168 5-197 (426)
199 COG1160 Predicted GTPases [Gen 99.8 4.5E-20 9.8E-25 141.0 14.2 157 16-177 177-350 (444)
200 TIGR00491 aIF-2 translation in 99.8 2.5E-20 5.3E-25 150.0 13.2 153 16-176 3-214 (590)
201 TIGR03680 eif2g_arch translati 99.8 1.4E-20 3E-25 146.7 10.9 159 15-178 2-196 (406)
202 PRK10218 GTP-binding protein; 99.8 5.1E-20 1.1E-24 148.6 14.4 160 15-179 3-196 (607)
203 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.1E-20 8.8E-25 130.6 11.2 145 17-166 2-171 (195)
204 TIGR00437 feoB ferrous iron tr 99.8 3.7E-20 8.1E-25 149.7 12.1 139 24-177 1-154 (591)
205 PRK09554 feoB ferrous iron tra 99.8 1.1E-19 2.3E-24 150.4 14.4 147 16-177 2-167 (772)
206 cd04166 CysN_ATPS CysN_ATPS su 99.8 4.5E-20 9.8E-25 132.0 10.6 146 19-168 1-184 (208)
207 cd01883 EF1_alpha Eukaryotic e 99.8 1.9E-20 4E-25 134.9 8.6 146 19-167 1-194 (219)
208 COG0218 Predicted GTPase [Gene 99.8 1.4E-19 3.1E-24 125.0 12.2 161 9-179 16-198 (200)
209 PF10662 PduV-EutP: Ethanolami 99.8 3.5E-20 7.7E-25 122.7 8.5 136 18-174 2-142 (143)
210 PRK04000 translation initiatio 99.8 1.1E-19 2.3E-24 141.7 11.4 159 15-178 7-201 (411)
211 PRK10512 selenocysteinyl-tRNA- 99.8 1.1E-19 2.3E-24 147.4 11.1 153 19-178 2-166 (614)
212 PRK04004 translation initiatio 99.8 3.4E-19 7.5E-24 143.8 13.6 153 15-175 4-215 (586)
213 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.4E-19 5.3E-24 129.2 11.3 152 19-175 1-220 (224)
214 KOG0077 Vesicle coat complex C 99.8 4.4E-20 9.6E-25 122.6 6.7 163 15-177 18-192 (193)
215 KOG1673 Ras GTPases [General f 99.8 1E-19 2.2E-24 119.7 8.1 161 16-178 19-186 (205)
216 cd04169 RF3 RF3 subfamily. Pe 99.8 1.5E-18 3.4E-23 128.1 14.7 111 17-132 2-137 (267)
217 cd01876 YihA_EngB The YihA (En 99.8 9.5E-19 2.1E-23 120.5 11.3 153 19-177 1-170 (170)
218 cd01886 EF-G Elongation factor 99.8 2.5E-18 5.4E-23 127.1 13.0 109 19-132 1-130 (270)
219 PRK12736 elongation factor Tu; 99.8 1.3E-18 2.8E-23 135.2 11.6 159 15-178 10-201 (394)
220 COG1084 Predicted GTPase [Gene 99.8 3.5E-18 7.6E-23 125.6 13.0 161 9-176 158-334 (346)
221 cd04167 Snu114p Snu114p subfam 99.8 2.6E-18 5.7E-23 123.3 11.6 156 19-179 2-212 (213)
222 PRK00741 prfC peptide chain re 99.8 9.1E-18 2E-22 134.1 15.7 113 15-132 8-145 (526)
223 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.9E-18 4.2E-23 117.3 9.8 156 17-179 10-170 (216)
224 PRK12735 elongation factor Tu; 99.8 2.2E-18 4.8E-23 134.0 11.6 158 15-177 10-202 (396)
225 cd04170 EF-G_bact Elongation f 99.8 8.5E-18 1.8E-22 124.6 14.1 109 19-132 1-130 (268)
226 KOG3883 Ras family small GTPas 99.8 1E-17 2.2E-22 110.0 12.7 161 15-178 7-175 (198)
227 KOG1707 Predicted Ras related/ 99.8 5E-19 1.1E-23 138.0 7.6 161 14-178 6-175 (625)
228 cd04104 p47_IIGP_like p47 (47- 99.8 2.7E-18 5.8E-23 121.8 10.1 156 17-179 1-185 (197)
229 COG0370 FeoB Fe2+ transport sy 99.8 7E-18 1.5E-22 134.4 13.4 150 16-180 2-166 (653)
230 PRK13351 elongation factor G; 99.8 1.5E-17 3.2E-22 137.6 15.8 114 15-133 6-140 (687)
231 KOG0090 Signal recognition par 99.8 7E-18 1.5E-22 116.8 11.4 162 15-177 36-238 (238)
232 KOG4423 GTP-binding protein-li 99.8 6.3E-20 1.4E-24 124.1 1.1 161 15-179 23-195 (229)
233 TIGR00485 EF-Tu translation el 99.8 4.8E-18 1E-22 132.2 11.6 145 15-164 10-179 (394)
234 CHL00071 tufA elongation facto 99.8 3.8E-18 8.2E-23 133.2 11.0 146 15-165 10-180 (409)
235 KOG0462 Elongation factor-type 99.8 1.4E-17 3.1E-22 129.2 13.6 161 13-180 56-237 (650)
236 COG0532 InfB Translation initi 99.8 1.8E-17 3.9E-22 128.8 13.6 155 15-175 3-167 (509)
237 KOG1489 Predicted GTP-binding 99.8 9.1E-18 2E-22 122.7 11.0 154 16-176 195-365 (366)
238 TIGR00484 EF-G translation elo 99.8 5.8E-17 1.2E-21 134.0 16.3 113 15-132 8-141 (689)
239 PRK00049 elongation factor Tu; 99.8 1.2E-17 2.5E-22 130.0 11.5 158 15-177 10-202 (396)
240 PLN00043 elongation factor 1-a 99.7 1.2E-17 2.6E-22 131.3 10.8 149 15-168 5-203 (447)
241 PRK05124 cysN sulfate adenylyl 99.7 1.3E-17 2.9E-22 132.0 10.9 151 14-169 24-216 (474)
242 TIGR00503 prfC peptide chain r 99.7 8E-17 1.7E-21 128.7 15.2 112 15-131 9-145 (527)
243 PF09439 SRPRB: Signal recogni 99.7 4.2E-18 9.2E-23 117.6 6.8 125 16-141 2-135 (181)
244 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 9.3E-18 2E-22 120.7 8.7 158 19-178 1-176 (232)
245 KOG1423 Ras-like GTPase ERA [C 99.7 2.6E-17 5.7E-22 119.8 11.0 159 14-178 69-271 (379)
246 COG2262 HflX GTPases [General 99.7 9.7E-17 2.1E-21 121.3 14.3 154 14-178 189-356 (411)
247 PLN03126 Elongation factor Tu; 99.7 2.1E-17 4.6E-22 130.5 11.3 146 15-165 79-249 (478)
248 PTZ00327 eukaryotic translatio 99.7 2E-17 4.3E-22 129.9 10.8 159 15-178 32-233 (460)
249 TIGR02034 CysN sulfate adenyly 99.7 1.7E-17 3.8E-22 129.4 10.2 147 18-168 1-187 (406)
250 PRK05506 bifunctional sulfate 99.7 1.7E-17 3.7E-22 136.0 10.6 160 5-168 12-211 (632)
251 PLN03127 Elongation factor Tu; 99.7 4.9E-17 1.1E-21 127.8 12.5 159 15-178 59-252 (447)
252 PTZ00141 elongation factor 1- 99.7 3.9E-17 8.5E-22 128.5 11.1 150 15-168 5-203 (446)
253 COG1163 DRG Predicted GTPase [ 99.7 4.7E-16 1E-20 114.3 14.7 153 16-178 62-289 (365)
254 COG0481 LepA Membrane GTPase L 99.7 1.1E-16 2.4E-21 122.6 11.9 156 15-180 7-188 (603)
255 PF01926 MMR_HSR1: 50S ribosom 99.7 2.8E-16 6.1E-21 102.3 12.2 103 19-127 1-116 (116)
256 cd01885 EF2 EF2 (for archaea a 99.7 1.9E-16 4E-21 113.8 10.7 108 19-131 2-138 (222)
257 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.5E-16 3.2E-21 112.9 9.6 160 18-179 1-185 (196)
258 KOG1191 Mitochondrial GTPase [ 99.7 3.5E-16 7.6E-21 120.3 12.1 165 15-179 266-451 (531)
259 PRK12739 elongation factor G; 99.7 3.7E-16 8E-21 129.2 12.9 114 15-133 6-140 (691)
260 KOG1145 Mitochondrial translat 99.7 5.5E-16 1.2E-20 120.6 11.9 156 15-176 151-314 (683)
261 cd01850 CDC_Septin CDC/Septin. 99.7 2.8E-16 6E-21 116.6 9.7 138 17-160 4-184 (276)
262 PRK00007 elongation factor G; 99.7 8.9E-16 1.9E-20 126.9 13.3 113 15-132 8-141 (693)
263 cd01899 Ygr210 Ygr210 subfamil 99.7 1.2E-15 2.6E-20 115.0 12.4 76 20-95 1-110 (318)
264 COG5256 TEF1 Translation elong 99.7 7.1E-16 1.5E-20 116.7 9.9 149 15-168 5-201 (428)
265 KOG1490 GTP-binding protein CR 99.7 8.8E-17 1.9E-21 123.8 5.0 168 9-178 158-341 (620)
266 COG3596 Predicted GTPase [Gene 99.7 3.7E-16 7.9E-21 112.6 7.8 160 14-178 36-222 (296)
267 cd00066 G-alpha G protein alph 99.7 2.1E-15 4.5E-20 114.1 12.1 133 47-179 147-312 (317)
268 PRK12740 elongation factor G; 99.6 4.5E-15 9.7E-20 122.7 14.5 105 23-132 1-126 (668)
269 smart00275 G_alpha G protein a 99.6 6.4E-15 1.4E-19 112.3 13.2 132 48-179 171-335 (342)
270 COG0536 Obg Predicted GTPase [ 99.6 1.1E-14 2.3E-19 107.9 11.1 153 19-179 161-334 (369)
271 PRK09866 hypothetical protein; 99.6 6.2E-14 1.3E-18 112.2 14.0 112 61-175 230-350 (741)
272 PRK09602 translation-associate 99.6 6.2E-14 1.3E-18 108.7 12.8 78 18-95 2-113 (396)
273 PRK14845 translation initiatio 99.6 4.4E-14 9.6E-19 119.5 12.5 140 28-175 472-670 (1049)
274 PRK13768 GTPase; Provisional 99.6 1E-14 2.2E-19 107.1 7.6 117 61-178 97-247 (253)
275 COG4917 EutP Ethanolamine util 99.6 4.5E-15 9.8E-20 94.5 4.8 139 18-176 2-144 (148)
276 COG1217 TypA Predicted membran 99.6 7.4E-14 1.6E-18 107.1 11.8 160 16-180 4-197 (603)
277 COG5257 GCD11 Translation init 99.5 1.6E-14 3.5E-19 106.1 7.1 159 15-178 8-202 (415)
278 TIGR00490 aEF-2 translation el 99.5 3E-14 6.5E-19 118.3 9.4 113 15-132 17-152 (720)
279 PF04548 AIG1: AIG1 family; I 99.5 2.7E-14 5.9E-19 102.3 6.6 160 18-179 1-187 (212)
280 PRK07560 elongation factor EF- 99.5 1.3E-13 2.8E-18 114.8 10.5 112 15-131 18-152 (731)
281 cd01853 Toc34_like Toc34-like 99.5 2.6E-13 5.6E-18 99.2 10.5 116 15-133 29-164 (249)
282 COG3276 SelB Selenocysteine-sp 99.5 2.6E-13 5.7E-18 103.6 10.4 153 19-177 2-161 (447)
283 TIGR00991 3a0901s02IAP34 GTP-b 99.5 8.9E-13 1.9E-17 98.1 12.4 115 15-132 36-167 (313)
284 KOG0082 G-protein alpha subuni 99.5 3.3E-13 7.2E-18 101.6 10.1 134 46-179 180-345 (354)
285 KOG1532 GTPase XAB1, interacts 99.5 9.5E-14 2.1E-18 100.1 6.7 164 12-178 14-264 (366)
286 PRK09435 membrane ATPase/prote 99.5 1.5E-13 3.1E-18 103.9 7.7 108 59-178 147-260 (332)
287 KOG3905 Dynein light intermedi 99.5 3.1E-13 6.7E-18 99.7 9.1 159 16-178 51-290 (473)
288 cd01882 BMS1 Bms1. Bms1 is an 99.5 4.3E-13 9.2E-18 97.0 9.0 138 15-163 37-181 (225)
289 TIGR00101 ureG urease accessor 99.5 2.8E-12 6E-17 91.0 12.4 104 61-179 92-197 (199)
290 PLN00116 translation elongatio 99.4 4.4E-13 9.6E-18 113.0 9.5 112 15-131 17-163 (843)
291 COG2895 CysN GTPases - Sulfate 99.4 4.5E-13 9.8E-18 99.7 8.0 145 15-167 4-192 (431)
292 KOG0458 Elongation factor 1 al 99.4 1.4E-12 3.1E-17 102.4 11.2 153 14-169 174-373 (603)
293 PF03029 ATP_bind_1: Conserved 99.4 1.6E-13 3.5E-18 99.7 5.1 111 62-177 92-236 (238)
294 PF05049 IIGP: Interferon-indu 99.4 9.3E-13 2E-17 100.4 8.8 156 15-178 33-218 (376)
295 PTZ00416 elongation factor 2; 99.4 1.1E-12 2.4E-17 110.4 9.9 112 15-131 17-157 (836)
296 PF03308 ArgK: ArgK protein; 99.4 7.2E-13 1.6E-17 95.6 7.2 150 15-176 27-228 (266)
297 KOG1144 Translation initiation 99.4 1.5E-12 3.2E-17 104.8 9.0 156 15-178 473-687 (1064)
298 PF00735 Septin: Septin; Inte 99.4 5.1E-12 1.1E-16 94.0 9.3 120 17-141 4-165 (281)
299 KOG1486 GTP-binding protein DR 99.3 7.3E-11 1.6E-15 84.5 14.1 83 16-99 61-154 (364)
300 TIGR00073 hypB hydrogenase acc 99.3 2.1E-11 4.6E-16 87.1 11.5 153 10-177 15-206 (207)
301 TIGR00157 ribosome small subun 99.3 9.4E-12 2E-16 91.0 9.5 95 72-175 24-120 (245)
302 PTZ00258 GTP-binding protein; 99.3 1.9E-11 4.1E-16 94.2 11.5 81 15-95 19-126 (390)
303 TIGR00750 lao LAO/AO transport 99.3 3E-11 6.5E-16 91.0 12.1 107 59-177 125-237 (300)
304 PF00503 G-alpha: G-protein al 99.3 1.2E-11 2.6E-16 96.4 10.3 130 48-177 222-389 (389)
305 PF05783 DLIC: Dynein light in 99.3 1.9E-11 4.1E-16 96.3 11.1 162 16-179 24-265 (472)
306 COG0480 FusA Translation elong 99.3 7.2E-12 1.6E-16 102.7 8.7 114 14-132 7-142 (697)
307 smart00010 small_GTPase Small 99.3 7.1E-12 1.5E-16 82.0 7.1 113 18-167 1-115 (124)
308 PF00350 Dynamin_N: Dynamin fa 99.3 2.8E-11 6E-16 83.6 9.6 64 61-128 101-168 (168)
309 KOG1707 Predicted Ras related/ 99.3 1.3E-10 2.9E-15 91.6 14.0 152 13-177 421-582 (625)
310 COG4108 PrfC Peptide chain rel 99.3 5.9E-11 1.3E-15 90.8 11.5 112 15-131 10-146 (528)
311 COG1703 ArgK Putative periplas 99.3 6E-11 1.3E-15 87.0 10.8 107 59-177 142-253 (323)
312 KOG3886 GTP-binding protein [S 99.3 1.4E-11 3E-16 86.9 6.7 146 16-163 3-164 (295)
313 KOG1487 GTP-binding protein DR 99.3 6.7E-11 1.4E-15 85.0 9.8 149 18-177 60-280 (358)
314 COG5019 CDC3 Septin family pro 99.3 3.7E-11 7.9E-16 90.2 8.5 136 15-156 21-199 (373)
315 KOG0461 Selenocysteine-specifi 99.2 7.3E-11 1.6E-15 88.0 9.8 157 15-178 5-193 (522)
316 TIGR02836 spore_IV_A stage IV 99.2 2.2E-10 4.8E-15 87.9 11.8 152 15-174 15-233 (492)
317 COG0050 TufB GTPases - transla 99.2 7.8E-11 1.7E-15 86.1 8.7 157 15-178 10-201 (394)
318 COG0378 HypB Ni2+-binding GTPa 99.2 2.6E-10 5.7E-15 78.8 9.7 143 18-177 14-200 (202)
319 KOG2655 Septin family protein 99.2 3.8E-10 8.2E-15 85.3 10.8 137 16-158 20-197 (366)
320 KOG0468 U5 snRNP-specific prot 99.2 2.8E-11 6.1E-16 96.6 4.8 112 15-131 126-262 (971)
321 KOG3887 Predicted small GTPase 99.2 4.7E-10 1E-14 79.9 10.1 159 17-178 27-202 (347)
322 PRK10463 hydrogenase nickel in 99.1 1.4E-09 2.9E-14 80.7 11.9 57 118-177 230-288 (290)
323 TIGR00993 3a0901s04IAP86 chlor 99.1 7.8E-10 1.7E-14 89.4 9.8 115 16-132 117-250 (763)
324 smart00053 DYNc Dynamin, GTPas 99.1 5.2E-09 1.1E-13 76.0 13.0 114 16-133 25-207 (240)
325 KOG1954 Endocytosis/signaling 99.1 1.2E-09 2.5E-14 82.4 9.1 125 13-141 54-234 (532)
326 COG5258 GTPBP1 GTPase [General 99.1 2.2E-09 4.8E-14 81.2 10.1 157 14-175 114-336 (527)
327 cd01859 MJ1464 MJ1464. This f 99.0 5.6E-10 1.2E-14 76.3 5.7 95 74-178 2-96 (156)
328 KOG0410 Predicted GTP binding 99.0 5.5E-10 1.2E-14 82.7 5.5 150 15-179 176-342 (410)
329 PRK12289 GTPase RsgA; Reviewed 99.0 1.6E-09 3.5E-14 82.9 7.7 90 78-176 83-173 (352)
330 cd04178 Nucleostemin_like Nucl 99.0 1.8E-09 4E-14 74.8 6.6 55 15-70 115-171 (172)
331 PRK09601 GTP-binding protein Y 99.0 1.9E-09 4E-14 82.5 7.1 78 18-95 3-107 (364)
332 cd01855 YqeH YqeH. YqeH is an 99.0 1.2E-09 2.5E-14 77.1 5.3 98 74-178 24-125 (190)
333 cd01900 YchF YchF subfamily. 99.0 1.3E-09 2.9E-14 80.6 5.7 76 20-95 1-103 (274)
334 COG0012 Predicted GTPase, prob 99.0 1.6E-08 3.4E-13 76.7 11.3 79 17-95 2-108 (372)
335 cd01858 NGP_1 NGP-1. Autoanti 98.9 4.5E-09 9.8E-14 71.9 7.2 54 16-70 101-156 (157)
336 KOG1143 Predicted translation 98.9 5.4E-09 1.2E-13 79.0 7.8 150 16-170 166-380 (591)
337 KOG2486 Predicted GTPase [Gene 98.9 1.3E-09 2.8E-14 79.1 3.9 155 13-175 132-313 (320)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 5.9E-09 1.3E-13 70.0 6.4 52 19-71 85-138 (141)
339 KOG0467 Translation elongation 98.9 5.9E-09 1.3E-13 84.6 7.3 108 14-129 6-135 (887)
340 PRK00098 GTPase RsgA; Reviewed 98.9 6.5E-09 1.4E-13 78.3 7.0 86 82-175 78-164 (298)
341 KOG1547 Septin CDC10 and relat 98.9 1.3E-08 2.8E-13 72.6 7.7 121 16-141 45-207 (336)
342 PRK12288 GTPase RsgA; Reviewed 98.9 1.4E-08 3E-13 77.8 8.2 89 82-176 118-206 (347)
343 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.3E-08 2.8E-13 76.2 7.8 88 79-175 73-161 (287)
344 KOG0460 Mitochondrial translat 98.8 2.1E-08 4.6E-13 74.9 8.4 139 17-161 54-218 (449)
345 KOG0466 Translation initiation 98.8 2.1E-09 4.5E-14 79.2 2.9 159 15-178 36-241 (466)
346 COG5192 BMS1 GTP-binding prote 98.8 1.4E-08 3.1E-13 80.5 7.4 138 17-161 69-209 (1077)
347 cd01858 NGP_1 NGP-1. Autoanti 98.8 2E-08 4.3E-13 68.7 6.9 90 81-177 5-94 (157)
348 KOG0705 GTPase-activating prot 98.8 1E-08 2.2E-13 80.7 5.8 154 17-178 30-189 (749)
349 TIGR03597 GTPase_YqeH ribosome 98.8 6.3E-09 1.4E-13 80.3 4.4 98 71-176 50-151 (360)
350 cd01849 YlqF_related_GTPase Yl 98.8 2.6E-08 5.6E-13 68.0 6.9 82 86-176 1-83 (155)
351 KOG0448 Mitofusin 1 GTPase, in 98.7 1.7E-07 3.8E-12 75.6 10.6 118 10-132 102-275 (749)
352 KOG0099 G protein subunit Galp 98.7 1.1E-07 2.3E-12 68.9 8.3 84 48-131 189-282 (379)
353 cd01859 MJ1464 MJ1464. This f 98.7 5.9E-08 1.3E-12 66.2 6.7 56 15-70 99-155 (156)
354 cd01855 YqeH YqeH. YqeH is an 98.7 2.9E-08 6.2E-13 70.0 5.2 54 16-70 126-189 (190)
355 PRK09563 rbgA GTPase YlqF; Rev 98.7 5E-08 1.1E-12 73.2 6.7 56 15-71 119-176 (287)
356 KOG0463 GTP-binding protein GP 98.7 6E-08 1.3E-12 73.6 7.1 149 17-171 133-351 (641)
357 KOG0464 Elongation factor G [T 98.7 4.4E-09 9.4E-14 80.5 0.9 125 15-144 35-183 (753)
358 TIGR03596 GTPase_YlqF ribosome 98.7 5.4E-08 1.2E-12 72.6 6.7 55 16-71 117-173 (276)
359 KOG3859 Septins (P-loop GTPase 98.7 3.2E-08 6.9E-13 72.1 5.1 118 17-139 42-197 (406)
360 cd01856 YlqF YlqF. Proteins o 98.7 5.6E-08 1.2E-12 67.4 6.3 56 15-71 113-170 (171)
361 KOG0459 Polypeptide release fa 98.7 2.1E-08 4.6E-13 76.4 4.4 154 13-171 75-279 (501)
362 COG1161 Predicted GTPases [Gen 98.7 6.2E-08 1.4E-12 73.7 6.7 54 15-71 130-187 (322)
363 KOG0085 G protein subunit Galp 98.6 4E-08 8.7E-13 69.9 4.0 132 47-179 185-350 (359)
364 KOG0465 Mitochondrial elongati 98.6 1.4E-07 3E-12 75.3 7.2 112 15-131 37-169 (721)
365 cd01856 YlqF YlqF. Proteins o 98.6 1.4E-07 3E-12 65.4 6.4 88 78-177 13-100 (171)
366 cd01851 GBP Guanylate-binding 98.6 4.1E-07 9E-12 65.8 8.5 83 16-98 6-105 (224)
367 cd01849 YlqF_related_GTPase Yl 98.6 2.3E-07 5E-12 63.3 6.8 53 15-70 98-154 (155)
368 TIGR00092 GTP-binding protein 98.6 3.6E-07 7.7E-12 70.2 8.2 78 18-95 3-108 (368)
369 TIGR03596 GTPase_YlqF ribosome 98.5 1.8E-07 4E-12 69.8 5.4 90 77-178 14-103 (276)
370 KOG0447 Dynamin-like GTP bindi 98.5 2.7E-06 5.8E-11 67.7 11.5 133 13-148 304-511 (980)
371 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 2E-07 4.4E-12 62.6 4.7 78 80-165 7-84 (141)
372 TIGR03348 VI_IcmF type VI secr 98.5 7.7E-07 1.7E-11 78.2 9.3 113 18-132 112-257 (1169)
373 KOG1491 Predicted GTP-binding 98.5 5.6E-07 1.2E-11 67.4 6.9 81 15-95 18-125 (391)
374 PRK13796 GTPase YqeH; Provisio 98.4 5.2E-07 1.1E-11 69.9 5.3 97 73-177 58-158 (365)
375 cd03112 CobW_like The function 98.4 1.2E-06 2.6E-11 60.0 6.4 65 60-130 86-158 (158)
376 PRK12288 GTPase RsgA; Reviewed 98.4 5.8E-07 1.3E-11 69.0 4.9 54 19-75 207-271 (347)
377 PRK09563 rbgA GTPase YlqF; Rev 98.4 9.1E-07 2E-11 66.4 5.9 89 78-178 18-106 (287)
378 TIGR03597 GTPase_YqeH ribosome 98.3 1.6E-06 3.4E-11 67.2 6.7 55 17-72 154-215 (360)
379 PF03193 DUF258: Protein of un 98.3 4.9E-07 1.1E-11 61.6 3.4 24 18-41 36-59 (161)
380 PRK13796 GTPase YqeH; Provisio 98.3 2.1E-06 4.6E-11 66.5 7.1 55 16-71 159-220 (365)
381 PRK01889 GTPase RsgA; Reviewed 98.3 4.4E-06 9.5E-11 64.6 8.7 84 82-174 110-193 (356)
382 PRK10416 signal recognition pa 98.3 8E-06 1.7E-10 62.1 9.4 138 16-170 113-302 (318)
383 PRK12289 GTPase RsgA; Reviewed 98.3 1.3E-06 2.8E-11 67.2 4.8 23 19-41 174-196 (352)
384 TIGR00157 ribosome small subun 98.3 3E-06 6.6E-11 62.1 6.5 52 18-73 121-183 (245)
385 PRK14974 cell division protein 98.2 8.2E-06 1.8E-10 62.3 8.5 139 16-171 139-323 (336)
386 TIGR00064 ftsY signal recognit 98.2 2.3E-05 4.9E-10 58.4 9.6 95 59-170 153-260 (272)
387 TIGR01425 SRP54_euk signal rec 98.2 1.6E-05 3.4E-10 62.5 8.9 110 17-133 100-254 (429)
388 cd03114 ArgK-like The function 98.1 2.2E-05 4.7E-10 53.2 8.0 58 60-129 91-148 (148)
389 COG1618 Predicted nucleotide k 98.1 6.8E-05 1.5E-09 50.8 10.1 25 15-39 3-27 (179)
390 KOG1424 Predicted GTP-binding 98.1 4.6E-06 9.9E-11 65.7 4.3 53 17-70 314-368 (562)
391 KOG1534 Putative transcription 98.1 1.2E-05 2.7E-10 56.6 5.9 113 61-177 98-250 (273)
392 PF09547 Spore_IV_A: Stage IV 98.1 6.5E-05 1.4E-09 58.4 10.1 151 15-173 15-232 (492)
393 PF05621 TniB: Bacterial TniB 98.0 1.3E-05 2.8E-10 59.8 5.9 40 5-44 49-88 (302)
394 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.6E-05 3.5E-10 59.7 6.6 57 18-75 162-227 (287)
395 PRK00098 GTPase RsgA; Reviewed 98.0 9.7E-06 2.1E-10 61.2 5.4 26 17-42 164-189 (298)
396 KOG0469 Elongation factor 2 [T 98.0 2.6E-05 5.7E-10 61.6 7.7 111 15-130 17-162 (842)
397 PF00448 SRP54: SRP54-type pro 98.0 2.1E-05 4.6E-10 55.7 6.6 109 19-134 3-156 (196)
398 PF06858 NOG1: Nucleolar GTP-b 98.0 9.9E-06 2.1E-10 45.0 3.2 45 83-129 12-58 (58)
399 PF02492 cobW: CobW/HypB/UreG, 98.0 1.2E-05 2.7E-10 56.1 4.4 109 20-134 3-157 (178)
400 PRK13695 putative NTPase; Prov 97.9 0.00026 5.5E-09 49.2 10.8 22 18-39 1-22 (174)
401 PRK14722 flhF flagellar biosyn 97.9 7.5E-05 1.6E-09 57.8 8.7 118 16-133 136-296 (374)
402 cd03115 SRP The signal recogni 97.9 4.9E-05 1.1E-09 52.7 6.9 67 60-133 82-154 (173)
403 COG1162 Predicted GTPases [Gen 97.9 4.9E-05 1.1E-09 56.7 7.0 87 83-176 78-165 (301)
404 PF03266 NTPase_1: NTPase; In 97.9 4.3E-05 9.4E-10 52.8 5.9 22 19-40 1-22 (168)
405 KOG2484 GTPase [General functi 97.9 1E-05 2.2E-10 61.9 2.8 56 15-70 250-306 (435)
406 COG0523 Putative GTPases (G3E 97.9 0.00034 7.3E-09 53.3 11.0 141 20-170 4-193 (323)
407 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00016 3.4E-09 44.6 7.0 97 20-126 2-99 (99)
408 COG1162 Predicted GTPases [Gen 97.8 2.7E-05 5.8E-10 58.1 3.8 22 19-40 166-187 (301)
409 COG3523 IcmF Type VI protein s 97.7 5.7E-05 1.2E-09 65.8 5.5 113 19-132 127-270 (1188)
410 PF13207 AAA_17: AAA domain; P 97.7 3.1E-05 6.7E-10 50.3 2.9 22 19-40 1-22 (121)
411 PRK11537 putative GTP-binding 97.7 0.00015 3.2E-09 55.3 6.5 21 20-40 7-27 (318)
412 TIGR02475 CobW cobalamin biosy 97.6 0.00022 4.8E-09 54.9 7.0 21 20-40 7-27 (341)
413 PRK14721 flhF flagellar biosyn 97.6 0.00014 3E-09 57.3 5.8 111 16-133 190-341 (420)
414 PRK08118 topology modulation p 97.6 5.2E-05 1.1E-09 52.4 2.8 23 18-40 2-24 (167)
415 PRK12727 flagellar biosynthesi 97.6 0.0004 8.7E-09 56.0 7.8 110 15-133 348-499 (559)
416 COG0563 Adk Adenylate kinase a 97.6 6E-05 1.3E-09 52.6 2.8 23 18-40 1-23 (178)
417 KOG2485 Conserved ATP/GTP bind 97.6 8E-05 1.7E-09 55.5 3.4 56 15-71 141-206 (335)
418 PRK00771 signal recognition pa 97.6 0.0002 4.4E-09 56.7 5.9 109 16-132 94-246 (437)
419 PRK07261 topology modulation p 97.5 6.9E-05 1.5E-09 52.0 2.8 22 19-40 2-23 (171)
420 PRK14723 flhF flagellar biosyn 97.5 0.00026 5.6E-09 59.4 6.4 111 18-133 186-338 (767)
421 PRK05703 flhF flagellar biosyn 97.5 0.00038 8.3E-09 55.1 7.2 109 18-133 222-372 (424)
422 PF13555 AAA_29: P-loop contai 97.5 9.2E-05 2E-09 42.1 2.7 21 19-39 25-45 (62)
423 COG1419 FlhF Flagellar GTP-bin 97.5 0.00033 7.1E-09 54.4 6.4 110 17-133 203-353 (407)
424 PRK12724 flagellar biosynthesi 97.5 0.00019 4E-09 56.3 5.1 111 17-134 223-375 (432)
425 PF13671 AAA_33: AAA domain; P 97.5 8.5E-05 1.8E-09 49.6 2.8 21 20-40 2-22 (143)
426 PRK10867 signal recognition pa 97.5 0.00028 6.1E-09 55.8 6.0 66 60-132 183-254 (433)
427 cd02042 ParA ParA and ParB of 97.5 0.00076 1.7E-08 42.5 7.0 81 20-107 2-83 (104)
428 KOG3347 Predicted nucleotide k 97.5 8.5E-05 1.8E-09 49.7 2.5 26 14-39 4-29 (176)
429 KOG0780 Signal recognition par 97.5 0.00012 2.7E-09 56.1 3.6 67 59-132 182-254 (483)
430 COG1126 GlnQ ABC-type polar am 97.5 9E-05 2E-09 52.7 2.6 27 16-42 27-53 (240)
431 cd03111 CpaE_like This protein 97.5 0.00077 1.7E-08 42.9 6.7 94 20-127 2-106 (106)
432 PRK12723 flagellar biosynthesi 97.4 0.0011 2.4E-08 51.8 8.7 111 17-134 174-328 (388)
433 cd02019 NK Nucleoside/nucleoti 97.4 0.00012 2.6E-09 42.8 2.6 22 20-41 2-23 (69)
434 COG3640 CooC CO dehydrogenase 97.4 0.0016 3.4E-08 47.0 8.2 46 81-131 152-198 (255)
435 TIGR00959 ffh signal recogniti 97.4 0.0008 1.7E-08 53.3 7.5 67 59-132 181-253 (428)
436 cd04178 Nucleostemin_like Nucl 97.4 0.00032 6.9E-09 48.7 4.5 53 86-143 1-55 (172)
437 PRK12726 flagellar biosynthesi 97.4 0.00034 7.4E-09 54.2 5.0 124 16-146 205-371 (407)
438 PF13521 AAA_28: AAA domain; P 97.4 0.00011 2.3E-09 50.5 2.1 22 19-40 1-22 (163)
439 PF00005 ABC_tran: ABC transpo 97.4 0.00017 3.7E-09 47.8 3.0 28 16-43 10-37 (137)
440 PRK06995 flhF flagellar biosyn 97.4 0.00033 7.1E-09 56.1 5.0 23 17-39 256-278 (484)
441 COG1116 TauB ABC-type nitrate/ 97.3 0.00016 3.5E-09 52.4 2.7 25 17-41 29-53 (248)
442 COG1136 SalX ABC-type antimicr 97.3 0.00016 3.5E-09 52.0 2.7 26 16-41 30-55 (226)
443 PRK14530 adenylate kinase; Pro 97.3 0.00018 4E-09 51.7 3.1 23 17-39 3-25 (215)
444 PF13238 AAA_18: AAA domain; P 97.3 0.0002 4.4E-09 46.7 2.7 21 20-40 1-21 (129)
445 cd01130 VirB11-like_ATPase Typ 97.3 0.00042 9.2E-09 48.7 4.4 34 7-41 16-49 (186)
446 KOG2423 Nucleolar GTPase [Gene 97.3 0.00038 8.3E-09 53.7 4.4 82 14-98 304-388 (572)
447 PRK05480 uridine/cytidine kina 97.3 0.00023 5.1E-09 50.9 3.1 26 15-40 4-29 (209)
448 cd02038 FleN-like FleN is a me 97.3 0.00097 2.1E-08 44.6 5.8 97 22-130 5-109 (139)
449 PF03215 Rad17: Rad17 cell cyc 97.3 0.0033 7.2E-08 51.0 9.7 22 19-40 47-68 (519)
450 PRK06217 hypothetical protein; 97.3 0.00024 5.2E-09 49.8 2.8 23 18-40 2-24 (183)
451 smart00382 AAA ATPases associa 97.2 0.00031 6.7E-09 46.1 3.2 27 17-43 2-28 (148)
452 PF03205 MobB: Molybdopterin g 97.2 0.00027 5.9E-09 47.3 2.9 22 19-40 2-23 (140)
453 PF00004 AAA: ATPase family as 97.2 0.00025 5.5E-09 46.5 2.7 22 20-41 1-22 (132)
454 cd03116 MobB Molybdenum is an 97.2 0.00024 5.2E-09 48.6 2.6 51 19-75 3-53 (159)
455 PRK06731 flhF flagellar biosyn 97.2 0.0013 2.9E-08 48.9 6.6 122 17-145 75-239 (270)
456 cd00071 GMPK Guanosine monopho 97.2 0.00027 5.9E-09 47.1 2.7 21 20-40 2-22 (137)
457 cd02023 UMPK Uridine monophosp 97.2 0.00025 5.5E-09 50.2 2.6 21 20-40 2-22 (198)
458 PRK03839 putative kinase; Prov 97.2 0.00029 6.3E-09 49.1 2.8 22 19-40 2-23 (180)
459 PRK10078 ribose 1,5-bisphospho 97.2 0.00031 6.7E-09 49.3 2.9 23 19-41 4-26 (186)
460 TIGR00235 udk uridine kinase. 97.2 0.00031 6.8E-09 50.2 2.9 25 15-39 4-28 (207)
461 cd00009 AAA The AAA+ (ATPases 97.2 0.00062 1.3E-08 45.0 4.2 28 15-42 17-44 (151)
462 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00036 7.9E-09 48.8 3.1 22 17-38 3-24 (188)
463 PRK06547 hypothetical protein; 97.2 0.00065 1.4E-08 47.1 4.2 27 14-40 12-38 (172)
464 PRK08233 hypothetical protein; 97.2 0.00038 8.2E-09 48.5 3.1 24 17-40 3-26 (182)
465 TIGR02322 phosphon_PhnN phosph 97.2 0.00031 6.8E-09 48.9 2.6 22 19-40 3-24 (179)
466 PF07693 KAP_NTPase: KAP famil 97.2 0.00047 1E-08 52.5 3.8 36 4-39 7-42 (325)
467 cd02036 MinD Bacterial cell di 97.2 0.0092 2E-07 41.2 10.0 65 62-132 64-128 (179)
468 PF04665 Pox_A32: Poxvirus A32 97.2 0.00038 8.2E-09 50.7 3.1 26 15-40 11-36 (241)
469 PRK01889 GTPase RsgA; Reviewed 97.2 0.00053 1.2E-08 53.1 4.1 25 17-41 195-219 (356)
470 TIGR00554 panK_bact pantothena 97.2 0.00052 1.1E-08 51.5 3.8 24 15-38 60-83 (290)
471 cd02025 PanK Pantothenate kina 97.1 0.0003 6.6E-09 50.8 2.5 21 20-40 2-22 (220)
472 PRK14531 adenylate kinase; Pro 97.1 0.0004 8.7E-09 48.7 3.0 23 18-40 3-25 (183)
473 PRK13949 shikimate kinase; Pro 97.1 0.00039 8.5E-09 48.1 2.8 21 19-39 3-23 (169)
474 COG3840 ThiQ ABC-type thiamine 97.1 0.00041 8.8E-09 48.2 2.7 26 16-41 24-49 (231)
475 PRK13851 type IV secretion sys 97.1 0.00065 1.4E-08 52.3 4.1 27 15-41 160-186 (344)
476 COG0541 Ffh Signal recognition 97.1 0.0037 8E-08 49.0 8.2 110 16-132 99-253 (451)
477 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00041 8.9E-09 44.1 2.5 22 17-38 15-36 (107)
478 TIGR03263 guanyl_kin guanylate 97.1 0.0004 8.6E-09 48.4 2.7 23 19-41 3-25 (180)
479 PRK14532 adenylate kinase; Pro 97.1 0.00042 9.1E-09 48.7 2.8 22 19-40 2-23 (188)
480 PF13191 AAA_16: AAA ATPase do 97.1 0.00038 8.1E-09 48.5 2.6 26 14-39 21-46 (185)
481 COG1936 Predicted nucleotide k 97.1 0.00043 9.4E-09 47.5 2.7 21 18-38 1-21 (180)
482 PF07728 AAA_5: AAA domain (dy 97.1 0.00048 1E-08 45.9 2.8 22 19-40 1-22 (139)
483 PRK05439 pantothenate kinase; 97.1 0.00061 1.3E-08 51.6 3.6 32 8-39 77-108 (311)
484 COG3638 ABC-type phosphate/pho 97.1 0.00045 9.8E-09 49.8 2.7 23 17-39 30-52 (258)
485 COG1117 PstB ABC-type phosphat 97.1 0.0004 8.7E-09 49.4 2.3 19 20-38 36-54 (253)
486 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00048 1E-08 48.1 2.7 21 20-40 2-22 (183)
487 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0005 1.1E-08 48.0 2.7 28 15-42 23-50 (177)
488 cd01131 PilT Pilus retraction 97.0 0.00049 1.1E-08 48.9 2.6 22 20-41 4-25 (198)
489 COG1120 FepC ABC-type cobalami 97.0 0.0005 1.1E-08 50.5 2.7 23 17-39 28-50 (258)
490 PRK14738 gmk guanylate kinase; 97.0 0.00061 1.3E-08 48.7 3.1 26 15-40 11-36 (206)
491 cd01428 ADK Adenylate kinase ( 97.0 0.00046 1E-08 48.6 2.5 22 19-40 1-22 (194)
492 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00057 1.2E-08 49.2 2.9 26 16-41 29-54 (218)
493 PF00485 PRK: Phosphoribulokin 97.0 0.00057 1.2E-08 48.3 2.8 20 20-39 2-21 (194)
494 PRK00300 gmk guanylate kinase; 97.0 0.00068 1.5E-08 48.2 3.2 26 16-41 4-29 (205)
495 TIGR00960 3a0501s02 Type II (G 97.0 0.0006 1.3E-08 49.0 2.9 26 16-41 28-53 (216)
496 PRK06696 uridine kinase; Valid 97.0 0.001 2.2E-08 48.1 4.1 26 14-39 19-44 (223)
497 cd03264 ABC_drug_resistance_li 97.0 0.00062 1.3E-08 48.7 2.9 25 16-41 25-49 (211)
498 TIGR01166 cbiO cobalt transpor 97.0 0.00059 1.3E-08 48.0 2.7 27 16-42 17-43 (190)
499 cd03261 ABC_Org_Solvent_Resist 97.0 0.00064 1.4E-08 49.5 2.9 26 16-41 25-50 (235)
500 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00065 1.4E-08 48.6 2.9 26 16-41 26-51 (211)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=3e-39 Score=226.30 Aligned_cols=181 Identities=99% Similarity=1.463 Sum_probs=162.0
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
||+.++++.++.++.+.+||+++|++|||||||++++..+.+....||.+.+...++.+++.+++||+||+++++..|..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 89888888777777788999999999999999999999888877788989888888888999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++++|++|+|+|+++++++.....++...+......++|+++|+||+|+.+....+++...++......+.+.+++|||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999999888888776544467999999999999888778888888877666666778889999
Q ss_pred CCCCCHHHHHHHHHHHhhhcC
Q 030193 161 TSGEGLYEGLDWLSNNIATKA 181 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~~ 181 (181)
++|+|++++|++|.+.+.+||
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~~ 181 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANKA 181 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhcC
Confidence 999999999999999999886
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=6.4e-38 Score=219.80 Aligned_cols=180 Identities=78% Similarity=1.280 Sum_probs=159.3
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
||+.+...+++.+.+..+||+++|++|||||||++++..+.+....||.+..+..++..++.+++||+||+++++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 89888888888888888999999999999999999998888777778888888788888999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++++|++|+|+|+++++++.....++.+.+......++|+++|+||.|+.+....+++...+....++...++++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999888888876544457899999999999776666777777777666667788999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
++|.|++++|++|.+.+.++
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 3
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=2.7e-36 Score=210.42 Aligned_cols=166 Identities=87% Similarity=1.375 Sum_probs=145.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+...+||+++|++|+|||||++++..+.+....||.+..+..+..+.+.+++||+||+++++..+..+++++|++|+|+
T Consensus 9 ~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 44567999999999999999999998877777778888888778888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
|++++.+++...+++...+......++|+++|+||+|+.+....+++...+....+....+.++++||++|.|++++|++
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999988877654467999999999999876666777777776666667788999999999999999999
Q ss_pred HHHHhh
Q 030193 173 LSNNIA 178 (181)
Q Consensus 173 i~~~l~ 178 (181)
|.+.+.
T Consensus 169 l~~~~~ 174 (175)
T smart00177 169 LSNNLK 174 (175)
T ss_pred HHHHhc
Confidence 988754
No 4
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=3.9e-36 Score=208.30 Aligned_cols=164 Identities=76% Similarity=1.285 Sum_probs=142.4
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++...++|+++|++|+|||||++++....+....||.+.....+...++.+++||++|+++++..+..+++++|++++|
T Consensus 4 ~~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 34456799999999999999999999988877777888888777778889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+|++++.++.....++.+.+......++|+++|+||+|+.+....+++.............+++++|||++|.|++++|+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 99999999999999998887764445789999999999987666677777666555555667899999999999999999
Q ss_pred HHHH
Q 030193 172 WLSN 175 (181)
Q Consensus 172 ~i~~ 175 (181)
+|.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 9865
No 5
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-36 Score=206.34 Aligned_cols=161 Identities=20% Similarity=0.380 Sum_probs=133.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE----EEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||.|+.||..+.|. ++..|+++++.. ++.+.++++||||+||++|++...+||+++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 67899999999999999999999999987 678888877643 3446689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccCCcceE-EEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWY-IQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~ 167 (181)
+|||+++.+||.++..|+.++-+ ....++|.++|+||+|+.+..... +....+ +...+++ ++|+||+++.|++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~-~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~f----a~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDR-YASENVPKLLVGNKCDLTEKRVVSTEEAQEF----ADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhh-hccCCCCeEEEeeccccHhheecCHHHHHHH----HHhcCCcceeecccCCccCHH
Confidence 99999999999999998887644 444689999999999997643211 111112 2223445 8999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
+.|..+...+..+
T Consensus 162 ~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 162 DAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877643
No 6
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=3.1e-35 Score=202.10 Aligned_cols=158 Identities=93% Similarity=1.436 Sum_probs=138.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+||+++|++|||||||++++..+.+....||.+.....+....+.+++||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999888877778888888777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.++....+++.+.+......++|+++++||+|+.+....+++...+....+..+.+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999998888876544456899999999999766556666666666666667788999999999999999999864
No 7
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=1.6e-34 Score=201.34 Aligned_cols=173 Identities=55% Similarity=1.001 Sum_probs=158.6
Q ss_pred HHHHHHhhhc-cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccc
Q 030193 5 FTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 83 (181)
|++++++... .+..+|+++|+.||||||+++++.........||.+++...+...++.+++||.+|+..++..|+.|++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 3456666665 889999999999999999999999988878899999999999999999999999999999999999999
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC-CcceEEEEcccCC
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~ 162 (181)
++|++|||+|.++.+.+....+.+.+.+......++|+++++||+|+.+....+++...+.+..+. .+.+.++.||+.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999887766789999999999999888888998888877776 7789999999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
|+|+.+.++||.+++
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999864
No 8
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-36 Score=202.74 Aligned_cols=163 Identities=20% Similarity=0.374 Sum_probs=139.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC--CEEEEEEEcCCCCCcccccccccccccEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.-+.+|++++|+.++||||||+++..+.|. ++-+|+++++. ++.+. .+++++|||+|||+|+.+.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 356799999999999999999999999998 56788887763 34444 58999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|||+++..+|++..+|+.....+....++.+++|+||.||.++. ++....+...++..+..|+++||+.|.|+++
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr---qvs~eEg~~kAkel~a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR---QVSIEEGERKAKELNAEFIETSAKAGENVKQ 175 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh---hhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence 9999999999999999999999888776678999999999998863 3333333344555566899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|..|..++..
T Consensus 176 lFrrIaa~l~~ 186 (221)
T KOG0094|consen 176 LFRRIAAALPG 186 (221)
T ss_pred HHHHHHHhccC
Confidence 99999887754
No 9
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-35 Score=197.08 Aligned_cols=180 Identities=83% Similarity=1.311 Sum_probs=173.6
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
||..++++++..+.....+|+++|--++||||++.+|...++.+..||.++++..+.+++.++++||.+|++.++..|.+
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
|+++.+++|||+|.++.+.+....+.+.+++......+.|+++++||.|+....+..++...+.+..+.++.|.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999887788999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
.+|+|+.+.++|+.+.+..+
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999988765
No 10
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-35 Score=198.85 Aligned_cols=159 Identities=21% Similarity=0.406 Sum_probs=134.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccceEEE--EEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~~--~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|+.++|||||+-|+..+.|.+. .||++..+.. +... .+++.||||+|+++|..+.++|+++++.+|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4689999999999999999999999999865 7899877654 3333 489999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|||+++.+||.....|+.+.-.+.. +++-+.+||||+|+.+. ...++.. ..++.++..+||+||+++.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~-----~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQ-----AYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHH-----HHHHhcCCEEEEEecccccCHH
Confidence 99999999999999999888766544 77888899999999873 2333322 2234466789999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|..|.+.+..
T Consensus 157 ~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 157 EIFQAIAEKLPC 168 (200)
T ss_pred HHHHHHHHhccC
Confidence 999999998764
No 11
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=2.6e-34 Score=189.47 Aligned_cols=179 Identities=45% Similarity=0.831 Sum_probs=162.7
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
|| +++-+.+.-.+++.++|+++|..||||||++++|.+.......||.++++....++++++++||.+|+...+..|+.
T Consensus 1 mg-~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 1 MG-LLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKN 79 (185)
T ss_pred Cc-HHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHH
Confidence 66 44444444446789999999999999999999999999888899999999999999999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEcc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTC 159 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 159 (181)
|+.+.|++|||+|.+++.+++.....+...+......+.|+++++||.|+..+...+++...+.+..+ +...|+++.||
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 99999999999999999999999998888888777788999999999999988888999988887777 77899999999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 030193 160 ATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~~ 180 (181)
+.+|+++.+.++|+++.+.++
T Consensus 160 ~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred ccccccHHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 12
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=3.7e-34 Score=199.31 Aligned_cols=166 Identities=49% Similarity=0.891 Sum_probs=141.0
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+++..++|+++|++|||||||++++.+..+....||.++....+...++.+++||+||++.++..+..+++.+|+++
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 33445678999999999999999999999987767778888777777788899999999999999989999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|+|++++.++.....++...+......++|+++|+||+|+......+++...+.....+...++++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 99999999999988888888776544468999999999999776566666666655444556789999999999999999
Q ss_pred HHHHHH
Q 030193 170 LDWLSN 175 (181)
Q Consensus 170 ~~~i~~ 175 (181)
|+++.+
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 999864
No 13
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=1e-33 Score=197.32 Aligned_cols=170 Identities=54% Similarity=0.975 Sum_probs=144.4
Q ss_pred HHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccc
Q 030193 6 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 85 (181)
.++.+.......++|+++|++|+|||||++++..+.+....||.+..+..+...+..+.+||+||++++...+..+++.+
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcC
Confidence 34444443455789999999999999999999988887778888888888888899999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
|++++|+|+++++++.....++..++......++|+++++||+|+......+++.+.+.....+..++++++|||++|.|
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g 163 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEG 163 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence 99999999999989988888888887654446799999999999976556667777666555555678899999999999
Q ss_pred HHHHHHHHHH
Q 030193 166 LYEGLDWLSN 175 (181)
Q Consensus 166 i~~~~~~i~~ 175 (181)
+++++++|.+
T Consensus 164 i~e~~~~l~~ 173 (174)
T cd04153 164 LPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 14
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=1e-33 Score=196.39 Aligned_cols=161 Identities=62% Similarity=1.075 Sum_probs=137.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
||+++|++|||||||++++.+..+..+.||.+..+..++..++.+++||+||+++++..+..+++.+|++++|+|++++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999988777788888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
++.....|+...+......+.|+++|+||+|+.+....+++......... .++.+.+++|||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999988887654456899999999999766566666555443322 23356788999999999999999999876
Q ss_pred hh
Q 030193 178 AT 179 (181)
Q Consensus 178 ~~ 179 (181)
.+
T Consensus 161 ~~ 162 (169)
T cd04158 161 VA 162 (169)
T ss_pred hh
Confidence 54
No 15
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=3e-33 Score=191.94 Aligned_cols=157 Identities=66% Similarity=1.132 Sum_probs=134.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
||+++|++++|||||++++....+....||.+.....+++.+..+++||+||++++...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888777778888887788888899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
++.....++...+......++|+++|+||+|+.+.....++...+........+++++++||++|.|++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88877787877766544457999999999999766555666665654444455678999999999999999999865
No 16
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=9.2e-33 Score=194.04 Aligned_cols=171 Identities=34% Similarity=0.607 Sum_probs=144.9
Q ss_pred HHHHHHhhhc--cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccccc
Q 030193 5 FTKLFSKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82 (181)
Q Consensus 5 ~~~~~~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 82 (181)
|.++++ ... .+.++|+++|++|||||||++++.+..+....||.+.....+...++++++||+||+..++..+..++
T Consensus 4 ~~~~~~-~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 82 (184)
T smart00178 4 FYDILA-SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF 82 (184)
T ss_pred HHHHHH-HhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 445555 442 77899999999999999999999998876666777777777778889999999999999999999999
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC-------CcceEE
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYI 155 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 155 (181)
.++|++++|+|++++.++.....++.+++......++|+++|+||+|+......+++...+.+.... .+.+.+
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 9999999999999999998888888887765444679999999999998777788888877655432 246779
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q 030193 156 QSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 156 ~~~S~~~~~~i~~~~~~i~~~ 176 (181)
++|||+++.|++++++||.++
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999875
No 17
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-34 Score=198.25 Aligned_cols=164 Identities=23% Similarity=0.402 Sum_probs=135.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..+..+||+++|+++||||+++.+|..+.|. +...|.++++ ..+... .+.+++|||+|+++|+....+|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 4477899999999999999999999999987 4556777665 445444 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+++|||+++..+|+++.. |.+.+.++....+|.++||||+|+..+ .++....+...+...+++++||||++|.||+
T Consensus 88 i~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred eEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 999999999999999999 555566666678999999999998763 2233333334444556789999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
++|-.+.+.+..+
T Consensus 164 eaF~~La~~i~~k 176 (207)
T KOG0078|consen 164 EAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 18
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=1.7e-32 Score=188.73 Aligned_cols=157 Identities=50% Similarity=0.858 Sum_probs=130.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc--ccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
+|+++|++|||||||++++.+..+ ....||.+.....+...++.+++||+||++++...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 345788887777777888999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 97 RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
+.++.....++..++.... ..++|+++|+||+|+.+....+++...+.........++++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9888888777776655322 24799999999999987655566665555443344467899999999999999999986
Q ss_pred H
Q 030193 175 N 175 (181)
Q Consensus 175 ~ 175 (181)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
No 19
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.9e-33 Score=198.60 Aligned_cols=163 Identities=20% Similarity=0.287 Sum_probs=124.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE---EEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
..+||+++|++|+|||||+.++..+.+. .+.||.+..+. .++...+.+++|||+|+++|+..++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4589999999999999999999999885 55677765443 2333457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhh--------hCCCccCCcc-eEEEEcccC
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDK--------LGLHSLRQRH-WYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~S~~ 161 (181)
||++++.+|+.+...|...+.... .++|+++|+||+|+.+... .+.+... .....++..+ +++++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 999999999999765554444322 5799999999999965422 1111110 0111112233 589999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+|.|++++|+++.+.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987654
No 20
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=5.3e-33 Score=197.22 Aligned_cols=156 Identities=20% Similarity=0.376 Sum_probs=122.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.|+++|+.|||||||++++..+.|.. +.+|.+..+ ..+...+ +.+++||++|+++|+..+..+++++|++|+|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999999998864 456665443 3455544 889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccCC-cceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~ 171 (181)
++++++|+.+..|+.. +.+....+.|+++|+||+|+.+..... +....+ ++. .++.+++|||++|.|++++|+
T Consensus 82 vtd~~Sf~~l~~w~~~-i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~----a~~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 82 ITKKETFDDLPKWMKM-IDKYASEDAELLLVGNKLDCETDREISRQQGEKF----AQQITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred CcCHHHHHHHHHHHHH-HHHhCCCCCcEEEEEECcccccccccCHHHHHHH----HHhcCCCEEEEecCCCCCCHHHHHH
Confidence 9999999999877654 444444679999999999996432211 111111 111 245799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987754
No 21
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=2.9e-32 Score=188.72 Aligned_cols=157 Identities=36% Similarity=0.615 Sum_probs=135.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
+|+++|++|||||||++++.+.....+.||.+.....+...+..+++||+||++.++..+..+++++|++++|+|++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999874446678888887888889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC---CcceEEEEcccCCC------CCHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR---QRHWYIQSTCATSG------EGLYEG 169 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~------~~i~~~ 169 (181)
+++....++..+.......++|+++|+||+|+.+.....++...+....+. ...+++++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999998888888765444679999999999998877777777766655442 24578999999998 899999
Q ss_pred HHHHHH
Q 030193 170 LDWLSN 175 (181)
Q Consensus 170 ~~~i~~ 175 (181)
|+||.+
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 22
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=7.1e-33 Score=198.67 Aligned_cols=160 Identities=18% Similarity=0.309 Sum_probs=128.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+||+++|.+|+|||||+++|.++.+....||.+..+.......+.+.+||++|+++|...+..+++.+|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987778888877666666778999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---------------------CCHhH---HHhhhCCC------c
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---------------------MNAAE---ITDKLGLH------S 147 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~---------------------~~~~~---~~~~~~~~------~ 147 (181)
++|..+..||..+... ...++|+++|+||+|+.+. ...++ +.+..... .
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999998887653 2357899999999998651 11111 11111100 0
Q ss_pred cCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.....++|+||||++|.|++++|..+.+.+.
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0011257999999999999999999998765
No 23
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.2e-33 Score=194.37 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=124.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++.+..+. ...||.+..+. .+.. ..+.+++||++|++++...+..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 579999999999999999999998886 45667664443 3333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++.+|.....|+..+.......++|+++|+||+|+.+... .++.. ...+..++++++|||++|.|++++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-----~~a~~~~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-----NLAREFNCPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH-----HHHHHhCCEEEEEecCCCCCHHHHH
Confidence 9999999999987654443322335799999999999865322 22211 1122345689999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
+++.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987654
No 24
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=3.5e-32 Score=187.81 Aligned_cols=154 Identities=40% Similarity=0.684 Sum_probs=132.7
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
|+++|++|||||||+++|.+..+. .+.||.+.....++.++.++++||++|+++++..+..+++++|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 789999999999999999988765 5678888877778888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEcccCC------CCCHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATS------GEGLYEGLD 171 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~------~~~i~~~~~ 171 (181)
++.....|+..+.... +++|+++|+||+|+......+++...+....+ ++.++++++|||++ ++|++++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 9998888888776543 57999999999999877666776666555544 55688999999888 999999999
Q ss_pred HHHH
Q 030193 172 WLSN 175 (181)
Q Consensus 172 ~i~~ 175 (181)
.+..
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8864
No 25
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=5.3e-32 Score=185.67 Aligned_cols=157 Identities=69% Similarity=1.199 Sum_probs=139.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
||+++|++|||||||++++.+..+....+|.+.....+.+.+..+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777788888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
++.....++..+.......+.|+++|+||+|+......+++...+.........++++++|+++|.|+++++++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999998888877655568999999999999877667777776665545556789999999999999999999875
No 26
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-32 Score=173.93 Aligned_cols=179 Identities=70% Similarity=1.198 Sum_probs=172.0
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
||.-+++++.+.+..+..+|+.+|-.++||||++..|.-.......||.++++..+.++++.|++||.+|++..+..|.+
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 89999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
|+....++|||+|.++...++..++.+.+++........|+++.+||.|++++...+++...+.+..++.+.|.+.++|+
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999887788999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
.+|.|+.+-+.|+.+.+..
T Consensus 161 ~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccchhHHHHHHHHHhhccC
Confidence 9999999999999987654
No 27
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=6.9e-32 Score=189.47 Aligned_cols=164 Identities=50% Similarity=0.879 Sum_probs=132.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEE-----CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|||||||++++....+....||.+........ .++.+++|||||++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999998887667777766544333 46899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC-CcceEEEEcccCCCCCHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~~ 169 (181)
|+|++++.++.....++..+.......++|+++|+||+|+......+++.......... ..+++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 99999988888887777766654333579999999999987655555555544433222 23467899999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
+++|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 28
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.3e-33 Score=195.49 Aligned_cols=158 Identities=17% Similarity=0.255 Sum_probs=125.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|+.|+|||||+.+|.++.+.. +.++.+..+ ..+...+ +.+++||++|+++|...+..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 356899999999999999999999987763 334544433 3344444 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|||++++.+|+.+..|+..+... . ++.|+++|+||+|+.... ..++.+.. ++..++++++|||++|.|++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~-~-~~~piilVGNK~DL~~~~~v~~~~~~~~-----a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEH-A-PGVPKILVGNRLHLAFKRQVATEQAQAY-----AERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECccchhccCCCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence 999999999999998877776443 2 589999999999996532 22222221 12345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+++.+.+..
T Consensus 157 ~~F~~l~~~i~~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 29
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=1.1e-31 Score=189.51 Aligned_cols=163 Identities=36% Similarity=0.660 Sum_probs=139.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
.+..+|+++|++|||||||++++.+..+..+.||.+.....+...+..+++||+||+++++..+..+++.++++++|+|+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~ 96 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDA 96 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEEC
Confidence 56899999999999999999999998877777788777778888889999999999999998889999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-----------CCcceEEEEcccCCC
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRHWYIQSTCATSG 163 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~S~~~~ 163 (181)
++..++.....++...+......+.|+++++||+|+......+++...+..... ..+.+++++|||++|
T Consensus 97 ~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 176 (190)
T cd00879 97 ADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKR 176 (190)
T ss_pred CcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCC
Confidence 999899888888888877555567999999999999876677777776654322 124578999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++|++|.+.+
T Consensus 177 ~gv~e~~~~l~~~~ 190 (190)
T cd00879 177 QGYGEAFRWLSQYL 190 (190)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998754
No 30
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=184.39 Aligned_cols=162 Identities=24% Similarity=0.398 Sum_probs=133.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCc-ccceE----EEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t-~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||+.+|..+.|....|+ ++.++ ..++...+++.||||+|+++|+.+.++|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 4579999999999999999999999999876664 66544 345566789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|||++.+++|.+.+.|+.++-.--..+++..++|+||+|... ...+.++.++.+++....-++||||++.+|+...
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999977666543222225677899999999542 3445566667777777778999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+.++.++.+
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 31
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.9e-32 Score=189.81 Aligned_cols=160 Identities=17% Similarity=0.208 Sum_probs=122.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEE--ECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+.++..+.+. .+.||.+..+. .+. ...+++++|||+|+++|+..+..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999987 46777764432 233 345889999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCCccCCcce-EEEEcccCCCC
Q 030193 94 SNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQRHW-YIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (181)
++++.+|+++. .|+..+ .... .++|+++|+||+|+.+... ...+........++..+. +++||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i-~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPEL-RHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHH-HHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999985 555544 4332 4799999999999965311 001111111112223344 68999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030193 165 GLYEGLDWLSNNIAT 179 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~ 179 (181)
|++++|+.+.+.+..
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987654
No 32
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.1e-32 Score=191.55 Aligned_cols=164 Identities=15% Similarity=0.212 Sum_probs=123.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EE--EECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||++++..+.+. .+.||.+..+. .+ +...+.+++|||+|+++|...++.+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999886 45677764442 23 3345789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCccCCcc-eEEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRH-WYIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~S~ 160 (181)
|||++++.+|+.+...|...+.... ++.|+++|+||+|+.+... ...+....+...++..+ .+|+||||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 9999999999998544444444333 5799999999999854210 00111111222223344 37999999
Q ss_pred CCCCC-HHHHHHHHHHHhhh
Q 030193 161 TSGEG-LYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~-i~~~~~~i~~~l~~ 179 (181)
++|.| ++++|+.+.+....
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999986544
No 33
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.5e-32 Score=191.50 Aligned_cols=159 Identities=17% Similarity=0.207 Sum_probs=121.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++.++.+. .+.||.+..+. .+...+ +++++||++|+++|...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999885 56777765443 344444 789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHh--------hhCCCccCCcc-eEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITD--------KLGLHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~~~--------~~~~~~~~~~~-~~~~~~S~~~~ 163 (181)
++++++|+.+..+|...+.... +++|+++|+||+|+.+.....+ +.. .......+..+ ++|++|||++|
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 9999999999865555554433 5799999999999865322111 100 00001112233 68999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++|+.++++.
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998753
No 34
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=7.4e-32 Score=185.26 Aligned_cols=157 Identities=49% Similarity=0.918 Sum_probs=131.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+|+++|++|+|||||++++.+..+....||.+.....+.. ..+.+++||+||++.+...+..+++.+|++++|+|+.++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887777888777666654 357999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.++.....++...+......+.|+++|+||+|+......+++...+....+ ...++++++|||++|.|+++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 889998888888876544457999999999999765556666665544333 235678999999999999999999864
No 35
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3e-32 Score=190.27 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=120.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EE--EECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++||+++|++|+|||||++++.++.+. .+.||.+..+. .+ +...+.+++|||+|+++|...++.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999999886 45677654432 23 334578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-H--------hHHHhhhCCCccCCcce-EEEEcccCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-A--------AEITDKLGLHSLRQRHW-YIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~--------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 162 (181)
|++++++|+.+...|...+.+.. ++.|+++|+||+|+.+... . ..+........++..+. +|+||||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999997443444444333 5799999999999854210 0 00111111222233443 799999999
Q ss_pred CCC-HHHHHHHHHHHhh
Q 030193 163 GEG-LYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~-i~~~~~~i~~~l~ 178 (181)
|+| ++++|..+.++..
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998644
No 36
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=1.5e-31 Score=185.95 Aligned_cols=163 Identities=50% Similarity=0.863 Sum_probs=141.1
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+..+.++|+++|++|+|||||++++.+..+....||.+.....+...+..+.+||++|+..+...+..+++.+|++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 34668999999999999999999999988777778888887788888999999999999988888888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
|+.+..++.....++...+......++|+++++||+|+.+....+++...+.........++++++||++|+|+++++++
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 99998888888888877766544457999999999999877667777777776666666778899999999999999999
Q ss_pred HHH
Q 030193 173 LSN 175 (181)
Q Consensus 173 i~~ 175 (181)
|.+
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 975
No 37
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3e-32 Score=188.48 Aligned_cols=157 Identities=20% Similarity=0.344 Sum_probs=124.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.++.+.. ..+|.+..+. .+.. ..+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999998764 3456554442 2333 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
||++++.+|+.+..|+...... ..++.|+++|+||+|+..... .++.... ++..++++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence 9999999999998888766443 235789999999999975432 2222221 1223568999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|..+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 38
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.7e-32 Score=191.77 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=126.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE---EEEECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||++++.++.+. ...||.+..+. .++...+.+++|||||++++...+..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45799999999999999999999998876 45566655443 233445788999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++++|+....|+..+.......++|+++|+||+|+.+.. ..++... + .+..+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE-L----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999998888777654444578999999999986432 2212111 1 112245799999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|+++.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 39
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.8e-32 Score=196.67 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=122.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-E--EECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|||||||+++|.++.|. .+.||.+..+.. + +...+.++||||+|+++|...++.+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 35789999999999999999999999887 456777655432 2 3345889999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCccCCcce-EEEEcc
Q 030193 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTC 159 (181)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (181)
|||++++.+|... ..|+..+ .... ++.|+++|+||+|+.+... ...+........++..++ +|++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i-~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEI-MDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHH-HHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999986 4555444 3322 4789999999999864210 011111122222333455 689999
Q ss_pred cCCCC-CHHHHHHHHHHHhhh
Q 030193 160 ATSGE-GLYEGLDWLSNNIAT 179 (181)
Q Consensus 160 ~~~~~-~i~~~~~~i~~~l~~ 179 (181)
|++|. |++++|..+...+.+
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHH
Confidence 99997 899999999887643
No 40
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.3e-32 Score=185.16 Aligned_cols=162 Identities=22% Similarity=0.360 Sum_probs=132.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE----EEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+|+.++|+.|+|||+|+.+|+...|.. ...|.++.+ ..++.+.+++++|||+|++.|++...+||+.+.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 457899999999999999999999999874 455777655 345667799999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|||+++.++|..+..|+.+..+.. ..+..+++++||+|+.... ++.++.+..++++.+..++++||++++|++++
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999876653 3689999999999996542 22222233333334456889999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
|..+...+..+
T Consensus 160 F~nta~~Iy~~ 170 (216)
T KOG0098|consen 160 FINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHH
Confidence 99888877643
No 41
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.98 E-value=3e-32 Score=183.14 Aligned_cols=161 Identities=14% Similarity=0.278 Sum_probs=131.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE----EEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+.-.||.++|++|+|||||+|++.++.|. .+..|++..+. .++.+-+.+++|||+|+++|+++...+++.+|..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 55689999999999999999999999988 46678876553 24445578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCC---CCeEEEEEeCCCCCCC---CCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+|||+.++.+|+++..|-.+++.+.... .-|.|++|||+|+... ....+-.+.... .+.++||||+|||+.
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK---SKGNIPYFETSAKEA 163 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH---hcCCceeEEeccccc
Confidence 9999999999999999999988875532 3699999999998652 222222222221 134689999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030193 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~ 178 (181)
.|++++|+.+.+...
T Consensus 164 ~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 164 TNVDEAFEEIARRAL 178 (210)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999988654
No 42
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.98 E-value=1.1e-31 Score=184.77 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=121.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccce-EEEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|||||||++++.++.+.. ..||.+.. ...+... .+.+++||+||+++|...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3799999999999999999999888763 45555422 2234344 467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++.+|+....|+..+.......+.|+++|+||+|+.+.... .+....+. +..+.+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999888877765444467999999999998653221 11111111 11235899999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
++.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 43
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.98 E-value=6.1e-32 Score=189.16 Aligned_cols=160 Identities=20% Similarity=0.410 Sum_probs=125.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE------------CCEEEEEEEcCCCCCccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY------------KNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~------------~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
..+||+++|++|||||||++++.+..+. ...+|.+.... .+.. ..+.+++||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4689999999999999999999998876 34566654432 2322 2478999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++++|++++|||++++++|..+..|+..+.......+.|+++|+||+|+.+.. ..++... + .+..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA-L----ADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH-H----HHHcCCeEEEE
Confidence 999999999999999999999998888776554444578999999999996532 2222211 1 11123579999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhc
Q 030193 159 CATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
||++|.|++++|+++.+.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999887654
No 44
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.98 E-value=4.4e-32 Score=187.20 Aligned_cols=157 Identities=21% Similarity=0.297 Sum_probs=124.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++..+.+.. ..||.+..+. .+... .+.+++||+||++++...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 3689999999999999999999887753 4556553322 33333 567889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++.+|+...+|+..+.......+.|+++|+||+|+..... .++. ..+ .+..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNL----ARQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHH----HHHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999998888887654456899999999999975422 1111 111 11223579999999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
.++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 45
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.3e-32 Score=186.30 Aligned_cols=161 Identities=20% Similarity=0.375 Sum_probs=133.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE----EEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+.-+||.++|++++|||-|+.+|..++|. +..+|+++.+.. ++.+.++.+||||+|+++|++...+|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 67789999999999999999999999997 667788877644 4556689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|||+++..+|+++..|+.+.... ...++++++|+||+||.+.. .+..+.....++.++..++++||.++.|++.+
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lr---aV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLR---AVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhcc---ccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 999999999999999888776554 44799999999999997632 11122223333445567899999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+.+...+..
T Consensus 168 F~~~l~~I~~ 177 (222)
T KOG0087|consen 168 FERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 46
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.98 E-value=5.4e-31 Score=182.21 Aligned_cols=155 Identities=22% Similarity=0.377 Sum_probs=123.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEE----CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||+++++.+.+. ...||.+........ ..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999987765 456677665544332 3578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
|++++.+++.+..|+..+.... .++|+++|+||+|+.......+..+ + .+...++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-F----HRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-H----HHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999887777665432 2799999999999974432222211 1 1223567999999999999999999
Q ss_pred HHHHhhh
Q 030193 173 LSNNIAT 179 (181)
Q Consensus 173 i~~~l~~ 179 (181)
|.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9987753
No 47
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.98 E-value=2e-31 Score=183.08 Aligned_cols=156 Identities=20% Similarity=0.282 Sum_probs=122.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++.++.+. ...||.+..+ ..+... .+.+++||++|++++...+..++++++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999998875 4455655333 223333 367889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|+++..+|+....|+..+.......+.|+++|+||+|+.+... .++..... +..+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999888887776554446799999999999875332 22222211 12245799999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
No 48
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.98 E-value=5.3e-31 Score=182.22 Aligned_cols=157 Identities=38% Similarity=0.731 Sum_probs=129.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc-------ccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+|+++|++|+|||||++++.+... ....||.+.....+.+.+..+++||+||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999976432 1345677777778888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--cCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|+.+++++.....++...+......++|+++++||+|+......+++...+.... ....+++++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99998888888888888877765556899999999999977666566555443321 2334678999999999999999
Q ss_pred HHHHHH
Q 030193 170 LDWLSN 175 (181)
Q Consensus 170 ~~~i~~ 175 (181)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999865
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.98 E-value=2.8e-31 Score=191.04 Aligned_cols=156 Identities=23% Similarity=0.359 Sum_probs=126.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEE----CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|||||||+++++.+.+. .+.||.+..+....+ ..+.+++||++|+++|...+..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67899999999999999999999988876 457777766544332 4579999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|||++++.+|+.+..|+..+... ..+.|+++|+||+|+..... .+++ . + .+..+++|++|||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~-~----~~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-T-F----HRKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-H-H----HHhcCCEEEEcCCCCCCCHHH
Confidence 999999999999998877766543 25799999999999864322 2222 1 1 123456899999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
+|++|.+.+.
T Consensus 163 ~f~~l~~~~~ 172 (219)
T PLN03071 163 PFLYLARKLA 172 (219)
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 50
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=4.4e-31 Score=187.97 Aligned_cols=157 Identities=22% Similarity=0.341 Sum_probs=123.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE---CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|||||||+++|.+..+. .+.||.+..+ ..+.. ..+.+++||++|++++...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999998876 4567776543 23443 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCccCCcc-eEEEEcccCCCCC
Q 030193 92 VDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 165 (181)
||++++.+|+.+..|+..+... ....++|+++|+||+|+.+ ....+++...... .+ .++++|||++|.|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE-----NGFIGWFETSAKEGIN 155 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH-----cCCceEEEEeCCCCCC
Confidence 9999999999998777655332 1235789999999999973 2333333322211 12 4789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++|+++.+.+.+
T Consensus 156 v~e~f~~l~~~l~~ 169 (201)
T cd04107 156 IEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 51
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=2.4e-31 Score=190.94 Aligned_cols=162 Identities=16% Similarity=0.212 Sum_probs=124.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEE--ECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++||+++|++|+|||||+++|.++.+. .+.||....+. .+. ...+.+.+||++|++.|...++.+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 479999999999999999999998877 56777765553 233 34578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhH--------HHhhhCCCccCCcc-eEEEEcccCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE--------ITDKLGLHSLRQRH-WYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (181)
|++++++|+.+..+|...+.... ++.|+++|+||+|+.+... ..+ +....+...++..+ .+|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999999877766555433 6799999999999965311 111 11111222222334 4899999999
Q ss_pred CCC-HHHHHHHHHHHhhh
Q 030193 163 GEG-LYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~-i~~~~~~i~~~l~~ 179 (181)
+.| ++++|+.+..+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 160 SERSVRDVFHVATVASLG 177 (222)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 885 99999999886543
No 52
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=1.3e-31 Score=188.98 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=121.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EE--EECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.||+++|++|+|||||+++|.++.+.. +.||.+..+. .+ +...+.+++||++|+++|...+..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 379999999999999999999998864 4566654432 22 2234789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh---------hCCCccCCc-ceEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK---------LGLHSLRQR-HWYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~S~~~~ 163 (181)
++++.+|+.....|...+.... .+.|+++|+||+|+.+.....+.... .....+... .+++++|||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 9999999988754444444332 57999999999999764332221111 111111122 267999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030193 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~ 178 (181)
.|++++|+++.+.+.
T Consensus 160 ~~v~e~f~~l~~~~~ 174 (189)
T cd04134 160 RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998765
No 53
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=4.7e-31 Score=184.95 Aligned_cols=159 Identities=18% Similarity=0.281 Sum_probs=122.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||+++|.++.+.. +.||.+..+. .+...+ +.+++||++|+++|...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999998874 6788876653 444444 78999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|++++++|..+..|+....... ....| ++|+||+|+...... +.+. .......+..++++++|||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999988877665432 23567 678999999642111 1111 1111112233468999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 54
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=2.4e-31 Score=183.79 Aligned_cols=157 Identities=19% Similarity=0.366 Sum_probs=123.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+. .+.||.+..+ ..+.. ..+.+++||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 68999999999999999999999886 4466665433 23333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++++++.+..|+..+. +.....+|+++|+||+|+.+... .++.... .+..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~-~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIK-TYSWDNAQVILVGNKCDMEDERVVSSERGRQL-----ADQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHH-HhCCCCCCEEEEEECcccCcccccCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999888776653 33335789999999999965432 2222111 11234579999999999999999
Q ss_pred HHHHHHhhhc
Q 030193 171 DWLSNNIATK 180 (181)
Q Consensus 171 ~~i~~~l~~~ 180 (181)
+++.+.+.+|
T Consensus 156 ~~l~~~~~~~ 165 (165)
T cd01865 156 ERLVDIICDK 165 (165)
T ss_pred HHHHHHHHhC
Confidence 9999987654
No 55
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=5.3e-31 Score=182.04 Aligned_cols=156 Identities=26% Similarity=0.416 Sum_probs=122.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||+++++++.+. .+.||.+..+ ..+.. ..+.+++||++|++.+...+..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999876 4566666543 23433 4578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC----CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
|++++.+++....|+..+..... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999988887776654332 1468999999999987422 222222211 122357899999999999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
++++++|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 56
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=2.3e-31 Score=183.40 Aligned_cols=157 Identities=17% Similarity=0.283 Sum_probs=121.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccc-ceEEEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++||+++|++|+|||||++++.++.+.. ..+|.+ .....+.. ....+++||+||+++|...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999988764 345543 22223333 3467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++.+|.....|+..+.......++|+++|+||+|+.+..... +....+. +..++++++|||++|.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999998887777654444679999999999986432211 1111111 11235789999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=2.5e-31 Score=184.06 Aligned_cols=159 Identities=22% Similarity=0.376 Sum_probs=125.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+||+++|++|+|||||++++.+..+.. +.||.+... ..+... .+.+++||++|++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999998764 466665443 334333 3689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++++|+.+.+|+..+.. ....++|+++|+||+|+.+.. ..++..... +..+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEE-HASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHH-hCCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999887766544 333579999999999997532 222222211 22345799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030193 169 GLDWLSNNIATK 180 (181)
Q Consensus 169 ~~~~i~~~l~~~ 180 (181)
+|+++.+.+..+
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999988653
No 58
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=6.8e-31 Score=182.99 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=118.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|||||||+.++..+.+. .+.||....+ ..+.. ..+++++|||+|++.+...+..+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 68999999999999999999998876 4556654322 12233 44789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhC--------CCccCCcc-eEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLG--------LHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~--------~~~~~~~~-~~~~~~S~~~~ 163 (181)
++++++|......|...+.... ++.|+++|+||+|+.+.. ..+.+..... ....+..+ .++++|||++|
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 9999999999765555444432 579999999999996432 1111111100 00111223 47899999999
Q ss_pred CCHHHHHHHHHHH
Q 030193 164 EGLYEGLDWLSNN 176 (181)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (181)
.|++++|+.+.+.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 59
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=2.7e-30 Score=176.61 Aligned_cols=156 Identities=36% Similarity=0.684 Sum_probs=133.6
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
|+++|++|+|||||++++.+..+. ...||.+.....+......+.+||+||+..++..+..+++.+|++++|+|+.++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 789999999999999999999876 5678888887777778899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
++.....++..........++|+++|+||+|+.+....+++.............++++++|+++|.|+++++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888776554467899999999998776555555555555544455678999999999999999999865
No 60
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=2.8e-31 Score=183.11 Aligned_cols=157 Identities=20% Similarity=0.307 Sum_probs=121.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|||||||++++.+..+.. ..+|..... ..+.. ..+.+++||+||++++...+..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999988763 344443222 22223 34788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
++++++|+....|+..+.......++|+++|+||+|+.+.. ..++..... +..+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999998887776655444578999999999987532 222222111 11235899999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987653
No 61
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=3e-31 Score=182.80 Aligned_cols=156 Identities=20% Similarity=0.278 Sum_probs=122.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++.+..+.. ..+|.+..+. .... ....+++||+||++++...+..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999887653 3455543322 2233 3468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++.+|+....|+..+.......+.|+++|+||+|+.+... .++... + .+..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQE-L----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHH-H----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999988888776644445789999999999865432 222211 1 11224578999999999999999
Q ss_pred HHHHHHh
Q 030193 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~l 177 (181)
+++.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
No 62
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=3.6e-31 Score=183.76 Aligned_cols=157 Identities=24% Similarity=0.333 Sum_probs=122.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|||||||++++.++.+. .+.||.+..+. .+... .+.+++||+||+++|...+..+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999886 55677765543 33333 4689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+++++++.....|+..+.......++|+++|+||+|+.+.... ++....+ .++.+.+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999888877655433345789999999998653221 1111111 11223478999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999887653
No 63
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=8.6e-31 Score=180.36 Aligned_cols=154 Identities=21% Similarity=0.380 Sum_probs=120.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++|+++|++|+|||||++++.++.+. .+.||.+..+. .+...+ +.+++||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999886 45677765443 344443 68899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++++|+.+..|+...... ...+.|+++|+||.|+...... .+....+ .+..+.++++|||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999998877765433 2247999999999998654321 1111211 112234789999999999999999
Q ss_pred HHHHH
Q 030193 172 WLSNN 176 (181)
Q Consensus 172 ~i~~~ 176 (181)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
No 64
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.4e-31 Score=187.76 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=120.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
||+++|++|+|||||+++|.++.+.. ..||.+..+ ..+... .+.+++||++|+++|...+..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888764 455655332 223333 36789999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+++.+|..+..|+..+..... ..+.|+++|+||+|+.+..... +.... ..+..+++++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~----~~~~~~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA----LARRLGCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH----HHHHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999888776644321 2578999999999986532211 11111 1122345799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+..
T Consensus 157 ~l~~~l~~ 164 (190)
T cd04144 157 TLVRALRQ 164 (190)
T ss_pred HHHHHHHH
Confidence 99987653
No 65
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=9.4e-31 Score=187.41 Aligned_cols=158 Identities=24% Similarity=0.477 Sum_probs=125.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EEEE---CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+||+++|++|+|||||+++|.+..+.. ..||.+..+. .+.. ..+.+++||++|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988764 4566665443 2333 24789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++++|..+..|+..+........+|+++|+||+|+.+... .++. ..+ .+..+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKL----AKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHH----HHHhCCEEEEEeCCCCCCHHH
Confidence 999999999999998888776544334688999999999875322 2222 111 122346899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|++|.+.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 66
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=1.3e-30 Score=180.12 Aligned_cols=157 Identities=21% Similarity=0.379 Sum_probs=123.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.+..+. .+.+|.+..+ ..+... .+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 379999999999999999999998875 3455555433 334443 46889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
||++++++|..+..|+...... ...+.|+++|+||+|+..... .++..... +..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence 9999999999999877765432 235789999999999865432 22222211 123468999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+.+.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 67
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.5e-30 Score=187.02 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=122.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC---CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|+|||||+++|.+..+. .+.||.+..+. .+... .+.+++||++|++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999998876 45677765543 34432 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
||++++++|+.+..|+..+..... ..++|+++|+||+|+.+.. ..++... + .+..+++++++||++|+|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~-~----~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR-F----AQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH-H----HHHcCCEEEEEECCCCCCHH
Confidence 999999999999877666544321 2357899999999996432 1121111 1 11223578899999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 68
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=168.51 Aligned_cols=168 Identities=34% Similarity=0.657 Sum_probs=157.1
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+.+-.....+.++|-.+||||||+|....+.+. +..||.+++...++-..+.+.+||.+|+.+|+..|+.|++.+++++
T Consensus 14 ~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 14 NSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred HHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 344467889999999999999999999987766 6689999999999999999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
||+|+++++.++.....+...+.+....++|+++.+||.|+..+....++..++++..+..+.+-+|-+|+++..|++.+
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 030193 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~l~ 178 (181)
.+||.+.-.
T Consensus 174 ~~Wli~hsk 182 (186)
T KOG0075|consen 174 LDWLIEHSK 182 (186)
T ss_pred HHHHHHHhh
Confidence 999998643
No 69
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.6e-30 Score=176.21 Aligned_cols=157 Identities=21% Similarity=0.370 Sum_probs=120.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccc--eEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+||+++|++|+|||||++++.++.+.. ..++.+. ....+...+ ..+++||+||++++...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999888764 3445443 334455554 688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++.+|+....|+..+... ...++|+++|+||+|+..... .++........ ....++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKN----GMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHc----CCcEEEEEECCCCCCHHH
Confidence 99999999999888777766442 335799999999999875421 22221111100 113689999999999999
Q ss_pred HHHHHHHHh
Q 030193 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~l 177 (181)
+++++.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
No 70
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=5.6e-30 Score=180.31 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=119.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEE---CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||+++|.++.+. .+.||.+..+. .+.. ..+.+++|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999876 44556554432 2333 3468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCccCCcce-EEEEcccCCCCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITDKLGLHSLRQRHW-YIQSTCATSGEG 165 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 165 (181)
|++++.+|+.....|...+... .+++|+++|+||+|+.... ..++... + ....++ ++++|||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAES-V----AKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHH-H----HHHcCCcEEEEccCCCCCC
Confidence 9999999999876554444332 2578999999999986532 1111111 1 112223 789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++|..+.+.+..
T Consensus 155 v~~~f~~l~~~~~~ 168 (187)
T cd04132 155 VEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=1.3e-30 Score=180.06 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE---EEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+++++++.+. .+.||.+..+.. .....+.+++||++|++++...+..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999998875 445665533322 22345789999999999999988888999999999999
Q ss_pred CCCcccHHHHHHHHHHHhc--CCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 94 SNDRDRVVEARDELHRMLN--EDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~--~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+++++++.....|+..+.. .....++|+++|+||+|+.+... .++... + ....++++++|||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA-C----ATEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH-H----HHHhCCcEEEeecCCCCCHHHH
Confidence 9999999998887754432 12225789999999999965322 111111 1 1223457899999999999999
Q ss_pred HHHHHHH
Q 030193 170 LDWLSNN 176 (181)
Q Consensus 170 ~~~i~~~ 176 (181)
|++|.+.
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9999863
No 72
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=2.5e-30 Score=177.36 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=112.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccccc-CcccceEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+||+++|++|+|||||+.++....+.... |+.+.....+...+ +.+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 48999999999999999999988776433 33332223344444 7799999999975 2456889999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCC-cceEEEEcccCCCCCHHHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
+++.+|+.+..|+..+.......++|+++|+||+|+.... ..++.........++ .+++|++|||++|.|++++|+.+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999998888777655444678999999999984311 011111111111112 24689999999999999999999
Q ss_pred HHHh
Q 030193 174 SNNI 177 (181)
Q Consensus 174 ~~~l 177 (181)
.+.+
T Consensus 155 ~~~~ 158 (158)
T cd04103 155 AQKI 158 (158)
T ss_pred HhhC
Confidence 8653
No 73
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.6e-31 Score=170.07 Aligned_cols=162 Identities=20% Similarity=0.395 Sum_probs=128.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--E-EEE-CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--T-VEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~-~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+|++++|...+|||||+.++.+..|.. ...|.++.+. . +.. +.+++++|||+|+++|+...-.++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 567899999999999999999999999864 3456665542 2 222 3479999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+++|+++.++|..+..|.-. +......+.|+|+|+||||+.++.. +..+.+...+++.++.+||+||+.+.|++++
T Consensus 99 LmyDitNeeSf~svqdw~tq-Iktysw~naqvilvgnKCDmd~eRv---is~e~g~~l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQ-IKTYSWDNAQVILVGNKCDMDSERV---ISHERGRQLADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred EEEecCCHHHHHHHHHHHHH-heeeeccCceEEEEecccCCcccee---eeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence 99999999999888776544 5666778999999999999976421 1112222333344557899999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
|+.++..+.++
T Consensus 175 Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 175 FERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 74
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=3e-30 Score=183.37 Aligned_cols=157 Identities=22% Similarity=0.392 Sum_probs=124.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. .+.||.+..+ ..+... .+.+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35789999999999999999999998876 4566766443 344433 368899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.+|+.+..|+..+.... ...|+++|+||+|+..... .++..... +..+++++++|+++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999988877754432 4689999999999875432 12222111 1234679999999999999
Q ss_pred HHHHHHHHHhh
Q 030193 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~i~~~l~ 178 (181)
++|++|.+.+.
T Consensus 157 ~lf~~l~~~~~ 167 (199)
T cd04110 157 EMFNCITELVL 167 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 75
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.2e-30 Score=183.05 Aligned_cols=157 Identities=18% Similarity=0.402 Sum_probs=122.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|||||||++++.++.+. ...+|.+..+.. +.. ..+.++|||+||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 345666554432 333 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|++++++|+++..|+..+... ...++|+++|+||+|+.... ..++..... ...+++++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999998877665443 33478999999999986432 222222211 223458999999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
|+++.+.+...
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 76
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=6.7e-30 Score=177.85 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=117.0
Q ss_pred EEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
|+++|++|+|||||++++.+..+.. +.++....+. .+.. ..+.+++||+||++++...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988763 4455443322 2333 3467999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHH--------hhhCCCccCCcc-eEEEEcccCCCCC
Q 030193 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEIT--------DKLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~--------~~~~~~~~~~~~-~~~~~~S~~~~~~ 165 (181)
++++|+.....|...+.... +++|+++|+||+|+..... .+++. ........+..+ .++++|||++|.|
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 99999998764555444332 5799999999999865321 11111 000001112223 3789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++|+.+.+.+..
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987653
No 77
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.3e-30 Score=181.70 Aligned_cols=157 Identities=23% Similarity=0.375 Sum_probs=122.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||+++|.+..+.. +.+|.+..+ ..+.. ..+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998864 566665433 23333 3468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++++|..+..|+...... ...+.|+++|+||+|+.+.... .+....+. +..+++++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999998876665432 2246899999999998753321 11111111 12245799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (188)
T cd04125 156 LLVKLIIK 163 (188)
T ss_pred HHHHHHHH
Confidence 99998764
No 78
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=2.5e-30 Score=177.92 Aligned_cols=152 Identities=18% Similarity=0.343 Sum_probs=119.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE----CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
+||+++|++|+|||||++++.+..+. ...||.+..+. .+.. ..+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999998876 34566665542 2333 35789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|++++++++....|+..+.... .++|+++|+||+|+..... .++..... +..+++++++|++++.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999998888776654322 4799999999999865432 22222111 12245799999999999999
Q ss_pred HHHHHHHH
Q 030193 169 GLDWLSNN 176 (181)
Q Consensus 169 ~~~~i~~~ 176 (181)
++++|...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999764
No 79
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=3.7e-30 Score=178.37 Aligned_cols=157 Identities=18% Similarity=0.313 Sum_probs=122.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+++||++|++++...+..+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999988653 344544433 223333 46899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|++++.+++.+..|+.+..... .+++|+++|+||.|+.... ..++..... ...+++++++|+++++|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999988777664432 3679999999999987432 222322221 223467999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|.++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 80
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=2.8e-30 Score=177.61 Aligned_cols=154 Identities=20% Similarity=0.365 Sum_probs=119.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+. ...++.+..+ ..+... .+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998875 3444544333 223333 468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|+++++++..+..|+...... ..+++|+++|+||+|+.... ..++...... ..+++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999998877765332 23689999999999986532 2222222221 223689999999999999999
Q ss_pred HHHHHHh
Q 030193 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~l 177 (181)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 81
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=5.7e-30 Score=176.76 Aligned_cols=155 Identities=21% Similarity=0.382 Sum_probs=122.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|||||||++++.++.+. ...|+.+..+ ..+...+ +.+++||+||++++...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 579999999999999999999998876 4456665443 3344444 6899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|++++.+++....|+..+... ...++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 9999999999998877765443 22468999999999986532 222222221 123457999999999999999
Q ss_pred HHHHHHHh
Q 030193 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~l 177 (181)
++++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 82
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1.4e-29 Score=175.59 Aligned_cols=159 Identities=14% Similarity=0.302 Sum_probs=122.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE--EE--EECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||++++.++.+.. ..++.+.... .+ +...+.+++||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 456899999999999999999999988764 4566655432 23 334578899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+|||++++++++....|...+.... ...++|+++|+||+|+.... ..++..+..... ..++++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----GDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----CCCeEEEEECCCCCC
Confidence 9999999999999888776655422 12468999999999986432 333333221111 123789999999999
Q ss_pred HHHHHHHHHHHh
Q 030193 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~~~~~i~~~l 177 (181)
++++|+.+.+.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=4e-29 Score=173.33 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=121.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
++.+||+++|++|+|||||+++|+++.+. .+.||.+..+ ..+...+ ..+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56789999999999999999999999875 4567766443 2344433 6889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
++|+|++++.+|+....|+...... .++|+++|+||+|+.+.. ..+++.+.++.. +++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 9999999999998887777654222 479999999999986432 223343333321 3578999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030193 164 EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~ 179 (181)
.|++++|+.+.+.+..
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999987653
No 84
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=5.9e-30 Score=178.13 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=118.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++.++.+.. ..|+....+ ..+... .+.+++||++|++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999988763 445543222 233333 4668899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCccCCcc-eEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~S~~~~ 163 (181)
+.++.+|+.....|...+... .++.|+++|+||+|+.+............ ....+..+ .++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999876666655543 46899999999999865422111111000 01111222 36899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++|+.+.+.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
No 85
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=8.9e-30 Score=175.29 Aligned_cols=154 Identities=16% Similarity=0.275 Sum_probs=118.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE----EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+.. ..++.+.... .++...+.+++||++|+++|...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988763 3344443322 22334578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
|++++.++.....|+..+... .++.|+++|+||+|+.... .++.. .+ ....+++++++||++|.|++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999998888777665432 2478999999999985321 11111 11 1223468899999999999999999
Q ss_pred HHHHhhh
Q 030193 173 LSNNIAT 179 (181)
Q Consensus 173 i~~~l~~ 179 (181)
+.+.+.+
T Consensus 153 l~~~~~~ 159 (161)
T cd04124 153 AIKLAVS 159 (161)
T ss_pred HHHHHHh
Confidence 9987654
No 86
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=1.4e-29 Score=174.38 Aligned_cols=155 Identities=20% Similarity=0.407 Sum_probs=122.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.++.+.. ..++.+..+ ..+.. ....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998774 566665432 23333 457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|+++++++.....|+..+..... ++.|+++++||+|+.... ..++..... +..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYA-----DENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 999999999999888777655433 679999999999987422 222322211 122357999999999999999
Q ss_pred HHHHHHHh
Q 030193 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~l 177 (181)
++++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99998875
No 87
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=9.9e-30 Score=174.78 Aligned_cols=155 Identities=20% Similarity=0.396 Sum_probs=120.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.||+++|++|||||||++++++..+. ...++.+..+ ..+..++ ..+++||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998876 4455555443 3344443 67999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++++|+....|+..+..... .+.|+++++||+|+..... ..+....+. +..+++++++|++++.|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA----KELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999888887655432 3699999999999954321 222111111 12246799999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
++.+.+
T Consensus 156 ~i~~~l 161 (161)
T cd01861 156 KIASAL 161 (161)
T ss_pred HHHHhC
Confidence 998754
No 88
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=9.3e-30 Score=176.65 Aligned_cols=158 Identities=21% Similarity=0.396 Sum_probs=121.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcc-cccccccccccEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIR-PLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~-~~~~~~~~~~d~~i~ 90 (181)
.+||+++|++|+|||||++++.+..+. ...++.+..+ ..+... .+.+++||++|+++++ ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 579999999999999999999988876 3455655433 234433 4789999999999887 468888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCC---CCCH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATS---GEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i 166 (181)
|||++++.+|+....|...........++|+++|+||+|+...... .+....+. +..++++++|||++ +.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999887766655443457999999999998654321 22222221 12236799999999 8999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
+++|..+.+.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 89
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=3.8e-30 Score=177.09 Aligned_cols=154 Identities=26% Similarity=0.446 Sum_probs=123.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|+|||||+++|.+..+. .+.+|.+..... +.. ..+.+++||++|++++...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999877 456676555543 333 44789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
++++++|..+..|+..+..... .++|+++++||+|+.+ ....++..... +..+.+|++||++++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999977776554432 4699999999999876 22333322211 12235899999999999999999
Q ss_pred HHHHHhh
Q 030193 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~l~ 178 (181)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 90
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4.7e-31 Score=171.47 Aligned_cols=157 Identities=20% Similarity=0.351 Sum_probs=127.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
-++.+|+|++|+|||||+-+|..+.|. ++..|++.++ ..+++ ..++++|||++|+++|+.+...|+++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 456689999999999999999999887 5666766554 44544 458999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
||+++.+||.+..+|+.++...- +.+|=++|+||+|.+........ .....+.++++.+||+|+++.+|++..|.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~---dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTE---DARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehH---HHHHHHHhcCchheehhhhhcccchHHHH
Confidence 99999999999999998876543 58999999999998765322211 11222345667899999999999999999
Q ss_pred HHHHHhh
Q 030193 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~l~ 178 (181)
-|.+.+.
T Consensus 163 cit~qvl 169 (198)
T KOG0079|consen 163 CITKQVL 169 (198)
T ss_pred HHHHHHH
Confidence 8887653
No 91
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=7.2e-30 Score=180.51 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=112.5
Q ss_pred cceEEEEcCCCCChHHHHh-hhhcCCc-----c-cccCcccc-e-EE-----------EEEECCEEEEEEEcCCCCCccc
Q 030193 17 EMRILMVGLDAAGKTTILY-KLKLGEI-----V-TTIPTIGF-N-VE-----------TVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~-~l~~~~~-----~-~~~~t~~~-~-~~-----------~~~~~~~~~~~~d~~g~~~~~~ 76 (181)
.+||+++|++|+|||||+. ++.+..+ . .+.||.+. . +. .++...+.+++|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 5799999999999999995 6655433 2 34567642 1 11 23344689999999999753
Q ss_pred ccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHHH
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----------------AAEIT 140 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------------~~~~~ 140 (181)
....+++++|++++|||++++.+|+++...|...+.... ++.|+++|+||+|+.+... ...+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 456688999999999999999999999764544444332 4789999999999864210 01122
Q ss_pred hhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
...+...++..+++|+||||++|.|++++|+.+.++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 222223334456689999999999999999999864
No 92
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=7.8e-30 Score=182.85 Aligned_cols=160 Identities=23% Similarity=0.405 Sum_probs=125.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||+++|.+..+....|+.+... ..+... .+.+.+||+||++++...+..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 567899999999999999999999988766667766544 334333 4688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
|||++++++|......|...+... ...+.|+++|+||+|+...... ++... + ....+++++++||+++.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-L----AKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999988776655432 2246799999999998654221 22211 1 11234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|++|.+.+..
T Consensus 167 ~l~~~l~~~~~~ 178 (211)
T PLN03118 167 QCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 93
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=4e-29 Score=182.45 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=122.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc-ceEEEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG-FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~-~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+++|+++.+. .+.||.+ .....+... .+.++||||+|++.|...+..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999998886 4456664 222334443 4789999999999999888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcC--------CCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNE--------DELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~--------~~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
++++++|+....|+..+... ....++|+++|+||+|+.. ....+++...... ..++.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 99999999998887776542 1235789999999999964 3344444443321 12457999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++|++|.+..
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999864
No 94
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=1.3e-29 Score=179.23 Aligned_cols=155 Identities=17% Similarity=0.314 Sum_probs=119.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc--ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|+|||||+++|+++.+.. +.+|.+..+ ..+... .+.+++||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988753 556665443 234443 36788999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
||++++.+|+....|+..+... . .+.|+++|+||+|+..... .++... + ....+++++++||+++.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL-E-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-F----ADEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-C-CCCCEEEEEEcccccccccccCccCHHHHHH-H----HHHcCCeEEEEeCCCCCC
Confidence 9999999998887766655432 2 4789999999999864321 111111 1 122345789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++++++.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 95
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=1.1e-29 Score=175.91 Aligned_cols=156 Identities=18% Similarity=0.267 Sum_probs=121.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++.++.+. ...+|.+..+ ..+.. ..+.+++||+||+++|...+..+++.++++++|+|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 68999999999999999999988875 4456655333 22333 34788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcc-eEEEEcccCCCCCHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~ 170 (181)
++++++++....|...+.......++|+++++||.|+..... .++... + .+..+ .+++++||+++.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 82 VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-L----SQQWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-H----HHHcCCceEEEeeCCCCCCHHHHH
Confidence 999999999988777665543345799999999999865332 122111 1 11122 579999999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
+++...+.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99987653
No 96
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=1.1e-29 Score=182.54 Aligned_cols=160 Identities=20% Similarity=0.352 Sum_probs=126.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+. ...+|.+..+ ..+... .+.+++||++|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999998876 4566766554 334443 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|||++++.+|+.+..|+..+... ...++|+++|+||+|+...... ++....+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999988877665443 2357999999999998654322 12222221 12356899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
+|+++...+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 97
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=2.9e-29 Score=177.81 Aligned_cols=150 Identities=23% Similarity=0.331 Sum_probs=119.7
Q ss_pred EcCCCCChHHHHhhhhcCCcc-cccCcccceEEEE--E--ECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 23 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV--E--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 23 ~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~--~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+|++|||||||+++++.+.+. .+.||.+..+... . ...+.+++||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 599999999999999988876 4567877665433 2 2458999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
.+|..+..|+..+... . .++|+++|+||+|+.......+.. ...+..++++++|||++|.|++++|.++.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~-~-~~~piilvgNK~Dl~~~~v~~~~~-----~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRV-C-ENIPIVLCGNKVDVKDRKVKAKSI-----TFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHh-C-CCCCEEEEEECcccccccCCHHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999998876666543 2 579999999999986432211111 11233467899999999999999999999876
Q ss_pred hh
Q 030193 178 AT 179 (181)
Q Consensus 178 ~~ 179 (181)
..
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 53
No 98
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.9e-29 Score=175.59 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=113.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||+.++.+..+... .||. ... ..+.. ..+.+++||+||++++...+..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999998887643 4443 222 12333 3478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---------hHHHhhhCCCccCCcc-eEEEEcccCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---------AEITDKLGLHSLRQRH-WYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (181)
|++++.+|+.....|...+... ..+.|+++|+||+|+...... ..+.........+..+ .++++|||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 9999999998865455444432 246899999999998643210 0000000111112223 3799999999
Q ss_pred CCCHHHHHHHHHH
Q 030193 163 GEGLYEGLDWLSN 175 (181)
Q Consensus 163 ~~~i~~~~~~i~~ 175 (181)
|.|++++|+.+.-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 99
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3e-29 Score=173.49 Aligned_cols=157 Identities=14% Similarity=0.206 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE-E--EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~-~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+||+++|++|+|||||++++.++.+....++....+ . .+....+++++||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999988865444332222 1 2333568999999999998888777778999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+++.+++....+|...++... .+.|+++|+||+|+.+.... +++.... ..+. ...++++|||+++.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~-~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIM--NEFR-EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHH--HHHh-cccEEEEeccccccCHHHHH
Confidence 999999998776766555433 47999999999999765432 1111100 0000 01268999999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
+.+.+.+.
T Consensus 157 ~~~~~~~~ 164 (166)
T cd01893 157 YYAQKAVL 164 (166)
T ss_pred HHHHHHhc
Confidence 99988764
No 100
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=1.7e-29 Score=173.94 Aligned_cols=156 Identities=21% Similarity=0.436 Sum_probs=122.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+. ...++.+... ..+...+ +.+++||+||++++...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988875 3345555433 3344444 68999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|+.++.+++.+..|+....... ..++|+++|+||+|+.... ..+.... +. +..+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999988887666554432 2579999999999987532 2222222 21 2234679999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
+++.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998765
No 101
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=1e-28 Score=175.17 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=116.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccc--------ccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPL--------WRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~--------~~~~~~~ 84 (181)
+||+++|++|||||||++++.++.+. .+.||.+... ..+...+ +.+++|||||...+... ...+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999998876 3566665333 2333444 78899999997654321 2344688
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEccc
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+|++++|||++++++|+.+..|+..+.... ...++|+++|+||+|+.... ..++... +.. +..++++++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~-~~~---~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSV-LVR---KSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHH-HHH---HhcCCcEEEecC
Confidence 999999999999999999888777665432 23579999999999996532 2222211 110 123467999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++|+.+.+.+..
T Consensus 157 k~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 157 KYNWHILLLFKELLISATT 175 (198)
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999987653
No 102
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=1.5e-28 Score=170.61 Aligned_cols=158 Identities=15% Similarity=0.268 Sum_probs=120.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||++++.+..+.. ..++.+... ..+... .+.+++||+||++.+...+..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999988653 344544333 233343 367889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
|++++++++....|...++.... ..++|+++|+||+|+..+ ...++........ ...+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----GNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----CCceEEEEECCCCCCHH
Confidence 99999998888776665544322 237999999999999742 2333332222111 12579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++++++.+.+.+
T Consensus 157 ~l~~~i~~~~~~ 168 (172)
T cd01862 157 QAFETIARKALE 168 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999987664
No 103
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.96 E-value=9.4e-29 Score=169.98 Aligned_cols=155 Identities=25% Similarity=0.437 Sum_probs=121.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+.. ..|+.+..+ ..+.. ..+.+++||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988753 555555433 22333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++++++....|+..........+.|+++|+||+|+.... ..++..... +..+++++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999888876655544444679999999999997433 222222211 12356799999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
.+.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 998753
No 104
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=2.2e-29 Score=180.27 Aligned_cols=159 Identities=18% Similarity=0.309 Sum_probs=124.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE--CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||++++.+..+. ...+|.+..+. .+.. ..+.+++||++|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999998775 34566655432 2333 3467899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.+|+....|+...... ...+.|+++|+||+|+.+.. ..++..+.. +..+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999999988877765433 23579999999999986532 222222211 2234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+++.+.+.+
T Consensus 158 e~f~~l~~~~~~ 169 (210)
T PLN03108 158 EAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 105
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-29 Score=164.66 Aligned_cols=162 Identities=22% Similarity=0.354 Sum_probs=130.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EE--ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+.-+|++++|+.|+|||.|+.+|....+. +..+|.++.+.. ++ .+.++++||||+|+++|++....|++.+-+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 45689999999999999999999999887 456788776532 33 35589999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|+|+++.++|.....|+.+...-.. +++-+++++||.|+..+.+..-+ ....+.+...+-+.++|+++|+|+++.
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL~~~R~Vtfl---EAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFL---EASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhcChhhhhhHH---HHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999888655433 67889999999999765332222 222333444557889999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
|-.....+..|
T Consensus 163 Fl~c~~tIl~k 173 (214)
T KOG0086|consen 163 FLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHH
Confidence 98888776543
No 106
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=2e-28 Score=168.55 Aligned_cols=157 Identities=18% Similarity=0.312 Sum_probs=123.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE---EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++.+..+.. ..++....+. .++...+.+++||+||++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999988763 3444433222 223345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+.++.+|.....++..+.......++|+++|+||+|+... ...++..... ++.+.+++++|++++.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999998888877654468999999999999762 1222221111 12235799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988765
No 107
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=1.3e-28 Score=171.56 Aligned_cols=160 Identities=18% Similarity=0.297 Sum_probs=118.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+.||+++|++|||||||++++.+..+. .+.||.+..+ ..+.. ..+.+++||++|++++...+..++.++|++++|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 468999999999999999999998876 3456655432 23333 3468899999999999999888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhC--------CCccCCc-ceEEEEcccCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLG--------LHSLRQR-HWYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~S~~~ 162 (181)
|++++++|..+...|...+... ..+.|+++|+||+|+.+..... ++..... ....... .+++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999988876555555432 2478999999999986532211 1110000 0000111 24789999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
|.|++++|+++.+..
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 108
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=3.9e-29 Score=172.39 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=118.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCcccceEEE--EE---ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVET--VE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~--~~~-~~~~t~~~~~~~--~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+||+++|++|||||||++++.+. .+. .+.+|.+..+.. +. .....+++||+||++.+...+..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 444 456676655422 22 23489999999999999998999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|+|++++.++.....|+....... .++|+++|+||+|+.+...... ....+. ...+.+++++|++++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999988877776654432 4699999999999865432221 111111 11235789999999999999
Q ss_pred HHHHHHHHh
Q 030193 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~l 177 (181)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998864
No 109
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=2.9e-29 Score=173.32 Aligned_cols=155 Identities=16% Similarity=0.236 Sum_probs=113.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE---EEEEECCEEEEEEEcCCCCC-cccccccccccccEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVEYKNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|+|||||+++++.+.+. .+.++....+ ..++...+.+++||+||+++ +...+..+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 5899999999999999999988775 3445543222 22333456799999999985 34556778899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCC-CCHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG-EGLYEG 169 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~~i~~~ 169 (181)
++++++|+.+..|+..+..... ..++|+++|+||+|+.... ..++... + .+..+.++++||++++ .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK-L----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH-H----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999988876655443221 3579999999999985432 2222111 1 1122347999999999 599999
Q ss_pred HHHHHHHhh
Q 030193 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~l~ 178 (181)
|..+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
No 110
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.6e-29 Score=166.96 Aligned_cols=162 Identities=22% Similarity=0.425 Sum_probs=129.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEE--EEE---CCEEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~--~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
...+++.++|++-+|||||++.++.+.+.. ..||.+++++. ++. ..+++++|||+|+++|++...+|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 457899999999999999999999999874 57888877632 332 347899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
++|+|.++..+|+.+..|+.+.......+. +-..+|++|+|+.... ++..+.....+...+..++|||+++|.|++
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR---qVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR---QVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc---cccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999887665544444 4457999999997542 111112222223344579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+.|+.+.+.+..
T Consensus 163 EAF~mlaqeIf~ 174 (213)
T KOG0091|consen 163 EAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 111
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=1.1e-28 Score=177.75 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=115.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccCccc--ceEEEEEE--CCEEEEEEEcCCCCCcccccccccc-cccEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~-~~d~~i~ 90 (181)
+||+++|++|+|||||+++|.++.+. ...++.+ .....+.. ....+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999887774 3344442 33333433 557899999999982 23344556 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|||++++.+|....+|+..+.......++|+++|+||+|+.+... .++.. .+ ....+++++++||+++.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR-AC----AVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH-HH----HHHcCCeEEEecCCCCCCHHH
Confidence 999999999999888777665543345799999999999865432 12111 11 122345789999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 112
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-29 Score=165.08 Aligned_cols=157 Identities=21% Similarity=0.348 Sum_probs=127.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--E--EEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
-+||+++|..|+|||.|+++|..+-|+ ....|+++.+. . ++.+++++++|||+|+++|++...+|++.++.+|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 579999999999999999999998876 66778876653 3 445668999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+|++-..+|....+|+.++-. +...++.-|+|+||.|+.+..+ .+++...+ .+.+...+.++||++-.|++.+|
T Consensus 87 ydiscqpsfdclpewlreie~-yan~kvlkilvgnk~d~~drrevp~qigeef----s~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQ-YANNKVLKILVGNKIDLADRREVPQQIGEEF----SEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EecccCcchhhhHHHHHHHHH-HhhcceEEEeeccccchhhhhhhhHHHHHHH----HHhhhhhhhhhcccchhhHHHHH
Confidence 999999999998887766533 3335788899999999987633 33333333 23345578899999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
..+.-.+.
T Consensus 162 ~~~a~rli 169 (213)
T KOG0095|consen 162 LDLACRLI 169 (213)
T ss_pred HHHHHHHH
Confidence 98876654
No 113
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=7.2e-29 Score=172.02 Aligned_cols=157 Identities=21% Similarity=0.287 Sum_probs=117.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-E--EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+++|.+..+. ...++..... . ......+.+++||+||++++......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999998874 4444443222 1 222345789999999999988888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCccCCcce-EEEEcccCCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLHSLRQRHW-YIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (181)
++++.+|......|...+.... .++|+++|+||+|+.+...... +............++ +++++|+++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999888877766655433 4799999999999876543211 111111111122233 79999999999
Q ss_pred CHHHHHHHHHH
Q 030193 165 GLYEGLDWLSN 175 (181)
Q Consensus 165 ~i~~~~~~i~~ 175 (181)
|++++++++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 114
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.9e-29 Score=160.34 Aligned_cols=180 Identities=56% Similarity=0.945 Sum_probs=166.9
Q ss_pred CcchHHHHHHhhhcc-ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccc
Q 030193 1 MGLSFTKLFSKLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 m~~~~~~~~~~~~~~-~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 79 (181)
|+--++.+++.+... +..+|+++|--|+||+++.-++.-.+..++.||.+++...+.+++.++++||..|+...+..|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 566778888888775 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
-|+.+.+.+|||+|.++.+........+..++.+..+++..+++++||.|........|....+++..++++.|.+|++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999888888899999988888899999999999988777888888899988899999999999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 030193 160 ATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|.+|+|+++.++|+.+-+.++
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988765
No 115
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=4.3e-28 Score=172.23 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=121.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc-cCccc-ceEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
||+++|++|+|||||++++++..+... .+|.. .....+...+ +.+++||++|+..+...+..+++.+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999887643 34442 3333444545 7899999999999999888999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+++.+++....|+..+.......++|+++|+||+|+..... .++..+... ...+.+++++||++|.|++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999988877776654445799999999999865311 212221111 12234789999999999999999
Q ss_pred HHHHHhh
Q 030193 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~l~ 178 (181)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
No 116
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=2.3e-28 Score=167.84 Aligned_cols=154 Identities=21% Similarity=0.355 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++++..+.. ..++..... ..+.. ....+++||++|++.+...++.+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988753 334443322 22333 3467999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++++++....|+..+..... .++|+++|+||+|+..... .+++.... +..+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999888877666544322 3799999999999874322 22222221 1224578999999999999999
Q ss_pred HHHHHHh
Q 030193 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~l 177 (181)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
No 117
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.95 E-value=2.3e-27 Score=161.92 Aligned_cols=151 Identities=23% Similarity=0.439 Sum_probs=119.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+... .+|.+..... +.. ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999987753 5666655443 333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-C-CCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-N-AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|+.++++++....|+..+.... ..+.|+++++||+|+. . ....++...... ..+.+++++|++++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999888988888766655542 2469999999999996 2 223333333222 245689999999999999999
Q ss_pred HHHH
Q 030193 171 DWLS 174 (181)
Q Consensus 171 ~~i~ 174 (181)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
No 118
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=1.5e-27 Score=166.91 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccce-EEEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.||+++|++|+|||||++++.+..+.. ..|+.... ...+... .+.+++||+||++++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999888753 45555432 2334443 4678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+++..+++....++..++......+.|+++|+||+|+.... ..++..... +..+++++++|++++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999998888776555678999999999986432 222221111 12235789999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99987653
No 119
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=9.9e-28 Score=164.39 Aligned_cols=154 Identities=21% Similarity=0.313 Sum_probs=120.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
||+++|++|||||||++++++..+. ...++.+... ..+... .+.+++||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999988765 3445444222 234444 47899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
++++++.....++..+........+|+++|+||+|+.... ..++...... +.+.+++++|++++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999998888887765544579999999999987522 2222222211 12257899999999999999999
Q ss_pred HHHHh
Q 030193 173 LSNNI 177 (181)
Q Consensus 173 i~~~l 177 (181)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 120
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=6.4e-27 Score=162.04 Aligned_cols=157 Identities=20% Similarity=0.370 Sum_probs=118.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|+|||||++++.+..+. ...++.+.. ...+...+ ..+++||++|++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999977765 345555433 23344444 678999999999999988899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|+|+.++.++.....|+..+ ......++|+++|+||+|+.+.... .+....+. +...+++++||+++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l-~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREI-EQYANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHH-HHhCCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence 99999988988887765543 3222247999999999998654322 22222221 111257899999999999999
Q ss_pred HHHHHHHh
Q 030193 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~l 177 (181)
++.+.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998764
No 121
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=5.7e-27 Score=165.03 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=114.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+.||+++|++|+|||||++++....+. ...+|....+. .+... ...+.+||++|++.+......+++.++++++|+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 358999999999999999999977765 33444433322 23333 367899999999988887777889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-H------HHhhhCCCccCCcc-eEEEEcccCCCC
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-E------ITDKLGLHSLRQRH-WYIQSTCATSGE 164 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~S~~~~~ 164 (181)
|++++++|......|...+.... +++|+++|+||+|+.+..... + +.........+..+ .++++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 99999999998765555544332 469999999999985421100 0 00000001111122 378999999999
Q ss_pred CHHHHHHHHHHHhh
Q 030193 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~i~~~~~~i~~~l~ 178 (181)
|++++|+++.+.+.
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999997654
No 122
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2e-29 Score=165.82 Aligned_cols=163 Identities=21% Similarity=0.413 Sum_probs=130.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccceE--EEEEE-----------CCEEEEEEEcCCCCCccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY-----------KNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~--~~~~~-----------~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
+.-||.+.+|++|+||||++.++..+.|... ..|.++++ .++-+ ..+.+++|||+|+++|++..-.
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 3456788999999999999999999988754 44555444 23222 2367899999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+=+++++||+++.+||-++..|+...-......++-+++++||+|+.+.....+ ......+.+.++||||+||
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~---~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE---DQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH---HHHHHHHHHhCCCeeeecc
Confidence 9999999999999999999999999999987777778899999999999976532221 1122233456678999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
-+|.|+++..+-+.+.++++
T Consensus 164 ~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHH
Confidence 99999999999998887654
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=2.5e-26 Score=165.18 Aligned_cols=160 Identities=23% Similarity=0.355 Sum_probs=126.3
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEE----ECCEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|||||||+++++.+.+. .+.+|.+..+.... .+.+.+++||++|++++...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 3466899999999999999999988877765 56777776665443 245899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+++|+|+++..+|..+..|+..+.... .++|+++++||+|+.+.....+.... .+..++.++++|+++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999998888776665332 47899999999998654322222111 12234578999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|.+|.+.+..
T Consensus 158 ~~f~~ia~~l~~ 169 (215)
T PTZ00132 158 KPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 124
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=4.8e-28 Score=159.26 Aligned_cols=161 Identities=20% Similarity=0.330 Sum_probs=124.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-cCccc--ceEEEEE--ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~--~~~~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.-++||+++|..=+|||||+-+++.+.|... ..|.. +....++ .....+.||||+|+++|.++-+-|++.+|+++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 4589999999999999999999999988632 22222 2223333 34568999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|||+++.+||+.+..|..++... .+..+-+++|+||+|+..+.. +........++.-+..|+++||+++.|+.++
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~---Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQ---VTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhh---hhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 999999999999999988776443 336789999999999864321 1111112222333456899999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|+.+...+.+
T Consensus 167 Fe~Lt~~MiE 176 (218)
T KOG0088|consen 167 FESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 125
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=1.9e-26 Score=163.40 Aligned_cols=146 Identities=22% Similarity=0.310 Sum_probs=107.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE-------CCEEEEEEEcCCCCCcccccccccccccE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~-------~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
+||+++|++|+|||||++++.++.+. .+.||.+..+ ..+.+ ..+.+++||++|+++|...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999876 4566776433 22332 34789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC------------------CCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCCcc
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLHSL 148 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~~~~ 148 (181)
+|+|||++++.+|+++..|+..+.... ...++|+++|+||+|+.++...... ...-....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999998887775421 1246899999999999654211111 111111123
Q ss_pred CCcceEEEEcccCCC
Q 030193 149 RQRHWYIQSTCATSG 163 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~ 163 (181)
++.+.+.++.++++.
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 344556666776653
No 126
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.94 E-value=2e-26 Score=148.86 Aligned_cols=165 Identities=47% Similarity=0.799 Sum_probs=153.8
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECC-EEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.++.++|+++|-.++|||||+..|.+..+....||.+++...+...+ ..+++||.+|+...+..|..|+.+.|++|||+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 38899999999999999999999999999888999999999998876 89999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
|.++...|+.+.+.+.+.+...+...+|+.+..||.|+..+...+++...+.+..++.+-|.+-+||+.+++|+.+-.+|
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w 173 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence 99999999999999999998888889999999999999999899999998999989999999999999999999999988
Q ss_pred HHHHhh
Q 030193 173 LSNNIA 178 (181)
Q Consensus 173 i~~~l~ 178 (181)
+.....
T Consensus 174 v~sn~~ 179 (185)
T KOG0074|consen 174 VQSNPE 179 (185)
T ss_pred hhcCCC
Confidence 876543
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=9.3e-26 Score=156.07 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-c--cCcccceEEEEEECCEEEEEEEcCCCCCccc---------ccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---------~~~~~~~~~ 85 (181)
.+|+++|++|+|||||+++|.+..+.. . ..|.+.....+..++..+++|||||+..... ........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 479999999999999999999987642 1 2355555556666779999999999743110 000111236
Q ss_pred cEEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 86 QGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
|++++|+|++++.++ .....++... .... .+.|+++|+||+|+.......+... + .+...+++++|||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l-~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEI-KPLF-KNKPVIVVLNKIDLLTFEDLSEIEE-E----EELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHH-Hhhc-CcCCeEEEEEccccCchhhHHHHHH-h----hhhccCceEEEEeccc
Confidence 899999999876654 4444444433 3221 4799999999999976543333111 1 1223567999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 128
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=8.2e-27 Score=161.36 Aligned_cols=163 Identities=17% Similarity=0.256 Sum_probs=128.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE---EEEE-ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~---~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+|+.++|+..+|||+++-.+..+.|+ .+.||.--++ ..++ .+.+++.+|||+|+++|...++..+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35789999999999999999999988887 5677765333 2343 55689999999999999999988999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhh--------hCCCccCCcc-eEEEEcc
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDK--------LGLHSLRQRH-WYIQSTC 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~--------~~~~~~~~~~-~~~~~~S 159 (181)
+||++.++.+|+++...|...+.++. +++|+++|++|.|+.+.... +++.+. .+...++..+ ..|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999999988888887776 89999999999999853211 111111 0011111122 5799999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
|++..|++++|+.......
T Consensus 161 a~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhCCcHHHHHHHHHHHh
Confidence 9999999999999888654
No 129
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=163.71 Aligned_cols=159 Identities=22% Similarity=0.292 Sum_probs=131.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE---EEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+..||.++|.+|+|||+|+.++....|. .+.||++-.+ ..++.+.+.+.|+||+|++.|..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4679999999999999999999999987 5678776433 23444567899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|+++++.||+.+...+..+...+....+|+++|+||+|+.+. ...++-.. .+..++++++|+||+.+.+++++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~-----la~~~~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKA-----LARSWGCAFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHH-----HHHhcCCcEEEeeccCCcCHHHH
Confidence 999999999999999999866555567899999999999863 23333222 14455667999999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|..+.+.+..
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=8.8e-26 Score=156.42 Aligned_cols=156 Identities=26% Similarity=0.250 Sum_probs=108.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECCE-EEEEEEcCCCCC----cccccccc---cccccE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDK----IRPLWRHY---FQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~~~d~~g~~~----~~~~~~~~---~~~~d~ 87 (181)
+|+++|++|||||||++++.+.... .. ..|.......+...+. .+.+|||||... ++.....+ +..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999976642 11 2244444444555665 999999999632 22222333 346999
Q ss_pred EEEEEECCCc-ccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|+|++++ .+++....|...+.... ...+.|+++|+||+|+.+.....+....+.... .+.+++++|++++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL---WGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---CCCCEEEEecCCCCC
Confidence 9999999988 67777766655443321 124689999999999976554443333221110 245789999999999
Q ss_pred HHHHHHHHHHHh
Q 030193 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~~~~~i~~~l 177 (181)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 131
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.8e-27 Score=155.65 Aligned_cols=179 Identities=38% Similarity=0.710 Sum_probs=154.8
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCC--------cccccCcccceEEEEEECCEEEEEEEcCCCC
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE--------IVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 72 (181)
|=.++.-+++..+....+.|+|+|..++|||||+.+..... +..-.||.+.+...+......+.+||..|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 33456667777888899999999999999999999885433 1234678999999999999999999999999
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CccCCc
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRQR 151 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~ 151 (181)
..+++|..||..+|++||+||+++++.|+.....+..........++|+++.+||.|+.+..+.+++...+.. .....+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999998888888877777789999999999999999888888887773 333445
Q ss_pred ceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 152 HWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..++.++||.+|+|+++..+|+...+.+
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhh
Confidence 6789999999999999999999998765
No 132
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=2.9e-28 Score=156.08 Aligned_cols=150 Identities=19% Similarity=0.403 Sum_probs=121.2
Q ss_pred EEEcCCCCChHHHHhhhhcCCccc--ccCcccceEE----EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 21 LMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 21 ~v~G~~~~GKSsli~~l~~~~~~~--~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+++|++++|||.|+-++..+.|.. -..|.++++. .++..++++++|||+|+++|++....|++.+|.+++++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999999888777652 2456666553 3455678999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
.+..||++...|+.++-. .....+.+++++||+|+.++ .+.+.+...+ ++|++++|+++|.|++..
T Consensus 81 ankasfdn~~~wlsei~e-y~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y--------~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHE-YAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY--------GIPFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHH-HHHhhHhHhhhccccccchhhccccchHHHHHHHH--------CCCceeccccccccHhHH
Confidence 999999999998877543 33346889999999999653 2344444444 457889999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
|-.|.+.+.+
T Consensus 152 f~~ia~~l~k 161 (192)
T KOG0083|consen 152 FLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.7e-25 Score=156.28 Aligned_cols=151 Identities=18% Similarity=0.209 Sum_probs=107.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC-------cc-cccCc------ccce----EEEE-----EECCEEEEEEEcCCCCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE-------IV-TTIPT------IGFN----VETV-----EYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~-------~~-~~~~t------~~~~----~~~~-----~~~~~~~~~~d~~g~~~~~ 75 (181)
+|+++|++++|||||+++|++.. +. ...++ .+.. ...+ +.+++.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 78999999999999999998742 11 11111 1111 1122 3356889999999999999
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccCCcc
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRH 152 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~ 152 (181)
..+..+++.+|++++|+|+++..+++....++ .... .++|+++|+||+|+.+... .+++.+.+... .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 99999999999999999998766555544333 2222 3689999999999864321 12333333221 1
Q ss_pred eEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 153 WYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 153 ~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..++++||++|.|++++++++.+.+..
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 358999999999999999999987643
No 134
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.7e-26 Score=147.93 Aligned_cols=159 Identities=19% Similarity=0.322 Sum_probs=128.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE----EEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+|..++|+-|+|||.|+..|....|. +..+|+++.+ ..+.+.+.++++||++|+++|+....+|++.+-+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 45789999999999999999999999987 5556777654 335556789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|+..+..+.....|+.....- ..++.-+++++||.|+.+... .++. + .+++..+..+.++|+++|.|++
T Consensus 89 mvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeea-k----~faeengl~fle~saktg~nve 162 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEA-K----EFAEENGLMFLEASAKTGQNVE 162 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHH-H----HHHhhcCeEEEEecccccCcHH
Confidence 999999998888888888775443 337888999999999865432 2222 2 2234456689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+.|-...+++..
T Consensus 163 dafle~akkiyq 174 (215)
T KOG0097|consen 163 DAFLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999877776653
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.8e-25 Score=153.84 Aligned_cols=151 Identities=23% Similarity=0.158 Sum_probs=102.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC---cc-cc--cCcccceEEEEEEC-CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE---IV-TT--IPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~---~~-~~--~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.|+++|++|+|||||+++|.+.. +. .. ..|.+..+..+... +..+++|||||++++......+++.+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999999743 22 11 22444444555555 78999999999998877777778899999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+.+... ....+.+. .+... ...|+++++||+|+..... .+++...+.... ..+++++++|++++.|++
T Consensus 82 ~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 82 VAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCCcCHH
Confidence 99976211 11111111 11111 1249999999999975421 122222222110 134689999999999999
Q ss_pred HHHHHHHH
Q 030193 168 EGLDWLSN 175 (181)
Q Consensus 168 ~~~~~i~~ 175 (181)
++++.+..
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=4.2e-25 Score=157.57 Aligned_cols=153 Identities=21% Similarity=0.234 Sum_probs=108.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCE-EEEEEEcCCCCC---------cccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDK---------IRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~---------~~~~~~~~ 81 (181)
...++|+++|++|||||||++++++..+. . ..+|.+.....+...+. .+.+|||||... +...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 34589999999999999999999998743 2 23455555555555554 899999999732 11111 12
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+..+|++++|+|++++.++..... +.+.+......++|+++|+||+|+....... ..+...+.+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIET-VEKVLKELGAEDIPMILVLNKIDLLDDEELE--------ERLEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcCcCCCCEEEEEEccccCChHHHH--------HHhhcCCCceEEEEcC
Confidence 467999999999998877665443 3333433333568999999999987543222 1122234578999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 030193 162 SGEGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l 177 (181)
++.|+++++++|.+.|
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
No 137
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=6.1e-25 Score=151.87 Aligned_cols=154 Identities=22% Similarity=0.221 Sum_probs=108.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc---cCcccceEEEEEEC---CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.|+++|++|+|||||+++|.+..+... ..|.......+... +..+++|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998876542 23444444455543 689999999999999888888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---hhCCCcc--CCcceEEEEcccCCCCCHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD---KLGLHSL--RQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~S~~~~~~i~ 167 (181)
|+++....+. ...+ ..+.. .++|+++|+||+|+.... .+.+.. .+..... ....++++++|+++|.|++
T Consensus 82 d~~~~~~~~~-~~~~-~~~~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQT-IEAI-KLAKA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHH-HHHH-HHHHH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 9986432111 1111 12222 468999999999987532 122211 1211111 1235689999999999999
Q ss_pred HHHHHHHHHhh
Q 030193 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~i~~~l~ 178 (181)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999987543
No 138
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=6.8e-25 Score=156.11 Aligned_cols=159 Identities=23% Similarity=0.310 Sum_probs=105.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEEEEECCEEEEEEEcCC-----------CCCccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~ 82 (181)
...++|+++|++|+|||||+++|.+..+.. ..|+.......+... .+++||||| ++.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999887642 344443333344433 689999999 345555555554
Q ss_pred c----cccEEEEEEECCCcccH----H-----HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCC-
Q 030193 83 Q----NTQGLIFVVDSNDRDRV----V-----EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH- 146 (181)
Q Consensus 83 ~----~~d~~i~v~d~~~~~s~----~-----~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~- 146 (181)
. .++++++|+|......+ . .....+...+.. .++|+++|+||+|+.... ..+++...++..
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 46788999998643221 0 111222233332 478999999999986543 234445544432
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..+..+.+++++||++| |+++++++|.+.+..
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 11222336899999999 999999999998754
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=3.6e-24 Score=145.81 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=112.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EEECC--EEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.+..+. ...++....... +...+ +.+.+||+||+..+...+..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999998854 334454444433 55666 8899999999999988888888899999999
Q ss_pred EECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 92 VDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 92 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+|+... .++......+...+......+.|+++++||+|+.......+....+.... ..+++++||+++.|+++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLN----GEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhcc----CCceEEeecCCCCCHHHHH
Confidence 998766 56655553333333322223789999999999976543333333332221 2358999999999999999
Q ss_pred HHHH
Q 030193 171 DWLS 174 (181)
Q Consensus 171 ~~i~ 174 (181)
++|.
T Consensus 157 ~~l~ 160 (161)
T TIGR00231 157 KIVE 160 (161)
T ss_pred HHhh
Confidence 9864
No 140
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=3.8e-24 Score=150.45 Aligned_cols=156 Identities=24% Similarity=0.249 Sum_probs=114.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccccc-------------------CcccceEEEEEECCEEEEEEEcCCCCCcccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-------------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 79 (181)
+|+++|.+|+|||||+++|.+....... .+.......+......+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999887654321 122333445566788999999999999888888
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcc-------
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSL------- 148 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~------- 148 (181)
.+++.+|++++|+|+.+..+.. ..+.+ ..... .+.|+++|+||+|+..+.... ++...+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~-~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHL-RIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHH-HHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 8899999999999998655432 22222 23332 479999999999998643322 23333332211
Q ss_pred --CCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 149 --RQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 149 --~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.....+++++|+++|.|++++++++.+.+..
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 2346789999999999999999999988753
No 141
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=1.6e-23 Score=142.95 Aligned_cols=143 Identities=21% Similarity=0.202 Sum_probs=106.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------cccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~~~~ 85 (181)
++|+++|++|+|||||++++.+.... ...+ +.......+...+.++++|||||...+... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999988743 2223 333334456667889999999997655432 22355789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
|++++|+|+.++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++|++++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998766655443322 257999999999998764332 1223345799999999999
Q ss_pred HHHHHHHHHHHh
Q 030193 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~~~~~i~~~l 177 (181)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 142
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=9.8e-24 Score=160.61 Aligned_cols=156 Identities=15% Similarity=0.225 Sum_probs=109.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccccc----CcccceEEEEEECCEEEEEEEcCCCCC-ccccc-------cccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKNISFTVWDVGGQDK-IRPLW-------RHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~~-------~~~~ 82 (181)
.+..+|+++|.+|||||||+|+|++..+.... .|.+.....+..++.++.+|||||... +.... ..++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 45669999999999999999999998865322 233444455677888999999999743 22211 1236
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...++...+... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999754 455555555555543 24677889999998654 333343333211 1124689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
|.|+++++++|.+.+..
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999987653
No 143
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=7.3e-24 Score=160.45 Aligned_cols=158 Identities=23% Similarity=0.221 Sum_probs=111.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEE-CCEEEEEEEcCCCCC-------ccccccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEY-KNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~-~~~~~~~~d~~g~~~-------~~~~~~~~~~~~d 86 (181)
..|+++|.||||||||++++.+.... .. ..|.......+.+ ...++++||+||... ....+...++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 57999999999999999999986533 22 3355666666666 457899999999532 1122333456799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCccCCcceEEEEcccCCCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++++|+|+++.++++....|..++... ....++|+++|+||+|+.+.....+ ....+ ....+++++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 999999999877777776665544321 1124689999999999975433221 11111 11223578999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030193 165 GLYEGLDWLSNNIAT 179 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~ 179 (181)
|+++++++|.+.+.+
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988754
No 144
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=1e-23 Score=156.36 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=104.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--cccC-cccceEEE-EEECCEEEEEEEcCCCCCccc--------cccccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNVET-VEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQ 86 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~--~~~~-t~~~~~~~-~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~d 86 (181)
+|+++|.+|+|||||+|+|++..+. +..| |+...... ....+.++.+|||||...... ....+++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998764 2222 33333222 334567899999999653211 1334568899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh-CCCccCCcceEEEEcccCCCCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL-GLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+ ....+ .+++++||++|.|
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~----~~v~~iSA~~g~g 151 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDF----KDIVPISALTGDN 151 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCC----CceEEEecCCCCC
Confidence 999999998766553 334444443 468999999999987433222222111 11111 1689999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++++++.+.+..
T Consensus 152 i~~L~~~l~~~l~~ 165 (270)
T TIGR00436 152 TSFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999987653
No 145
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=1.3e-23 Score=166.64 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=109.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCC----------Cccccc-cc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD----------KIRPLW-RH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~-~~ 80 (181)
..++|+++|.+|+|||||+|+|++.... +..+ |.+.....+...+..+.+|||||.. .|.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999999998753 3333 3334445566778889999999952 222222 23
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+|++++|+|+++..+++... ++..... .+.|+++|+||+|+.+.....................+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 568899999999999877766553 3333222 47899999999999754322222221111111112347889999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
++|.|++++|+.+.+.+.
T Consensus 365 k~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 365 KTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=8.2e-24 Score=161.35 Aligned_cols=150 Identities=21% Similarity=0.224 Sum_probs=108.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEE-CCEEEEEEEcCCCC---------Cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQD---------KIRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~~~d~~g~~---------~~~~~~~~~~ 82 (181)
..++|+++|.+|+|||||+|+|++.... + ..+|.+.....+.. .+..+.+|||+|.. .|+..+. .+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HH
Confidence 4589999999999999999999998743 2 24577777777777 46899999999962 2333222 35
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.++|++++|+|++++.++..... |...+......+.|+++|+||+|+.+....... .. ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~---~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEPRIERL---EE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChHhHHHH---Hh------CCCCEEEEEccC
Confidence 78999999999998876655433 334444333347899999999998753222111 11 112578999999
Q ss_pred CCCHHHHHHHHHHH
Q 030193 163 GEGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~~i~~~~~~i~~~ 176 (181)
|.|+++++++|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 147
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=3.9e-24 Score=144.42 Aligned_cols=150 Identities=27% Similarity=0.404 Sum_probs=113.2
Q ss_pred EEcCCCCChHHHHhhhhcCCc-cc-ccCcccceEEEEEEC----CEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 22 MVGLDAAGKTTILYKLKLGEI-VT-TIPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 22 v~G~~~~GKSsli~~l~~~~~-~~-~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
++|++|+|||||++++.+... .. ..++. ......... ...+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999887 33 33343 554444443 688999999999888887788889999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
++.++.....++..........++|+++++||+|+......+...... .......++++++|++++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE--QLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH--HHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 988888887774444444444689999999999987654433321000 11122356899999999999999999875
No 148
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=7.7e-24 Score=149.71 Aligned_cols=156 Identities=21% Similarity=0.126 Sum_probs=103.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC----Ccc----c--ccCcccceEEEEEEC--------------CEEEEEEEcCCCCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG----EIV----T--TIPTIGFNVETVEYK--------------NISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~----~~~----~--~~~t~~~~~~~~~~~--------------~~~~~~~d~~g~~~ 73 (181)
++|+++|++|+|||||+++|++. .+. + ...|.+.....+.+. +..+++||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 1 123444444444333 68999999999976
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC--c
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH--S 147 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~--~ 147 (181)
+........+.+|++++|+|+.+....+....+. .... .+.|+++|+||+|+...... +++...+... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444444456789999999998643333222221 1111 25799999999998754322 2222221111 0
Q ss_pred cCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
....+++++++|+++|.|++++++++.+++.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1123568999999999999999999998764
No 149
>PLN00023 GTP-binding protein; Provisional
Probab=99.91 E-value=8.1e-24 Score=157.32 Aligned_cols=123 Identities=21% Similarity=0.380 Sum_probs=101.1
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEE---------------CCEEEEEEEcCCCC
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY---------------KNISFTVWDVGGQD 72 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~---------------~~~~~~~~d~~g~~ 72 (181)
..+....+||+++|+.|||||||+++|.+..+. ...+|.+..+ ..+.+ ..+.++|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 345577899999999999999999999998876 4567777654 22332 24789999999999
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCCCCC
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piivv~nK~D~~~~ 133 (181)
+|+.++..++++++++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+...
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999888777654321 135899999999999653
No 150
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=2.2e-24 Score=145.33 Aligned_cols=134 Identities=21% Similarity=0.240 Sum_probs=92.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCC-----CcccccccccccccEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-----~~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|+|||||+++|.+..+. ..+|.+. ++.. .+||+||+. .+..... .++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAV-----EYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeE-----EEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999988752 3334322 2222 789999972 2333333 4689999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
++++.++.. ..|.... ..|+++|+||+|+.+.. ..++......... ..+++++||++|.|+++++++
T Consensus 72 ~~~~~s~~~--~~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFP--PGFASIF------VKPVIGLVTKIDLAEADVDIERAKELLETAG----AEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCC--hhHHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHcC----CCcEEEEecCCCCCHHHHHHH
Confidence 998887644 2333322 24999999999986532 2222222111111 126899999999999999998
Q ss_pred HH
Q 030193 173 LS 174 (181)
Q Consensus 173 i~ 174 (181)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.2e-23 Score=166.68 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=108.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC--------ccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~ 82 (181)
...++|+++|.+|||||||+|+|++.... ...| |.+.....+.+.+..+.+|||||.+. +...+..++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 34579999999999999999999987643 2233 33344455667788999999999763 333455677
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++|+|+|+++..++. ...+...+.. .++|+++|+||+|+..... +....... .+. ..+++||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~--~~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~-g~~----~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATAT--DEAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL-GLG----EPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc-CCC----CeEEEEcCC
Confidence 8999999999998765543 2334444443 4799999999999864321 11111111 111 236899999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
|.|++++++++.+.+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999987753
No 152
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=1.6e-23 Score=142.96 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=101.9
Q ss_pred EEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCCccc--------ccccccccccEE
Q 030193 21 LMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGL 88 (181)
Q Consensus 21 ~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~d~~ 88 (181)
+++|.+|+|||||++++.+... ....+ |.+.........+..+.+|||||+..+.. .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4789999999999999998763 22222 33444556667789999999999887554 334566889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
++|+|+.+..+... ..+...+.. .+.|+++|+||+|+.......+....+. . .+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~---~----~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLG---F----GEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcC---C----CCeEEEecccCCCHHH
Confidence 99999976443322 233344443 3699999999999876433211111111 1 1478999999999999
Q ss_pred HHHHHHHHh
Q 030193 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~l 177 (181)
+++++.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998754
No 153
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=2.1e-23 Score=142.67 Aligned_cols=146 Identities=22% Similarity=0.210 Sum_probs=102.6
Q ss_pred EEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc------cccccc--cccEEEE
Q 030193 22 MVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYFQ--NTQGLIF 90 (181)
Q Consensus 22 v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~~--~~d~~i~ 90 (181)
++|++|+|||||++++.+..+. ...+ |.+.....+...+..+.+|||||+..+... +..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5799999999999999987633 3333 444555667777789999999998776542 444554 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|+|+.++.... .++.... . .++|+++|+||+|+.+..........+ .+..+++++++|++++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~-~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLL-E---LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHH-H---cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence 99998754322 2232222 2 368999999999997643222111111 11123578999999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
+++.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988653
No 154
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.1e-23 Score=142.35 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCc------cccccccc--cccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI------RPLWRHYF--QNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~~~~~--~~~d 86 (181)
|+|+++|.||+|||||+|+|++.... .+.| |.+.....+...+..+.++|+||.... +.....++ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 68999999999999999999999854 4444 666677788889999999999994222 12233333 5799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
++++|+|+++.+ .......+... .++|+++++||+|..... ..+.+.+.++ +|++++||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------VPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT--------S-EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC--------CCEEEEEeCC
Confidence 999999997643 33333333333 479999999999986543 3445555554 4799999999
Q ss_pred CCCHHHHHHHH
Q 030193 163 GEGLYEGLDWL 173 (181)
Q Consensus 163 ~~~i~~~~~~i 173 (181)
+.|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 155
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.9e-23 Score=146.96 Aligned_cols=145 Identities=22% Similarity=0.234 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc--CCccccc-----------------CcccceEEEEEECCEEEEEEEcCCCCCccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL--GEIVTTI-----------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~--~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 78 (181)
.+|+++|++++|||||+++|++ ..+.... .+.......+..++..+++||+||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999987 3333211 12223334567788999999999999999999
Q ss_pred ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC-CC-ccCCcce
Q 030193 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG-LH-SLRQRHW 153 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~-~~-~~~~~~~ 153 (181)
..+++.+|++++|+|+.+.. +.....++... .. .++|+++|+||+|+..... .+++...+. .. ...+.++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~-~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKA-LE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999997632 22222333322 22 3689999999999965322 122222221 11 1123467
Q ss_pred EEEEcccCCCCCHH
Q 030193 154 YIQSTCATSGEGLY 167 (181)
Q Consensus 154 ~~~~~S~~~~~~i~ 167 (181)
+++++|+++|.|+.
T Consensus 158 ~iv~~Sa~~g~~~~ 171 (194)
T cd01891 158 PVLYASAKNGWASL 171 (194)
T ss_pred CEEEeehhcccccc
Confidence 89999999997763
No 156
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=6.5e-23 Score=160.52 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=109.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------ccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 82 (181)
+..++|+++|++|+|||||+|+|++... .+..| |.+.....+...+..+++|||||...+... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 5789999999999999999999998753 33344 334445567778899999999998655432 23567
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.++... |+... .. .++|+++|+||+|+... ..+++.+ ..+.+++++|+++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~-~~---~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDL-NK---SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHH-hh---CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec
Confidence 899999999999988776554 44433 22 46899999999998654 2222211 1234678999998
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
.|++++++.+.+.+.+
T Consensus 346 -~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 -LKIKALVDLLTQKINA 361 (442)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 6999999998887654
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=3.8e-23 Score=162.57 Aligned_cols=146 Identities=21% Similarity=0.291 Sum_probs=110.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------ccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 82 (181)
+..++|+++|.+|+|||||+|+|++... .+..+ |.+.....+...+..+.+|||||...+... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4678999999999999999999998764 33333 455556667778899999999998654432 22356
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.++... ..|.. ..+.|+++|+||+|+.+..... .....+++++|+++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~-~~l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDD-EILEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHH-HHHHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 889999999999988776543 33333 2478999999999997542221 11234688999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
|.|++++++++.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 158
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1e-23 Score=146.76 Aligned_cols=152 Identities=22% Similarity=0.198 Sum_probs=104.4
Q ss_pred EEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEEC-CEEEEEEEcCCCCC----cccc---cccccccccEEEE
Q 030193 22 MVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQGLIF 90 (181)
Q Consensus 22 v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~-~~~~~~~d~~g~~~----~~~~---~~~~~~~~d~~i~ 90 (181)
++|++|||||||++++.+.... .. ..|.+.....+... +..+.+||+||... .+.. +..+++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999998642 11 22444444556667 88999999999632 2222 2334678999999
Q ss_pred EEECCCc------ccHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEc
Q 030193 91 VVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
|+|+.++ .++.....+......... ..+.|+++|+||+|+.......+... .........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELV---RELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHH---HHHhcCCCCCEEEE
Confidence 9999877 456555555544433221 14689999999999976544333311 01112234568999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030193 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~ 176 (181)
|++++.|++++++++.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 159
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=2.2e-23 Score=150.13 Aligned_cols=162 Identities=29% Similarity=0.388 Sum_probs=120.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEEEEE--C--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--K--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||+++|.++.+.. ..+|....+..... . ...+.+||++|+++++..+..|+.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999999884 44555544433222 1 46799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhh----------CCCccC-CcceEEEEcc
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKL----------GLHSLR-QRHWYIQSTC 159 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~----------~~~~~~-~~~~~~~~~S 159 (181)
+|.....++....+.|...+........|+++|+||+|+....... .+...+ ...... .....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 9999866666666666655555443579999999999997653211 111110 000000 1123378999
Q ss_pred cC--CCCCHHHHHHHHHHHhh
Q 030193 160 AT--SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~--~~~~i~~~~~~i~~~l~ 178 (181)
++ .+.++.+++..+...+.
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHH
Confidence 99 99999999999988775
No 160
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=4.4e-23 Score=156.10 Aligned_cols=156 Identities=24% Similarity=0.240 Sum_probs=109.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECC-EEEEEEEcCCCCCc----ccc---ccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPL---WRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~----~~~---~~~~~~~~d 86 (181)
..|+++|.+|||||||++++.+.... .. ..|.......+...+ .++++||+||.... ... +...+..++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 58999999999999999999987632 11 235555555666666 89999999996422 122 223345799
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 87 GLIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
++++|+|+++. .+++....+..++... ....+.|+++|+||+|+.+....+++.+.+.. ..+++++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999875 4555655444333221 12246899999999999765444444333321 1235789999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
++|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998865
No 161
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.90 E-value=5e-23 Score=146.57 Aligned_cols=157 Identities=26% Similarity=0.381 Sum_probs=114.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEE----CCEEEEEEEcCCCCCcccccccccccc-cEEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~-d~~i~v~d 93 (181)
+|+++|++|||||||+++|.+..+....+++..+...+.. .+..+++||+||+.+++..+..+++.+ +++|||+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998876555544444433333 367899999999999999888889998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhh-----------CC--------------
Q 030193 94 SNDR-DRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKL-----------GL-------------- 145 (181)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~-----------~~-------------- 145 (181)
+.+. .++.....++..++... ...++|+++++||+|+......+.++..+ ..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9887 67777777776654422 12579999999999987543222111111 00
Q ss_pred ------C--ccC--CcceEEEEcccCCCC-CHHHHHHHHHH
Q 030193 146 ------H--SLR--QRHWYIQSTCATSGE-GLYEGLDWLSN 175 (181)
Q Consensus 146 ------~--~~~--~~~~~~~~~S~~~~~-~i~~~~~~i~~ 175 (181)
. .+. ...+.++++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 011 235779999998876 69999998865
No 162
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=3.2e-22 Score=138.56 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=104.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCccc-----------ccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWRHY 81 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~~ 81 (181)
.++|+++|++|+|||||++++++.... ...+ +.......+...+..+.+||+||..+... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999987632 2222 22333344566778899999999754311 01234
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+..+|++++|+|+.++.+.... . +...... .+.|+++++||+|+.+. ...+++........-.....+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-R-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-H-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 5689999999999887665432 2 2222222 36899999999999765 23333333332111111235799999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 030193 160 ATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~ 176 (181)
++++.|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 163
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=9.3e-23 Score=160.43 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=109.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCccccc-----------cc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW-----------RH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-----------~~ 80 (181)
..++|+++|.+|+|||||+|+|++.... ...+ |.+.....+...+..+.+|||||..++.... ..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 4589999999999999999999987632 2222 3333345566677899999999976544321 23
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+++.+|++++|+|+++..+.+.. .+...... .+.|+++|+||+|+. +....+++...+......-..++++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL--RIAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH--HHHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 56889999999999876554332 23333332 468999999999997 3222334433332211111346899999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
|++|.|++++++++.+...
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988654
No 164
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=1e-23 Score=148.54 Aligned_cols=158 Identities=25% Similarity=0.217 Sum_probs=112.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--------------c-------ccCcccceEEEEE--ECCEEEEEEEcCCCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--------------T-------TIPTIGFNVETVE--YKNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~-------~~~t~~~~~~~~~--~~~~~~~~~d~~g~~ 72 (181)
+.++|+++|+.++|||||+++|+...-. . ..-|.......+. .....++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4679999999999999999999753311 0 1225566667777 788999999999999
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhh-CCCcc
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKL-GLHSL 148 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~-~~~~~ 148 (181)
.|.......+..+|++|+|+|+.+.-. ....+.+.. +.. .++|+++|+||+|+.... ..+++...+ .....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~-~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKI-LRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHH-HHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ceeecccceecccccceeeeecccccc-ccccccccc-ccc---cccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 999888888899999999999975432 222233333 332 478899999999998321 112222122 11112
Q ss_pred CC-cceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 149 RQ-RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~-~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.. ..++++++|+.+|.|++++++.+.+.+.
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22 3589999999999999999999998875
No 165
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=9.4e-23 Score=145.26 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=102.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc---c---cCcccceEEEEEEC---------------------------C----
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT---T---IPTIGFNVETVEYK---------------------------N---- 60 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~---~---~~t~~~~~~~~~~~---------------------------~---- 60 (181)
++|+++|+.|+|||||+.++.+..... . ..+....+..+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 589999999999999999997652110 0 11111111111110 2
Q ss_pred --EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030193 61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA- 137 (181)
Q Consensus 61 --~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~- 137 (181)
..+.+||+||++++...+...+..+|++++|+|+.++.........+... ... ...|+++|+||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999998888888888999999999998632111112222222 111 135799999999997533222
Q ss_pred ---HHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 138 ---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
++...+. ......++++++||++|+|++++++.+.+.+..
T Consensus 158 ~~~~i~~~~~--~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVK--GTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHh--ccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2222111 111234678999999999999999999987754
No 166
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=5.3e-22 Score=154.67 Aligned_cols=152 Identities=17% Similarity=0.222 Sum_probs=105.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCE-EEEEEEcCCCCCc--ccccc------cccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDKI--RPLWR------HYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~--~~~~~------~~~~~~ 85 (181)
++|+++|.+|+|||||+|+|++.... . ...|.+.....+...+. .+.+|||+|..+. ...+. ..++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999987643 2 23466666666766654 8899999997332 11122 235789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceE-EEEcccCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY-IQSTCATSGE 164 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 164 (181)
|++++|+|++++..+..... +..++......++|+++|+||+|+.+... ..+... . .+.+ ++++||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence 99999999998876655532 22233322224789999999999864321 111111 0 1112 4789999999
Q ss_pred CHHHHHHHHHHHhh
Q 030193 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~i~~~~~~i~~~l~ 178 (181)
|++++++++.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998875
No 167
>PTZ00099 rab6; Provisional
Probab=99.89 E-value=7.8e-23 Score=142.40 Aligned_cols=130 Identities=21% Similarity=0.354 Sum_probs=101.4
Q ss_pred cccCcccceEEE--EE--ECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC
Q 030193 44 TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (181)
Q Consensus 44 ~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (181)
.+.||.+..+.. +. .+.+.+.||||+|++++...+..+++++|++|+|||++++++|+....|+..+.... ..++
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~ 86 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDV 86 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 456788766643 33 345889999999999999999999999999999999999999999988887776543 2578
Q ss_pred eEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 120 VLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 120 piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
|+++|+||+|+.+.. ..++.... .+..++.+++|||++|.|++++|++|.+.+.+
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999996432 22222111 12234578999999999999999999988754
No 168
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=4.8e-22 Score=136.63 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=104.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc--c-Cc-ccceEEEEEECCEEEEEEEcCCCCCccc--------cccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT--I-PT-IGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~-~t-~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~ 84 (181)
..+|+++|++|+|||||++++.+...... . .+ .......+...+..+.+||+||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999998875321 1 12 2222233455668999999999754432 22344678
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+|++++|+|+.++ +.....++.+.+.. .+.|+++|+||+|+.. .....+....+... ....+++++|++++
T Consensus 83 ~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEeccC
Confidence 9999999999876 22333444444443 3689999999999873 33333333333221 11347899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030193 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~~~~~i~~~l 177 (181)
.|++++++.|.+.+
T Consensus 155 ~~~~~l~~~l~~~~ 168 (168)
T cd04163 155 ENVDELLEEIVKYL 168 (168)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998753
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=3.4e-22 Score=156.91 Aligned_cols=158 Identities=27% Similarity=0.293 Sum_probs=109.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCEEEEEEEcCCCCC----ccc---cccccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDK----IRP---LWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~----~~~---~~~~~~~~~d 86 (181)
..+|+++|.||||||||+|+|++.... . ...|.......++..+.++++||+||... ... ..-..+..++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 458999999999999999999987643 2 23466667777888889999999999522 111 1223457799
Q ss_pred EEEEEEECCCc----ccHHHHH---HHHHHHhcCC-------CCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCCccCCc
Q 030193 87 GLIFVVDSNDR----DRVVEAR---DELHRMLNED-------ELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLHSLRQR 151 (181)
Q Consensus 87 ~~i~v~d~~~~----~s~~~~~---~~~~~~~~~~-------~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~ 151 (181)
++++|+|+++. +.++... ..+..+.... ...+.|+++|+||+|+.+.....+. ...+ ...
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EAR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHc
Confidence 99999999752 2333332 2333332100 2246899999999999754333222 2222 223
Q ss_pred ceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 152 HWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++++++||+++.|+++++++|.+.+..
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999999999987653
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=3.4e-22 Score=157.27 Aligned_cols=148 Identities=22% Similarity=0.285 Sum_probs=107.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCC--------Cccccccccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~~d 86 (181)
+|+++|.+|+|||||+|+|++.... ...+ |.+.....+.+.+..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987642 2333 4555666777888999999999963 33444566778999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++++|+|+.+.. ......+.+++++ .++|+++|+||+|+.+..........++.. +++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~--~~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~~-------~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGL--TPEDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGFG-------EPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCC--CHHHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCCC-------CeEEEeCCcCCCh
Confidence 999999997532 3333444555544 468999999999987543221111112211 5789999999999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
+++++++.+.+.
T Consensus 149 ~~ll~~i~~~l~ 160 (429)
T TIGR03594 149 GDLLDAILELLP 160 (429)
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
No 171
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=4.3e-24 Score=143.44 Aligned_cols=154 Identities=18% Similarity=0.347 Sum_probs=130.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE----EEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+.-||++|+|..++||||+|.+++.+-|. ++..|++..+ ..+.+++++..+||++|+++|......|++++...+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 56789999999999999999999988887 5566777654 235667889999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+||.-++..||+...+|..+...+. .++|.++|.||+|+.+.. +.+-+.+.+..+ ++-+|++...
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R--------lyRtSvked~ 167 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR--------LYRTSVKEDF 167 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh--------hhhhhhhhhh
Confidence 9999999999999999998887654 479999999999998642 334444555444 4569999999
Q ss_pred CHHHHHHHHHHHhh
Q 030193 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~i~~~~~~i~~~l~ 178 (181)
|+..+|.+|.+++.
T Consensus 168 NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLT 181 (246)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999998764
No 172
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=4.8e-22 Score=156.64 Aligned_cols=147 Identities=23% Similarity=0.306 Sum_probs=104.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC--------cccccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~~~ 85 (181)
++|+++|.+|+|||||+|+|.+.... ...+ |.+.....+.+.+..+.+|||||.+. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987742 2233 44556666778889999999999876 233345567889
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
|++++|+|+.+..+ ....++..++.+ .+.|+++|+||+|+.+.. +........ .+. .++++||++|.|
T Consensus 82 d~il~vvd~~~~~~--~~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~l-g~~----~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLT--PADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSL-GLG----EPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCC--HHHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhc-CCC----CCEEEEeeCCCC
Confidence 99999999976432 222333344443 368999999999975421 111111111 111 367899999999
Q ss_pred HHHHHHHHHHH
Q 030193 166 LYEGLDWLSNN 176 (181)
Q Consensus 166 i~~~~~~i~~~ 176 (181)
++++++.+.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=2.2e-22 Score=142.51 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=104.8
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcCCc-ccccCcccce--EEEEEECCEEEEEEEcCCCC----------Ccc
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKNISFTVWDVGGQD----------KIR 75 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~~~~~~~d~~g~~----------~~~ 75 (181)
++..+.+..++|+++|++|+|||||++++++..+ ....++.+.. ...+. .+..+.+|||||.. .+.
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 3444557889999999999999999999999763 2333333221 11122 24789999999953 222
Q ss_pred ccccccccc---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcc
Q 030193 76 PLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (181)
Q Consensus 76 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
.....++.. .+++++|+|...+.... ..++...+.. .+.|+++++||+|+.+....+....... ..+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~--~~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~ 168 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKEL--DLQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGD 168 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHH--HHHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcC
Confidence 333334443 46888899987653322 2223333332 4689999999999875433222221111 1111114
Q ss_pred eEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 153 WYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 153 ~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.+++++|++++.|++++++.|.+.+..
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 578899999999999999999887754
No 174
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=1.1e-21 Score=157.98 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=110.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-c--CcccceEEEEEECCE-EEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++++|||||+++|.+..+... . .|.......+...+. .+++||||||+.|...+...+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4678999999999999999999998776532 2 244444555666544 89999999999999999988899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc--C--CcceEEEEcccCCCCCH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL--R--QRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~S~~~~~~i 166 (181)
|+|+++... ....+.+.. ... .++|+++++||+|+... ..+++...+....+ . ...++++++||++|.|+
T Consensus 165 VVda~dgv~-~qT~e~i~~-~~~---~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVM-PQTIEAISH-AKA---ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCC-HhHHHHHHH-HHH---cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 999975321 122222222 221 47899999999998643 23333332211111 0 12357999999999999
Q ss_pred HHHHHHHHH
Q 030193 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~i~~ 175 (181)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
No 175
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=1.1e-21 Score=158.48 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=109.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------ccc-ccC------cccce----EEEEEE-----CCEEEEEEEcCCCCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVT-TIP------TIGFN----VETVEY-----KNISFTVWDVGGQDK 73 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~-------~~~-~~~------t~~~~----~~~~~~-----~~~~~~~~d~~g~~~ 73 (181)
..|++++|+.++|||||+++|+... +.. ... +.+.. ...+.+ ..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111 111 11222 223333 238899999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQ 150 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~ 150 (181)
|...+..+++.+|++++|+|+++..+.+....|+.. .. .++|+++|+||+|+..... .+++...++..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~-~~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~---- 153 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLA-LE----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD---- 153 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHH-HH----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----
Confidence 999999999999999999999876665555444432 22 3689999999999864321 12333333321
Q ss_pred cceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 151 RHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 151 ~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
...++++||++|.|+++++++|.+.+..
T Consensus 154 -~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 -ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred -cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1247899999999999999999987754
No 176
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=3.2e-22 Score=137.12 Aligned_cols=141 Identities=22% Similarity=0.227 Sum_probs=93.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccc----cccccccccEEEEEEEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL----WRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----~~~~~~~~d~~i~v~d~ 94 (181)
+|+++|.+|+|||||+|++.+..... .++.+. .+... .+||+||....... ....++++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-RKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-ccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 79999999999999999988754211 122221 22111 37999997322221 22336889999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
++..++.. .++... . .+.|+++++||+|+.+. ..+.+........ ...|++++|+++|.|++++++++.
T Consensus 75 ~~~~s~~~--~~~~~~-~----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRLP--AGLLDI-G----VSKRQIAVISKTDMPDA-DVAATRKLLLETG---FEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCcccccC--HHHHhc-c----CCCCeEEEEEccccCcc-cHHHHHHHHHHcC---CCCCEEEEECCCccCHHHHHHHHH
Confidence 87765422 233332 1 36799999999998653 3333333221111 124899999999999999999998
Q ss_pred HHhh
Q 030193 175 NNIA 178 (181)
Q Consensus 175 ~~l~ 178 (181)
+.+.
T Consensus 144 ~~~~ 147 (158)
T PRK15467 144 SLTK 147 (158)
T ss_pred Hhch
Confidence 8764
No 177
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=2.4e-22 Score=153.33 Aligned_cols=148 Identities=22% Similarity=0.275 Sum_probs=115.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--ccc--CcccceEEEEEECCEEEEEEEcCCCCCc---------cccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~---------~~~~~~~~~~ 84 (181)
..|+++|.||+|||||.|+|++.... +.. -|.+..+...++.+..|.++||+|-+.. +......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 67999999999999999999998854 333 3788888889999999999999995422 2334556678
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+|++|||+|. .++.+..++.+.++++. .++|+++|+||+|.... ++...++....+. .++++||.+|.
T Consensus 84 ADvilfvVD~--~~Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~---e~~~~efyslG~g----~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDG--REGITPADEEIAKILRR---SKKPVILVVNKIDNLKA---EELAYEFYSLGFG----EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeC--CCCCCHHHHHHHHHHHh---cCCCEEEEEEcccCchh---hhhHHHHHhcCCC----CceEeehhhcc
Confidence 9999999999 55567777888888774 46999999999997633 3333333333332 46789999999
Q ss_pred CHHHHHHHHHHHh
Q 030193 165 GLYEGLDWLSNNI 177 (181)
Q Consensus 165 ~i~~~~~~i~~~l 177 (181)
|+.+|++.+.+.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
No 178
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=1.4e-21 Score=133.21 Aligned_cols=151 Identities=25% Similarity=0.235 Sum_probs=105.2
Q ss_pred EEcCCCCChHHHHhhhhcCCcccc--cC--cccceEEEEEEC-CEEEEEEEcCCCCCcccc-------cccccccccEEE
Q 030193 22 MVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYK-NISFTVWDVGGQDKIRPL-------WRHYFQNTQGLI 89 (181)
Q Consensus 22 v~G~~~~GKSsli~~l~~~~~~~~--~~--t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~-------~~~~~~~~d~~i 89 (181)
++|++|+|||||++++.+...... .+ +........... ...+.+||+||...+... ...+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999998765421 11 323333333433 679999999997765433 334678899999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|+|+.+........ ++..... .+.|+++|+||+|+.......................+++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999876655543 2222222 57999999999999876544443221122222334678999999999999999
Q ss_pred HHHHHHHh
Q 030193 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~l 177 (181)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 179
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=1.7e-22 Score=132.21 Aligned_cols=110 Identities=22% Similarity=0.406 Sum_probs=80.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc---ccC--cccc--eEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT---TIP--TIGF--NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~---~~~--t~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
||+|+|++|||||||+++|.+..+.. ..+ .... ....+......+++||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761 111 2222 2222333344699999999999988887778999999999
Q ss_pred EECCCcccHHHHHHH--HHHHhcCCCCCCCeEEEEEeCCC
Q 030193 92 VDSNDRDRVVEARDE--LHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~piivv~nK~D 129 (181)
||++++.+++.+.++ |...+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999887554 22323221 14699999999998
No 180
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.3e-21 Score=150.42 Aligned_cols=153 Identities=25% Similarity=0.283 Sum_probs=105.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEEC-CEEEEEEEcCCCCC----cccccc---cccccccE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPLWR---HYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~----~~~~~~---~~~~~~d~ 87 (181)
.|+++|.||||||||++++++..+. . ...|...+...+... +.++++||+||... ...+.. ..+..+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987642 1 233555555566666 68999999999632 112222 23456999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 88 LIFVVDSNDR---DRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+++|+|+++. +.++....+...+.. .....++|+++|+||+|+.... ..+++.+.+. ++++++||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999754 455555443333222 1112478999999999984321 1122222222 4689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
+.|++++++++.+.+.+
T Consensus 312 geGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 312 GQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=2.1e-21 Score=159.90 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=112.7
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccc-c--CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+...|+++|+.++|||||+++|.+..+... . .|.......+.+.+..++|||||||+.|...+..+++.+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 35788999999999999999999988776532 1 23444445677778999999999999999999988899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-c-cC--CcceEEEEcccCCCCCH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-S-LR--QRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~S~~~~~~i 166 (181)
|+|+++... ....+.|.. ... .++|+++++||+|+... ..+++...+... . .. ...++++++||++|.|+
T Consensus 367 VVdAddGv~-~qT~e~i~~-a~~---~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVM-PQTIEAINH-AKA---AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCC-HhHHHHHHH-HHh---cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999976321 112222222 222 47999999999999653 223332222111 1 11 12478999999999999
Q ss_pred HHHHHHHHH
Q 030193 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~i~~ 175 (181)
++++++|..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999999875
No 182
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=1.8e-21 Score=146.02 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=105.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc--ccC-cccceEEE-EEECCEEEEEEEcCCCCCcc--------cccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP-TIGFNVET-VEYKNISFTVWDVGGQDKIR--------PLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~-t~~~~~~~-~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~ 83 (181)
+.-.|+++|++|||||||+|+|++..... ..+ |+...... ...++.++.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 34568999999999999999999987642 222 33332222 23355899999999964432 12233567
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+.. .....+....+... ....+++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999862 33344445555443 4689999999999973 23333332222211 0124689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
+.|++++++++.+.+.
T Consensus 156 ~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 156 GDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999998764
No 183
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=1e-21 Score=142.66 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=112.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC-cccceEE-EEEECCEEEEEEEcCCCCC--------cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNVE-TVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~-t~~~~~~-~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 83 (181)
+.--|+++|.||+|||||+|++.+.... +..| |+.-.+. .+..++.++.++||||--. +.......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 3456899999999999999999999975 3333 4444443 3455789999999999322 2223445568
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCC-CccCCcceEEEEcccC
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGL-HSLRQRHWYIQSTCAT 161 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~S~~ 161 (181)
.+|+++||+|+.+. +...+++..+.++. .+.|+++++||+|..+... ...+...+.. ..+. .++++||+
T Consensus 85 dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~----~ivpiSA~ 155 (298)
T COG1159 85 DVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFK----EIVPISAL 155 (298)
T ss_pred cCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcc----eEEEeecc
Confidence 89999999999753 34455666666654 4689999999999887655 3333332221 1121 68999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+|.|++.+.+.+..++.+
T Consensus 156 ~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 999999999999998764
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=2.4e-21 Score=152.68 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=108.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc-----------ccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~~ 80 (181)
..++|+++|.+|+|||||+|++++.... +..+ |.+.....+...+..+.+|||||..+.... ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 5799999999999999999999987632 3333 222223445567888999999996432211 123
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+|++++|+|+.+..+.+.. .+.....+ .+.|+++|+||+|+.+....+++...+..........+++++||
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 56789999999999876554432 23333332 46899999999999854333444333322211223468999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
++|.|++++++.+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887543
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2.2e-21 Score=160.33 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=110.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCC----------cccc-ccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~-~~~ 80 (181)
..++|+++|.+|+|||||+|+|++... .+..+ |.+.....+...+..+.+|||||..+ |... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 458999999999999999999999874 23333 33444455667788899999999532 1111 123
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+|++++|+|+++..+.+... .+..... .++|+++|+||+|+.+....+.+..............+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 467899999999998876665543 3333322 47899999999999764333333332221111112346788999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 186
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=4.7e-22 Score=139.09 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=95.4
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCc-ccccCcccc--eEEEEEECCEEEEEEEcCCCCC----------ccc
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF--NVETVEYKNISFTVWDVGGQDK----------IRP 76 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~--~~~~~~~~~~~~~~~d~~g~~~----------~~~ 76 (181)
...++++.++|+++|++|+|||||+|++++..+ ....++.+. ....+... ..+.+||+||... +..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence 345668899999999999999999999998863 222232221 11222222 3799999999532 222
Q ss_pred ccccccc---cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccC
Q 030193 77 LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLR 149 (181)
Q Consensus 77 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~ 149 (181)
....+++ .++++++|+|+.++-+.... .+.+.+.. .+.|+++++||+|+.+..+ .++++..+...
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--- 161 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD--- 161 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---
Confidence 2233444 36899999999764333222 33344433 4689999999999875432 23333333321
Q ss_pred CcceEEEEcccCCCCCHH
Q 030193 150 QRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~i~ 167 (181)
..+++++++||++|+|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 224579999999999974
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2.1e-21 Score=160.54 Aligned_cols=152 Identities=20% Similarity=0.228 Sum_probs=106.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC--------cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 83 (181)
...+|+++|.+|+|||||+|+|++.... ...| |.+.......+.+..+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 4578999999999999999999987643 2233 33333444566788999999999753 2333455678
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
.+|++++|+|+.+. +......+.+.+.. .++|+++|+||+|+..... .......+ .+. ..+++||++|
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~l-g~~----~~~~iSA~~g 421 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKL-GLG----EPYPISAMHG 421 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHc-CCC----CeEEEECCCC
Confidence 99999999999652 34444455555554 5799999999999864321 11111111 111 2468999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030193 164 EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~ 179 (181)
.|++++++++.+.+.+
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999987753
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=1e-21 Score=158.57 Aligned_cols=155 Identities=21% Similarity=0.156 Sum_probs=109.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc---c-cc--cCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEI---V-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~---~-~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.|+++|++++|||||+++|++... . +. ..|.+..+..+..++..+.+||+||+++|...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 4789999999999999999997442 2 11 2245555566777789999999999999998888888999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhH----HHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
+|+++... ....+.+ ..+.. .++| +++|+||+|+.+....+. +........+ ..+++++++|+++|.|+
T Consensus 81 VDa~~G~~-~qT~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 81 VDADEGVM-TQTGEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EECCCCCc-HHHHHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCc
Confidence 99986321 1111222 12222 3566 999999999986542222 2221111111 12468999999999999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
+++++.+.+.+.
T Consensus 155 ~eL~~~L~~l~~ 166 (581)
T TIGR00475 155 GELKKELKNLLE 166 (581)
T ss_pred hhHHHHHHHHHH
Confidence 999999877654
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=4.7e-21 Score=156.62 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=110.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-c--CcccceEEEEEE----CCEEEEEEEcCCCCCcccccccccccccE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~--~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+.++|+++|++++|||||+++|.+..+... . .|.....+.+.+ .+..+++|||||++.|...+..+++.+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 5778999999999999999999998776532 1 233333333332 35899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc-c-C--CcceEEEEcccCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-L-R--QRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~S~~~~ 163 (181)
+++|+|+.+....+. .+.+.. +.. .++|+++++||+|+... ..+++...+.... + . ...++++++||++|
T Consensus 322 aILVVDA~dGv~~QT-~E~I~~-~k~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQT-IEAINY-IQA---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhh-HHHHHH-HHh---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 999999976322211 122222 222 47899999999998753 2333333221110 0 1 12478999999999
Q ss_pred CCHHHHHHHHHHH
Q 030193 164 EGLYEGLDWLSNN 176 (181)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (181)
.|++++++++...
T Consensus 396 ~GIdeLle~I~~l 408 (742)
T CHL00189 396 TNIDKLLETILLL 408 (742)
T ss_pred CCHHHHHHhhhhh
Confidence 9999999998764
No 190
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=8.2e-21 Score=128.50 Aligned_cols=157 Identities=25% Similarity=0.336 Sum_probs=126.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc---------c-c---CcccceEEEEEECC-EEEEEEEcCCCCCccccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------T-I---PTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------~-~---~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~ 78 (181)
......||+|+|+.++||||++..+....... . . .|...++......+ ..+++++||||++|...|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 34678899999999999999999999877421 1 1 23445555555555 899999999999999999
Q ss_pred ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEc
Q 030193 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+.+++.++++++|.+.+..+ ....+.+++...+ .+|+++++||.|+.+....++++..+.... ...++++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence 9999999999999999988877 3334445555422 399999999999999999999988887663 34589999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030193 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~ 176 (181)
++.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999988765
No 191
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=1.5e-20 Score=152.21 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=109.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c---------cccc-------CcccceEEEEEE-----CCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I---------VTTI-------PTIGFNVETVEY-----KNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~---------~~~~-------~t~~~~~~~~~~-----~~~~~~~~d~~g~ 71 (181)
++..+++++|+.++|||||+.+|+... + .+.. -|.......+.+ +++.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456699999999999999999997631 1 1111 122222333433 3689999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~ 148 (181)
.+|...+..+++.+|++|+|+|+++....+....+ ..... .++|+++|+||+|+..... .+++...++..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~-~~~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-- 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV-YLALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-- 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH-HHHHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC--
Confidence 99999999999999999999999875544433332 22222 3689999999999864322 12333332221
Q ss_pred CCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
...++++||++|.|+++++++|.+.+..
T Consensus 158 ---~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 ---ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred ---cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1247899999999999999999987754
No 192
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=4.7e-21 Score=150.41 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=103.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc---------------------------c-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---------------------------T-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------------------~-------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++++|||||+++|+...-. + ..-|.+.....++.++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45789999999999999999999743200 0 1125556666777888
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-----
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----- 135 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----- 135 (181)
+.+.+|||||+++|.......+..+|++++|+|+.+..++.....+........ ...|+++++||+|+.+...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 999999999999887766666788999999999986322222222222333221 1357999999999975221
Q ss_pred -HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 136 -AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 136 -~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
.+++...+....+....++++++||++|.|++++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 1223332222223333568999999999999873
No 193
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1e-20 Score=145.96 Aligned_cols=159 Identities=23% Similarity=0.187 Sum_probs=105.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECC-EEEEEEEcCCCCCcc-------cccccccccccE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-ISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-~~~~~~d~~g~~~~~-------~~~~~~~~~~d~ 87 (181)
.|+++|.||||||||+|+|++.... +..| |.......+...+ ..+.++|+||...-. ...-..+..+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999987643 2222 4455555666665 469999999964211 112234678999
Q ss_pred EEEEEECC---CcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 88 LIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+++|+|++ +.+.+.....+...+... ....+.|+++|+||+|+.......+....+... . ....+++++||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEEECCCC
Confidence 99999987 344455444444333221 112368999999999987554333322222111 0 11125789999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030193 164 EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~ 179 (181)
.|++++++.|.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988753
No 194
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=143.48 Aligned_cols=151 Identities=20% Similarity=0.278 Sum_probs=112.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------ccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 82 (181)
++.++++++|.||+|||||+|.|++.+-. +..| |.+.-...++..++.+++.||+|-...... ....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 68999999999999999999999998843 5444 777888889999999999999995432222 22334
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|.++||+|++.+.+ ..+..+...+. .+.|+++|.||.|+..+.....+ + .. .+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~--~~d~~~~~~~~----~~~~~i~v~NK~DL~~~~~~~~~-~-~~------~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLD--KEDLALIELLP----KKKPIIVVLNKADLVSKIELESE-K-LA------NGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCc--hhhHHHHHhcc----cCCCEEEEEechhcccccccchh-h-cc------CCCceEEEEecC
Confidence 78999999999987522 22222222222 47899999999999876554433 1 11 122578999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
++|++.+.+.|.+.+..
T Consensus 361 ~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 361 GEGLDALREAIKQLFGK 377 (454)
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 99999999999887643
No 195
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.85 E-value=4e-20 Score=134.34 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=110.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc--------------cccc-------CcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI--------------VTTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~--------------~~~~-------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++...- .+.. .+.......+.+++.++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975321 0100 1233445667788999999999999999988
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhC----------
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG---------- 144 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~---------- 144 (181)
+..+++.+|++++|+|+.+.... ....+|.. +.. .++|+++++||+|+.... ..++++..+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~-~~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRL-LRK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHH-HHH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999865432 33344433 332 378999999999987421 1111111111
Q ss_pred ----------------------------------------------CCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 145 ----------------------------------------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 145 ----------------------------------------------~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.......-+|++-.||.++.|++.+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 0011233478999999999999999999999875
Q ss_pred h
Q 030193 179 T 179 (181)
Q Consensus 179 ~ 179 (181)
+
T Consensus 236 ~ 236 (237)
T cd04168 236 T 236 (237)
T ss_pred C
Confidence 4
No 196
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=7.3e-20 Score=132.79 Aligned_cols=149 Identities=21% Similarity=0.180 Sum_probs=101.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECCEEEEEEEcCCCCCcc-------cccccccccccEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 88 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~d~~ 88 (181)
+|+++|++|+|||||+++|.+.... .. ..|.+.....+.+.+..+++||+||..... .....+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999987642 22 234445555677789999999999974332 1233567899999
Q ss_pred EEEEECCCccc-HHHHHHHHH----------------------------------------HHhcCC-------------
Q 030193 89 IFVVDSNDRDR-VVEARDELH----------------------------------------RMLNED------------- 114 (181)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~------------- 114 (181)
++|+|++++.. ...+.+.+. .++.++
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999986542 222222221 111110
Q ss_pred ---------C--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 115 ---------E--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 115 ---------~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
. ..-+|+++|+||+|+.+..+.+. +.. ..+++++||+++.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR------QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 01258999999999875432221 111 12478899999999999999998875
No 197
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.85 E-value=3.2e-20 Score=149.85 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=114.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC--Ccccc-----------------cCcccceEEEEEECCEEEEEEEcCCCCCccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG--EIVTT-----------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~--~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 78 (181)
.+|+++|+.++|||||+++|+.. .+... ..|.......+.+.++.+++||||||.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999853 22110 113334456688899999999999999999999
Q ss_pred ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc--CCcce
Q 030193 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RQRHW 153 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~ 153 (181)
..+++.+|++++|+|+.+. .......+|..... .++|+++|+||+|+.+... .+++...+..... .+..+
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 9999999999999999753 23444555555443 4789999999999865321 2223332221111 22357
Q ss_pred EEEEcccCCCC----------CHHHHHHHHHHHhhh
Q 030193 154 YIQSTCATSGE----------GLYEGLDWLSNNIAT 179 (181)
Q Consensus 154 ~~~~~S~~~~~----------~i~~~~~~i~~~l~~ 179 (181)
+++.+|+++|. |++.+++.+.+.+..
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 89999999996 799999999988764
No 198
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.85 E-value=1.1e-20 Score=148.38 Aligned_cols=152 Identities=18% Similarity=0.113 Sum_probs=102.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--cc-------------------------c-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV-------------------------T-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|+.++|||||+.+|+... .. + ...|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 557899999999999999999997521 10 0 0124445556677788
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H-
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A- 136 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~- 136 (181)
..+++||+|||++|.......+..+|++++|+|+++.+++... ..+........ ...|+++++||+|+.+... .
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHH
Confidence 9999999999999887777777899999999999876422111 11111122211 2368999999999974221 1
Q ss_pred ---hHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 137 ---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+++...+....+....++++++||++|.|+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 22222222222233457899999999999986
No 199
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=4.5e-20 Score=141.01 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=115.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCC----------CCcccc-ccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQ----------DKIRPL-WRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~-~~~ 80 (181)
..++|+++|.||+|||||+|++++.+-. +..+ |.+.-...++..+.++.++||+|- +.|... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4699999999999999999999998854 3333 666666778888999999999993 223222 224
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcceEEEEc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
.+..+|++++|+|+..+ +...+..+..++.+ .+.++++|+||.|+.+. ...++....+....-.-...+++.+
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 45679999999999654 45556666666655 57999999999999875 3444444433322111123478899
Q ss_pred ccCCCCCHHHHHHHHHHHh
Q 030193 159 CATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~l 177 (181)
||+++.+++++++.+.+..
T Consensus 332 SA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred EecCCCChHHHHHHHHHHH
Confidence 9999999999999988754
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=2.5e-20 Score=150.00 Aligned_cols=153 Identities=22% Similarity=0.212 Sum_probs=103.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccccc-----CcccceEEEEEE----------------CCEEEEEEEcCCCCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY----------------KNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~t~~~~~~~~~~----------------~~~~~~~~d~~g~~~~ 74 (181)
+..-|+++|++++|||||+++|.+..+.... ++.+......+. +...+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 4567999999999999999999988765322 222222221111 1124889999999999
Q ss_pred ccccccccccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHh
Q 030193 75 RPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAA 137 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~ 137 (181)
...+..+++.+|++++|+|+++ +++++... .+.. .++|+++++||+|+.+.. ..+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 9999999999999999999986 33333322 2222 368999999999986421 001
Q ss_pred HHHh-----------hhCCCcc----------CCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 138 EITD-----------KLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 138 ~~~~-----------~~~~~~~----------~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
.+.. .+....+ ....++++++||++|+|++++++++...
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 1110 1111111 1125789999999999999999988653
No 201
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=1.4e-20 Score=146.72 Aligned_cols=159 Identities=19% Similarity=0.126 Sum_probs=104.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC------cccceEEEE--------------------EE------CCEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP------TIGFNVETV--------------------EY------KNIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------t~~~~~~~~--------------------~~------~~~~ 62 (181)
+..++|+++|++++|||||+++|.+.......+ |.+..+..+ +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999997643221111 111111110 01 1468
Q ss_pred EEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hH
Q 030193 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AE 138 (181)
Q Consensus 63 ~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~ 138 (181)
+++||+|||++|...+......+|++++|+|+.+........+.+. .+... ...|+++++||+|+.+.... ++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 9999999999998888888888999999999985321112222222 22211 13579999999999764322 22
Q ss_pred HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+...+. .....+++++++|+++|.|+++++++|...+.
T Consensus 159 i~~~l~--~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVK--GTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhh--hcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 222111 11123578999999999999999999988654
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.84 E-value=5.1e-20 Score=148.61 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=114.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--Ccccc-------------cC----cccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVTT-------------IP----TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~-------------~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
.+..+|+++|+.++|||||+++|+.. .+... .. |.......+.++++.+++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 35679999999999999999999862 22211 11 2223334567788999999999999999
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCC-Ccc-CC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL-HSL-RQ 150 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~-~~~-~~ 150 (181)
..+..+++.+|++++|+|+.+... .....+|..... .++|.++++||+|...... .+++...+.. ... .+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 999999999999999999975322 233344443333 4688999999999865432 2334333321 111 23
Q ss_pred cceEEEEcccCCCC----------CHHHHHHHHHHHhhh
Q 030193 151 RHWYIQSTCATSGE----------GLYEGLDWLSNNIAT 179 (181)
Q Consensus 151 ~~~~~~~~S~~~~~----------~i~~~~~~i~~~l~~ 179 (181)
..+|++.+|+++|. |+..+++.|.+.+..
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 46889999999998 589999999987764
No 203
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=4.1e-20 Score=130.57 Aligned_cols=145 Identities=18% Similarity=0.116 Sum_probs=97.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc------------ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
.++|+++|+.++|||||+++|++... .+. .-|.+.....++.++..+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999975310 000 11333334455667789999999999888877
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCccCCc
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLRQR 151 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 151 (181)
....+..+|++++|+|+... ...........+.. .++| +++++||+|+....+. + ++...+....+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g--~~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDG--PMPQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 77778899999999999753 22222223333333 3565 7899999998643221 1 23333322223334
Q ss_pred ceEEEEcccCCCCCH
Q 030193 152 HWYIQSTCATSGEGL 166 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i 166 (181)
+++++++|+.+|.|.
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 688999999999885
No 204
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=3.7e-20 Score=149.74 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=99.0
Q ss_pred cCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc------ccccc--ccccEEEEEE
Q 030193 24 GLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVV 92 (181)
Q Consensus 24 G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~--~~~d~~i~v~ 92 (181)
|.+|+|||||+|++.+.... .+.| |.+.....++.++.++++||+||+..+... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999988753 4444 333444566778889999999998776543 23333 3689999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+++.+. ...+..+... .++|+++|+||+|+.+.... +++.+.+ +++++++||++|.|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 9986432 2222333222 47999999999998653322 2222222 35799999999999999
Q ss_pred HHHHHHHHh
Q 030193 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~l 177 (181)
+++++.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998753
No 205
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=1.1e-19 Score=150.41 Aligned_cols=147 Identities=20% Similarity=0.203 Sum_probs=105.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc----------ccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~~ 82 (181)
+.++|+++|.+|+|||||+|++++.... .+.| |.+.....+...+.+++++|+||+..+... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3578999999999999999999987643 2233 444455567778899999999998766432 11232
Q ss_pred --ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCccCCcceEEE
Q 030193 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 156 (181)
..+|++++|+|+++.++. ..++... .+ .++|+++++||+|+.+.... +++.+.+ +++++
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql-~e---~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L--------G~pVv 146 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQL-LE---LGIPCIVALNMLDIAEKQNIRIDIDALSARL--------GCPVI 146 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHH-HH---cCCCEEEEEEchhhhhccCcHHHHHHHHHHh--------CCCEE
Confidence 478999999999875432 2233333 32 47999999999998654332 2222222 35789
Q ss_pred EcccCCCCCHHHHHHHHHHHh
Q 030193 157 STCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~l 177 (181)
++|+++++|++++.+.+.+..
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999988754
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=4.5e-20 Score=131.95 Aligned_cols=146 Identities=18% Similarity=0.119 Sum_probs=93.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-c---------------------------------ccCcccceEEEEEECCEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-T---------------------------------TIPTIGFNVETVEYKNISFT 64 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~---------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++|+|||||+++|+...-. . ..-|.+.....+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999753210 0 01133444455667788999
Q ss_pred EEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhh
Q 030193 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDK 142 (181)
Q Consensus 65 ~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~ 142 (181)
+|||||+++|...+...++.+|++++|+|+.+... ........++... ...++++|+||+|+.+... ..++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL--EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc--HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887666667789999999999976421 1111122222221 1246888999999875321 1112111
Q ss_pred hC--CCccCCcceEEEEcccCCCCCHHH
Q 030193 143 LG--LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 143 ~~--~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+. ...+.-..++++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 11 011111134689999999999875
No 207
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=1.9e-20 Score=134.92 Aligned_cols=146 Identities=20% Similarity=0.192 Sum_probs=97.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC---------------------------cccc-------cCcccceEEEEEECCEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE---------------------------IVTT-------IPTIGFNVETVEYKNISFT 64 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~---------------------------~~~~-------~~t~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++++|||||+.+|+... +.+. .-|.+.....+...+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999995321 0011 1144445566778899999
Q ss_pred EEEcCCCCCcccccccccccccEEEEEEECCCcc------cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----C
Q 030193 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----M 134 (181)
Q Consensus 65 ~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~ 134 (181)
+||+||+..|...+...++.+|++++|+|+++.. ........+. ..... ...|+++++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 9999999888777777778899999999998631 1111222222 22221 23689999999999732 1
Q ss_pred CHhHHHh----hhCCCccCCcceEEEEcccCCCCCHH
Q 030193 135 NAAEITD----KLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 135 ~~~~~~~----~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
..+++.. .+........+++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1222222 22222223346889999999999986
No 208
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=125.04 Aligned_cols=161 Identities=16% Similarity=0.261 Sum_probs=112.3
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcCC-cc--cccC--cccceEEEEEECCEEEEEEEcCCC----------CC
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE-IV--TTIP--TIGFNVETVEYKNISFTVWDVGGQ----------DK 73 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~----------~~ 73 (181)
+...|.+...-|+++|.+|+|||||||+++++. .. +..| |...+++.++.+ +.+.|+||. +.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHH
Confidence 345566788999999999999999999999966 33 3333 444555555433 899999994 23
Q ss_pred ccccccccccc---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC
Q 030193 74 IRPLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH 146 (181)
Q Consensus 74 ~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~ 146 (181)
+......|++. ..++++++|+- +.....+..+.+++.. .++|+++++||+|.....+. ..++..+...
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r--~~~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDAR--HPPKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECC--CCCcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 33444555543 56788899984 4455666666666665 57999999999999876444 3344444333
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.... .+ ++..|+.++.|++++...|.+.+..
T Consensus 168 ~~~~-~~-~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDD-QW-VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCcc-ce-EEEEecccccCHHHHHHHHHHHhhc
Confidence 2211 11 6678999999999999999887653
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=3.5e-20 Score=122.67 Aligned_cols=136 Identities=23% Similarity=0.261 Sum_probs=95.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCC----CCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~----~~~~~~~~~~~~~~d~~i~v~d 93 (181)
-||+++|+.|+|||||+++|.+.+. .+..|..+.+ . =.++||||. ..+.........++|.+++|.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~-----~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEY-----Y---DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEe-----c---ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 4799999999999999999999775 3333433322 1 134899994 2344444444568999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
++++.+. ....+... .+.|+|-|+||+|+. +....+...+.+.....+ .+|++|+.+|+|+++|.++
T Consensus 73 at~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 73 ATEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 9876432 11122222 358999999999998 444555555555555444 3689999999999999998
Q ss_pred HH
Q 030193 173 LS 174 (181)
Q Consensus 173 i~ 174 (181)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 210
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.82 E-value=1.1e-19 Score=141.73 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=102.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc------cCcccceEEEEEE--------------C------------CEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVETVEY--------------K------------NIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~t~~~~~~~~~~--------------~------------~~~ 62 (181)
...++|+++|+.++|||||+.+|.+...... .-|....+....+ . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 4578999999999999999999976422111 1122221111000 0 268
Q ss_pred EEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----H
Q 030193 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----E 138 (181)
Q Consensus 63 ~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~ 138 (181)
+++||+||+++|..........+|++++|+|+.++..-......+.. +... ...|+++|+||+|+.+..... +
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~-l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA-LDII--GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc--CCCcEEEEEEeeccccchhHHHHHHH
Confidence 99999999998877666666678999999999854211111222221 2211 124789999999997643322 2
Q ss_pred HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+...+.. ....+++++++||++|.|++++++.|.+.+.
T Consensus 164 i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 164 IKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 2221111 1123568999999999999999999988654
No 211
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.82 E-value=1.1e-19 Score=147.43 Aligned_cols=153 Identities=20% Similarity=0.119 Sum_probs=103.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc---c---ccCcccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV---T---TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~---~---~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
-|+++|+.++|||||+++|.+.... . ...|.+..+..+.. .+..+++||+|||++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 5889999999999999999974422 1 13355554444443 356789999999999987777778999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhHHH----hhhCCCccCCcceEEEEcccCCCCCH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEIT----DKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
+|+.+... ....+. ..++.. .++| +++|+||+|+.++...++.. ..+....+ ...+++++|+++|.|+
T Consensus 82 Vda~eg~~-~qT~eh-l~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~--~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 82 VACDDGVM-AQTREH-LAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGF--AEAKLFVTAATEGRGI 154 (614)
T ss_pred EECCCCCc-HHHHHH-HHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEeCCCCCCC
Confidence 99975211 111222 223322 2344 68999999997643333222 22211111 2357999999999999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
+++++.|.+...
T Consensus 155 ~~L~~~L~~~~~ 166 (614)
T PRK10512 155 DALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHHhhc
Confidence 999999987543
No 212
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.82 E-value=3.4e-19 Score=143.82 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=102.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC-----cccceEEEEEE------CC-----E-----EEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY------KN-----I-----SFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----t~~~~~~~~~~------~~-----~-----~~~~~d~~g~~~ 73 (181)
.+...|+++|++++|||||++++.+.......+ +.+........ .. . .+++|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 567789999999999999999998766443222 23322221111 00 1 278999999999
Q ss_pred cccccccccccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A 136 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--------------~ 136 (181)
|...+...+..+|++++|+|+++ ++++.... .+.. .++|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99998888899999999999986 44443332 2222 4789999999999852100 0
Q ss_pred h-----------HHHhhhCCCccC----------CcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 137 A-----------EITDKLGLHSLR----------QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 137 ~-----------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
. ++...+....+. ...++++++|+++|+|++++++.+..
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 011111111111 13578999999999999999988864
No 213
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=2.4e-19 Score=129.16 Aligned_cols=152 Identities=24% Similarity=0.249 Sum_probs=100.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccccc-----------------Cc-------ccce-----------------EEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-----------------PT-------IGFN-----------------VETVE 57 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~t-------~~~~-----------------~~~~~ 57 (181)
||+++|+.++|||||+++|..+.+.... .| .++. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999865442100 00 0011 01233
Q ss_pred ECCEEEEEEEcCCCCCcccccccccc--cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030193 58 YKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..+..++++|+||+++|.......+. .+|++++|+|+.... ......+..++.. .++|+++|+||+|+.++..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45678999999999988766554443 689999999986532 3333334444443 4689999999999876433
Q ss_pred Hh----HHHhhhCCCcc---------------------CCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 136 AA----EITDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 ~~----~~~~~~~~~~~---------------------~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.. ++...+..... .....|+|.+|+.+|+|++++...|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 22 23333332111 122458999999999999999987754
No 214
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.4e-20 Score=122.61 Aligned_cols=163 Identities=33% Similarity=0.581 Sum_probs=135.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
.+.=|++++|--|+|||||++.|..+......||.......+.+.+.+++-+|.+||..-+..|..|+..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 34668999999999999999999999988778877777777888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------ccCCcceEEEEcccCC
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATS 162 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~S~~~ 162 (181)
.+.+.|......+...+......++|+++.+||+|.+.....++.+..+++. ....+...+|-||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 9999999999888887776656789999999999998876655555544311 1222446678899998
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
+.+.-+.|.|+.+.+
T Consensus 178 ~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQYI 192 (193)
T ss_pred cCccceeeeehhhhc
Confidence 888888888877654
No 215
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.81 E-value=1e-19 Score=119.67 Aligned_cols=161 Identities=16% Similarity=0.256 Sum_probs=123.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--E--EEECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
-.+||.++|++..|||||+-.+.++++. +...+.++++. . +...+..+.+||.+|++++....+....++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 4679999999999999999999999986 44557776653 2 33445789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+||+++++.+..+.+|+.+..+... ...-++|+||-|..-.. +.++--.......++-.+.+.|.||+.+..|+..
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~Nk--tAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNK--TAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCC--ccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 9999999999999999887665432 33447889999974322 2222222222233334566788999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
+|..+..++-
T Consensus 177 IFK~vlAklF 186 (205)
T KOG1673|consen 177 IFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHh
Confidence 9998877654
No 216
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.81 E-value=1.5e-18 Score=128.06 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=80.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc--c----------------cc-------cCcccceEEEEEECCEEEEEEEcCCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI--V----------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~--~----------------~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
..+|+++|++|+|||||+++++...- . +. ..+.......++++++++++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 35799999999999999999974210 0 00 01222334567888999999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+|......+++.+|++++|+|+.+... .....+| +.... .++|+++++||+|+..
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~-~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLF-EVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHH-HHHHh---cCCCEEEEEECCccCC
Confidence 9988777777899999999999976432 2222333 33332 4789999999999753
No 217
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=9.5e-19 Score=120.46 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=94.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCcccc--eEEEEEECCEEEEEEEcCCCCC----------cccccccccc--
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 83 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~~~-- 83 (181)
.|+++|++|+|||||++.+.+..+. ...++.+. ....+... ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999965443 22333222 22223323 3899999999543 2333333333
Q ss_pred -cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEcccC
Q 030193 84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCAT 161 (181)
Q Consensus 84 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~ 161 (181)
+.+++++++|....... ....+.+.+.. .+.|+++++||+|+.................. .....+++++|++
T Consensus 80 ~~~~~~~~v~d~~~~~~~--~~~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTE--IDLEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCH--hHHHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 46789999999754321 11122233332 35899999999998654332222222110000 1223468899999
Q ss_pred CCCCHHHHHHHHHHHh
Q 030193 162 SGEGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l 177 (181)
++.|+++++++|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
No 218
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.79 E-value=2.5e-18 Score=127.09 Aligned_cols=109 Identities=18% Similarity=0.146 Sum_probs=80.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--c------------ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE--I------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~--~------------~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++... . .+. .-|.......+.+++.++.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996411 0 001 11444455677888999999999999988888
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..+++.+|++++|+|+.+... ......|.. ... .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~-~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVE-PQTETVWRQ-ADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCC-HHHHHHHHH-HHH---cCCCEEEEEECCCCCC
Confidence 8889999999999999975422 122233333 332 4689999999999863
No 219
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=1.3e-18 Score=135.22 Aligned_cols=159 Identities=19% Similarity=0.164 Sum_probs=105.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc------------cc-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|+.++|||||+++|++... .+ ..-|.+.....+..++..+.++|+|||++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 5678999999999999999999986311 00 0113333334455567889999999999888
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAA-----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~-----~~~~~~~~~~~~ 149 (181)
.........+|++++|+|+.+... ....+.+. .+.. .++| +++++||+|+.+..+.. ++...+....+.
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~-~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHIL-LARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHH-HHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 777777788999999999975321 12223332 2322 3567 68899999987533221 222222222222
Q ss_pred CcceEEEEcccCCCC--------CHHHHHHHHHHHhh
Q 030193 150 QRHWYIQSTCATSGE--------GLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~--------~i~~~~~~i~~~l~ 178 (181)
...++++++|+++|. ++.++++.+.+.+.
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 334689999999983 57888888877653
No 220
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=3.5e-18 Score=125.58 Aligned_cols=161 Identities=20% Similarity=0.176 Sum_probs=114.4
Q ss_pred HHhhhc--cccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCEEEEEEEcCCC------CCcccc
Q 030193 9 FSKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQ------DKIRPL 77 (181)
Q Consensus 9 ~~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~------~~~~~~ 77 (181)
+.++|. .+.+.|+|.|.||||||||++++++..+. . ...|.++.+..++.+..++|++||||- ++..-.
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHH
Confidence 444444 37889999999999999999999998864 2 344888999999999999999999993 111111
Q ss_pred c---ccccccccEEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcc
Q 030193 78 W---RHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (181)
Q Consensus 78 ~---~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
. .+.-.-.++++|+||++..+.+ +.....|.++... .+.|+++|+||+|..+....+++..........
T Consensus 238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~--- 311 (346)
T COG1084 238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGE--- 311 (346)
T ss_pred HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhccc---
Confidence 1 1112347899999999977655 4444555555444 358999999999999877777666554333221
Q ss_pred eEEEEcccCCCCCHHHHHHHHHHH
Q 030193 153 WYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 153 ~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
....+++..+.+++.+-+.+...
T Consensus 312 -~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 312 -EPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred -cccceeeeehhhHHHHHHHHHHH
Confidence 13357788888888777776654
No 221
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=2.6e-18 Score=123.32 Aligned_cols=156 Identities=17% Similarity=0.101 Sum_probs=99.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc------------cC----------cccceEEEEE-----ECCEEEEEEEcCCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTT------------IP----------TIGFNVETVE-----YKNISFTVWDVGGQ 71 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~------------~~----------t~~~~~~~~~-----~~~~~~~~~d~~g~ 71 (181)
+|+++|+.|+|||||+++|+....... .. +.......+. ...+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986442211 00 1111112222 23478999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-------CCHh---HHHh
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-------MNAA---EITD 141 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-------~~~~---~~~~ 141 (181)
.+|......++..+|++++|+|+.+..++.. ..++..... .+.|+++|+||+|+... ...+ ++.+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888899999999999987655432 233332222 35899999999998621 1111 1111
Q ss_pred ----hhCCCcc------CCcceEEEEcccCCCCCHH--------HHHHHHHHHhhh
Q 030193 142 ----KLGLHSL------RQRHWYIQSTCATSGEGLY--------EGLDWLSNNIAT 179 (181)
Q Consensus 142 ----~~~~~~~------~~~~~~~~~~S~~~~~~i~--------~~~~~i~~~l~~ 179 (181)
......+ -+.+..++++|++.++++. ++++.|.+.+.+
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCC
Confidence 1111111 1122347789999998887 777777766543
No 222
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.78 E-value=9.1e-18 Score=134.10 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=82.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c----------------ccccC-------cccceEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I----------------VTTIP-------TIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~----------------~~~~~-------t~~~~~~~~~~~~~~~~~~d~~ 69 (181)
.+..+|+++|++++|||||+++|+... . .+..+ +.......+.++++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 567899999999999999999996311 0 00011 1223345577889999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
|+.+|......+++.+|++++|+|+.+... ......|. .... .++|+++++||+|...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLME-VCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECCcccc
Confidence 999998877778899999999999976432 22333443 3332 4799999999999864
No 223
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.9e-18 Score=117.26 Aligned_cols=156 Identities=22% Similarity=0.344 Sum_probs=130.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEE---C-CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY---K-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~---~-~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++++++|+.|.||++++++++.++|. .+.+|.+........ . ..++..|||+|++.+-....-|+-+....+++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 789999999999999999999999998 578899887755432 3 38999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
||+...-.+.+...|..+..+.. .++||++++||.|..+.. .........+..++.+++.|++++.|++.=|-
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccchH
Confidence 99998888899988888877643 369999999999975432 12223444456678899999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
|+.+++..
T Consensus 163 ~LarKl~G 170 (216)
T KOG0096|consen 163 WLARKLTG 170 (216)
T ss_pred HHhhhhcC
Confidence 99987653
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=2.2e-18 Score=134.00 Aligned_cols=158 Identities=20% Similarity=0.162 Sum_probs=103.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC-------Cc-----ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG-------EI-----VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~-------~~-----~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|++++|||||+++|++. .+ .+. .-|.+.....+..++..+.++||||+.+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 45789999999999999999999862 11 000 113333334455567789999999999887
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCCH-h----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNA-A----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+... ....+.+.. +.. .++|.+ +++||+|+.+..+. + ++...+..-.+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~-~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHH-HHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 777777788999999999975321 222233332 222 357755 68999999753221 1 222222111112
Q ss_pred CcceEEEEcccCCCC----------CHHHHHHHHHHHh
Q 030193 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~----------~i~~~~~~i~~~l 177 (181)
..+++++++|+.+|. ++.++++.|.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 235789999999984 6788888887654
No 225
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=8.5e-18 Score=124.63 Aligned_cols=109 Identities=21% Similarity=0.223 Sum_probs=80.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--------------c-------ccCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV--------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++...-. + ...+.......+.+.++.+++|||||+.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999753210 0 011333444567778899999999999888888
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..+++.+|++++|+|+.+..... ....|.. +.. .++|.++++||+|...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~-~~~---~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVG-TEKLWEF-ADE---AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHH-HHH---cCCCEEEEEECCccCC
Confidence 888889999999999998654332 2233332 222 4689999999999864
No 226
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.78 E-value=1e-17 Score=110.03 Aligned_cols=161 Identities=22% Similarity=0.316 Sum_probs=116.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc---cccCcccceE-EEEEE---CCEEEEEEEcCCCCCc-cccccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNV-ETVEY---KNISFTVWDVGGQDKI-RPLWRHYFQNTQ 86 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~-~~~~~---~~~~~~~~d~~g~~~~-~~~~~~~~~~~d 86 (181)
-+..||+++|.-++|||+++..++..+.. ...||++-.+ ..++- ....++++||.|-..+ ..+-.+|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 35679999999999999999999876643 2345554222 23322 2357999999997777 455568889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++++||+..+++||+.+...-..+-+......+||++++||+|..++.+... ......++...+..+++++.++..+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~---d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM---DVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH---HHHHHHHhhhheeEEEEEeccchhh
Confidence 9999999999999988875444443344446799999999999875433221 1111222233456889999999999
Q ss_pred HHHHHHHHHHhh
Q 030193 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~l~ 178 (181)
-+-|-.+...+.
T Consensus 164 ~epf~~l~~rl~ 175 (198)
T KOG3883|consen 164 YEPFTYLASRLH 175 (198)
T ss_pred hhHHHHHHHhcc
Confidence 999998887664
No 227
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=5e-19 Score=137.99 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=122.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE---EEEEECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+.++|+++|+.|+||||||-+++..++++..|..-..+ ..+.-..+..++.|++..+.-+.....-++.+|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 3678999999999999999999999999987666332111 1122244568999999777666665666799999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCH--hH-HHhhhC-CCccCCcceEEEEcccCCCC
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNA--AE-ITDKLG-LHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~--~~-~~~~~~-~~~~~~~~~~~~~~S~~~~~ 164 (181)
|++.+++.++..+...|...+++..+ .++|+|+|+||+|..+.... +. ....+. ...++ .+++|||++-.
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE----tciecSA~~~~ 161 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE----TCIECSALTLA 161 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH----HHHhhhhhhhh
Confidence 99999999999999999999887553 47999999999999875443 22 111111 11112 58899999999
Q ss_pred CHHHHHHHHHHHhh
Q 030193 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~i~~~~~~i~~~l~ 178 (181)
++.++|....+++.
T Consensus 162 n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 162 NVSELFYYAQKAVI 175 (625)
T ss_pred hhHhhhhhhhheee
Confidence 99999988777654
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=2.7e-18 Score=121.84 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=97.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccc-----eEEEEEEC-CEEEEEEEcCCCCCcccccc-----ccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-----NVETVEYK-NISFTVWDVGGQDKIRPLWR-----HYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~-----~~~~~~~~-~~~~~~~d~~g~~~~~~~~~-----~~~~~ 84 (181)
+++|+++|++|+|||||+|++++..... ..++.+. ....+... ...+.+||+||......... ..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999865432 2222221 11112111 24789999999754322222 22567
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhC---CCccC---
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLG---LHSLR--- 149 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~---~~~~~--- 149 (181)
+|+++++.+. ++...+..+.+.+.. .+.|+++|+||+|+..... .+++...+. ...+.
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998887432 356666666666665 3689999999999843211 112111111 11111
Q ss_pred CcceEEEEcccC--CCCCHHHHHHHHHHHhhh
Q 030193 150 QRHWYIQSTCAT--SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 150 ~~~~~~~~~S~~--~~~~i~~~~~~i~~~l~~ 179 (181)
....++|.+|+. .+.++..+.+.+...|.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 112368889998 679999999999988764
No 229
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7e-18 Score=134.45 Aligned_cols=150 Identities=21% Similarity=0.284 Sum_probs=111.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCC------ccccccccc--cc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDK------IRPLWRHYF--QN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~------~~~~~~~~~--~~ 84 (181)
+..+|+++|.||+|||||.|++++.... .+-| |.+.....+..++.++++.|+||.-. -+.....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 3567999999999999999999987743 5555 67777788888999999999999422 122233333 35
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.|+++-|+|+++.++-- ....+.+. .+.|++++.|++|...+ ...+++.+.++. |++++||
T Consensus 82 ~D~ivnVvDAtnLeRnL---yltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNL---YLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHH---HHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEe
Confidence 79999999998754322 22223333 47899999999998654 345566666654 6999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
++|.|++++.+.+.+...++
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 147 KRGEGLEELKRAIIELAESK 166 (653)
T ss_pred ecCCCHHHHHHHHHHhcccc
Confidence 99999999999998765544
No 230
>PRK13351 elongation factor G; Reviewed
Probab=99.77 E-value=1.5e-17 Score=137.62 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=88.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC-------------c-cc-------ccCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------------I-VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~-------------~-~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
++..+|+++|+.|+|||||+++|+... + .+ ...|.......+.+.+..+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 567899999999999999999997521 0 00 12245555667888899999999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|...+..+++.+|++++|+|+.+....+.. ..|... .. .++|+++|+||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~-~~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQA-DR---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHH-Hh---cCCCEEEEEECCCCCCC
Confidence 998899999999999999999876554432 334332 22 47899999999998753
No 231
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=7e-18 Score=116.83 Aligned_cols=162 Identities=25% Similarity=0.398 Sum_probs=121.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccc---cccEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---NTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~---~~d~~i~v 91 (181)
...-.|+++|+.+||||+|.-.|..+.+....+++..+...+.......+++|.|||++.+.....++. .+-+++||
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 445689999999999999999999998777777777888888888888999999999998877666666 78999999
Q ss_pred EECCC-cccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC------------------------
Q 030193 92 VDSND-RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG------------------------ 144 (181)
Q Consensus 92 ~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~------------------------ 144 (181)
+|... +.....+.+.+..++... ....+|+++..||.|+..+...+.+++.+.
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~ 195 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD 195 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 99864 233445555565555543 346789999999999976543333322111
Q ss_pred -----------CCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 145 -----------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 145 -----------~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
...+..+.+.+.++|++++ +++++-+|+.+++
T Consensus 196 ~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 196 FTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 1122235678999999998 8999999998764
No 232
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.77 E-value=6.3e-20 Score=124.10 Aligned_cols=161 Identities=17% Similarity=0.248 Sum_probs=126.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE----EEEEC-CEEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~----~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
..-++++|+|+-|+||||++.+++.+.+.. +..|++..+. +.+.+ -+++++||.+|+++|-.+...|++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 456799999999999999999999998873 5667765542 22222 26889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCC---CCeEEEEEeCCCCCCCC---CHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.+|||+++...|+....|..+......++ -+|+++..||||..+.. ....+........+. ..+++|++.
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~----gwtets~Ke 178 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE----GWTETSAKE 178 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc----ceeeecccc
Confidence 99999999999999999988876654443 47899999999975432 123333333333332 478999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
+.|++|+.+.+++++..
T Consensus 179 nkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKILV 195 (229)
T ss_pred ccChhHHHHHHHHHHHh
Confidence 99999999999987653
No 233
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=4.8e-18 Score=132.18 Aligned_cols=145 Identities=19% Similarity=0.142 Sum_probs=94.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC------------ccc-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|+.++|||||+++|++.. ..+ ..-|.+.....++.++..+.+||||||++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 567899999999999999999997431 001 1124444444555567889999999999988
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (181)
.........+|++++|+|+.+... ....+.+.. +.. .++| +++++||+|+.+..+. + ++...+....+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~-~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPM-PQTREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHH-HHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 776666678999999999975321 122223332 222 2556 4578999998754321 1 222222222222
Q ss_pred CcceEEEEcccCCCC
Q 030193 150 QRHWYIQSTCATSGE 164 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~ 164 (181)
...++++++|+.++.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 234789999999875
No 234
>CHL00071 tufA elongation factor Tu
Probab=99.77 E-value=3.8e-18 Score=133.23 Aligned_cols=146 Identities=19% Similarity=0.161 Sum_probs=97.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc------------c-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|++++|||||+++|++..-. + ..-|.+.....+..++.++.++|+|||.+|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 55789999999999999999999864210 0 0113333334455677889999999999887
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+..... ....+.+ ..+.. .++| +++++||+|+.+..+. + ++...+....+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~-~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHI-LLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHH-HHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 777777789999999999974321 2222333 33332 3567 7899999999763321 1 223322222222
Q ss_pred CcceEEEEcccCCCCC
Q 030193 150 QRHWYIQSTCATSGEG 165 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~ 165 (181)
...++++++|+.+|.|
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 165 GDDIPIVSGSALLALE 180 (409)
T ss_pred CCcceEEEcchhhccc
Confidence 2347899999999874
No 235
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.4e-17 Score=129.18 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=112.9
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCc-c----------cc-------cCcccceEEEEEECC---EEEEEEEcCCC
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI-V----------TT-------IPTIGFNVETVEYKN---ISFTVWDVGGQ 71 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~----------~~-------~~t~~~~~~~~~~~~---~~~~~~d~~g~ 71 (181)
|.++-.|+.|+.+..+|||||..+|+...- . +. .-|.....+.+-+++ +.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 336677999999999999999999975321 0 00 002222334444444 99999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCc
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (181)
.+|.....+.+..|+++|+|+|++.--.-+.....+..+- .+..+|.|+||+|++.+. .+++...... .|...
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad-pe~V~~q~~~-lF~~~ 208 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD-PERVENQLFE-LFDIP 208 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC-HHHHHHHHHH-HhcCC
Confidence 9999999999999999999999985332233333444432 478999999999998653 3333332221 11122
Q ss_pred ceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 152 HWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
.-+++.+||++|.|+++++++|++.+...
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 22678899999999999999999987643
No 236
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.8e-17 Score=128.83 Aligned_cols=155 Identities=22% Similarity=0.218 Sum_probs=113.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC---cccceEEEEEEC---CEEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.+.+=|.++|+..+|||||+..+.+.......+ |-.+.-+.+... .-.+.++|||||+.|..++.+..+-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 356778999999999999999998877654322 444444555543 36899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC----CcceEEEEcccCCCC
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----QRHWYIQSTCATSGE 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~ 164 (181)
++|+++++- +......-.+..+. .++|+++.+||+|..+. ....+...+....+. .....++++||++|+
T Consensus 83 ILVVa~dDG--v~pQTiEAI~hak~---a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 83 ILVVAADDG--VMPQTIEAINHAKA---AGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEccCC--cchhHHHHHHHHHH---CCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999752 22222222223333 58999999999999843 444444444433332 235789999999999
Q ss_pred CHHHHHHHHHH
Q 030193 165 GLYEGLDWLSN 175 (181)
Q Consensus 165 ~i~~~~~~i~~ 175 (181)
|+++|++.+.-
T Consensus 157 Gi~eLL~~ill 167 (509)
T COG0532 157 GIDELLELILL 167 (509)
T ss_pred CHHHHHHHHHH
Confidence 99999998764
No 237
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.76 E-value=9.1e-18 Score=122.70 Aligned_cols=154 Identities=29% Similarity=0.385 Sum_probs=105.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCcccceEEEEEECCE-EEEEEEcCCCCCc----ccc---ccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKNI-SFTVWDVGGQDKI----RPL---WRHYFQN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~----~~~---~~~~~~~ 84 (181)
....|+++|-||+|||||++++.+...- . ...|.......+.+++. .+++-|.||--.- +-+ .-..+..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 3457899999999999999999887632 1 12233333334555554 4999999993211 111 2233467
Q ss_pred ccEEEEEEECCCc---ccHHHHHHHHHHH-hcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCccCCcceEEEEc
Q 030193 85 TQGLIFVVDSNDR---DRVVEARDELHRM-LNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 85 ~d~~i~v~d~~~~---~s~~~~~~~~~~~-~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
|+.++||+|++.+ ..++.....+.+. ..+..+.+.|.++|+||+|+.+.+.. +++.+.+... .++++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pv 347 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPV 347 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEe
Confidence 9999999999987 6666665544433 23444567899999999998643322 4455544332 58999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030193 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~ 176 (181)
||++++|+.++++.+.+.
T Consensus 348 sA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeccccchHHHHHHHhhc
Confidence 999999999999988764
No 238
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.75 E-value=5.8e-17 Score=133.97 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=84.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c------c------cc-------cCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I------V------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~------~------~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
++..+|+|+|++++|||||+++|+... . . +. .-|.......+.+++..+++|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 566799999999999999999996421 0 0 00 1134455567788999999999999998
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+...+..+++.+|++++|+|+.+....+ ....|. .+.. .++|+++++||+|+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~-~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQ-SETVWR-QANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChh-HHHHHH-HHHH---cCCCEEEEEECCCCCC
Confidence 8888888899999999999997643332 223333 2332 4689999999999875
No 239
>PRK00049 elongation factor Tu; Reviewed
Probab=99.75 E-value=1.2e-17 Score=129.95 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=104.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc------------c-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|+.++|||||+++|++.... + ..-|.+.....+..++..+.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 56789999999999999999999863110 0 0113334444455567889999999998887
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+... ....+.+ ..+.. .++|.+ +++||+|+.+... .+ ++...+....+.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~-~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHI-LLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHH-HHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777789999999999975321 2222333 33332 357865 6899999975322 11 233333222222
Q ss_pred CcceEEEEcccCCCC----------CHHHHHHHHHHHh
Q 030193 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~----------~i~~~~~~i~~~l 177 (181)
..+++++++|+.++. ++..+++.|...+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 345789999999875 4677777777644
No 240
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.75 E-value=1.2e-17 Score=131.26 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=102.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc---------------------------ccc-------cCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI---------------------------VTT-------IPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------------------~~~-------~~t~~~~~~~~~~~~ 60 (181)
...++|+++|+.++|||||+.+|+...- .+. .-|.+.....++.++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4468999999999999999999863110 010 114444455566778
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHH-------HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~ 132 (181)
..++++|+|||++|.......+..+|++|+|+|+.+ ..|+ ...+.+.. ... .++ ++++++||+|+.+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~-~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALL-AFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHH-HHH---cCCCcEEEEEEcccCCc
Confidence 999999999999999999888999999999999975 2232 33333332 222 356 5789999999762
Q ss_pred C----CC----HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 133 A----MN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 133 ~----~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
. .. .+++...+....+....++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 11 233333333333334457899999999999853
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.74 E-value=1.3e-17 Score=132.03 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=98.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCc--cc---------------------------c-------cCcccceEEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--VT---------------------------T-------IPTIGFNVETVE 57 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~-------~~t~~~~~~~~~ 57 (181)
.+..++|+++|++++|||||+++|+...- .. . .-|.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46789999999999999999999974321 00 0 013334445566
Q ss_pred ECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-
Q 030193 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN- 135 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~- 135 (181)
.++..+.++|||||++|.......+..+|++++|+|+.....- +.....+...+. ..|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEEEEeeccccchhH
Confidence 6788999999999998876666667899999999999643111 111111222221 257899999999974321
Q ss_pred -HhHHHhhhCC--CccC-CcceEEEEcccCCCCCHHHH
Q 030193 136 -AAEITDKLGL--HSLR-QRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 136 -~~~~~~~~~~--~~~~-~~~~~~~~~S~~~~~~i~~~ 169 (181)
.+++...+.. .... ....+++++|+++|.|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2233322210 0111 12468999999999998764
No 242
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.74 E-value=8e-17 Score=128.75 Aligned_cols=112 Identities=22% Similarity=0.274 Sum_probs=81.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--Ccc----------------cccC-------cccceEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV----------------TTIP-------TIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~----------------~~~~-------t~~~~~~~~~~~~~~~~~~d~~ 69 (181)
.+..+|+++|++++|||||+++++.. ... +..+ +.......+++.++.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 56889999999999999999998531 110 0000 1222335577889999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|+.+|......+++.+|++++|+|+.+. ++...+.+.+.... .++|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 9998888777788999999999999753 22222223333333 478999999999985
No 243
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.74 E-value=4.2e-18 Score=117.58 Aligned_cols=125 Identities=29% Similarity=0.477 Sum_probs=78.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEE---CCEEEEEEEcCCCCCccccccc---ccccccEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRH---YFQNTQGLI 89 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~~~~~---~~~~~d~~i 89 (181)
++..|+++|++|+|||+|..+|..+........+..+. .+.. .+..+.++|+|||++.+..... +..++.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 35679999999999999999999997654444443333 2222 3467999999999998875544 377899999
Q ss_pred EEEECCC-cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHh
Q 030193 90 FVVDSND-RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITD 141 (181)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~ 141 (181)
||+|.+. +..+..+.+.+..++.... ...+|+++++||.|+........++.
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~ 135 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKK 135 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHH
Confidence 9999974 4455666666655544211 25799999999999987554444433
No 244
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=9.3e-18 Score=120.65 Aligned_cols=158 Identities=24% Similarity=0.311 Sum_probs=100.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc----ccCcccceEEEEEE-CCEEEEEEEcCCCCCccc-----ccccccccccEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----LWRHYFQNTQGL 88 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~-----~~~~~~~~~d~~ 88 (181)
||+++|+.+|||||+.+.+.++..+. -.+|.+.....+.. ....+++||.||+..+.. .....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999999876542 24688887777764 567999999999875543 457778999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCccCCc---ceEEEEccc
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQR---HWYIQSTCA 160 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~S~ 160 (181)
|||+|+.+.+ +......+...+.. ...++..+-++++|+|+..+...+++.+... .....+. .+.++.||.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999997433 33443333333221 1226899999999999976432222211111 0111111 478999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
.+ ..+-+++..+++.|.
T Consensus 160 ~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp TS-THHHHHHHHHHHTTS
T ss_pred cC-cHHHHHHHHHHHHHc
Confidence 99 589999999998764
No 245
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=2.6e-17 Score=119.80 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=105.3
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccc---cCcccce-EEEEEECCEEEEEEEcCCCC------Cc------ccc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFN-VETVEYKNISFTVWDVGGQD------KI------RPL 77 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~t~~~~-~~~~~~~~~~~~~~d~~g~~------~~------~~~ 77 (181)
..+...|+|+|.||+|||||.|.+++...... ..|+.-. ...+.-+..++.++||||-- ++ ...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 35678999999999999999999999986532 3344333 33455677999999999921 11 111
Q ss_pred cccccccccEEEEEEECCCccc--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---------------C--HhH
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------------N--AAE 138 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---------------~--~~~ 138 (181)
.......+|.++.++|+++... ...+...+.++. .+|-++|.||.|..... . ..+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys------~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS------KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh------cCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 2234478999999999985321 122333344432 58889999999986421 1 223
Q ss_pred HHhhhCCCc-cC----Ccce----EEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 139 ITDKLGLHS-LR----QRHW----YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~-~~----~~~~----~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
++..+.... .+ ..+| .+|.+||.+|+|++++-++|.....
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 333333221 11 1234 3899999999999999999987643
No 246
>COG2262 HflX GTPases [General function prediction only]
Probab=99.74 E-value=9.7e-17 Score=121.30 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=112.6
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc---cccCcccceEEEEEEC-CEEEEEEEcCCC---------CCccccccc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQ---------DKIRPLWRH 80 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~---------~~~~~~~~~ 80 (181)
...-+.|+++|-.|+|||||.|++++.... ....|.+....++.+. +..+.+-||.|- +.|++....
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 356678999999999999999999987654 2345777777777777 589999999993 234554444
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
. ..+|+++.|+|+++|.-.+.+ +...+.+.+.....+|+++|.||+|+..... ...+.... . ..+.+|
T Consensus 269 ~-~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~--------~-~~v~iS 337 (411)
T COG2262 269 V-KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS--------P-NPVFIS 337 (411)
T ss_pred h-hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC--------C-CeEEEE
Confidence 4 579999999999998543333 3344555554446799999999999875543 22222111 1 356799
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
|++|+|++.+.+.|.+.+.
T Consensus 338 A~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 338 AKTGEGLDLLRERIIELLS 356 (411)
T ss_pred eccCcCHHHHHHHHHHHhh
Confidence 9999999999999998775
No 247
>PLN03126 Elongation factor Tu; Provisional
Probab=99.74 E-value=2.1e-17 Score=130.52 Aligned_cols=146 Identities=21% Similarity=0.169 Sum_probs=98.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc------------ccc-------cCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|++++|||||+++|++..- .+. .-|.+.....++.++..+.++|+|||.+|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 4578999999999999999999985210 000 113333444566678899999999999998
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+... ....+++.. +.. .++| +++++||+|+.+..+ .+ ++...+..-.+.
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~-~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILL-AKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHH-HHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 877777788999999999975321 222333333 332 3567 789999999976322 12 222222222233
Q ss_pred CcceEEEEcccCCCCC
Q 030193 150 QRHWYIQSTCATSGEG 165 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~ 165 (181)
..+++++++|+.++.+
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 3468899999988753
No 248
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.74 E-value=2e-17 Score=129.93 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=104.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccccc------CcccceEEEE-----------------EE-------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI------PTIGFNVETV-----------------EY------------- 58 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------~t~~~~~~~~-----------------~~------------- 58 (181)
+-.++|+++|+.++|||||+.+|++....... -|.+..+... ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 56789999999999999999999975432111 1222111110 00
Q ss_pred ---CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030193 59 ---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 59 ---~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
....+.++|+|||++|..........+|++++|+|+.+........+.+. .+... .-.++++|+||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHHH
Confidence 02478999999999998877777789999999999986311122223332 22211 1247899999999986433
Q ss_pred HhH----HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 136 AAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 136 ~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.++ +...+.. .....++++++||++|.|+++|++.|.+.+.
T Consensus 189 ~~~~~~ei~~~l~~--~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 AQDQYEEIRNFVKG--TIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHh--hccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 222 2222111 1123568999999999999999999987554
No 249
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.74 E-value=1.7e-17 Score=129.37 Aligned_cols=147 Identities=17% Similarity=0.113 Sum_probs=94.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-----------------------------cc-------cCcccceEEEEEECCE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-----------------------------TT-------IPTIGFNVETVEYKNI 61 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~-------~~t~~~~~~~~~~~~~ 61 (181)
++|+++|+.++|||||+++|+...-. +. .-|.+.....+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 47999999999999999999642200 00 0134444555667788
Q ss_pred EEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 030193 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEI 139 (181)
Q Consensus 62 ~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~ 139 (181)
++.++|||||++|.......+..+|++++|+|+..... ....+.+. +.... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999987766677789999999999964321 11112121 12211 1346899999999875321 1222
Q ss_pred HhhhC--CCccCCcceEEEEcccCCCCCHHH
Q 030193 140 TDKLG--LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 140 ~~~~~--~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
...+. .......+++++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22221 001111246799999999999885
No 250
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=135.96 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=102.4
Q ss_pred HHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcc-c-------------c----------------------cCc
Q 030193 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-T-------------T----------------------IPT 48 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~-------------~----------------------~~t 48 (181)
+.+.+.+......++|+++|++++|||||+++|+...-. . . .-|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 445566666677899999999999999999999853210 0 0 013
Q ss_pred ccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030193 49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
.+..+..+..++.++.++||||++.|.......+..+|++++|+|+..... ....+.+ .++... ...++++++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~-~~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHS-FIASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHH-HHHHHh--CCCeEEEEEEec
Confidence 333444566678899999999998887666666789999999999964321 1111111 112211 136899999999
Q ss_pred CCCCCC--CHhHHHhhhC--CCccCCcceEEEEcccCCCCCHHH
Q 030193 129 DLPNAM--NAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 129 D~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+.+.. ..+++...+. ...+.-.+++++++||++|.|+++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 997421 1222322221 001111235789999999999874
No 251
>PLN03127 Elongation factor Tu; Provisional
Probab=99.73 E-value=4.9e-17 Score=127.81 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=103.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------Cc------cc-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~------~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|+.++|||||+++|.+. .. .+ ..-|.+.....++.++.++.++||||+..|.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 56789999999999999999999632 10 01 1114455555566677899999999999887
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHH----hhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEIT----DKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~~~~----~~~~~~~~~ 149 (181)
.........+|++++|+|+.+.. ..........+.. .++| +++++||+|+.+... .+.+. ..+....+.
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 77666667899999999986432 2222222233332 3677 578999999975322 11122 222111222
Q ss_pred CcceEEEEcccC---CCCC-------HHHHHHHHHHHhh
Q 030193 150 QRHWYIQSTCAT---SGEG-------LYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~S~~---~~~~-------i~~~~~~i~~~l~ 178 (181)
...++++++|+. ++.| +.++++.+.+.+.
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 335788888875 4555 7788888877653
No 252
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.73 E-value=3.9e-17 Score=128.46 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=102.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c-------------------------ccc-------cCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------VTT-------IPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~-------------------------~~~-------~~t~~~~~~~~~~~~ 60 (181)
...++|+++|+.++|||||+.+|+... . .+. ..|.+.....++.++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 456899999999999999999997521 0 011 114445555677788
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCC-
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPN- 132 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~- 132 (181)
..++|+|+|||.+|.......+..+|++++|+|+.... .+ ....+.|... .. .++| +++++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEccccccc
Confidence 99999999999999888888889999999999997531 11 1233333322 22 3555 789999999432
Q ss_pred ---CCC----HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 133 ---AMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 133 ---~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+.. .+++...+....+...+++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 122 233333333333444568999999999999864
No 253
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=4.7e-16 Score=114.25 Aligned_cols=153 Identities=22% Similarity=0.219 Sum_probs=104.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cc-cCcccceEEEEEECCEEEEEEEcCCC----CCcc---cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQ----DKIR---PLWRHYFQNT 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~d~~g~----~~~~---~~~~~~~~~~ 85 (181)
-...++++|.|++|||||+++|++.+.. ++ ..|....-.-+++++.++|++|+||- ...+ ...-...++|
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 4568999999999999999999987743 21 22333333457889999999999982 1111 2344566999
Q ss_pred cEEEEEEECCCccc-HHHHHHHHHHH----------------------------------------hcCCCC--------
Q 030193 86 QGLIFVVDSNDRDR-VVEARDELHRM----------------------------------------LNEDEL-------- 116 (181)
Q Consensus 86 d~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~~-------- 116 (181)
|++++|+|+..... .+.+.+.+.+. +.++..
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999985543 32333222221 111000
Q ss_pred ----------------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 117 ----------------RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 117 ----------------~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.=+|.+.|.||+|+...++.+.+.+.. .++.+||+.++|++++.+.|.+.+.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 124789999999998754444444433 4678999999999999999998763
No 254
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=1.1e-16 Score=122.59 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=113.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-----------ccc-------CcccceEEEEEE-----CCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-----------TTI-------PTIGFNVETVEY-----KNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------~~~-------~t~~~~~~~~~~-----~~~~~~~~d~~g~ 71 (181)
++..|..|+.+-.+|||||..|++...-. +.. -|+.....++.+ +.+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 45667889999999999999999753210 110 022222222222 4589999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcc
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~ 148 (181)
-+|.-...+.+..|.+.++|+|++.--.-+.+...+..+- .+.-++.|+||+|++... ..+++...+++...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999985433344455555543 478899999999998653 23455555555432
Q ss_pred CCcceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
..+.+|||+|.|++++++.|++.+...
T Consensus 162 -----dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 162 -----DAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred -----hheeEecccCCCHHHHHHHHHhhCCCC
Confidence 356799999999999999999988653
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=2.8e-16 Score=102.27 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=71.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--cc--cCcccceEEEEEECCEEEEEEEcCCCCCc---------ccccccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQNT 85 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~---------~~~~~~~~~~~ 85 (181)
+|+++|.+|+|||||+|+|++.... +. ..|.......+...+..+.++||||-..- .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986432 22 22444545566778899999999995321 11122233789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
|++++|+|+.++. ......+.+.++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~--~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPI--TEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHS--HHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCCC--CHHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999987632 233333434343 47999999998
No 256
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=1.9e-16 Score=113.84 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=77.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc--c----------ccc-------CcccceEEEEEEC----------CEEEEEEEcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI--V----------TTI-------PTIGFNVETVEYK----------NISFTVWDVG 69 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~--~----------~~~-------~t~~~~~~~~~~~----------~~~~~~~d~~ 69 (181)
+|+++|+.++|||||+.+|+...- . +.. -|.......+.+. ++.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975321 0 000 1222222222232 7889999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|+.+|......+++.+|++++|+|+.+....+. ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999986544332 333333322 368999999999975
No 257
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=1.5e-16 Score=112.86 Aligned_cols=160 Identities=14% Similarity=0.082 Sum_probs=99.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-c----cCcccceEEEEEECCEEEEEEEcCCCCCccc-----------ccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWRHY 81 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~~ 81 (181)
++|+++|.+|+||||++|++++..... . ..|...........+..+.++||||-..... .+...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999987542 1 2366666667777889999999999543321 11222
Q ss_pred cccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCccCCcceEEEE
Q 030193 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQRHWYIQS 157 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (181)
..+.|++++|+++.+.. ......+.+.+.+... .-.++++++|+.|.......++...... ....+.++-.++.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 35789999999987521 1122223333333211 1258999999999776544333322111 1111222212222
Q ss_pred c-----ccCCCCCHHHHHHHHHHHhhh
Q 030193 158 T-----CATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~-----S~~~~~~i~~~~~~i~~~l~~ 179 (181)
. |+..+.++++|++.+.+.+..
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 2 256678899999999887764
No 258
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.5e-16 Score=120.30 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=106.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcc---------cccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~ 81 (181)
+..++|+++|+||+|||||+|.|.+.+.. +..| |.+.-...++..++.+.+.||+|-..-. ......
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 67899999999999999999999999865 3333 6677778889999999999999943310 112233
Q ss_pred cccccEEEEEEECCC--cccHHHHHHHHHHHhc-----CCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcce
Q 030193 82 FQNTQGLIFVVDSND--RDRVVEARDELHRMLN-----EDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~-----~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (181)
++.+|++++|+|+.. -++-..+.+.+...-. -.+..+.|++++.||+|+..... ....-..+......+..-
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 467999999999932 2221222222222111 01123478999999999976521 111000111111111122
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
...++|+++++|++++...+.+.+..
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHH
Confidence 45569999999999999999887653
No 259
>PRK12739 elongation factor G; Reviewed
Probab=99.69 E-value=3.7e-16 Score=129.20 Aligned_cols=114 Identities=21% Similarity=0.142 Sum_probs=85.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC-----c---c------cc-------cCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----I---V------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~-----~---~------~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
++..+|+|+|++++|||||+++|+... . . +. .-|.+.....+.+++..++++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 456789999999999999999996421 0 0 00 1255556677888999999999999988
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|...+...++.+|++++|+|+.+.. +.....+...+.. .++|+++++||+|+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~--~~qt~~i~~~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGV--EPQSETVWRQADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCC--CHHHHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 8888888889999999999997542 2222223333333 46899999999998753
No 260
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=5.5e-16 Score=120.58 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=113.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccccc---CcccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.+=|-|+|+..+|||||+..|.+-...... -|..+.-+.+.. .+-+++|+|||||..|.+++.+...-.|.+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 46777889999999999999999887654221 133333333333 56899999999999999999999899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccC----CcceEEEEcccCCCCCH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----QRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~~i 166 (181)
|+.+.+-- .. .-.+-++..+..++|+|+.+||+|.+. ...+.+.+.+....+. ..+++++++||++|+|+
T Consensus 231 VVAadDGV--mp---QT~EaIkhAk~A~VpiVvAinKiDkp~-a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGV--MP---QTLEAIKHAKSANVPIVVAINKIDKPG-ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCc--cH---hHHHHHHHHHhcCCCEEEEEeccCCCC-CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 99997521 11 111222333336899999999999763 4555555555433332 34688999999999999
Q ss_pred HHHHHHHHHH
Q 030193 167 YEGLDWLSNN 176 (181)
Q Consensus 167 ~~~~~~i~~~ 176 (181)
+.|-+.+.-.
T Consensus 305 ~~L~eaill~ 314 (683)
T KOG1145|consen 305 DLLEEAILLL 314 (683)
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 261
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.68 E-value=2.8e-16 Score=116.64 Aligned_cols=138 Identities=14% Similarity=0.219 Sum_probs=83.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-----------cCcccceEE--EEEECC--EEEEEEEcCCCCCccc-----
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRP----- 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~----- 76 (181)
.++|+++|++|+|||||+|+|++..+... .+|...... .+...+ +++++|||||-.....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999998876422 223333332 233344 6799999999432211
Q ss_pred ---------------------ccccccc--cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 77 ---------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 77 ---------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.+...+. .+|+++|+++.+. ..+...+..+.+.+.. ++|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK----RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc----cCCEEEEEECCCcCCH
Confidence 1112223 4788999999864 2334443334444442 5899999999998764
Q ss_pred CCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 134 MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.+.....+.. ...+...++++|....
T Consensus 159 ~e~~~~k~~i-~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 159 EELKEFKQRI-MEDIEEHNIKIYKFPE 184 (276)
T ss_pred HHHHHHHHHH-HHHHHHcCCceECCCC
Confidence 3333222222 2223334455655544
No 262
>PRK00007 elongation factor G; Reviewed
Probab=99.68 E-value=8.9e-16 Score=126.90 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=82.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--------cc------cc-------cCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------IV------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--------~~------~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
++..+|+++|++++|||||+++|+... .. +. .-|.+.....+.+.+..++++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 567799999999999999999997311 00 00 1144445566788899999999999988
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
|.......++.+|++++|+|+...- +.........+.. .++|+++++||+|+..
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~--~~qt~~~~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGV--EPQSETVWRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCc--chhhHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8777777788999999999986432 2222222233333 4689999999999874
No 263
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=1.2e-15 Score=114.99 Aligned_cols=76 Identities=26% Similarity=0.416 Sum_probs=53.0
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcc-------cccCcccceEEE-------------------EE-ECCEEEEEEEcCCC-
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVET-------------------VE-YKNISFTVWDVGGQ- 71 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~-------~~~~t~~~~~~~-------------------~~-~~~~~~~~~d~~g~- 71 (181)
|+++|.|++|||||+|++++.... +..|+.+..... .+ ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 223333332221 11 13368999999996
Q ss_pred ---CCccccccc---ccccccEEEEEEECC
Q 030193 72 ---DKIRPLWRH---YFQNTQGLIFVVDSN 95 (181)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 95 (181)
++++..... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 344443333 478999999999996
No 264
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=7.1e-16 Score=116.67 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=104.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC------------------------cc---c-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------------------IV---T-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------------------~~---~-------~~~t~~~~~~~~~~~~ 60 (181)
...++++++|+.++||||++-+|+.+. +. + ..-|++.....++.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457899999999999999999996421 00 0 0124555566677788
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc--------cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~--------s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++++|+|+|||.+|-........++|+.++|+|+.+.+ ........+.+.+. -..+|+++||+|.++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD~v~ 159 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMDLVS 159 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEcccccc
Confidence 99999999999999888888889999999999997542 22222233444433 357899999999986
Q ss_pred C--CCHhHHHhhh----CCCccCCcceEEEEcccCCCCCHHH
Q 030193 133 A--MNAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 133 ~--~~~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
- ...+++.... ..-.+..-+++++++|+.+|.|+.+
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2 2233333322 2223333468899999999999864
No 265
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.66 E-value=8.8e-17 Score=123.77 Aligned_cols=168 Identities=16% Similarity=0.181 Sum_probs=117.8
Q ss_pred HHhhhc--cccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCEEEEEEEcCCCCCc----cccc-
Q 030193 9 FSKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKI----RPLW- 78 (181)
Q Consensus 9 ~~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~----~~~~- 78 (181)
+++.+. .....++++|.|++|||||+|.+...... . ...|..+....++++-.++++.||||-.+. ++..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH
Confidence 344442 57789999999999999999999887754 2 244666667778888889999999993211 1111
Q ss_pred ----ccccccccEEEEEEECCCcccHHHHHH--HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcc
Q 030193 79 ----RHYFQNTQGLIFVVDSNDRDRVVEARD--ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (181)
Q Consensus 79 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
-...+--..++|++|++..+++.-..+ .|..+ +....+.|+|+|+||+|+-..+.+.+-.+.+........+
T Consensus 238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence 111123457999999998876655544 33333 2223589999999999998776655544444333333445
Q ss_pred eEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 153 WYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 153 ~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
++++++|+.+.+|+.++-...++.+.
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHH
Confidence 89999999999999998888887765
No 266
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=3.7e-16 Score=112.61 Aligned_cols=160 Identities=18% Similarity=0.301 Sum_probs=105.3
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCccc---ccCcccc-eEEEEEECCEEEEEEEcCCCCC-------ccccccccc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGF-NVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF 82 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~t~~~-~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~ 82 (181)
....++|+++|..|+||||+||+|++.+... ...+.+. ......+.+..+.+||+||-++ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4678999999999999999999999755322 1112221 1222334558899999999654 666677888
Q ss_pred ccccEEEEEEECCCcccHHHHHHH-HHHHhcCCCCCCCeEEEEEeCCCCCCCC----------C--HhH-HHhhh--CCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDE-LHRMLNEDELRDAVLLVFANKQDLPNAM----------N--AAE-ITDKL--GLH 146 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~piivv~nK~D~~~~~----------~--~~~-~~~~~--~~~ 146 (181)
...|++++++++.++. -..+.. +..++... .+.++++++|++|...+. + .++ +...- ...
T Consensus 116 ~~~DLvL~l~~~~dra--L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 116 PKLDLVLWLIKADDRA--LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred hhccEEEEeccCCCcc--ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 8999999999997653 233333 33333321 248999999999975431 0 011 11100 011
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.++ .-.|++..|...++|++.+...+++.+.
T Consensus 192 ~~q-~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQ-EVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHh-hcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111 1236778889999999999999999875
No 267
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.65 E-value=2.1e-15 Score=114.10 Aligned_cols=133 Identities=27% Similarity=0.404 Sum_probs=100.2
Q ss_pred CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCC
Q 030193 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (181)
||.++....+..++..+.+||++|+...+..|.+++.++++++||+|+++. ..+......+..++.....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 356677777888899999999999999999999999999999999999874 4566777788888887766
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHhHH----HhhhCCC-ccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 117 RDAVLLVFANKQDLPNA------------------MNAAEI----TDKLGLH-SLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~------------------~~~~~~----~~~~~~~-~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
.++|+++++||.|+..+ ...++. ...+... .-.+..+.+..++|.+..++..+|+.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 78999999999997431 111111 1111110 001245666779999999999999999
Q ss_pred HHHhhh
Q 030193 174 SNNIAT 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+..
T Consensus 307 ~~~i~~ 312 (317)
T cd00066 307 KDIILQ 312 (317)
T ss_pred HHHHHH
Confidence 887754
No 268
>PRK12740 elongation factor G; Reviewed
Probab=99.65 E-value=4.5e-15 Score=122.70 Aligned_cols=105 Identities=19% Similarity=0.153 Sum_probs=78.0
Q ss_pred EcCCCCChHHHHhhhhcCCc--------------cc-------ccCcccceEEEEEECCEEEEEEEcCCCCCcccccccc
Q 030193 23 VGLDAAGKTTILYKLKLGEI--------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 23 ~G~~~~GKSsli~~l~~~~~--------------~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 81 (181)
+|++++|||||+++|+...- .+ ...|.+.....+.+.++.+++|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999954210 00 1124445556788899999999999999888888888
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++.+|++++|+|++....... ...|..... .++|+++|+||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~-~~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQT-ETVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 899999999999986544332 233333222 4689999999999874
No 269
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.64 E-value=6.4e-15 Score=112.34 Aligned_cols=132 Identities=26% Similarity=0.394 Sum_probs=99.4
Q ss_pred cccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCCC
Q 030193 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.++....+...+..+.+||++|+...+..|.+++.++++++||+|+++. ..+......|..++......
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 45666777778889999999999999999999999999999999999864 35677777888888877777
Q ss_pred CCeEEEEEeCCCCCCC-----------------CCHhH----HHhhhCCCcc--CCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 118 DAVLLVFANKQDLPNA-----------------MNAAE----ITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 118 ~~piivv~nK~D~~~~-----------------~~~~~----~~~~~~~~~~--~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
+.|+++++||.|+..+ ...+. +...+....- .+..+.+..++|.+-.++..+|+.+.
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 8999999999998531 11111 1222211110 12346667788999999999999888
Q ss_pred HHhhh
Q 030193 175 NNIAT 179 (181)
Q Consensus 175 ~~l~~ 179 (181)
+.+.+
T Consensus 331 ~~I~~ 335 (342)
T smart00275 331 DIILQ 335 (342)
T ss_pred HHHHH
Confidence 87654
No 270
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.1e-14 Score=107.89 Aligned_cols=153 Identities=26% Similarity=0.285 Sum_probs=98.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc-------ccccCcccceEEEEEECCEEEEEEEcCCCCCcc----c---cccccccc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR----P---LWRHYFQN 84 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~----~---~~~~~~~~ 84 (181)
.|+++|-|++|||||++++.+.++ .+-.|..+.... .....|.+-|.||--.-. - ..-..+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 578999999999999999987653 233444444222 455679999999932111 1 12233467
Q ss_pred ccEEEEEEECCCcc------cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCccCCcceEEEE
Q 030193 85 TQGLIFVVDSNDRD------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 85 ~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
|.+++.|+|++..+ .+..+...+..+- ..+.++|.++|+||+|+... +..+++...+.... ....+++
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~--~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~--~~~~~~~- 312 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS--PKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL--GWEVFYL- 312 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhh--HHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc--CCCccee-
Confidence 99999999998543 2333333333332 23357899999999996543 34444444443211 1111233
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+|+.+++|++++...+.+.+.+
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 313 ISALTREGLDELLRALAELLEE 334 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 271
>PRK09866 hypothetical protein; Provisional
Probab=99.58 E-value=6.2e-14 Score=112.16 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=71.2
Q ss_pred EEEEEEEcCCCCC-----cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030193 61 ISFTVWDVGGQDK-----IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 61 ~~~~~~d~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..+.++||||-.. ........+..+|+++||+|+.+..+. .+..+.+.++... .+.|+++|+||+|+.+..+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~--~DeeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSI--SDEEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCCh--hHHHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 4678999999532 122233467899999999999764332 2334445454322 2369999999999865322
Q ss_pred --HhHHHhhhCCC--ccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 136 --AAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.+.+....... ........+|++||++|.|++++++.|.+
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 33333321100 00001225899999999999999999887
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.57 E-value=6.2e-14 Score=108.69 Aligned_cols=78 Identities=28% Similarity=0.386 Sum_probs=53.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-cc--CcccceEEEEE------------------------ECCEEEEEEEcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TI--PTIGFNVETVE------------------------YKNISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~--~t~~~~~~~~~------------------------~~~~~~~~~d~~g 70 (181)
++|+++|.||+|||||+|+|++..... .. .|.+.....+. .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876531 12 12222221111 1236789999999
Q ss_pred C----CCcccccccc---cccccEEEEEEECC
Q 030193 71 Q----DKIRPLWRHY---FQNTQGLIFVVDSN 95 (181)
Q Consensus 71 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 95 (181)
- .........+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333333333 78999999999996
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.56 E-value=4.4e-14 Score=119.52 Aligned_cols=140 Identities=22% Similarity=0.225 Sum_probs=91.6
Q ss_pred CChHHHHhhhhcCCcccccC---cccceEEEEEECC------------------EEEEEEEcCCCCCccccccccccccc
Q 030193 28 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYKN------------------ISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 28 ~GKSsli~~l~~~~~~~~~~---t~~~~~~~~~~~~------------------~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
++||||+.++.+.......+ |..+..+.+.... -.+.+||||||+.|...+...+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 35999999999877653222 3333223332211 13899999999999888888888899
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------------------HhHHHh----
Q 030193 87 GLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------------------AAEITD---- 141 (181)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------------------~~~~~~---- 141 (181)
++++|+|+++ +++++.. ..+.. .++|+++|+||+|+..... .+++..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999975 3333222 22332 3689999999999864211 111110
Q ss_pred ---hhCCCccC----------CcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 142 ---KLGLHSLR----------QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 142 ---~~~~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.+....+. ...++++++||++|+|++++++.|..
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 01111111 23578999999999999999998864
No 274
>PRK13768 GTPase; Provisional
Probab=99.56 E-value=1e-14 Score=107.09 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=73.6
Q ss_pred EEEEEEEcCCCCCc---ccccccccc---c--ccEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 61 ISFTVWDVGGQDKI---RPLWRHYFQ---N--TQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~~~d~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
..+.+||+||+.+. +..+..+.+ . .+++++++|+.......... .++........ .+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 46899999997553 233322222 2 78999999996533222222 22222111111 478999999999998
Q ss_pred CCCCHhHHHhhhCC-----------------------CccCC--cceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 132 NAMNAAEITDKLGL-----------------------HSLRQ--RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 132 ~~~~~~~~~~~~~~-----------------------~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+..+.++..+.+.. ..++. ...+++++|++++.|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76555444433321 00111 2247899999999999999999998875
No 275
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.56 E-value=4.5e-15 Score=94.53 Aligned_cols=139 Identities=20% Similarity=0.201 Sum_probs=93.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCC----CCcccccccccccccEEEEEEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~----~~~~~~~~~~~~~~d~~i~v~d 93 (181)
-||+++|..|+|||||.+++.+.... +..|..+.+ .+ =-.+||||. .++..........+|++++|-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~-----~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEF-----ND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-hcccceeec-----cC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 47899999999999999999887752 222322211 11 113699994 3333334444578999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
++++++. ....+..+ ...|+|-|+||.|+.+....+..++.+.....+ ++|++|+.++.|++++++.+
T Consensus 74 and~~s~--f~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~----~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESR--FPPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAGAE----PIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCcccc--CCcccccc------cccceEEEEecccccchHhHHHHHHHHHHcCCc----ceEEEeccCcccHHHHHHHH
Confidence 9887542 22222222 245699999999998654444444444333333 79999999999999999988
Q ss_pred HHH
Q 030193 174 SNN 176 (181)
Q Consensus 174 ~~~ 176 (181)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 653
No 276
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.55 E-value=7.4e-14 Score=107.11 Aligned_cols=160 Identities=17% Similarity=0.212 Sum_probs=114.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC--cccc-------cC------cccce----EEEEEECCEEEEEEEcCCCCCccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT-------IP------TIGFN----VETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~-------~~------t~~~~----~~~~~~~~~~~~~~d~~g~~~~~~ 76 (181)
.-.+|+|+.+..+|||||+..|+.+. |... .. ..++. -+.+.+++++++|+|||||.+|-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45689999999999999999998754 2111 11 12222 245788999999999999999999
Q ss_pred ccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh---CCC--ccCCc
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GLH--SLRQR 151 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~---~~~--~~~~~ 151 (181)
...+.+.-.|++++++|+.+- .+.+..-++.+.+. .+.+.|+|+||+|.++....+-+...+ ... ...+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 999999999999999999742 23344445555555 478889999999988764333222222 111 12346
Q ss_pred ceEEEEcccCCCC----------CHHHHHHHHHHHhhhc
Q 030193 152 HWYIQSTCATSGE----------GLYEGLDWLSNNIATK 180 (181)
Q Consensus 152 ~~~~~~~S~~~~~----------~i~~~~~~i~~~l~~~ 180 (181)
++|++-.|+.+|. ++..||+.|.+.+.+.
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 7898889988753 5889999999887653
No 277
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.6e-14 Score=106.12 Aligned_cols=159 Identities=17% Similarity=0.097 Sum_probs=109.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC------cccce-----EE---------EE------EEC------CEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP------TIGFN-----VE---------TV------EYK------NIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------t~~~~-----~~---------~~------~~~------~~~ 62 (181)
+-.++|+.+|+..+|||||..+|.+-....... |+... ++ .+ ... -.+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 568999999999999999999998754321110 00000 00 00 001 146
Q ss_pred EEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhH
Q 030193 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAE 138 (181)
Q Consensus 63 ~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~ 138 (181)
+.|.|.|||+-..+.+-+...-.|++++|+++++++...+..+.+..+--. .-..++++.||+|+++.+. .++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence 899999999887777666666789999999999876655555555443111 1367999999999998643 333
Q ss_pred HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+.+..+-. --.+.|++++||.++.|++-+++.|.+.+.
T Consensus 165 Ik~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 165 IKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 33322222 124678999999999999999999998875
No 278
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.54 E-value=3e-14 Score=118.32 Aligned_cols=113 Identities=21% Similarity=0.116 Sum_probs=79.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC------------cccc-------cCcccceEE----EEEECCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTT-------IPTIGFNVE----TVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~-------~~t~~~~~~----~~~~~~~~~~~~d~~g~ 71 (181)
++..||+++|+.++|||||+++|+... +.+. ..|...... .+++.++.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456799999999999999999997421 0111 113332222 24567899999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+|......+++.+|++++|+|+.+.... .....|..... .+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~-~t~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMP-QTETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCc-cHHHHHHHHHH----cCCCEEEEEEChhccc
Confidence 99988888888999999999999753211 11222322222 3578889999999864
No 279
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.52 E-value=2.7e-14 Score=102.35 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=93.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-----cCcccceEEEEEECCEEEEEEEcCCCCCcc-------ccc----ccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLW----RHY 81 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~----~~~ 81 (181)
.+|+++|..|+||||++|.+++...... ..|...........+..+.++||||-.+.. ... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4799999999999999999999885432 236666666678899999999999932111 111 112
Q ss_pred cccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CCccCCcceEEE
Q 030193 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG----LHSLRQRHWYIQ 156 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 156 (181)
..+.|++|||+++.+.. .-....+.+...+...- -..++||.|..|.......++..+... ...++.++-.|.
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 35689999999997321 11222334445544321 246899999999776655433322110 111222222344
Q ss_pred EcccC------CCCCHHHHHHHHHHHhhh
Q 030193 157 STCAT------SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 157 ~~S~~------~~~~i~~~~~~i~~~l~~ 179 (181)
..+.+ ....+.+|++.+-+.+.+
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 44444 335578888888776654
No 280
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.51 E-value=1.3e-13 Score=114.79 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=78.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc------------ccccC-------cccceEEEEEE----CCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTIP-------TIGFNVETVEY----KNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~~~-------t~~~~~~~~~~----~~~~~~~~d~~g~ 71 (181)
++..+|+++|+.++|||||+.+|+...- .+..+ |.......+.+ .++.++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 5567899999999999999999975321 01111 22222222322 4788999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+|.......++.+|++++|+|+...-. ......|..... .+.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~-~~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVM-PQTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCC-ccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 9998888888899999999999875322 223334443333 256789999999976
No 281
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.50 E-value=2.6e-13 Score=99.22 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=75.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc----cCcccceEEEEEECCEEEEEEEcCCCCCccc---c-------ccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---L-------WRH 80 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~-------~~~ 80 (181)
...++|+++|.+|+|||||+|++++...... ..|...........+..++++||||-..... . ...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 6789999999999999999999999875321 2244444455566788999999999654421 0 122
Q ss_pred ccc--cccEEEEEEECCCcccHHH----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 81 YFQ--NTQGLIFVVDSNDRDRVVE----ARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 81 ~~~--~~d~~i~v~d~~~~~s~~~----~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++. ..++++||..++.. ++.. +.+.+.+.+... --.++++|.||+|...+
T Consensus 109 ~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 332 47888888766532 2222 223333333311 11579999999998643
No 282
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.6e-13 Score=103.59 Aligned_cols=153 Identities=17% Similarity=0.061 Sum_probs=112.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc------ccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.|+..|+-..|||||+..+.+..... -.-|++..+.....++..+.++|+|||+++-...-......|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47889999999999999999877542 123677777777778889999999999999988888888999999999
Q ss_pred ECCC-cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSND-RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~-~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|+++ ......-.-...+.+. ....++|+||+|..+....++..+....... -.+.++|.+|+++|.|++++.+
T Consensus 82 ~~deGl~~qtgEhL~iLdllg-----i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 82 AADEGLMAQTGEHLLILDLLG-----IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred eCccCcchhhHHHHHHHHhcC-----CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHH
Confidence 9953 2222222222333333 3456999999999876544444333321111 2345789999999999999999
Q ss_pred HHHHHh
Q 030193 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~l 177 (181)
.|.+..
T Consensus 156 ~l~~L~ 161 (447)
T COG3276 156 ELIDLL 161 (447)
T ss_pred HHHHhh
Confidence 999876
No 283
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.48 E-value=8.9e-13 Score=98.11 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=72.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccCccc--ceEEEEEECCEEEEEEEcCCCCCcccc-------ccccc-
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL-------WRHYF- 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~~- 82 (181)
...++|+++|.+|+||||++|++++.... +..++.+ .........+.+++++||||-.+.... ...++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 57889999999999999999999988743 2222222 222233457889999999996543211 11111
Q ss_pred -ccccEEEEEEECCCcccHHHH----HHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 83 -QNTQGLIFVVDSNDRDRVVEA----RDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 -~~~d~~i~v~d~~~~~s~~~~----~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
...|+++||..++.. .+... .+.+...+... .-.+++++.|+.|...
T Consensus 116 ~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 258999999665422 22222 23333333321 1247999999999763
No 284
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.48 E-value=3.3e-13 Score=101.60 Aligned_cols=134 Identities=27% Similarity=0.465 Sum_probs=98.6
Q ss_pred cCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc----------cHHHHHHHHHHHhcCCC
Q 030193 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~ 115 (181)
.||+|+....+..++..+.++|++||..-+.-|.+++.+++++|||+++++.+ .+......|..++....
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 35788888999999999999999999999999999999999999999998643 23333456777777777
Q ss_pred CCCCeEEEEEeCCCCCCC-----------------CCHhH----HHhhhCCCcc-CCcceEEEEcccCCCCCHHHHHHHH
Q 030193 116 LRDAVLLVFANKQDLPNA-----------------MNAAE----ITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~-----------------~~~~~----~~~~~~~~~~-~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
..+.++|+++||.|+..+ ...++ ++..+..... ....+.+-.++|.+-.+++.+|+.+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 788999999999999532 11111 1111111101 1134555667899999999999998
Q ss_pred HHHhhh
Q 030193 174 SNNIAT 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+..
T Consensus 340 ~d~Ii~ 345 (354)
T KOG0082|consen 340 TDTIIQ 345 (354)
T ss_pred HHHHHH
Confidence 887653
No 285
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.48 E-value=9.5e-14 Score=100.13 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=99.6
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcccc--------cC---------------cc-----------cceE---E
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--------IP---------------TI-----------GFNV---E 54 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------~~---------------t~-----------~~~~---~ 54 (181)
...++++.|+++|..|||||||+.+|...-.... .| |. +.+- +
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 4457889999999999999999999954211100 00 00 0000 0
Q ss_pred E-------E---------EECCEEEEEEEcCCCCC-cc--c----ccccc-cccccEEEEEEECCC---cccHHHHHHHH
Q 030193 55 T-------V---------EYKNISFTVWDVGGQDK-IR--P----LWRHY-FQNTQGLIFVVDSND---RDRVVEARDEL 107 (181)
Q Consensus 55 ~-------~---------~~~~~~~~~~d~~g~~~-~~--~----~~~~~-~~~~d~~i~v~d~~~---~~s~~~~~~~~ 107 (181)
. + ........++||||+-. |. + +...+ -...-+++||+|..+ +..|....-+-
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 0 0 01346689999999732 11 0 11111 123557889999753 55555555555
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh-------hhCC-------CccCC---------cceEEEEcccCCCC
Q 030193 108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD-------KLGL-------HSLRQ---------RHWYIQSTCATSGE 164 (181)
Q Consensus 108 ~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~-------~~~~-------~~~~~---------~~~~~~~~S~~~~~ 164 (181)
-.++.+ .+.|.+++.||+|+.+..-..+|.. .+.. ...+. +++..+-+|+.+|.
T Consensus 174 cSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 174 CSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 555655 6799999999999987532222222 1110 00000 24567889999999
Q ss_pred CHHHHHHHHHHHhh
Q 030193 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~i~~~~~~i~~~l~ 178 (181)
|.+++|..+.+.+.
T Consensus 251 G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 251 GFDDFFTAVDESVD 264 (366)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999887664
No 286
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.47 E-value=1.5e-13 Score=103.93 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=69.7
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA- 137 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~- 137 (181)
.++.+.|+||+|....... ....+|.+++|.++...+.++....- .+ ....++|+||+|+.......
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~------E~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IM------ELADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hh------hhhheEEeehhcccchhHHHH
Confidence 4688999999997533322 34679999999875444444333321 11 23348999999987644322
Q ss_pred ---HHHhhhCCCccC--CcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 138 ---EITDKLGLHSLR--QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 138 ---~~~~~~~~~~~~--~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
++...+...... .+..+++.+||+++.|++++++.+.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 333333321111 12347999999999999999999988653
No 287
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.47 E-value=3.1e-13 Score=99.65 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=105.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEEC----CEEEEEEEcCCCCCcccccccccccc----cE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNT----QG 87 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~----d~ 87 (181)
..-+|+|+|+.++||||||.+|.+-+........++.+..+..+ -.++.+|-..|+..+..+....+... -+
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 56799999999999999999999988433333444444333322 25899999999888777766555432 47
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC-----------------------------------------------------
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNED----------------------------------------------------- 114 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------------------------------------- 114 (181)
+|++.|+++|+.+-...+.|...+.++
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 888999999865444333333221110
Q ss_pred --------CCCCCeEEEEEeCCCCCCCCCH------------hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 115 --------ELRDAVLLVFANKQDLPNAMNA------------AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 115 --------~~~~~piivv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
..-++|++||+||||...-.+. +...+.+++ ..+...|.+|+++..|++-++.+|+
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCL----r~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCL----RYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHH----HcCceeEEeecccccchHHHHHHHH
Confidence 0024679999999998542111 111122222 2355678899999999999999999
Q ss_pred HHhh
Q 030193 175 NNIA 178 (181)
Q Consensus 175 ~~l~ 178 (181)
+.+.
T Consensus 287 hr~y 290 (473)
T KOG3905|consen 287 HRSY 290 (473)
T ss_pred HHhc
Confidence 8765
No 288
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.46 E-value=4.3e-13 Score=97.01 Aligned_cols=138 Identities=12% Similarity=0.051 Sum_probs=83.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.....|+++|.+|+|||||++.+.+..-.. .....+. +......+.++.++|+||+. .... ...+.+|++++|+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEe
Confidence 446679999999999999999998753211 1111111 12233467889999999864 2222 23478999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHH----hhhCCCccCCcceEEEEcccCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEIT----DKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+..... .....+...+.. .+.| +++|+||+|+.+... .+++. ..+....+ .+.+++.+||++.
T Consensus 113 a~~~~~--~~~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~ 181 (225)
T cd01882 113 ASFGFE--METFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVH 181 (225)
T ss_pred cCcCCC--HHHHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccC
Confidence 975332 222333344433 3466 456999999874322 22222 22221111 1347889998876
No 289
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.45 E-value=2.8e-12 Score=90.99 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=63.5
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhH
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAE 138 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~ 138 (181)
....++++.|..-.....+ .-++.++.|+|+.+.++... .....+ ...-++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGPGI------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHhHh------hhccEEEEEhhhccccccccHHH
Confidence 4567788888422222222 12678999999975444211 111111 2234899999999853 22333
Q ss_pred HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+...... + +...+++++|+++|+|++++++++.+.+.-
T Consensus 160 ~~~~~~~--~-~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 160 MERDAKK--M-RGEKPFIFTNLKTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred HHHHHHH--h-CCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 2222211 1 224579999999999999999999987653
No 290
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.45 E-value=4.4e-13 Score=113.00 Aligned_cols=112 Identities=19% Similarity=0.141 Sum_probs=80.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc------------ccccC-------cccceEEEEEE----------------C
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTIP-------TIGFNVETVEY----------------K 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~~~-------t~~~~~~~~~~----------------~ 59 (181)
++..+|+|+|+.++|||||+++|+...- .+..+ |.......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 6778999999999999999999975331 01111 22222222322 2
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
++.++++|||||.+|.......++.+|++|+|+|+.+.-.. .....|..... .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 67889999999999999888888999999999999754221 22334444433 478999999999987
No 291
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.44 E-value=4.5e-13 Score=99.70 Aligned_cols=145 Identities=20% Similarity=0.171 Sum_probs=102.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc-----------------cc-------------------ccCcccceEEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-----------------VT-------------------TIPTIGFNVETVEY 58 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-----------------~~-------------------~~~t~~~~~~~~~~ 58 (181)
+...+.+.+|...-||||||-+|+.+.- .+ ..-|+++.+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4567899999999999999999976420 00 01155666666777
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHH-H--HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-R--DELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~--~~~~~~~~~~~~~~~piivv~nK~D~~~~~- 134 (181)
++.+|.+-|||||++|...+.....-||++|+++|+ +.++... . ..+...+. -..+++..||+||++-.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLLG-----IRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHhC-----CcEEEEEEeeecccccCH
Confidence 889999999999999998888777889999999999 3332222 1 23444443 36799999999998743
Q ss_pred -CHhHHHhhhCCCcc---CCcceEEEEcccCCCCCHH
Q 030193 135 -NAAEITDKLGLHSL---RQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 135 -~~~~~~~~~~~~~~---~~~~~~~~~~S~~~~~~i~ 167 (181)
..+++...+. .++ .-....+++.||..|.|+-
T Consensus 157 ~~F~~I~~dy~-~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EVFEAIVADYL-AFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHH-HHHHHcCCCcceEEechhccCCccc
Confidence 3344444332 111 1123478999999999974
No 292
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.4e-12 Score=102.42 Aligned_cols=153 Identities=22% Similarity=0.210 Sum_probs=105.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCC----------------------c-----cc-------ccCcccceEEEEEEC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGE----------------------I-----VT-------TIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~----------------------~-----~~-------~~~t~~~~~~~~~~~ 59 (181)
....++++++|+.++|||||+-+++..- | .+ ..-|++.....++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 3467899999999999999999996420 0 00 011455556667767
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHH------HHHHHHHhcCCCCCCCeEEEEEeCCCCCC-
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA------RDELHRMLNEDELRDAVLLVFANKQDLPN- 132 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~~piivv~nK~D~~~- 132 (181)
...++|+|+|||.+|-.........+|++++|+|++.. .|+.- ......+++.. .-..++|++||+|+++
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSW 330 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCc
Confidence 78999999999999998888888899999999999742 22211 11222222221 1457899999999986
Q ss_pred -CCCHhHHHhhh-----CCCccCCcceEEEEcccCCCCCHHHH
Q 030193 133 -AMNAAEITDKL-----GLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 133 -~~~~~~~~~~~-----~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+...+++...+ ....+...++.+++||..+|+|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 33444554433 23344555678999999999997543
No 293
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.43 E-value=1.6e-13 Score=99.70 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCCccccccccc--------ccccEEEEEEECCC---cccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 62 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSND---RDRVVEAR-DELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 62 ~~~~~d~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
.+.++|||||.++-..+.... ...-++++++|+.. +..|-... ..+.-.++ .+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 789999999977655544333 34558889999863 33332221 12222222 3799999999999
Q ss_pred CCCCC---------CH-----------hHHHhhhCCCccCC-cce-EEEEcccCCCCCHHHHHHHHHHHh
Q 030193 130 LPNAM---------NA-----------AEITDKLGLHSLRQ-RHW-YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 130 ~~~~~---------~~-----------~~~~~~~~~~~~~~-~~~-~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+.+.. +. ..+...+. ..+.. ... .+++.|+++++|+++++..+-+++
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~-~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIA-ELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHH-HHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 98621 01 11111111 11111 223 688999999999999999988764
No 294
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.42 E-value=9.3e-13 Score=100.40 Aligned_cols=156 Identities=14% Similarity=0.138 Sum_probs=82.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-cC-----cccceEEEEEECCE-EEEEEEcCCCCCccccccc-----cc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP-----TIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRH-----YF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~-----t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~~~~-----~~ 82 (181)
..+++|+|+|++|+|||||||+|.|-...+. .. .+......+..... .+.+||.||.......... -+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5789999999999999999999976332211 11 11123344444543 6999999995322222222 24
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--C-----C------CCHhHHHhhhCCCccC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP--N-----A------MNAAEITDKLGLHSLR 149 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~--~-----~------~~~~~~~~~~~~~~~~ 149 (181)
...|.+|++.+- .|...+-++...+.+ .++|+.+|-||+|.. . + .-+++++... ...++
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c-~~~L~ 184 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENC-LENLQ 184 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHH-HHHHH
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHH-HHHHH
Confidence 568887776554 466777677766665 579999999999961 0 1 1122322221 11111
Q ss_pred C---cceEEEEcccCCC--CCHHHHHHHHHHHhh
Q 030193 150 Q---RHWYIQSTCATSG--EGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~---~~~~~~~~S~~~~--~~i~~~~~~i~~~l~ 178 (181)
+ ...++|-+|+.+- ..+..+.+.+.+.|.
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 2 2346888888864 457778888777654
No 295
>PTZ00416 elongation factor 2; Provisional
Probab=99.42 E-value=1.1e-12 Score=110.44 Aligned_cols=112 Identities=20% Similarity=0.176 Sum_probs=78.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc------------ccccC-------cccceEEEEEEC----------CEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTIP-------TIGFNVETVEYK----------NISFTV 65 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~~~-------t~~~~~~~~~~~----------~~~~~~ 65 (181)
++..+|+++|+.++|||||+++|+...- .+..+ |+......+.+. ++.+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 5567999999999999999999986321 01111 111111223332 678999
Q ss_pred EEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+||||+.+|.......++.+|++++|+|+.+.-.. .....|..... .++|+++++||+|..
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV-QTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 99999999988888888999999999999753221 22334444333 368999999999986
No 296
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.41 E-value=7.2e-13 Score=95.55 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=90.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCc---------------------ccceEEEEE--------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPT---------------------IGFNVETVE-------- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~--~~~~~t---------------------~~~~~~~~~-------- 57 (181)
.+...|+|-|+||+|||||++.|... .. ....|+ .+..+..+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35789999999999999999999531 10 001111 112222221
Q ss_pred ------------ECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 58 ------------YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 58 ------------~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
..++.+.|++|.|--+...... .-+|.+++|..+.--+..+....-+.++ .-++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~---~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIA---DMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHH---TTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHH---HhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEE
Confidence 1568899999998644443332 5599999999997655555555444444 349999
Q ss_pred eCCCCCCCC-CHhHHHhhhCCC--ccCCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 126 NKQDLPNAM-NAAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 126 nK~D~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
||.|..... ...+++..+.+. .-..+..|++.|||.++.|++++++.|.+.
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 999954322 223344333322 222345689999999999999999999874
No 297
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.5e-12 Score=104.79 Aligned_cols=156 Identities=22% Similarity=0.179 Sum_probs=104.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-----ccCcccceEEEEE----------------ECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~t~~~~~~~~~----------------~~~~~~~~~d~~g~~~ 73 (181)
-+.+-|+|+|+..+|||-|+..+.+.+... -...++..++... ++---+.++|||||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 356778999999999999999998755431 1223333332221 2223578899999999
Q ss_pred cccccccccccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------C----------
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------M---------- 134 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------~---------- 134 (181)
|.+.+.+....||.+|+|+|+.. +++++. + +.++. .+.|+|+.+||+|-... .
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiES----i-~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIES----I-NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHH----H-HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 99999999999999999999953 333322 2 22332 47999999999996421 0
Q ss_pred --C-------HhHHHhhh-----CCCccC-C----cceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 135 --N-------AAEITDKL-----GLHSLR-Q----RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 135 --~-------~~~~~~~~-----~~~~~~-~----~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
. ...+.-.+ ....+. + .-+.+++|||.+|+|+-+|+-+|+++..
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 0 11111111 111121 1 1256899999999999999999988644
No 298
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.36 E-value=5.1e-12 Score=93.97 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=71.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccccc-----------CcccceEEEEEE--C--CEEEEEEEcCCCCC--------
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVETVEY--K--NISFTVWDVGGQDK-------- 73 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~t~~~~~~~~~~--~--~~~~~~~d~~g~~~-------- 73 (181)
.++|+|+|.+|+|||||+|.|++....... ++..+....... . .+.++++||||-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999987643221 122233332222 2 36889999999211
Q ss_pred ----------ccc--------cc-ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 74 ----------IRP--------LW-RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 74 ----------~~~--------~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|.. .+ ...-...|++||+++++. .++...+-..++.+. ..+++|.|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 100 01 011124799999999974 345566655666666 368999999999987654
Q ss_pred CHhHHHh
Q 030193 135 NAAEITD 141 (181)
Q Consensus 135 ~~~~~~~ 141 (181)
+...+..
T Consensus 159 el~~~k~ 165 (281)
T PF00735_consen 159 ELQAFKQ 165 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 299
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.35 E-value=7.3e-11 Score=84.47 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=58.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCcccceEEEEEECCEEEEEEEcCCCC--------Cccccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~ 84 (181)
-.-+|+++|-|.+|||||+..+....-. + ...|...--..+.+.+..+++.|.||-- +.+. ..+..+.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQ-viavArt 139 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQ-VIAVART 139 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCce-EEEEeec
Confidence 3568999999999999999999876532 1 1222222223467789999999999932 2222 3344578
Q ss_pred ccEEEEEEECCCccc
Q 030193 85 TQGLIFVVDSNDRDR 99 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s 99 (181)
+|++++|.|+...+.
T Consensus 140 aDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 140 ADLILMVLDATKSED 154 (364)
T ss_pred ccEEEEEecCCcchh
Confidence 999999999986543
No 300
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.35 E-value=2.1e-11 Score=87.14 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=88.4
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCcc-------cccC----------cccceEEEE----------------
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIP----------TIGFNVETV---------------- 56 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------~~~~----------t~~~~~~~~---------------- 56 (181)
+.........|+++|+.|+|||||+++++..... .... ..+.....+
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHA 94 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHH
Confidence 3444456788999999999999999999753100 0000 001111110
Q ss_pred ----EECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 57 ----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 57 ----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
...+..+.++|+.|.-.... .+....+..+.|+|+.+.+.... . .... ...|.++++||+|+.+
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~------~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPGM------FKEADLIVINKADLAE 162 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHhH------HhhCCEEEEEHHHccc
Confidence 01245778888888311111 11123556677888865432111 1 1111 2467899999999975
Q ss_pred CCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 133 AMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
... .++....+.. . ...++++++|++++.|++++++++.+..
T Consensus 163 ~~~~~~~~~~~~l~~--~-~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKK--I-NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHH--h-CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 322 2333332211 1 1235799999999999999999998753
No 301
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.34 E-value=9.4e-12 Score=91.03 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=73.3
Q ss_pred CCcccccccccccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccC
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLR 149 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (181)
+++..+...+++++|.+++|+|+.++. ++..+..|+... .. .++|+++|+||+|+.+..... +....+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 678888888999999999999999877 888888777644 32 579999999999997543222 222222 2
Q ss_pred CcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 150 QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
+.+++++++||++|.|++++++.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 34568999999999999999998764
No 302
>PTZ00258 GTP-binding protein; Provisional
Probab=99.34 E-value=1.9e-11 Score=94.19 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=56.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEEC-----------------CEEEEEEEcCCCCC-
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDK- 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~- 73 (181)
.+.++|+++|.||+|||||+|+|++.... .+.| |.+.+...+... +.+++++|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 67889999999999999999999887643 2223 445555554443 23589999999321
Q ss_pred ------cccccccccccccEEEEEEECC
Q 030193 74 ------IRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 74 ------~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
.....-..++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112223457899999999974
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.33 E-value=3e-11 Score=91.00 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=65.3
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~ 138 (181)
.++.+.|+||+|..... . .....+|.++++.+....+.+.... ... .++|.++|+||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e--~-~i~~~aD~i~vv~~~~~~~el~~~~---~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE--V-DIANMADTFVVVTIPGTGDDLQGIK---AGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh--h-HHHHhhceEEEEecCCccHHHHHHH---HHH------hhhccEEEEEcccccchhHHHH
Confidence 46889999999853222 1 2346678888886553222222222 122 2577899999999876543222
Q ss_pred HHhhh--CC----CccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 139 ITDKL--GL----HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 139 ~~~~~--~~----~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
....+ .. .....+..+++++|++++.|++++++++.+.+
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11111 11 11112234689999999999999999998864
No 304
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.33 E-value=1.2e-11 Score=96.38 Aligned_cols=130 Identities=26% Similarity=0.428 Sum_probs=94.0
Q ss_pred cccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc----------cHHHHHHHHHHHhcCCCC
Q 030193 48 TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDEL 116 (181)
Q Consensus 48 t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~ 116 (181)
|+++....+.. .+..+.++|++|+...+..|.+++.+.+.+|||+++++.+ .+......|..+......
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 35666677888 8899999999999999999999999999999999987532 466667788888887777
Q ss_pred CCCeEEEEEeCCCCCCC--------------------CCHhHHHh----hhCCCccCC---cceEEEEcccCCCCCHHHH
Q 030193 117 RDAVLLVFANKQDLPNA--------------------MNAAEITD----KLGLHSLRQ---RHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~--------------------~~~~~~~~----~~~~~~~~~---~~~~~~~~S~~~~~~i~~~ 169 (181)
.+.|++|++||.|+..+ ...+.... .+....-.. ..+.+..|+|.+..++..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 78999999999997421 11122111 111111111 4456667999999999999
Q ss_pred HHHHHHHh
Q 030193 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~l 177 (181)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 99887653
No 305
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.32 E-value=1.9e-11 Score=96.33 Aligned_cols=162 Identities=14% Similarity=0.198 Sum_probs=103.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEEC------CEEEEEEEcCCCCCccccccccccc----c
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK------NISFTVWDVGGQDKIRPLWRHYFQN----T 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~d~~g~~~~~~~~~~~~~~----~ 85 (181)
..-.|+|+|..++|||||+.+|.+.+ ...++.+..|..++.. ..++.+|...|...+..+....+.. -
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 45799999999999999999997765 3445556555554432 2579999999977777776655543 2
Q ss_pred cEEEEEEECCCcccHHHHHHH-----------------------------HHHHhc---CC-----------------C-
Q 030193 86 QGLIFVVDSNDRDRVVEARDE-----------------------------LHRMLN---ED-----------------E- 115 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~-----------------------------~~~~~~---~~-----------------~- 115 (181)
-++++|+|.+.|+.+....+. |.++.. .. .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 478899999998755422221 111110 00 0
Q ss_pred ------------CCCCeEEEEEeCCCCCCCCCHh--------HHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 116 ------------LRDAVLLVFANKQDLPNAMNAA--------EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 116 ------------~~~~piivv~nK~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.-++|++||++|+|.....+.+ ++...+-....-+++...|.||++...|++.++.+|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 0146999999999975321100 11111111111234556777999999999999999988
Q ss_pred Hhhh
Q 030193 176 NIAT 179 (181)
Q Consensus 176 ~l~~ 179 (181)
.+..
T Consensus 262 ~l~~ 265 (472)
T PF05783_consen 262 RLYG 265 (472)
T ss_pred Hhcc
Confidence 7653
No 306
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=7.2e-12 Score=102.68 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=85.9
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCC--------------cccccC-------cccceEEEEEECC-EEEEEEEcCCC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTTIP-------TIGFNVETVEYKN-ISFTVWDVGGQ 71 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--------------~~~~~~-------t~~~~~~~~~~~~-~~~~~~d~~g~ 71 (181)
.++..+|+|+|+.++||||+..+++... +.+..+ |+......+.+++ +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3678899999999999999999996421 111111 3334445677785 99999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
-+|.....+.++-+|+++.|+|+..--. ......|....+ .++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~-~QTEtv~rqa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVE-PQTETVWRQADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCee-ecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence 9999999999999999999999964322 233344544443 4899999999999764
No 307
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.32 E-value=7.1e-12 Score=82.04 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=76.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-c-CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-I-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~-~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+||+++|+.|+|||+|+.++....+... . +|.+ +......+.+.++.+++|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 4899999999999999999977766421 1 3332 3334455668889999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
...++... |...+. .......|.++++||.|+.+.. ++.... +..++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~-~~~k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVL-VGNKSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHH-hcCCCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence 88887654 433333 2223568899999999974321 111111 1135579999999885
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.30 E-value=2.8e-11 Score=83.61 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCC----CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030193 61 ISFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 61 ~~~~~~d~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
..+.|+|+||-. .....+..++..+|++|||.++.+..+-... ..+.+.... ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 458999999953 2335577788999999999999875443322 333343333 234489999984
No 309
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.29 E-value=1.3e-10 Score=91.58 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=106.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcc----cceEEEEEECCEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI----GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~----~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..++-+.+.++|+.++|||.+++.++++.+.. +..+. .++...+..+...+.+.|.+-. ........- ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 34677899999999999999999999987763 22222 2333334445567778887764 222222211 67999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.++||.+++.+|......+...... ...|+++|++|+|+.+. ....+.++.+++.. -...|++.
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~~ 568 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSKT 568 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccCC
Confidence 99999999999999888877776555 57999999999998653 23466777776652 33566664
Q ss_pred CCCHHHHHHHHHHHh
Q 030193 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l 177 (181)
... .++|.+|..+.
T Consensus 569 ~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 569 LSS-NELFIKLATMA 582 (625)
T ss_pred CCC-chHHHHHHHhh
Confidence 333 78888887654
No 310
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.9e-11 Score=90.84 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=83.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc--CCc--------------c--ccc---Ccccc----eEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL--GEI--------------V--TTI---PTIGF----NVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~--~~~--------------~--~~~---~t~~~----~~~~~~~~~~~~~~~d~~ 69 (181)
.++...+|+-+|.+|||||...|+- +.. . +.. ...++ .+..+++.+..++|.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 4566778999999999999999852 110 0 000 12222 345678899999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
||++|..-..+.+..+|.+++|+|+..- .+.....+.+..+. .++||+=++||.|-.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~ 146 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDRE 146 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccc
Confidence 9999999998888999999999999742 33333445555554 589999999999964
No 311
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.28 E-value=6e-11 Score=86.96 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=74.0
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHh
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAA 137 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~ 137 (181)
.++.+.|++|.|-.+...... .-+|.+++|.-+.--+..+....-++++- -++|+||.|....+ ...
T Consensus 142 aG~DvIIVETVGvGQsev~I~---~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVDIA---NMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchhHHh---hhcceEEEEecCCCCcHHHHHHhhhhhhh---------heeeEeccChhhHHHHHH
Confidence 468899999998655444433 45899999988876666777766665543 39999999954332 122
Q ss_pred HHHhhhCCCc----cCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 138 EITDKLGLHS----LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 138 ~~~~~~~~~~----~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
++...+.... ...+..|++.||+.+|+|++++++.+.+..
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 3333333221 223456799999999999999999998754
No 312
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=1.4e-11 Score=86.94 Aligned_cols=146 Identities=21% Similarity=0.296 Sum_probs=95.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC----cccccCcccceEEEEEECC-EEEEEEEcCCCCCc-----ccccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~-----~~~~~~~~~~~ 85 (181)
.+.||+++|.+|+||||+=..+..+. .....+|+++....+.+-+ ..+++||.+|++.+ .......+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 36799999999999999866666444 2234567777776666544 89999999999743 33456778999
Q ss_pred cEEEEEEECCCcc---cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC--CCcc-CCcceEEEEcc
Q 030193 86 QGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSL-RQRHWYIQSTC 159 (181)
Q Consensus 86 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~S 159 (181)
+++++|||+...+ .+......+...++. .+...+....+|.|+.....-+.+-++.. ...+ +.....++++|
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999997542 222223333333332 25678899999999987544333322111 1111 23446788888
Q ss_pred cCCC
Q 030193 160 ATSG 163 (181)
Q Consensus 160 ~~~~ 163 (181)
..+.
T Consensus 161 iwDe 164 (295)
T KOG3886|consen 161 IWDE 164 (295)
T ss_pred hhhH
Confidence 7764
No 313
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.26 E-value=6.7e-11 Score=84.98 Aligned_cols=149 Identities=17% Similarity=0.062 Sum_probs=95.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccceE-EEEEECCEEEEEEEcCCCC--------Cccccccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV-ETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~~d 86 (181)
-+|.++|-|.+||||++..+.+.... ++.-|+=..+ ....+++.++++.|.||-- +.+ ......+-|+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~-qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGK-QVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCcc-EEEEEeeccc
Confidence 38999999999999999999887632 1111111111 2345678899999999931 222 2334457899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC-----------------------------------------------------
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNE----------------------------------------------------- 113 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----------------------------------------------------- 113 (181)
.+++|.|+..|-+...+.+.-.+-+..
T Consensus 139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~ 218 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATA 218 (358)
T ss_pred EEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcch
Confidence 999999998766554443321111000
Q ss_pred ------CCCC--CCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 114 ------DELR--DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 114 ------~~~~--~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
...+ -+|++.++||+|...- +++.-.+..+ ..+++|+.+++|++++++.+.+.+
T Consensus 219 DdLIdvVegnr~yVp~iyvLNkIdsISi---EELdii~~ip-------havpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 219 DDLIDVVEGNRIYVPCIYVLNKIDSISI---EELDIIYTIP-------HAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhhccCceeeeeeeeecccceeee---eccceeeecc-------ceeecccccccchHHHHHHHhhcc
Confidence 0001 3578888888885433 3333333333 467899999999999999998865
No 314
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.25 E-value=3.7e-11 Score=90.23 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=88.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-----------cCcccceEEEEEE--CC--EEEEEEEcCCCCC------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVEY--KN--ISFTVWDVGGQDK------ 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------~~t~~~~~~~~~~--~~--~~~~~~d~~g~~~------ 73 (181)
--.++|+++|+.|+|||||+|.|++...... .++..+....... .+ .+++++||||-.+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4578999999999999999999998743321 2344444444333 23 6889999999211
Q ss_pred ---------------ccc-----ccc-cc-cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 74 ---------------IRP-----LWR-HY-FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 74 ---------------~~~-----~~~-~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|.. .+. .+ =...|++||.+.++ .+++..++-..+..+. ..+.+|-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 100 011 01 12479999999987 4566666666666665 368899999999988
Q ss_pred CCCCHhHHHhhhCCCccCCcceEEE
Q 030193 132 NAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
...+......... ..+..+++++|
T Consensus 176 T~~El~~~K~~I~-~~i~~~nI~vf 199 (373)
T COG5019 176 TDDELAEFKERIR-EDLEQYNIPVF 199 (373)
T ss_pred CHHHHHHHHHHHH-HHHHHhCCcee
Confidence 7666555554432 22334455555
No 315
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=7.3e-11 Score=88.00 Aligned_cols=157 Identities=20% Similarity=0.168 Sum_probs=97.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC----cccc------cCcccceEEEEE---------ECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE----IVTT------IPTIGFNVETVE---------YKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~------~~t~~~~~~~~~---------~~~~~~~~~d~~g~~~~~ 75 (181)
..+++++++|+.+||||+|.+++..-. |... .-|.+..+..+. .+...+.++|.|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 446899999999999999999996432 1111 113333333222 245788999999997766
Q ss_pred cccccccccccEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhH----HHhhhCCC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAE----ITDKLGLH 146 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~----~~~~~~~~ 146 (181)
.......+-.|+.++|+|+..-..-+..+ -.+-+.+ -...++|+||+|...+. ..++ +++.+...
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 65555556789999999996422111111 1222222 24568888999875431 1222 22222222
Q ss_pred ccCCcceEEEEcccCCC----CCHHHHHHHHHHHhh
Q 030193 147 SLRQRHWYIQSTCATSG----EGLYEGLDWLSNNIA 178 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~----~~i~~~~~~i~~~l~ 178 (181)
.+ ..+.|++++|+..| +++.++.+.+...+-
T Consensus 159 ~f-~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 159 GF-DGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred Cc-CCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 22 13478999999999 778888887777654
No 316
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.23 E-value=2.2e-10 Score=87.91 Aligned_cols=152 Identities=19% Similarity=0.190 Sum_probs=90.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC----Ccc-------------cc-----cCcccceE---EEEEE-----CCEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG----EIV-------------TT-----IPTIGFNV---ETVEY-----KNISFT 64 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~----~~~-------------~~-----~~t~~~~~---~~~~~-----~~~~~~ 64 (181)
.-++-|+|+|+.++|||||+|+|.+. ... +. ..|++..+ ..++. -..+++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45789999999999999999999887 221 11 12444433 22322 237899
Q ss_pred EEEcCCCC--------Cccc------c---------------cccccc-cccEEEEEE-ECC----CcccHHHHHHHHHH
Q 030193 65 VWDVGGQD--------KIRP------L---------------WRHYFQ-NTQGLIFVV-DSN----DRDRVVEARDELHR 109 (181)
Q Consensus 65 ~~d~~g~~--------~~~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~ 109 (181)
++|++|.. +-.. - ....+. .++..|+|. |.+ .++.+....+.+.+
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999921 1111 0 222334 789999988 764 23445666666666
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC--CCCHHHHHHHHH
Q 030193 110 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS--GEGLYEGLDWLS 174 (181)
Q Consensus 110 ~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~i~ 174 (181)
.++. .++|+++|+||.|-.... ..++...+. .+.+++++.+|+.+ ...+..+++.+.
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 6665 589999999999943222 232322221 12234556666654 444555555443
No 317
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=7.8e-11 Score=86.07 Aligned_cols=157 Identities=23% Similarity=0.222 Sum_probs=99.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC-------C---cc--cccC-------cccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG-------E---IV--TTIP-------TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~-------~---~~--~~~~-------t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
.-.+||+.+|+.+.|||||..++..- . +. +.-| |+......++-.+..+-..|.|||.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 34679999999999999998887531 1 11 1112 3333334455567888899999999998
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHH--HHHHhcCCCCCCC-eEEEEEeCCCCCCCCCHhH-----HHhhhCCCc
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDE--LHRMLNEDELRDA-VLLVFANKQDLPNAMNAAE-----ITDKLGLHS 147 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~--~~~~~~~~~~~~~-piivv~nK~D~~~~~~~~~-----~~~~~~~~~ 147 (181)
........+.|+.|+|+.+++-.- .+..+. +.+. -++ .+++++||+|+++..+..+ ++..+..-.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarq------vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ------VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhh------cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence 877766678999999999986321 122222 2222 244 6889999999998554332 233333333
Q ss_pred cCCcceEEEEcccCCC-CC-------HHHHHHHHHHHhh
Q 030193 148 LRQRHWYIQSTCATSG-EG-------LYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~-~~-------i~~~~~~i~~~l~ 178 (181)
+..-+.|++.-|+..- +| +.+|++.+..++.
T Consensus 163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 4445678877776642 22 5666666655543
No 318
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.19 E-value=2.6e-10 Score=78.82 Aligned_cols=143 Identities=22% Similarity=0.165 Sum_probs=83.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC---Ccc----cc-cCc----------ccceEEEEE----------------------
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG---EIV----TT-IPT----------IGFNVETVE---------------------- 57 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~---~~~----~~-~~t----------~~~~~~~~~---------------------- 57 (181)
+.|.|.|++|||||+|+.+++.. ++. .. ..| .+.....++
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 79999999999999999887542 110 00 000 111111111
Q ss_pred ECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCC--CCeEEEEEeCCCCCCCCC
Q 030193 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~~~~ 135 (181)
..+..+-+++..|. ....-++.-..+.-++|+|++.-+.. -++..+ ...-++|+||.|+.+..+
T Consensus 94 ~~~~Dll~iEs~GN---L~~~~sp~L~d~~~v~VidvteGe~~-----------P~K~gP~i~~aDllVInK~DLa~~v~ 159 (202)
T COG0378 94 FPDLDLLFIESVGN---LVCPFSPDLGDHLRVVVIDVTEGEDI-----------PRKGGPGIFKADLLVINKTDLAPYVG 159 (202)
T ss_pred CCcCCEEEEecCcc---eecccCcchhhceEEEEEECCCCCCC-----------cccCCCceeEeeEEEEehHHhHHHhC
Confidence 12246677777772 22222232345589999999753210 010001 125689999999987544
Q ss_pred H--hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 136 A--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 136 ~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
. +...+.... . ..+.+++++|.++|.|++++++++....
T Consensus 160 ~dlevm~~da~~--~-np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAKE--V-NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHHH--h-CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3 322221111 1 1234799999999999999999998754
No 319
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3.8e-10 Score=85.35 Aligned_cols=137 Identities=15% Similarity=0.253 Sum_probs=86.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc--------c--CcccceEEEEEECC----EEEEEEEcCCCCC--------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--------I--PTIGFNVETVEYKN----ISFTVWDVGGQDK-------- 73 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------~--~t~~~~~~~~~~~~----~~~~~~d~~g~~~-------- 73 (181)
-.++++++|++|.|||||||.|+...+... . .|..+......... .++++.||||-.+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999988754422 1 13444444444432 6889999999110
Q ss_pred ----------cc-------cccccccc--cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 74 ----------IR-------PLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 74 ----------~~-------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|. ......+. ..|+.+|.+.+. .+++...+-.+++.+. ..+.+|-|+.|.|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 00 00111122 589999999986 4456666666666665 378999999999988765
Q ss_pred CHhHHHhhhCCCccCCcceEEEEc
Q 030193 135 NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+...+..... ..+...++++|..
T Consensus 175 El~~~K~~I~-~~i~~~nI~vf~f 197 (366)
T KOG2655|consen 175 ELNQFKKRIR-QDIEEHNIKVFDF 197 (366)
T ss_pred HHHHHHHHHH-HHHHHcCcceecC
Confidence 5555444332 2233344444433
No 320
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.8e-11 Score=96.63 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=80.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC----------------cccceE---------EEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----------------TIGFNV---------ETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------------t~~~~~---------~~~~~~~~~~~~~d~~ 69 (181)
....+++++|+-++|||+|+..|..+..++-.+ ..+..+ ...+.+.+-++++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 567899999999999999999998765432111 011111 1112245789999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
||-.|.......++.+|++++|+|+.+.-.+ +..+.+...++ .+.|+++|+||.|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVml-ntEr~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVML-NTERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCcee-eHHHHHHHHHh----ccCcEEEEEehhHHH
Confidence 9999999999999999999999999754332 22232333333 589999999999963
No 321
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=4.7e-10 Score=79.94 Aligned_cols=159 Identities=23% Similarity=0.291 Sum_probs=102.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc----cCcccceEEEEEECCEEEEEEEcCCCCCcccc---cccccccccEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL---WRHYFQNTQGLI 89 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~---~~~~~~~~d~~i 89 (181)
+.+|+++|...+||||+.....++..+.. ..|.....-.+....+.+++||.||+-.+-.. ....++++.+++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 47899999999999999998888765421 11222222223335678999999998654332 456778999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCC----HhHHHh----hhCCCccCCcceEEEEcc
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN----AAEITD----KLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~S 159 (181)
||+|+. +.+.+....+...+.+.. .+++.+=+.+.|.|...+.- ...+.+ .+......+-.+.+.-||
T Consensus 107 fvIDaQ--ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 107 FVIDAQ--DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEech--HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999994 445554444444433322 25788899999999865421 111211 222222333445677788
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
-.+ -.+-|+|.+++++|.
T Consensus 185 IyD-HSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 185 IYD-HSIFEAFSKVVQKLI 202 (347)
T ss_pred ecc-hHHHHHHHHHHHHHh
Confidence 777 458888888888764
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.13 E-value=1.4e-09 Score=80.68 Aligned_cols=57 Identities=28% Similarity=0.294 Sum_probs=39.8
Q ss_pred CCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 118 DAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 118 ~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
..+-++|+||+|+.+.. ..++....+... ....+++++|+++|+|++++++||.+..
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46779999999997532 233333322111 1235799999999999999999998743
No 323
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.09 E-value=7.8e-10 Score=89.38 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=72.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc----cCcccceEEEEEECCEEEEEEEcCCCCCcc-------cc---cccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PL---WRHY 81 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~---~~~~ 81 (181)
..++|+++|.+|+||||++|++++...... ..|+..........+..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 456899999999999999999999864321 224443333344567899999999954321 11 1123
Q ss_pred cc--cccEEEEEEECCCcccH-H--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 82 FQ--NTQGLIFVVDSNDRDRV-V--EARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 ~~--~~d~~i~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+. .+|++|||..+...... + ...+.+...+...- =..+|||.|+.|...
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence 23 47999999887533221 1 22333444444211 146899999999875
No 324
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.09 E-value=5.2e-09 Score=76.01 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=68.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc-c-c-----ccCcc-------c-c-----------------------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI-V-T-----TIPTI-------G-F----------------------------- 51 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~-~-----~~~t~-------~-~----------------------------- 51 (181)
.-+.++++|+.|+||||+++++.+..+ + . ..|+. . .
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 566899999999999999999988642 1 0 01100 0 0
Q ss_pred --------eEEEEE--EC-CEEEEEEEcCCCCC-------------ccccccccccc-ccEEEEEEECCCcccHHHHHHH
Q 030193 52 --------NVETVE--YK-NISFTVWDVGGQDK-------------IRPLWRHYFQN-TQGLIFVVDSNDRDRVVEARDE 106 (181)
Q Consensus 52 --------~~~~~~--~~-~~~~~~~d~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~ 106 (181)
+...++ .. ...++++|+||-.. .+.+...|+++ .+.+++|+|+...-.-+.. ..
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ 183 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LK 183 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HH
Confidence 000111 11 25799999999532 12235566664 5689999998532111111 12
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 107 LHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 107 ~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.+.+.. .+.++++|+||.|..++
T Consensus 184 ia~~ld~---~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVDP---QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHH---cCCcEEEEEECCCCCCc
Confidence 3333332 46899999999998764
No 325
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.2e-09 Score=82.36 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=82.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc----ccCcccceEEEEEE------------------------------
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY------------------------------ 58 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~~------------------------------ 58 (181)
.-+.+.-|+++|+...||||||+.|+..+++. ..||++.-..-+.+
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 33678899999999999999999999988763 34555543333221
Q ss_pred --------C---CEEEEEEEcCCCCC-----------cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCC
Q 030193 59 --------K---NISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 59 --------~---~~~~~~~d~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (181)
. --.++++||||--. |.....=+...+|.++++||+...+-=......+.... +
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk----G 209 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK----G 209 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh----C
Confidence 0 03589999999322 23333444568999999999975432233333333332 2
Q ss_pred CCCeEEEEEeCCCCCCCCCHhHHHh
Q 030193 117 RDAVLLVFANKQDLPNAMNAAEITD 141 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~~~~~~~~~ 141 (181)
..-.+-+|+||.|.++.+.+..+..
T Consensus 210 ~EdkiRVVLNKADqVdtqqLmRVyG 234 (532)
T KOG1954|consen 210 HEDKIRVVLNKADQVDTQQLMRVYG 234 (532)
T ss_pred CcceeEEEeccccccCHHHHHHHHH
Confidence 4567889999999887655444433
No 326
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.05 E-value=2.2e-09 Score=81.21 Aligned_cols=157 Identities=16% Similarity=0.074 Sum_probs=99.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccc-c----------------CcccceEEE--EE-----------------
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I----------------PTIGFNVET--VE----------------- 57 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~----------------~t~~~~~~~--~~----------------- 57 (181)
....+.+++.|+.++|||||+-+|.-....+. . .+.++.+.- ++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 35678999999999999999999976554321 0 122222211 11
Q ss_pred ----ECCEEEEEEEcCCCCCcccccc--cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 58 ----YKNISFTVWDVGGQDKIRPLWR--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ----~~~~~~~~~d~~g~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
-.+--+.+.|+.||+.|....- ..-+..|..++++.+++-. +...+.-..+.. ....|++++.||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~--~~~tkEHLgi~~---a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV--TKMTKEHLGIAL---AMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc--chhhhHhhhhhh---hhcCCEEEEEEecccC
Confidence 1234578999999999977643 4446799999999997532 333222222221 1479999999999998
Q ss_pred CCCCHhH----HHhhhC---C-----------------CccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 132 NAMNAAE----ITDKLG---L-----------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 132 ~~~~~~~----~~~~~~---~-----------------~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
+....+. +...+. . -.....-.|+|.+|+.+|+|++-+.+.+..
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 7543222 222111 0 001112478999999999999876665543
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.03 E-value=5.6e-10 Score=76.28 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=62.8
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcce
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
++..+.++.+++|++++|+|+.++..... ..+...+.. .++|+++|+||+|+.+.....++.. + ....+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~-~----~~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKS-I----KESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHH-H----HHhCCC
Confidence 34556777788999999999976532211 223333322 3689999999999864322222211 1 111234
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+++.+|++++.|++++++.+.+.+.
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHh
Confidence 6889999999999999999988754
No 328
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.02 E-value=5.5e-10 Score=82.68 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=95.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc---cccCcccceEEEEEE-CCEEEEEEEcCCC---------CCcccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEY-KNISFTVWDVGGQ---------DKIRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~d~~g~---------~~~~~~~~~~ 81 (181)
....-|.++|..|+|||||+++|++.... .-..|.+........ .+..+-+.||-|- ..|++.....
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 44567999999999999999999965432 123344444434433 3567888999982 2344444444
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe----EEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
..+|+++=|.|+++|.-- .........++....+..| ++=|=||.|...... ..++.+ .+.
T Consensus 256 -aeadlllHvvDiShP~ae-~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------e~E~n~--~v~ 320 (410)
T KOG0410|consen 256 -AEADLLLHVVDISHPNAE-EQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------EEEKNL--DVG 320 (410)
T ss_pred -hhcceEEEEeecCCccHH-HHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----------ccccCC--ccc
Confidence 569999999999988643 3333333444443333333 455667777543211 111111 346
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+|+.+|.|++++.+.+-.++..
T Consensus 321 isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccCccHHHHHHHHHHHhhh
Confidence 8999999999999998877653
No 329
>PRK12289 GTPase RsgA; Reviewed
Probab=99.00 E-value=1.6e-09 Score=82.93 Aligned_cols=90 Identities=19% Similarity=0.188 Sum_probs=63.1
Q ss_pred cccccccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
....+.++|.+++|+|+.++. ....+..++... .. .++|+++|+||+|+.+....+.+...+ +..+++++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEE
Confidence 334568999999999998765 333445554433 22 479999999999997543333333322 23455788
Q ss_pred EcccCCCCCHHHHHHHHHHH
Q 030193 157 STCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~ 176 (181)
.+|++++.|++++++.+...
T Consensus 154 ~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEcCCCCCHHHHhhhhccc
Confidence 99999999999999988653
No 330
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.97 E-value=1.8e-09 Score=74.83 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=38.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc--cCcccceEEEEEECCEEEEEEEcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g 70 (181)
...++++++|.||+|||||+|++.+...... .|.+......+.. +..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 4458999999999999999999999775433 3322122222222 24689999998
No 331
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.97 E-value=1.9e-09 Score=82.46 Aligned_cols=78 Identities=23% Similarity=0.300 Sum_probs=53.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECC-----------------EEEEEEEcCCCCCc---
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKI--- 74 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~--- 74 (181)
++|+++|.||+|||||.|++++.... .+.| |.+.....+...+ ..+++.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987732 2222 4455444444333 35999999994221
Q ss_pred -cc---ccccccccccEEEEEEECC
Q 030193 75 -RP---LWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 75 -~~---~~~~~~~~~d~~i~v~d~~ 95 (181)
.. ..-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 1223357899999999984
No 332
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.96 E-value=1.2e-09 Score=77.15 Aligned_cols=98 Identities=18% Similarity=0.080 Sum_probs=62.7
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhh---CCCccC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKL---GLHSLR 149 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~---~~~~~~ 149 (181)
++..+..+++++|++++|+|+.++.. .....+.. . ..+.|+++|+||+|+.+..... ...... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~--~~~~~l~~---~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG--SLIPRLRL---F--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC--ccchhHHH---h--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 57778889999999999999976531 11111111 1 1468999999999997543322 221111 000000
Q ss_pred CcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
-...+++++||+++.|++++++.+.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 00125789999999999999999988653
No 333
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.95 E-value=1.3e-09 Score=80.60 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=52.1
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECC-----------------EEEEEEEcCCCCCc----c
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKI----R 75 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~----~ 75 (181)
|+++|.||+|||||.|++++.... .. ..|.+.....+...+ ..++++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999997753 22 235455554444443 25999999994221 1
Q ss_pred c---ccccccccccEEEEEEECC
Q 030193 76 P---LWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 76 ~---~~~~~~~~~d~~i~v~d~~ 95 (181)
. ..-..++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 1223346899999999874
No 334
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.6e-08 Score=76.71 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=55.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEE------------------CCEEEEEEEcCCC----
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY------------------KNISFTVWDVGGQ---- 71 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~------------------~~~~~~~~d~~g~---- 71 (181)
.++++|+|-||+|||||.|+++..... .+.| |++.+...+.. -...++++|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999887632 3333 55544433222 1257899999982
Q ss_pred ---CCcccccccccccccEEEEEEECC
Q 030193 72 ---DKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 72 ---~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+..-+..-.-++.+|+++-|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 233333444568899999999975
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.93 E-value=4.5e-09 Score=71.89 Aligned_cols=54 Identities=19% Similarity=0.334 Sum_probs=37.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccccCcccce--EEEEEECCEEEEEEEcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~d~~g 70 (181)
..++|+++|.+|+|||||+|++.+.......++.+.. ...+.. +..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-CCCEEEEECcC
Confidence 4688999999999999999999987754333322211 122222 23478999998
No 336
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=5.4e-09 Score=79.01 Aligned_cols=150 Identities=23% Similarity=0.236 Sum_probs=95.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc-----------------cCc-------ccceE--EEEEE-----------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------------IPT-------IGFNV--ETVEY----------- 58 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~t-------~~~~~--~~~~~----------- 58 (181)
-.++++++|...+|||||+--|..++.... ..| .+++- .-+++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 356999999999999999999977654311 001 11110 00111
Q ss_pred -CCEEEEEEEcCCCCCccccccccccc--ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030193 59 -KNISFTVWDVGGQDKIRPLWRHYFQN--TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 59 -~~~~~~~~d~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..--++++|.+||.+|.....+.+.. .|..++|+.+..-..+.. ++.+--... -++|..++.+|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 12347899999999998887666654 689999999975443322 122222222 3799999999999998654
Q ss_pred HhHHHh----hhCCC---------------------ccCCcceEEEEcccCCCCCHHHHH
Q 030193 136 AAEITD----KLGLH---------------------SLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 136 ~~~~~~----~~~~~---------------------~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
.+...+ .+... ...+.-.|+|.+|+.+|+|++-+-
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 333222 22111 111235789999999999987554
No 337
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.90 E-value=1.3e-09 Score=79.13 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=95.9
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc--ccc----CcccceEEEEEECCEEEEEEEcCCC----------CCccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTI----PTIGFNVETVEYKNISFTVWDVGGQ----------DKIRP 76 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~----~t~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~ 76 (181)
++++++.+.+.|.+|+|||||+|.++..... ... .|..++.+.+ +-.+.+.|.||. .++..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhH
Confidence 3578899999999999999999999887643 122 2333333333 457888999992 22333
Q ss_pred ccccccccc---cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhC--C
Q 030193 77 LWRHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLG--L 145 (181)
Q Consensus 77 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------~~~~~~~~~--~ 145 (181)
....|+.+- --+++.+|++. +++..+....+++.+ .++|..+|.||||...... ...+...+. .
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 444444332 24555666643 345555556666666 5799999999999865321 111111010 0
Q ss_pred CccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 146 ~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
+.......|++-+|+.++.|+++++-.+.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 111122345566999999999988766554
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.89 E-value=5.9e-09 Score=70.05 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=37.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc--cCcccceEEEEEECCEEEEEEEcCCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
+++++|.+|+|||||+|++.+...... .+..+.....+...+ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998876432 222222233344433 6899999994
No 339
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=5.9e-09 Score=84.65 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=79.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCC------------cccccC---cccce----EEEEEECCEEEEEEEcCCCCCc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IVTTIP---TIGFN----VETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~~~---t~~~~----~~~~~~~~~~~~~~d~~g~~~~ 74 (181)
.+...+++++.+.++|||||+..|+.-. |.+..+ +.++. ......+++.++++|+|||-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 3567789999999999999999996422 112111 22222 2223347899999999999999
Q ss_pred ccccccccccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 75 RPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
........+-+|++++++|+.. .+++.-+++.|.+ +..+++|+||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhh
Confidence 9999999899999999999964 3344444444433 567899999999
No 340
>PRK00098 GTPase RsgA; Reviewed
Probab=98.87 E-value=6.5e-09 Score=78.31 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=59.6
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEccc
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
..++|.+++|+|+.++.......+.|...+.. .++|+++|+||+|+.+.. ..+++... ++..+++++++|+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLAL-----YRAIGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHH-----HHHCCCeEEEEeC
Confidence 48899999999998776655554444433433 478999999999996321 11122222 2223457899999
Q ss_pred CCCCCHHHHHHHHHH
Q 030193 161 TSGEGLYEGLDWLSN 175 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~ 175 (181)
+++.|++++++.+..
T Consensus 150 ~~g~gi~~L~~~l~g 164 (298)
T PRK00098 150 KEGEGLDELKPLLAG 164 (298)
T ss_pred CCCccHHHHHhhccC
Confidence 999999999987753
No 341
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=1.3e-08 Score=72.61 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=74.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc---------c-cCcccceEEE--EEECC--EEEEEEEcCCCCCc-------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT---------T-IPTIGFNVET--VEYKN--ISFTVWDVGGQDKI------- 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------~-~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~------- 74 (181)
=.++|+|+|.+|.||||++|.+..-...+ . ..|+.+.... +..++ .+++++||||-.+.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 37899999999999999999997654321 1 1133333322 33344 57889999992111
Q ss_pred -----------c--------cccccccc--cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 75 -----------R--------PLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 75 -----------~--------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
. ..+...+. ..+.++|.+.++ .+++..++-.+++-+.+ -+.++-|+.|+|...-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh----hheeeeeEeecccccH
Confidence 0 01111111 367888888886 34555555445444442 4788999999997665
Q ss_pred CCHhHHHh
Q 030193 134 MNAAEITD 141 (181)
Q Consensus 134 ~~~~~~~~ 141 (181)
++-.++++
T Consensus 200 eEr~~Fkq 207 (336)
T KOG1547|consen 200 EERSAFKQ 207 (336)
T ss_pred HHHHHHHH
Confidence 44444433
No 342
>PRK12288 GTPase RsgA; Reviewed
Probab=98.86 E-value=1.4e-08 Score=77.84 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=64.1
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
..++|.+++|+++....++..+..|+... .. .++|+++|+||+|+.+....+...... ..++..+++++++|++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~--~~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQL--DIYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHH--HHHHhCCCeEEEEeCC
Confidence 35699999999998777888888876543 22 478999999999997643222221111 1123345689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030193 162 SGEGLYEGLDWLSNN 176 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~ 176 (181)
++.|++++++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988764
No 343
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.85 E-value=1.3e-08 Score=76.25 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=62.9
Q ss_pred ccccccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...+.++|.+++|+|+.++. ++....+|+..... .++|+++|+||+|+.+.......... +...+++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~-----~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVE-----ALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHH-----HHhCCCeEEE
Confidence 34568899999999998887 77777776554432 47899999999999754211111111 1123458899
Q ss_pred cccCCCCCHHHHHHHHHH
Q 030193 158 TCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~ 175 (181)
+|++++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999987764
No 344
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.1e-08 Score=74.87 Aligned_cols=139 Identities=22% Similarity=0.242 Sum_probs=90.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC-------C---cc--cccC-----cccceEEEEEE--CCEEEEEEEcCCCCCcccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG-------E---IV--TTIP-----TIGFNVETVEY--KNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~-------~---~~--~~~~-----t~~~~~~~~~~--~~~~~~~~d~~g~~~~~~~ 77 (181)
.+||+-+|+...|||||..++..- . +. +..| .+.++...+++ .....--.|.|||.+|-..
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKN 133 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKN 133 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHH
Confidence 568999999999999998887531 1 11 1111 22233344444 4566777899999999888
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHH--HHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-----HHhhhCCCccCC
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDEL--HRMLNEDELRDAVLLVFANKQDLPNAMNAAE-----ITDKLGLHSLRQ 150 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~--~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-----~~~~~~~~~~~~ 150 (181)
..-...+.|+.|+|+.+++-. +.+.++.+ .+.+. -..+++++||.|++++.+..+ ++..+..-.+..
T Consensus 134 MItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVG-----V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 134 MITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVG-----VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred hhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcC-----CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 777778899999999998632 23333332 23222 256899999999996543322 233333444555
Q ss_pred cceEEEEcccC
Q 030193 151 RHWYIQSTCAT 161 (181)
Q Consensus 151 ~~~~~~~~S~~ 161 (181)
-+.|++--||.
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 67788877754
No 345
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.1e-09 Score=79.16 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=101.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC------cccc-------------------eEEE----------EE--
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP------TIGF-------------------NVET----------VE-- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------t~~~-------------------~~~~----------~~-- 57 (181)
+..++|+-+|+.-.||||++.++.+-....-.. |+.. .+.. .+
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 678999999999999999999996632110000 0000 0000 00
Q ss_pred -----ECC-EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 58 -----YKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 -----~~~-~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+- ..+.+.|.|||+-..+.+-....-.|++++++..++.+...+..+.+...--- .=..++++.||+|+.
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli 192 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLI 192 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhh
Confidence 011 35789999999877666555545678899999987655444444444332111 125789999999998
Q ss_pred CCCCHhH----HHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 132 NAMNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 132 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.+....+ +.+...- -.-.+.|++++||.-+.|++-+.++|++++.
T Consensus 193 ~e~~A~eq~e~I~kFi~~--t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 193 KESQALEQHEQIQKFIQG--TVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hHHHHHHHHHHHHHHHhc--cccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 7543222 2222111 1224678999999999999999999998864
No 346
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.4e-08 Score=80.50 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=90.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
.+-++|+||||+||||||..|+....-.....+.-.++-+.++..++++++.|.+ ...+. ...+-+|++++++|.+
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~mi-DvaKIaDLVlLlIdgn- 144 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQMI-DVAKIADLVLLLIDGN- 144 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHHH-hHHHhhheeEEEeccc-
Confidence 4567899999999999999998876544444444445667778899999999932 33333 3346799999999995
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCC--cceEEEEcccC
Q 030193 97 RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQ--RHWYIQSTCAT 161 (181)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~S~~ 161 (181)
-+|+-....++.++..+.. +.++-|+|..|+.... .+....++++.++-.. ++..+|..|-.
T Consensus 145 -fGfEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 145 -FGFEMETMEFLNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred -cCceehHHHHHHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 3444444456666665432 4478899999997643 4445555444332211 34455556643
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.80 E-value=2e-08 Score=68.71 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=59.4
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.+..+|++++|+|+.++.. .....+.+.+... ..++|+++|+||+|+.++....++...+... ..+.++.+|+
T Consensus 5 ~l~~aD~il~VvD~~~p~~--~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMG--TRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCcc--ccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 3478999999999987532 1123333333322 2358999999999997543333333333221 1223578999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 030193 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l 177 (181)
+++.|++++++.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999998754
No 348
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.80 E-value=1e-08 Score=80.74 Aligned_cols=154 Identities=18% Similarity=0.275 Sum_probs=107.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcc--cceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI--GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~--~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
..|++|+|..++|||+|+.+++...+.. ..|.- .-.++.++...+.+.+.|.+|+..- .|....|.+|+||.
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavIfvf~ 104 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVVFVFS 104 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccceEEEEE
Confidence 5799999999999999999999888763 33322 2234455667788889998885333 24467899999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+.+..+|+.+...............+|.++++++.=.... ...+.-...+... .....+|++++..|.++...|
T Consensus 105 ~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~---~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 105 VEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQ---MKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred eccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHh---cCccceeecchhhhhhHHHHH
Confidence 9999999988877777665444456888999887543211 1111111111111 112358899999999999999
Q ss_pred HHHHHHhh
Q 030193 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~l~ 178 (181)
..+..++.
T Consensus 182 ~~~~~k~i 189 (749)
T KOG0705|consen 182 QEVAQKIV 189 (749)
T ss_pred HHHHHHHH
Confidence 99888764
No 349
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.78 E-value=6.3e-09 Score=80.30 Aligned_cols=98 Identities=23% Similarity=0.267 Sum_probs=64.6
Q ss_pred CCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccC
Q 030193 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLR 149 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~ 149 (181)
+++|......+...++++++|+|+.+... .....+.+.+ .+.|+++|+||+|+.... ..+++..... ..++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 55788888888889999999999976431 1222333333 257999999999997543 2222222110 0111
Q ss_pred Ccce---EEEEcccCCCCCHHHHHHHHHHH
Q 030193 150 QRHW---YIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 150 ~~~~---~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
..++ .++.+||+++.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1222 37889999999999999999764
No 350
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=2.6e-08 Score=67.98 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=53.9
Q ss_pred cEEEEEEECCCcccHHHHHHHHH-HHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
|++++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.+.....++...+... ...+++.+|++++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 68999999987654332 2232 23332 468999999999996543222322222111 12357889999999
Q ss_pred CHHHHHHHHHHH
Q 030193 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 ~i~~~~~~i~~~ 176 (181)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
No 351
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.7e-07 Score=75.61 Aligned_cols=118 Identities=15% Similarity=0.327 Sum_probs=75.2
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccc------------------------------------
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGF------------------------------------ 51 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~------------------------------------ 51 (181)
.+...++..||++.|..++||||+||+++.+... ...|++.+
T Consensus 102 ~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~ 181 (749)
T KOG0448|consen 102 DEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALK 181 (749)
T ss_pred HHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcC
Confidence 3445578999999999999999999999765421 11111100
Q ss_pred --------eEEEEEECC-------EEEEEEEcCCCC---CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcC
Q 030193 52 --------NVETVEYKN-------ISFTVWDVGGQD---KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113 (181)
Q Consensus 52 --------~~~~~~~~~-------~~~~~~d~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 113 (181)
...++-+++ -.+.++|.||-+ ....-......++|+++||.++.+ .+......+.....+
T Consensus 182 ~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 182 PDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE 259 (749)
T ss_pred cccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc
Confidence 000111111 257899999943 333345677789999999999954 455555555554443
Q ss_pred CCCCCCeEEEEEeCCCCCC
Q 030193 114 DELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 114 ~~~~~~piivv~nK~D~~~ 132 (181)
.++.+.++-||.|...
T Consensus 260 ---~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 260 ---EKPNIFILNNKWDASA 275 (749)
T ss_pred ---cCCcEEEEechhhhhc
Confidence 2566777778889764
No 352
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.71 E-value=1.1e-07 Score=68.88 Aligned_cols=84 Identities=32% Similarity=0.545 Sum_probs=61.4
Q ss_pred cccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc----------cHHHHHHHHHHHhcCCCCC
Q 030193 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~ 117 (181)
|.++..+++....++|+.+|++|+.+-+..|...+.+.-++|||+..++.. .++.....+..+-...-+.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 456666777888899999999999999999999999999999999876421 2222222222222222224
Q ss_pred CCeEEEEEeCCCCC
Q 030193 118 DAVLLVFANKQDLP 131 (181)
Q Consensus 118 ~~piivv~nK~D~~ 131 (181)
.+.+|+++||-|+.
T Consensus 269 tisvIlFLNKqDll 282 (379)
T KOG0099|consen 269 TISVILFLNKQDLL 282 (379)
T ss_pred hhheeEEecHHHHH
Confidence 68999999999985
No 353
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.70 E-value=5.9e-08 Score=66.22 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=39.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEE-EEEECCEEEEEEEcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g 70 (181)
....+++++|.+|+||||++|++.+.......++.+.... .+...+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 3567899999999999999999998765444444443321 1111234799999998
No 354
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.70 E-value=2.9e-08 Score=70.04 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=36.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc----------cccCcccceEEEEEECCEEEEEEEcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV----------TTIPTIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~d~~g 70 (181)
...+++++|.+|+|||||+|+|.+.... +..|.+......+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 4578999999999999999999875421 22232222223333332 579999998
No 355
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.70 E-value=5e-08 Score=73.19 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=39.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCccc--ceEEEEEECCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~d~~g~ 71 (181)
...++++++|.||+|||||+|++.+.......+..+ .....+.. +..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCc
Confidence 456899999999999999999999987543322222 11222332 245889999995
No 356
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.70 E-value=6e-08 Score=73.57 Aligned_cols=149 Identities=20% Similarity=0.170 Sum_probs=90.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-------------------cCcccceEEEEEE-------------------
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-------------------IPTIGFNVETVEY------------------- 58 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~t~~~~~~~~~~------------------- 58 (181)
.++|+++|...+|||||+-.|.+.+.... ..+.+.++--++.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 46999999999999999988876443210 0111111111111
Q ss_pred ----CCEEEEEEEcCCCCCcccccc--cccccccEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 59 ----KNISFTVWDVGGQDKIRPLWR--HYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 59 ----~~~~~~~~d~~g~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.---++++|.+||+.|....- ..-+-.|.-++++-++- ..-... +.+--.+. -.+|+.+|.||+|++
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa--GIiGmTKEHLgLALa----L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA--GIIGMTKEHLGLALA----LHVPVFVVVTKIDMC 286 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc--cceeccHHhhhhhhh----hcCcEEEEEEeeccC
Confidence 113478999999999987643 33345788888887742 111111 11211122 379999999999998
Q ss_pred CCCCHhHHH----hhhCCCcc---------------------CCcceEEEEcccCCCCCHHHHHH
Q 030193 132 NAMNAAEIT----DKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 132 ~~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
....+++-. +.+..+.. .++-+|+|.+|..+|.|++-+..
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 865444432 22222111 12457899999999999876544
No 357
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=4.4e-09 Score=80.54 Aligned_cols=125 Identities=20% Similarity=0.145 Sum_probs=87.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--------cccc---------cC----cccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------IVTT---------IP----TIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--------~~~~---------~~----t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
.+-.+|+++.+..+||||...+++.-. ..+. .. |....-..+++++++++++|||||-+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 456689999999999999999986311 1110 01 22223345788999999999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG 144 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~ 144 (181)
|+-...+.++-.|+++.|||++..-. .....+|..-- ..++|-+.++||+|..... ..+.++..++
T Consensus 115 f~leverclrvldgavav~dasagve-~qtltvwrqad----k~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVE-AQTLTVWRQAD----KFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcc-cceeeeehhcc----ccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 99999999999999999999974221 12223443322 2589999999999986532 3444444444
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.69 E-value=5.4e-08 Score=72.58 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=38.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc--cCcccceEEEEEECCEEEEEEEcCCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
..++++++|.||+|||||+|++.+...... .|.+......+... -.+.++||||-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 468999999999999999999998764422 23221222233332 35799999996
No 359
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=3.2e-08 Score=72.13 Aligned_cols=118 Identities=17% Similarity=0.258 Sum_probs=80.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccC-----cccceEEEEEEC--C--EEEEEEEcCCC-------CCccc----
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYK--N--ISFTVWDVGGQ-------DKIRP---- 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----t~~~~~~~~~~~--~--~~~~~~d~~g~-------~~~~~---- 76 (181)
.++|+.+|..|.||||||+.|++..+.+... +.......++.. + .++++.||.|- +.|..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 6899999999999999999999988764332 333333333332 2 57899999982 11111
Q ss_pred ---cccccc---------------ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 030193 77 ---LWRHYF---------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138 (181)
Q Consensus 77 ---~~~~~~---------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~ 138 (181)
....|+ ...++.+|.+.++ .+++...+....+.+. .++.||-|+.|.|.....++..
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~eL~~ 196 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTISKEELKR 196 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHHHHHH
Confidence 111111 2468889999887 5677777777777666 3688999999999876655444
Q ss_pred H
Q 030193 139 I 139 (181)
Q Consensus 139 ~ 139 (181)
+
T Consensus 197 F 197 (406)
T KOG3859|consen 197 F 197 (406)
T ss_pred H
Confidence 3
No 360
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.69 E-value=5.6e-08 Score=67.42 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=39.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc--cCcccceEEEEEECCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
...++++++|.+|+|||||+|++.+..+... .+........+... ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4557999999999999999999998776432 22222222223332 56889999993
No 361
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.1e-08 Score=76.36 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=100.4
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCC-----------------------c-----c------cccCcccceEEEEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE-----------------------I-----V------TTIPTIGFNVETVEY 58 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~-----------------------~-----~------~~~~t~~~~~~~~~~ 58 (181)
++...+++.++|...+||||+...+.... + . ....|.+.....++-
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 34678999999999999999987774310 0 0 011244455556677
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC---cccHHHH-----HHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRVVEA-----RDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~-----~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
...+++++|+|||..|.........++|+.++|+.+-. ...|+.- ...+.+.. .-...|+++||+|.
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-----gv~~lVv~vNKMdd 229 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-----GVKHLIVLINKMDD 229 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-----ccceEEEEEEeccC
Confidence 78899999999999998887777788999999998832 1122211 11222222 23578999999998
Q ss_pred CCCC----CHhHHHh----hhCCCccC-CcceEEEEcccCCCCCHHHHHH
Q 030193 131 PNAM----NAAEITD----KLGLHSLR-QRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 131 ~~~~----~~~~~~~----~~~~~~~~-~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+.-. ..++... .+....+. .....++++|..+|.++++..+
T Consensus 230 PtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 230 PTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 6421 2222222 22211222 2356799999999999987654
No 362
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.67 E-value=6.2e-08 Score=73.66 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=39.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc--ccC--cccceEEEEEECCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
...++++|+|-||+||||+||+|.+..... ..| |.+......+ ..+.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCc
Confidence 345889999999999999999999988653 344 3333333332 33899999994
No 363
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.62 E-value=4e-08 Score=69.90 Aligned_cols=132 Identities=26% Similarity=0.401 Sum_probs=84.3
Q ss_pred CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc----------cHHHHHHHHHHHhcCCCC
Q 030193 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~ 116 (181)
||+++..+.++.....+++.|++|+...+..|.+.+.+.-.++|++.++..+ .++.....+.-++.-.-.
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 5677777778888899999999999888899999999888888877765432 222222233333333333
Q ss_pred CCCeEEEEEeCCCCCCCCC-----------------HhHHHhhhCCCcc-------CCcceEEEEcccCCCCCHHHHHHH
Q 030193 117 RDAVLLVFANKQDLPNAMN-----------------AAEITDKLGLHSL-------RQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~~~-----------------~~~~~~~~~~~~~-------~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
.+.++|+++||.|+.++.. ..+..+++-+..+ .+....- .++|.+-+|+.-+|..
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SH-fTcATDT~NIRfVFaa 343 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSH-FTCATDTENIRFVFAA 343 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeee-eeecccchhHHHHHHH
Confidence 5789999999999875311 1111111211111 1111222 3678888999999988
Q ss_pred HHHHhhh
Q 030193 173 LSNNIAT 179 (181)
Q Consensus 173 i~~~l~~ 179 (181)
+.+.+.+
T Consensus 344 VkDtiLq 350 (359)
T KOG0085|consen 344 VKDTILQ 350 (359)
T ss_pred HHHHHHH
Confidence 8776653
No 364
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.4e-07 Score=75.33 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=80.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC-----cc---cccC-------------cccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----IV---TTIP-------------TIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~-----~~---~~~~-------------t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
.+..+|++.-+-.+||||+.++.+... .. +... |.......+.+.+++++++|||||-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 456789999999999999999986422 11 1111 22222345667899999999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|.-...+.++-.|+.++|+|+...- ......+|....+ .++|-+-++||+|--
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 9999999999999999999985321 1233344544433 479999999999953
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.61 E-value=1.4e-07 Score=65.43 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=57.8
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
....+.++|++++|+|+.++..... ..+...+ .+.|+++|+||+|+.++....++...+.. ....++.
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~~~vi~ 80 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KGEKVLF 80 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cCCeEEE
Confidence 3455688999999999976543211 1122222 25789999999999644222222222111 1235789
Q ss_pred cccCCCCCHHHHHHHHHHHh
Q 030193 158 TCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l 177 (181)
+|++++.|++++.+.+...+
T Consensus 81 iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EECCCcccHHHHHHHHHHHH
Confidence 99999999999999998865
No 366
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.58 E-value=4.1e-07 Score=65.80 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=54.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC--Cccc----ccCcccceEEEEEE---CCEEEEEEEcCCCCCccc------cccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG--EIVT----TIPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------LWRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~------~~~~ 80 (181)
...-|+|+|++++|||+|+|++++. .+.. ...|.++-...... .+..+.++||+|-..... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3456789999999999999999998 5541 12355554443333 368899999999543322 1122
Q ss_pred cccc--ccEEEEEEECCCcc
Q 030193 81 YFQN--TQGLIFVVDSNDRD 98 (181)
Q Consensus 81 ~~~~--~d~~i~v~d~~~~~ 98 (181)
.+.. ++++||..+....+
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 2233 88888888876443
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.58 E-value=2.3e-07 Score=63.30 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=38.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g 70 (181)
....+++++|.+|+|||||+|++.+.... +..+ |.......+ +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCC
Confidence 46788999999999999999999987642 2222 333333322 25689999998
No 368
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.57 E-value=3.6e-07 Score=70.16 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=55.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc-c-cccC--cccceEEEEEECC-----------------EEEEEEEcCCCCC---
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEI-V-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK--- 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~--- 73 (181)
.+++++|.|++|||||.|.+++... . .+.| |.+.+...+...+ ..+++.|.||--.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998765 3 2222 4444444443332 4789999999422
Q ss_pred ----cccccccccccccEEEEEEECC
Q 030193 74 ----IRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 74 ----~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
.-...-..++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223444568899999999985
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.52 E-value=1.8e-07 Score=69.77 Aligned_cols=90 Identities=12% Similarity=0.071 Sum_probs=60.6
Q ss_pred ccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEE
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
.....+..+|++++|+|+..+.+-. ...+.+.+. +.|+++|+||+|+.+.....++...+.. .+.+++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~--~~~i~~~l~-----~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~vi 81 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSR--NPMIDEIRG-----NKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKAL 81 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCC--ChhHHHHHC-----CCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeEE
Confidence 3455668899999999997653321 123334332 5799999999999754323333322211 124678
Q ss_pred EcccCCCCCHHHHHHHHHHHhh
Q 030193 157 STCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.+|++++.|++++.+.+.+.+.
T Consensus 82 ~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 82 AINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 8999999999999999887654
No 370
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.50 E-value=2.7e-06 Score=67.68 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=83.3
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCc-cc----------------ccC----------------------------
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI-VT----------------TIP---------------------------- 47 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~----------------~~~---------------------------- 47 (181)
+.++-++|+|+|+..+||||.+..+..... +. ..|
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 346788999999999999999998865321 00 000
Q ss_pred ------------cccceEEEEE--ECC-EEEEEEEcCCC-------------CCcccccccccccccEEEEEEECCCccc
Q 030193 48 ------------TIGFNVETVE--YKN-ISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRDR 99 (181)
Q Consensus 48 ------------t~~~~~~~~~--~~~-~~~~~~d~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s 99 (181)
|.......+. +.+ -++.+.|.||- +....+..+|+.+.+.+|+|+--...
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV-- 461 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV-- 461 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc--
Confidence 1111112222 233 47899999992 22334567888999999999854322
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcc
Q 030193 100 VVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSL 148 (181)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~ 148 (181)
...+......+.+....+...|+|+||.|+.+. ..+..+++.+.-+.+
T Consensus 462 -DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLF 511 (980)
T KOG0447|consen 462 -DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLF 511 (980)
T ss_pred -chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCcc
Confidence 122222223333333346789999999999865 367778877765544
No 371
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.50 E-value=2e-07 Score=62.58 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=49.1
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
..+..+|++++|+|+.++.+.. ...+.+++.... .++|+++|+||+|+.++....++...+ +..+.+++++|
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~iS 78 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVFFS 78 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEEEE
Confidence 3457899999999998765432 223333333221 468999999999996543333333322 22234688999
Q ss_pred cCCCCC
Q 030193 160 ATSGEG 165 (181)
Q Consensus 160 ~~~~~~ 165 (181)
++++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 998764
No 372
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.49 E-value=7.7e-07 Score=78.21 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=64.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-----cCcccceEE-EEE-ECCEEEEEEEcCCCC--------Cccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVE-TVE-YKNISFTVWDVGGQD--------KIRPLWRHYF 82 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~-~~~-~~~~~~~~~d~~g~~--------~~~~~~~~~~ 82 (181)
+=.+|+|++|+||||++..- +-.++-. ..+.+..-+ .++ +-.-+..++||+|.. .....|..++
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 44789999999999999887 3333211 111111100 111 112356799999921 2223344333
Q ss_pred ---------ccccEEEEEEECCCc-----ccHH----HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 83 ---------QNTQGLIFVVDSNDR-----DRVV----EARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 ---------~~~d~~i~v~d~~~~-----~s~~----~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..|++|+++|+.+. +... .+...+.++ .+...-..||.+++||+|+..
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el-~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQEL-REQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEecchhhc
Confidence 358999999998642 1111 112222222 223335899999999999875
No 373
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.47 E-value=5.6e-07 Score=67.38 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=57.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEEC-----------------CEEEEEEEcCCCC--
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQD-- 72 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~~~d~~g~~-- 72 (181)
.+..+++|+|-|++|||||.|.+++.... .+.| |++.+..++... ...++++|++|--
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 36789999999999999999999987654 3344 666666555442 2568999999832
Q ss_pred -----CcccccccccccccEEEEEEECC
Q 030193 73 -----KIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 73 -----~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
..-+..-..++.+|+++=|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 22222334457899999888864
No 374
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=5.2e-07 Score=69.85 Aligned_cols=97 Identities=20% Similarity=0.162 Sum_probs=57.9
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCc
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQR 151 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~ 151 (181)
.|.............+++|+|+.+.. ......+.+.. .+.|+++|+||+|+..... .+++.... ....+..
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l-~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWL-RQEAKEL 129 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHH-HHHHHhc
Confidence 45555554433345999999997643 11222333332 2578999999999975322 22221110 0111111
Q ss_pred ce---EEEEcccCCCCCHHHHHHHHHHHh
Q 030193 152 HW---YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 152 ~~---~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
++ .++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 22 478899999999999999997753
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.39 E-value=1.2e-06 Score=60.00 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=36.8
Q ss_pred CEEEEEEEcCCCCCcccccc--------cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWR--------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
.....++|++|-..-..... ...-..+.+++++|+.+..........+.+.+.. .-++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCEEEEecccC
Confidence 35678899999543222211 1223588999999986433222112233333332 23789999995
No 376
>PRK12288 GTPase RsgA; Reviewed
Probab=98.37 E-value=5.8e-07 Score=68.97 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=34.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc--cc--------C-cccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT--TI--------P-TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~--~~--------~-t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
.++++|.+|+|||||+|+|++..... .. + |+......+... ..++||||-..+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 37899999999999999999875321 11 1 222222233222 2489999965444
No 377
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.37 E-value=9.1e-07 Score=66.41 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=59.7
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
....+..+|++++|+|+..+.+... ..+...+. +.|+++|+||+|+.+....+++...+. ..+.+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEEE
Confidence 4455688999999999976543221 23334332 579999999999965422223322221 11346788
Q ss_pred cccCCCCCHHHHHHHHHHHhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+|++++.|++++.+.+.+.+.
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EECCCcccHHHHHHHHHHHHH
Confidence 999999999999998887654
No 378
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.34 E-value=1.6e-06 Score=67.16 Aligned_cols=55 Identities=16% Similarity=0.342 Sum_probs=37.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc-------ccccCcccceEEEEEECCEEEEEEEcCCCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 72 (181)
..+++++|.+|+|||||+|++++... .+..|.+......+.. +-.+.++||||-.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~ 215 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGII 215 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCC
Confidence 46999999999999999999998542 1233322233333433 1235799999943
No 379
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.33 E-value=4.9e-07 Score=61.62 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
-.++++|++|||||||+|+|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678899999999999999999874
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.32 E-value=2.1e-06 Score=66.49 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=36.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc-------ccccCcccceEEEEEECCEEEEEEEcCCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~ 71 (181)
...++.++|.+|+|||||+|+|.+... .+..|.+......+...+ ...++||||-
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 356899999999999999999986431 123343223333333322 2479999994
No 381
>PRK01889 GTPase RsgA; Reviewed
Probab=98.32 E-value=4.4e-06 Score=64.55 Aligned_cols=84 Identities=23% Similarity=0.202 Sum_probs=55.3
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
..++|.+++|+++..+-....++.++... .. .+++.++|+||+|+.+... +........ ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~~---~~i~piIVLNK~DL~~~~~-~~~~~~~~~----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALA-WE---SGAEPVIVLTKADLCEDAE-EKIAEVEAL----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHH-HH---cCCCEEEEEEChhcCCCHH-HHHHHHHHh----CCCCcEEEEECC
Confidence 47899999999996433333344433332 22 4678899999999975411 111111111 235678999999
Q ss_pred CCCCHHHHHHHHH
Q 030193 162 SGEGLYEGLDWLS 174 (181)
Q Consensus 162 ~~~~i~~~~~~i~ 174 (181)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
No 382
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.29 E-value=8e-06 Score=62.08 Aligned_cols=138 Identities=20% Similarity=0.238 Sum_probs=74.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC------c--ccccC--------------cccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE------I--VTTIP--------------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~------~--~~~~~--------------t~~~~~~~~----------------- 56 (181)
..--|+++|++|+||||++..+...- . .+..+ ..+..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34578899999999999998885421 0 00000 011111111
Q ss_pred EECCEEEEEEEcCCCCCcccc----ccc--------ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030193 57 EYKNISFTVWDVGGQDKIRPL----WRH--------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~~----~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...++.+.++||||....... ... .-...+..++|+|++.. .....+ ...+... -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEE
Confidence 124578999999996432211 111 11347889999999742 222222 2222211 1355799
Q ss_pred EeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 125 ANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 125 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
+||.|....-. .-.+....+. |+..++ +|++++++-
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~~--------Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELGI--------PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHHHCC--------CEEEEe--CCCChhhCc
Confidence 99999654432 2233333333 444444 777776653
No 383
>PRK12289 GTPase RsgA; Reviewed
Probab=98.27 E-value=1.3e-06 Score=67.16 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.++|+|++|+|||||+|+|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999999765
No 384
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.26 E-value=3e-06 Score=62.13 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=34.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc--c--------cC-cccceEEEEEECCEEEEEEEcCCCCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVT--T--------IP-TIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~--~--------~~-t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
..++++|++|+|||||+|++.+..... . .+ |+......+ .+ ..++||||-..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 478899999999999999999764321 1 11 233333333 22 37999999643
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=98.24 E-value=8.2e-06 Score=62.34 Aligned_cols=139 Identities=23% Similarity=0.269 Sum_probs=74.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC------Cc--cccc---C-----------cccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTTI---P-----------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~------~~--~~~~---~-----------t~~~~~~~~----------------- 56 (181)
+...|+++|++|+||||++..+... .. .... . ..+..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 3567899999999999987777531 11 0000 0 011111100
Q ss_pred EECCEEEEEEEcCCCCCcccc----ccccc--ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 57 EYKNISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
...++.+.++||+|....... ...+. .+.|..++|+|+...+.-......+...+ .+--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecC
Confidence 113467999999996542211 11111 25788999999964322111122222211 245789999998
Q ss_pred CCCCCHh-HHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 131 PNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 131 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
...-... .+....+. |+..++ +|.+++++..
T Consensus 292 ~~~~G~~ls~~~~~~~--------Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAALSIAYVIGK--------PILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHHHHHHHHHCc--------CEEEEe--CCCChhhccc
Confidence 6543322 23333333 444444 7888877653
No 386
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.18 E-value=2.3e-05 Score=58.38 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=52.9
Q ss_pred CCEEEEEEEcCCCCCccccc----c--------cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030193 59 KNISFTVWDVGGQDKIRPLW----R--------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~----~--------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
.++.+.++||||........ . ..-..+|..++|+|+... ..... ....+.+.. .+.-+|+|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 45789999999975432221 1 111248999999999642 22222 222222211 24689999
Q ss_pred CCCCCCCCCHh-HHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 127 KQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 127 K~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|.|....-... .+....+. |+..++ +|.+++++-
T Consensus 226 KlDe~~~~G~~l~~~~~~~~--------Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELKL--------PIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHHCc--------CEEEEe--CCCChHhCc
Confidence 99986544322 33333333 444444 677776654
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.17 E-value=1.6e-05 Score=62.55 Aligned_cols=110 Identities=20% Similarity=0.146 Sum_probs=62.4
Q ss_pred cceEEEEcCCCCChHHHHhhhh------cCCcc--cc---cC-----------cccceEEEEE-----------------
Q 030193 17 EMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IP-----------TIGFNVETVE----------------- 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~------~~~~~--~~---~~-----------t~~~~~~~~~----------------- 57 (181)
.--|+++|++||||||++..|. +.... +. .+ ..+..+....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 3468899999999999999885 22211 11 10 1112222111
Q ss_pred ECCEEEEEEEcCCCCCcccc----cccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 58 YKNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
..++.+.|+||+|....... ...+ ....+-+++|+|+.-.+.-....+.|.+. -.+.-+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 02578999999995433211 1111 13478899999986432222222223221 23678999999986
Q ss_pred CC
Q 030193 132 NA 133 (181)
Q Consensus 132 ~~ 133 (181)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 43
No 388
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.13 E-value=2.2e-05 Score=53.16 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=36.3
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
++.+.++|++|..... . .++..+|.+++|..+.--+.+.-..- ..+ ..--++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~--~-~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE--V-DIASMADTTVVVMAPGAGDDIQAIKA---GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh--h-hHHHhCCEEEEEECCCchhHHHHhhh---hHh------hhcCEEEEeCCC
Confidence 5789999999864222 2 36688999999988862222211111 111 234489999987
No 389
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.13 E-value=6.8e-05 Score=50.77 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...++|+|-|+||+||||++.++.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 3468999999999999999988864
No 390
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.07 E-value=4.6e-06 Score=65.70 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=38.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCcccce--EEEEEECCEEEEEEEcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGG 70 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~d~~g 70 (181)
.+.|++||-|||||||.||+|.+.+-.+...|.|-. +.++.+ .-.+.+.|.||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCC
Confidence 589999999999999999999999976554443321 222222 34578899999
No 391
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.07 E-value=1.2e-05 Score=56.60 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=60.2
Q ss_pred EEEEEEEcCCCCCcccc---ccccc---cc---ccEEEEEEECC---C-cccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030193 61 ISFTVWDVGGQDKIRPL---WRHYF---QN---TQGLIFVVDSN---D-RDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~---~~~~~---~~---~d~~i~v~d~~---~-~~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
-.+-++|.|||-+.... .+... +. --.++|++|.. + ..=+.+...-+...+. -.+|.|=|++|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 35778999997543221 11111 11 11345555542 1 1122344444555555 37899999999
Q ss_pred CCCCCCCCHhHHHhhhCCCc---------------c-----------CCc-ceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 128 QDLPNAMNAAEITDKLGLHS---------------L-----------RQR-HWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 128 ~D~~~~~~~~~~~~~~~~~~---------------~-----------~~~-~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+|+......+++.+-+.... + ... -+.+.+..+.+.++++.++..|-.++
T Consensus 174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 99987654444444332110 0 111 13466666777777777777666554
No 392
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.05 E-value=6.5e-05 Score=58.42 Aligned_cols=151 Identities=18% Similarity=0.255 Sum_probs=81.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC-----------------Ccccc-----cCcccceE-----EEEEE---CCEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG-----------------EIVTT-----IPTIGFNV-----ETVEY---KNISFT 64 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~-----------------~~~~~-----~~t~~~~~-----~~~~~---~~~~~~ 64 (181)
.-.+=|+|+||..+||||||.+|..- +.+.. ..|++..+ ..+.. -.++++
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 34678899999999999999999541 12211 11232222 12222 347889
Q ss_pred EEEcCCC-------------CCcc-ccc---------------ccccc--cccEEEEEEECC----CcccHHHHHHHHHH
Q 030193 65 VWDVGGQ-------------DKIR-PLW---------------RHYFQ--NTQGLIFVVDSN----DRDRVVEARDELHR 109 (181)
Q Consensus 65 ~~d~~g~-------------~~~~-~~~---------------~~~~~--~~d~~i~v~d~~----~~~s~~~~~~~~~~ 109 (181)
+.|..|. +++- .-| ...++ ..-++++.=|-+ .++.+....+...+
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 9998871 1110 001 11111 233444444442 24556556555555
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC--CCCHHHHHHHH
Q 030193 110 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS--GEGLYEGLDWL 173 (181)
Q Consensus 110 ~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~i 173 (181)
.++. -++|.++++|-.+-.. .+..+++..+. ++++++++++++.+ .+.+..+++.+
T Consensus 175 ELk~---igKPFvillNs~~P~s-~et~~L~~eL~----ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 175 ELKE---IGKPFVILLNSTKPYS-EETQELAEELE----EKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHHH---hCCCEEEEEeCCCCCC-HHHHHHHHHHH----HHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 5554 4799999999988432 23333443332 34556777777654 34444444443
No 393
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.04 E-value=1.3e-05 Score=59.84 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=34.3
Q ss_pred HHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCccc
Q 030193 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT 44 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~ 44 (181)
|..++..+...+..+++++|++|.|||+++++|...+...
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~ 88 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ 88 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC
Confidence 5567777777888999999999999999999999877543
No 394
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.04 E-value=1.6e-05 Score=59.71 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=35.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc--cC-------cccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTT--IP-------TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~-------t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
..++++|++|+|||||+|.+.+...... .+ .+......+.... ...++|+||-..+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 5789999999999999999998653311 11 0111112222221 23689999986553
No 395
>PRK00098 GTPase RsgA; Reviewed
Probab=98.04 E-value=9.7e-06 Score=61.20 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
...++++|++|+|||||+|++.+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 45789999999999999999988653
No 396
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2.6e-05 Score=61.62 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=74.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC------------cccccC---cccceEEE--E------------------EEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTTIP---TIGFNVET--V------------------EYK 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~~~---t~~~~~~~--~------------------~~~ 59 (181)
.+..++.++.+...|||||..+|.... |.+... ..++.+.. + +..
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 455678899999999999999996532 211111 11111111 1 113
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
+.-++++|.|||-+|.+..-..++-.|+.+.|+|-.+--.. +.+..+.+.+. .++.-+++.||.|-
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHH----hhccceEEeehhhH
Confidence 57789999999999999999999999999999997543211 12233333333 25666889999994
No 397
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.02 E-value=2.1e-05 Score=55.71 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=58.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc--------c--c-ccC-----------cccceEEEE-----------------EEC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEI--------V--T-TIP-----------TIGFNVETV-----------------EYK 59 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~--------~--~-~~~-----------t~~~~~~~~-----------------~~~ 59 (181)
-|+++|++|+||||.+-+|..... . + ... ..++..... ..+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 478999999999999888843210 0 0 000 111221111 113
Q ss_pred CEEEEEEEcCCCCCcccc----ccccc--ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++.+.++||+|....... +..+. ...+-+++|++++... +... ........ -.+--+++||.|....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~----~~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEA----FGIDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHH----SSTCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhc----ccCceEEEEeecCCCC
Confidence 477999999996543321 11221 1577899999997432 2222 12222211 1123677999997654
Q ss_pred C
Q 030193 134 M 134 (181)
Q Consensus 134 ~ 134 (181)
.
T Consensus 156 ~ 156 (196)
T PF00448_consen 156 L 156 (196)
T ss_dssp T
T ss_pred c
Confidence 3
No 398
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.97 E-value=9.9e-06 Score=44.96 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=25.6
Q ss_pred ccccEEEEEEECCCcccHHHHH--HHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEAR--DELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
+-.+.++|++|++..+++.-.. ..+.++... ..++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 3478999999999877664333 334343332 13899999999998
No 399
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.96 E-value=1.2e-05 Score=56.06 Aligned_cols=109 Identities=21% Similarity=0.247 Sum_probs=63.5
Q ss_pred EEEEcCCCCChHHHHhhhhc-C-----------Ccccc------cCcccceEEEEEE---------------------C-
Q 030193 20 ILMVGLDAAGKTTILYKLKL-G-----------EIVTT------IPTIGFNVETVEY---------------------K- 59 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~-~-----------~~~~~------~~t~~~~~~~~~~---------------------~- 59 (181)
+++-|.-|||||||+++++. . ++... ....+.....+.. .
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 57899999999999999983 1 11100 0011122222211 2
Q ss_pred -CEEEEEEEcCCCCCcccc--cccc---cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 60 -NISFTVWDVGGQDKIRPL--WRHY---FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 -~~~~~~~d~~g~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.....++++.|-..-... .... .-..+.++.|+|+.+..........+.+.+.... ++++||+|+.+.
T Consensus 83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~ 156 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSD 156 (178)
T ss_dssp GC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHH
T ss_pred CCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCCh
Confidence 356778899985443333 1111 1236889999999765444455556666666433 999999999765
Q ss_pred C
Q 030193 134 M 134 (181)
Q Consensus 134 ~ 134 (181)
.
T Consensus 157 ~ 157 (178)
T PF02492_consen 157 E 157 (178)
T ss_dssp H
T ss_pred h
Confidence 4
No 400
>PRK13695 putative NTPase; Provisional
Probab=97.94 E-value=0.00026 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998654
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=7.5e-05 Score=57.85 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=64.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc----------cccC--------------cccceEEEE-----------EECC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV----------TTIP--------------TIGFNVETV-----------EYKN 60 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------~~~~--------------t~~~~~~~~-----------~~~~ 60 (181)
+.-.++++|++|+||||++..|...... +... ..+.....+ ...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 4568889999999999999998643110 0000 011111111 1245
Q ss_pred EEEEEEEcCCCCCcccc----cccc--cccccEEEEEEECCC-cccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~~ 132 (181)
..+.++||+|....... .... .....-.++|++++. .+........|..........- .+--+|+||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 78999999996543221 1111 123456688999874 3333444344443322110000 13467889999765
Q ss_pred C
Q 030193 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 296 ~ 296 (374)
T PRK14722 296 N 296 (374)
T ss_pred C
Confidence 4
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.92 E-value=4.9e-05 Score=52.68 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=38.6
Q ss_pred CEEEEEEEcCCCCCccc----ccccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRP----LWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++|++|...... ....+ ....+.+++|+|+....+ ..+......... + ...+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 46688999999743221 11111 124899999999964432 222333332221 2 35678899997653
No 403
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.91 E-value=4.9e-05 Score=56.71 Aligned_cols=87 Identities=24% Similarity=0.185 Sum_probs=58.5
Q ss_pred ccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 83 QNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
.+.|-+++|+.+.+|+ +...+++++.. ... .++..++++||+|+.+..+.+. ......+...+++++.+|++
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~-ae~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVL-AEA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHH-HHH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEecCc
Confidence 4567777777777664 33333333333 222 4788888899999987655553 12233344567789999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030193 162 SGEGLYEGLDWLSNN 176 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~ 176 (181)
++++++++.+.+...
T Consensus 151 ~~~~~~~l~~~l~~~ 165 (301)
T COG1162 151 NGDGLEELAELLAGK 165 (301)
T ss_pred CcccHHHHHHHhcCC
Confidence 999999999887653
No 404
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.88 E-value=4.3e-05 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+|++-|++|+||||++.+++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 405
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.86 E-value=1e-05 Score=61.93 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=40.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEE-ECCEEEEEEEcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-YKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~d~~g 70 (181)
.+.++++|+|-|++||||+||+|.........++.++...--. .-+-.+.|.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCc
Confidence 5689999999999999999999998876544443333221111 1245689999999
No 406
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.86 E-value=0.00034 Score=53.30 Aligned_cols=141 Identities=21% Similarity=0.167 Sum_probs=74.7
Q ss_pred EEEEcCCCCChHHHHhhhhcCCc-----------c----cc---cC---------cccceEEEEEE-------------C
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEI-----------V----TT---IP---------TIGFNVETVEY-------------K 59 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~-----------~----~~---~~---------t~~~~~~~~~~-------------~ 59 (181)
.++-|.=||||||++++++.+.. . +. .. +.++-++.+.. .
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 35678899999999999976432 1 10 00 11222222211 2
Q ss_pred CEEEEEEEcCCCCCcccccc-----ccc---ccccEEEEEEECCCcccHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWR-----HYF---QNTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~-----~~~---~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
.....++++.|-..-..... ..+ -..|.++-|+|+.+...... ..+.+.+.+.. --++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccC
Confidence 24567788888432211111 111 23688999999975432222 33444444443 23899999999
Q ss_pred CCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
.+....+.++...... +...+++.+|. .+....+++
T Consensus 158 v~~~~l~~l~~~l~~l---np~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 158 VDAEELEALEARLRKL---NPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CCHHHHHHHHHHHHHh---CCCCeEEEccc-cCCCHHHhh
Confidence 9876544444333211 12335666665 334444333
No 407
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.79 E-value=0.00016 Score=44.64 Aligned_cols=97 Identities=20% Similarity=0.114 Sum_probs=55.5
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccc-cccccccccEEEEEEECCCcc
Q 030193 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~ 98 (181)
+++.|..|+|||+++..+...--. .+.....++ .+.++|+++....... .......+|.++++++... .
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-L 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-h
Confidence 578899999999998888654321 111222222 8899999987543331 1344467899999998863 3
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
+....................+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3344333322222222223455555544
No 408
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.78 E-value=2.7e-05 Score=58.06 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-.+++|++|+|||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5679999999999999999874
No 409
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=5.7e-05 Score=65.78 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=62.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cc--cC-cccceEEEEE-ECCEEEEEEEcCCCC--------Ccccccccc----
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IP-TIGFNVETVE-YKNISFTVWDVGGQD--------KIRPLWRHY---- 81 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~-t~~~~~~~~~-~~~~~~~~~d~~g~~--------~~~~~~~~~---- 81 (181)
=-+|+|++|+||||++..---+... .. .. ..+......+ +-.-+-.++||+|.. .-...|..+
T Consensus 127 Wy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred ceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 3589999999999998654332211 11 01 1111111111 223467889999931 222334322
Q ss_pred -----cccccEEEEEEECCCcc----cHH-H----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 82 -----FQNTQGLIFVVDSNDRD----RVV-E----ARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 -----~~~~d~~i~v~d~~~~~----s~~-~----~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+..|++|+.+|+++.- ... + +..-+.+ +........|+.+++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~E-l~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQE-LRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHH-HHHhhccCCceEEEEecccccc
Confidence 35689999999985421 111 1 1111222 2223335799999999999875
No 410
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=3.1e-05 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 411
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.67 E-value=0.00015 Score=55.29 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++.|.-|||||||+|+++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 457899999999999999754
No 412
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.64 E-value=0.00022 Score=54.88 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 467899999999999999753
No 413
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00014 Score=57.28 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=60.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-----c----ccCc---------------ccceEEE-----------EEECC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-----T----TIPT---------------IGFNVET-----------VEYKN 60 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~----~~~t---------------~~~~~~~-----------~~~~~ 60 (181)
..-.|+++|+.|+||||++..|.+.... . ...+ .++.... ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 3458999999999999999988653110 0 0000 1111111 11245
Q ss_pred EEEEEEEcCCCCCcc----ccccccc--ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIR----PLWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
....++||+|..... .....+. ....-.++|+|++.. ...+.+....+ .. --+--+++||.|....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f-~~----~~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAY-QG----HGIHGCIITKVDEAAS 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHh-cC----CCCCEEEEEeeeCCCC
Confidence 678999999954321 1122221 234567899999732 12233333222 21 1234688999997654
No 414
>PRK08118 topology modulation protein; Reviewed
Probab=97.59 E-value=5.2e-05 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+|+|+|++|||||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 415
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.0004 Score=56.00 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=60.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--------Cc--ccccC--------------cccceEEEE-----------EEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--------EI--VTTIP--------------TIGFNVETV-----------EYK 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~--~~~~~--------------t~~~~~~~~-----------~~~ 59 (181)
...-.|+++|++|+||||++..|... .. .+..+ ..++.+... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34568899999999999999888542 11 11111 011111111 113
Q ss_pred CEEEEEEEcCCCCCcccc-------cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPL-------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++.+.|+||+|....... .... . ....++|++... +.....+.+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 578999999996432211 1111 1 234677777753 23333333333221 246779999999754
Q ss_pred C
Q 030193 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 499 ~ 499 (559)
T PRK12727 499 R 499 (559)
T ss_pred c
Confidence 3
No 416
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.56 E-value=6e-05 Score=52.57 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 417
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.55 E-value=8e-05 Score=55.52 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=36.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-----cccC----cccceE-EEEEECCEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-----TTIP----TIGFNV-ETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~----t~~~~~-~~~~~~~~~~~~~d~~g~ 71 (181)
....+++|+|-||+|||||+|++...... ...+ |..+.. .++. ..-.+.+.||||-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCc
Confidence 35789999999999999999999765432 1222 222222 2222 2345889999993
No 418
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.55 E-value=0.0002 Score=56.72 Aligned_cols=109 Identities=23% Similarity=0.324 Sum_probs=59.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC------Cc--c---cccC-----------cccceEEEE---------------EE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--V---TTIP-----------TIGFNVETV---------------EY 58 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~------~~--~---~~~~-----------t~~~~~~~~---------------~~ 58 (181)
....|+++|++|+||||++..+... .+ . ...+ ..+..+... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 3567889999999999998888531 10 0 0111 011111110 00
Q ss_pred CCEEEEEEEcCCCCCcccc----cc--cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC-eEEEEEeCCCCC
Q 030193 59 KNISFTVWDVGGQDKIRPL----WR--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-VLLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~ 131 (181)
....+.|+||+|....... .. .....+|.+++|+|++..+ ........+ .. .. ..-+|+||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F-~~----~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAF-HE----AVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHH-Hh----cCCCCEEEEecccCC
Confidence 2347899999996543211 11 1123578999999986532 222222221 11 12 346788999975
Q ss_pred C
Q 030193 132 N 132 (181)
Q Consensus 132 ~ 132 (181)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 4
No 419
>PRK07261 topology modulation protein; Provisional
Probab=97.54 E-value=6.9e-05 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+|+|+|++|||||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 420
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00026 Score=59.44 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc----------c---ccC-----------cccceEEEE-----------EECCEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV----------T---TIP-----------TIGFNVETV-----------EYKNIS 62 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~----------~---~~~-----------t~~~~~~~~-----------~~~~~~ 62 (181)
--|+++|+.|+||||.+..+...... + ... ..++..... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 35789999999999999988653210 0 000 011111100 124568
Q ss_pred EEEEEcCCCCCcc----cccccc--cccccEEEEEEECCC-cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 63 FTVWDVGGQDKIR----PLWRHY--FQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 63 ~~~~d~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.|+||+|..... ...... ....+-.++|+|++. .+.+..+.+.|..... --+--+|+||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~-----~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG-----EDVDGCIITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc-----CCCCEEEEeccCCCCC
Confidence 9999999943221 111111 134567899999973 2333333333322111 0234688999997654
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.53 E-value=0.00038 Score=55.10 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc----------ccccCc--------------ccceEEEE-----------EECCEE
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEI----------VTTIPT--------------IGFNVETV-----------EYKNIS 62 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~----------~~~~~t--------------~~~~~~~~-----------~~~~~~ 62 (181)
-.++++|++|+||||++..|..... .+..+. .++..... ...++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 4789999999999998777643111 011110 11111110 113578
Q ss_pred EEEEEcCCCCCcc----cccccccc---cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 63 FTVWDVGGQDKIR----PLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 63 ~~~~d~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.|+||+|..... .....++. ...-.++|++++.. ...+.+.+..+ .. .+ +--+++||.|....
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~---~~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SR---LP-LDGLIFTKLDETSS 372 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CC---CC-CCEEEEeccccccc
Confidence 9999999965432 11222222 33567788888532 22333333332 21 11 23689999997543
No 422
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.52 E-value=9.2e-05 Score=42.10 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
..+|.|+.|+|||||++++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998853
No 423
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.51 E-value=0.00033 Score=54.36 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=61.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccC-----c------------------ccceEEEE-----------EECCE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP-----T------------------IGFNVETV-----------EYKNI 61 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~-----t------------------~~~~~~~~-----------~~~~~ 61 (181)
.-.|+++||.|+||||-+-.|...... ...+ | +++...-+ ....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 677899999999999998888544321 0000 1 11111111 12457
Q ss_pred EEEEEEcCCCCCcccc----ccccccc--ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 62 SFTVWDVGGQDKIRPL----WRHYFQN--TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~~~d~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.+.++||.|...+... ...++.. ..-+.+|++++... ..+...+..+.. =..--+++||.|-...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~-----~~i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSL-----FPIDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhcc-----CCcceeEEEcccccCc
Confidence 8999999997554332 3333332 34556788886432 233333333321 1223578999997653
No 424
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00019 Score=56.34 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=60.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------c--ccccC--------------cccceEEEE----------EECCEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE-------I--VTTIP--------------TIGFNVETV----------EYKNISF 63 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~-------~--~~~~~--------------t~~~~~~~~----------~~~~~~~ 63 (181)
..-++++|++||||||++..|.... . .+..+ ..+...... ...++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999999886421 0 01000 111111111 1136788
Q ss_pred EEEEcCCCCCc-cc---ccccccc-----cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 64 TVWDVGGQDKI-RP---LWRHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 64 ~~~d~~g~~~~-~~---~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.++||+|.... .. .+..++. ...-.++|+|++... ....+....+ .. --+--+|+||.|-...-
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~~ 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADFL 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCCc
Confidence 99999996422 11 1122211 244688999996432 2333323222 21 12457889999976543
No 425
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.50 E-value=8.5e-05 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+++|+|||||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999743
No 426
>PRK10867 signal recognition particle protein; Provisional
Probab=97.49 E-value=0.00028 Score=55.80 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=35.9
Q ss_pred CEEEEEEEcCCCCCccc----ccccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRP----LWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++.+.|+||+|...... ....+ ....+.+++|+|+...+ ...+....+... -...-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~----~~i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEA----LGLTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhh----CCCCEEEEeCccCcc
Confidence 47799999999543211 11111 12467789999986432 222222222211 112457779999654
No 427
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.49 E-value=0.00076 Score=42.53 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=47.8
Q ss_pred EEEEcC-CCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 20 ILMVGL-DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~v~G~-~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
|++.|. .|+||||+...+...-.....+ ......+ ..+.+.++|+|+...... ...+..+|.++++++.+ ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~---vl~~d~d-~~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~~-~~ 74 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKR---VLLIDLD-PQYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQPS-PL 74 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCc---EEEEeCC-CCCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccCC-HH
Confidence 567774 7899999977764322110000 1000011 016789999998754332 25667799999999886 44
Q ss_pred cHHHHHHHH
Q 030193 99 RVVEARDEL 107 (181)
Q Consensus 99 s~~~~~~~~ 107 (181)
++....+.+
T Consensus 75 s~~~~~~~~ 83 (104)
T cd02042 75 DLDGLEKLL 83 (104)
T ss_pred HHHHHHHHH
Confidence 455554443
No 428
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.48 E-value=8.5e-05 Score=49.65 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.5
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+.++||+|.|.||+||||+..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 37789999999999999999999974
No 429
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00012 Score=56.13 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=38.5
Q ss_pred CCEEEEEEEcCCCCC-----cccccc-cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 59 KNISFTVWDVGGQDK-----IRPLWR-HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~-----~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+++.+.|.||+|... |..... .-.-+.|-+|+|+|++--+.-.....-|.+.+.- --+++||.|...
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-------g~vIlTKlDGha 254 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-------GAVILTKLDGHA 254 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-------ceEEEEecccCC
Confidence 568999999999321 222211 1113589999999997443333333344443321 246677777653
No 430
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.46 E-value=9e-05 Score=52.65 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=22.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
+.=.++++||+|||||||++++-+-+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 445789999999999999999976554
No 431
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.46 E-value=0.00077 Score=42.87 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=54.1
Q ss_pred EEEEcC-CCCChHHHHhhhhcCCcc---------cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 20 ILMVGL-DAAGKTTILYKLKLGEIV---------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 20 i~v~G~-~~~GKSsli~~l~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
|+++|. .|+||||+...|...-.. +..+..+ ..+.++|+|+..... ....+..+|.++
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~----------~D~IIiDtpp~~~~~--~~~~l~~aD~vl 69 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG----------DDYVVVDLGRSLDEV--SLAALDQADRVF 69 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC----------CCEEEEeCCCCcCHH--HHHHHHHcCeEE
Confidence 344444 789999987666322111 1122111 178999999865432 234567899999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCC-CCeEEEEEeC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELR-DAVLLVFANK 127 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~piivv~nK 127 (181)
++++++ ..++............ .... ...+.+|+|+
T Consensus 70 vvv~~~-~~s~~~~~~~~~~l~~-~~~~~~~~~~lVvNr 106 (106)
T cd03111 70 LVTQQD-LPSIRNAKRLLELLRV-LDYSLPAKIELVLNR 106 (106)
T ss_pred EEecCC-hHHHHHHHHHHHHHHH-cCCCCcCceEEEecC
Confidence 999886 3345555444333222 2222 3467777775
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0011 Score=51.78 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=62.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC----------c--ccccC--------------cccceEEEEE-----------EC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE----------I--VTTIP--------------TIGFNVETVE-----------YK 59 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~----------~--~~~~~--------------t~~~~~~~~~-----------~~ 59 (181)
...|+++|++|+||||.+..+...- . .+..+ ..++.+.... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4578899999999999988885321 0 00000 1122221111 14
Q ss_pred CEEEEEEEcCCCCCccc----cccccccc---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRP----LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++.+.++||+|...... ....++.. ..-.++|+|++.. ...+.+.+..+.. -.+--+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 67899999999643221 11222221 2368899999743 2334444444321 124578899999765
Q ss_pred CC
Q 030193 133 AM 134 (181)
Q Consensus 133 ~~ 134 (181)
.-
T Consensus 327 ~~ 328 (388)
T PRK12723 327 CV 328 (388)
T ss_pred cc
Confidence 43
No 433
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.44 E-value=0.00012 Score=42.80 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHhhhhcCC
Q 030193 20 ILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~ 41 (181)
|++.|++|+||||+.+.+...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998663
No 434
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.40 E-value=0.0016 Score=47.01 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=30.5
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCC
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLP 131 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~ 131 (181)
..+++|.+|.|+|++ ..++.... .+.+...+ -+ .++.+|+||.|..
T Consensus 152 ~~~~vD~vivVvDpS-~~sl~tae-ri~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPS-YKSLRTAE-RIKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCc-HHHHHHHH-HHHHHHHH---hCCceEEEEEeeccch
Confidence 346799999999997 33443332 23333333 23 7899999999954
No 435
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.40 E-value=0.0008 Score=53.27 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=37.1
Q ss_pred CCEEEEEEEcCCCCCccc----ccccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 59 KNISFTVWDVGGQDKIRP----LWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.++.+.|+||+|...... ....+ ....+.+++|+|+...+ ........+.... ...-+|.||.|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v----~i~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL----GLTGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC----CCCEEEEeCccCcc
Confidence 346799999999543211 11111 23478899999986432 2222222222111 13467799999644
No 436
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.38 E-value=0.00032 Score=48.69 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=33.8
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHH--hcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
|++++|+|+..+.+- ....+.+. +.. .+.|+++|+||+|+.+.....++...+
T Consensus 1 DvVl~VvDar~p~~~--~~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGC--RCPQVEEAVLQAG---GNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCC--CCHHHHHHHHhcc---CCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 789999999765321 12233333 222 358999999999998655444444443
No 437
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.00034 Score=54.21 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=64.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC--------cccccC--------------cccceEEEEE--------------EC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE--------IVTTIP--------------TIGFNVETVE--------------YK 59 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~--------~~~~~~--------------t~~~~~~~~~--------------~~ 59 (181)
..-.++++|+.|+||||++..+...- +.+..+ ..++.+.... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 35567899999999999998885311 011111 1111111110 02
Q ss_pred CEEEEEEEcCCCCCcccc----cccccc--cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++.+.|+||+|....... ...+.. ..+.+++|+++.. ........+.. +. .-.+--+|+||.|....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~-f~----~l~i~glI~TKLDET~~ 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPK-LA----EIPIDGFIITKMDETTR 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHh-cC----cCCCCEEEEEcccCCCC
Confidence 478999999997543221 122222 3466677877632 12223222222 11 12345788999997654
Q ss_pred CCH-hHHHhhhCCC
Q 030193 134 MNA-AEITDKLGLH 146 (181)
Q Consensus 134 ~~~-~~~~~~~~~~ 146 (181)
-.. -.+....+.+
T Consensus 358 ~G~~Lsv~~~tglP 371 (407)
T PRK12726 358 IGDLYTVMQETNLP 371 (407)
T ss_pred ccHHHHHHHHHCCC
Confidence 322 2344444443
No 438
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.37 E-value=0.00011 Score=50.51 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999765
No 439
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.37 E-value=0.00017 Score=47.85 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=23.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV 43 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 43 (181)
..-.++|+|+.|+|||||++.+.+....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCCEEEEEccCCCccccceeeecccccc
Confidence 3457899999999999999999887643
No 440
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.37 E-value=0.00033 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=19.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++++|+.|+||||.+..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34588999999999999998864
No 441
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00016 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-|+++|++|||||||++-+.+-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3357899999999999999998744
No 442
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.34 E-value=0.00016 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
+.=-++|+||+|||||||+|-+-+-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34468999999999999999997654
No 443
>PRK14530 adenylate kinase; Provisional
Probab=97.34 E-value=0.00018 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..+|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999964
No 444
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.30 E-value=0.0002 Score=46.73 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999765
No 445
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.29 E-value=0.00042 Score=48.68 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=26.2
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.++.... +..-.++++|++||||||+++.+.+-.
T Consensus 16 ~~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 16 AYLWLAV-EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444444 346789999999999999999998754
No 446
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.29 E-value=0.00038 Score=53.71 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=50.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE-EEEEECCEEEEEEEcCCCCCcc--cccccccccccEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYKNISFTVWDVGGQDKIR--PLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~d~~g~~~~~--~~~~~~~~~~d~~i~ 90 (181)
....|-|+++|-|++||||+||+|.........|-.+..- ..+----.++-++|.||--.-. ...... -.+++=
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~iv---LkGvVR 380 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIV---LKGVVR 380 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHH---hhceee
Confidence 4678999999999999999999999998776555333211 0000001356678999843222 122222 234555
Q ss_pred EEECCCcc
Q 030193 91 VVDSNDRD 98 (181)
Q Consensus 91 v~d~~~~~ 98 (181)
|=++.+++
T Consensus 381 Venv~~pe 388 (572)
T KOG2423|consen 381 VENVKNPE 388 (572)
T ss_pred eeecCCHH
Confidence 66666654
No 447
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.28 E-value=0.00023 Score=50.87 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+...|+|.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998753
No 448
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.27 E-value=0.00097 Score=44.57 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=57.3
Q ss_pred EEcCCCCChHHHHhhhhcCCc--------ccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 22 MVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 22 v~G~~~~GKSsli~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.-|.+|+|||++.-.+...-- .+..++.. .+ .+.+.++|+|+... ......+..+|.++++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~----~~---~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA----NL---DYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC----CC---CCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcC
Confidence 446789999999666643211 11111110 01 17899999997532 223456788999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
++ ..++......+..+.... ...++.+|+|+.+.
T Consensus 76 ~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 96 344444333332322211 34577899999973
No 449
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.26 E-value=0.0033 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-+++-||+|+||||.+..|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999754
No 450
>PRK06217 hypothetical protein; Validated
Probab=97.26 E-value=0.00024 Score=49.79 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 451
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.25 E-value=0.00031 Score=46.10 Aligned_cols=27 Identities=33% Similarity=0.249 Sum_probs=23.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV 43 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~ 43 (181)
.-.++++|++|+|||+++..+...-..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 357899999999999999999876654
No 452
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.25 E-value=0.00027 Score=47.35 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.|+|+|+.|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 453
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.25 E-value=0.00025 Score=46.47 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHhhhhcCC
Q 030193 20 ILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~ 41 (181)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998764
No 454
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.24 E-value=0.00024 Score=48.65 Aligned_cols=51 Identities=33% Similarity=0.483 Sum_probs=32.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
.+.++|.+|+|||||++++...- ...+.....+......+.+ |.+|.+.++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 57899999999999999998632 1223333344444444443 677654443
No 455
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.23 E-value=0.0013 Score=48.89 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=66.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC--------ccccc--------------CcccceEEEE--------------EECC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE--------IVTTI--------------PTIGFNVETV--------------EYKN 60 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~--------~~~~~--------------~t~~~~~~~~--------------~~~~ 60 (181)
.-+++++|++|+||||++..+...- +.+.. ...++..... ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3699999999999999988775321 00100 0112221111 0125
Q ss_pred EEEEEEEcCCCCCccc----cccccc--ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRP----LWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+.+.++|++|...... .+..++ ...+-+++|+|++... +...+....+ .. -.+--+++||.|....-
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f-~~----~~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF-KD----IHIDGIVFTKFDETASS 227 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHh-CC----CCCCEEEEEeecCCCCc
Confidence 7899999999753221 122222 2456789999986321 2222322222 21 23457899999987644
Q ss_pred CH-hHHHhhhCC
Q 030193 135 NA-AEITDKLGL 145 (181)
Q Consensus 135 ~~-~~~~~~~~~ 145 (181)
.. -.+....+.
T Consensus 228 G~~l~~~~~~~~ 239 (270)
T PRK06731 228 GELLKIPAVSSA 239 (270)
T ss_pred cHHHHHHHHHCc
Confidence 32 234444443
No 456
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.22 E-value=0.00027 Score=47.14 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.21 E-value=0.00025 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999653
No 458
>PRK03839 putative kinase; Provisional
Probab=97.20 E-value=0.00029 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+|+++|.|||||||+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.20 E-value=0.00031 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.++++|++|+|||||++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999997653
No 460
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.19 E-value=0.00031 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....-|+|.|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999999975
No 461
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.18 E-value=0.00062 Score=45.03 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.....+++.|++|+|||++++.+.+.-.
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3466799999999999999999987654
No 462
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.17 E-value=0.00036 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
...|+++|++||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999997
No 463
>PRK06547 hypothetical protein; Provisional
Probab=97.17 E-value=0.00065 Score=47.15 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
......|+|.|++||||||+.+.|...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 466778889999999999999999754
No 464
>PRK08233 hypothetical protein; Provisional
Probab=97.17 E-value=0.00038 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-|+|.|.+||||||+++.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 466889999999999999999753
No 465
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.16 E-value=0.00031 Score=48.91 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998664
No 466
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.16 E-value=0.00047 Score=52.55 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=29.0
Q ss_pred hHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhc
Q 030193 4 SFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+.+.+........+.|++-|++|+||||+++.+..
T Consensus 7 ~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~ 42 (325)
T PF07693_consen 7 ALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE 42 (325)
T ss_pred HHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566655557899999999999999999999854
No 467
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.16 E-value=0.0092 Score=41.24 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=41.9
Q ss_pred EEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 62 ~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+.++|+|+..... ....+..+|.+++++++. ..++......+ +.+... ......+|+|+.|...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~-~~s~~~~~~~~-~~~~~~--~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPE-ISSLRDADRVK-GLLEAL--GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCC-cchHHHHHHHH-HHHHHc--CCceEEEEEeCCcccc
Confidence 79999999864432 334457899999999886 34455444433 222221 2346779999998654
No 468
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.16 E-value=0.00038 Score=50.70 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...++++|+|++|||||+++..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999888754
No 469
>PRK01889 GTPase RsgA; Reviewed
Probab=97.16 E-value=0.00053 Score=53.12 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-+++++|.+|+|||||+|.+.+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhc
Confidence 4589999999999999999998754
No 470
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.15 E-value=0.00052 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=20.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhh
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
...+-|+|.|++||||||+++.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 567889999999999999998764
No 471
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.15 E-value=0.0003 Score=50.80 Aligned_cols=21 Identities=33% Similarity=0.235 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|.|++|||||||++.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 472
>PRK14531 adenylate kinase; Provisional
Probab=97.14 E-value=0.0004 Score=48.67 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+|+++|+|||||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 473
>PRK13949 shikimate kinase; Provisional
Probab=97.12 E-value=0.00039 Score=48.12 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
+|+++|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 474
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.12 E-value=0.00041 Score=48.23 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++|+|++|+|||||+|-+.+=.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc
Confidence 45578999999999999999997644
No 475
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.12 E-value=0.00065 Score=52.26 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
+.+.+|+|.|++||||||+++++++.-
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHccc
Confidence 568899999999999999999998754
No 476
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.0037 Score=49.00 Aligned_cols=110 Identities=25% Similarity=0.217 Sum_probs=65.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC------Cc-----ccccC-----------cccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~------~~-----~~~~~-----------t~~~~~~~~----------------- 56 (181)
..-.|+++|-.|+||||.+-.|... .+ ..+.| ..+..++..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 4567999999999999998777431 10 01122 122222221
Q ss_pred EECCEEEEEEEcCCCCCcccc----c--ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 57 EYKNISFTVWDVGGQDKIRPL----W--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
....+.+.|+||+|....... . -.-.-+.|-+++|+|+.--+.-.+..+.|.+.+.. .-+|+||.|.
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKlDG 251 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKLDG 251 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEcccC
Confidence 113478999999995332211 1 11224689999999997554444555555554432 2477888886
Q ss_pred CC
Q 030193 131 PN 132 (181)
Q Consensus 131 ~~ 132 (181)
..
T Consensus 252 da 253 (451)
T COG0541 252 DA 253 (451)
T ss_pred CC
Confidence 53
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.11 E-value=0.00041 Score=44.07 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.5
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4568999999999999999986
No 478
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.11 E-value=0.0004 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.|+++|++||||||+++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998753
No 479
>PRK14532 adenylate kinase; Provisional
Probab=97.11 E-value=0.00042 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+|+++|+|||||||+..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999753
No 480
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.10 E-value=0.00038 Score=48.46 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=16.7
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....-.++|.|++|+|||+|++++..
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35567789999999999999998854
No 481
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00043 Score=47.47 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030193 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~ 38 (181)
.+|+|.|.||+||||++++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999997
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.08 E-value=0.00048 Score=45.88 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.|+++|++|+|||+++..+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988643
No 483
>PRK05439 pantothenate kinase; Provisional
Probab=97.08 E-value=0.00061 Score=51.61 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=25.1
Q ss_pred HHHhhhccccceEEEEcCCCCChHHHHhhhhc
Q 030193 8 LFSKLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
++........+-|+|.|++||||||+++.|..
T Consensus 77 fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 77 FLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33333446778899999999999999988864
No 484
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00045 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.=-|+++|++|+|||||++++.+
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc
Confidence 34689999999999999999976
No 485
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0004 Score=49.42 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.9
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030193 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~ 38 (181)
-+++||+|||||||++++-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 3799999999999998883
No 486
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.05 E-value=0.00048 Score=48.10 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+++|+|||||||++..+...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
No 487
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.05 E-value=0.0005 Score=47.95 Aligned_cols=28 Identities=36% Similarity=0.284 Sum_probs=23.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
...-.++++|+.|+|||||++.+.+-..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3455789999999999999999988653
No 488
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.03 E-value=0.00049 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHhhhhcCC
Q 030193 20 ILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~~ 41 (181)
|+|+|++||||||+++.+.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887644
No 489
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.03 E-value=0.0005 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++++||.|||||||++++.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34568999999999999999976
No 490
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.03 E-value=0.00061 Score=48.70 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
....-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35566789999999999999999754
No 491
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.03 E-value=0.00046 Score=48.57 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+|+|+|+|||||||++..|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 492
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.02 E-value=0.00057 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999998864
No 493
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.01 E-value=0.00057 Score=48.34 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030193 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~ 39 (181)
|+|.|++|||||||.+.|..
T Consensus 2 IgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998843
No 494
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.01 E-value=0.00068 Score=48.24 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..--|+++|++|||||||++.+.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35568999999999999999998753
No 495
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.01 E-value=0.0006 Score=49.00 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999999864
No 496
>PRK06696 uridine kinase; Validated
Probab=97.00 E-value=0.001 Score=48.11 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.8
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhc
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+-|+|-|.+|||||||.+.|..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999988864
No 497
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00062 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.. .++++|+.|+|||||++.+.+-.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 35 88999999999999999998854
No 498
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.99 E-value=0.00059 Score=48.01 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
..=.++++|+.|+|||||++.+.+...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344689999999999999999988653
No 499
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.00064 Score=49.52 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.98 E-value=0.00065 Score=48.59 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=22.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999865
Done!