Query 030193
Match_columns 181
No_of_seqs 115 out of 1835
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 16:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x77_A ADP-ribosylation factor 100.0 5.9E-38 2E-42 219.9 20.4 180 1-180 3-185 (189)
2 1moz_A ARL1, ADP-ribosylation 100.0 9.5E-38 3.2E-42 217.6 21.0 180 1-180 1-181 (183)
3 1zj6_A ADP-ribosylation factor 100.0 9.8E-38 3.4E-42 218.5 20.7 178 1-179 1-178 (187)
4 1ksh_A ARF-like protein 2; sma 100.0 1.1E-36 3.7E-41 212.9 21.3 178 1-180 3-181 (186)
5 2b6h_A ADP-ribosylation factor 100.0 5.1E-37 1.7E-41 216.0 17.4 174 7-180 19-192 (192)
6 1upt_A ARL1, ADP-ribosylation 100.0 1.5E-35 5E-40 204.2 22.2 166 15-180 5-170 (171)
7 1r8s_A ADP-ribosylation factor 100.0 4E-36 1.4E-40 205.8 18.9 163 18-180 1-163 (164)
8 1fzq_A ADP-ribosylation factor 100.0 4.1E-36 1.4E-40 209.5 17.3 171 9-179 6-178 (181)
9 1m2o_B GTP-binding protein SAR 100.0 7.9E-35 2.7E-39 204.4 21.1 162 15-176 21-189 (190)
10 2h17_A ADP-ribosylation factor 100.0 4.9E-35 1.7E-39 203.9 18.9 163 14-176 18-180 (181)
11 1zd9_A ADP-ribosylation factor 100.0 7.1E-35 2.4E-39 204.2 18.7 165 15-179 20-185 (188)
12 4bas_A ADP-ribosylation factor 100.0 5.8E-35 2E-39 206.0 17.6 169 11-179 11-189 (199)
13 4dkx_A RAS-related protein RAB 100.0 2.1E-36 7.3E-41 216.2 9.9 160 14-179 10-176 (216)
14 1f6b_A SAR1; gtpases, N-termin 100.0 1.9E-34 6.5E-39 203.8 19.7 165 13-177 21-197 (198)
15 2h57_A ADP-ribosylation factor 100.0 5.1E-34 1.7E-38 200.1 19.8 165 15-179 19-187 (190)
16 3o47_A ADP-ribosylation factor 100.0 5.6E-34 1.9E-38 215.6 19.0 167 14-180 162-328 (329)
17 3lvq_E ARF-GAP with SH3 domain 100.0 2.6E-32 8.8E-37 216.9 21.1 166 15-180 320-485 (497)
18 3q72_A GTP-binding protein RAD 100.0 8.3E-33 2.8E-37 189.6 10.6 159 17-180 2-165 (166)
19 3oes_A GTPase rhebl1; small GT 100.0 1.9E-32 6.5E-37 193.8 11.0 166 10-180 17-188 (201)
20 1ek0_A Protein (GTP-binding pr 100.0 2.3E-32 7.9E-37 187.7 10.3 163 17-180 3-170 (170)
21 3t5g_A GTP-binding protein RHE 100.0 6.6E-32 2.2E-36 187.7 12.4 161 14-179 3-169 (181)
22 3ihw_A Centg3; RAS, centaurin, 100.0 7.9E-31 2.7E-35 183.2 16.3 157 13-179 16-180 (184)
23 2nzj_A GTP-binding protein REM 100.0 4.6E-31 1.6E-35 182.2 14.3 160 15-179 2-169 (175)
24 3q3j_B RHO-related GTP-binding 100.0 4.4E-31 1.5E-35 188.6 13.9 162 12-179 22-203 (214)
25 1r2q_A RAS-related protein RAB 100.0 6.8E-31 2.3E-35 180.3 14.2 159 15-179 4-169 (170)
26 1c1y_A RAS-related protein RAP 100.0 1.8E-31 6.1E-36 182.9 11.2 158 16-178 2-166 (167)
27 1u8z_A RAS-related protein RAL 100.0 5.5E-32 1.9E-36 185.3 8.6 160 16-180 3-168 (168)
28 2fu5_C RAS-related protein RAB 100.0 7.8E-32 2.7E-36 187.6 9.4 159 15-179 6-171 (183)
29 2fn4_A P23, RAS-related protei 100.0 1.6E-31 5.4E-36 185.4 10.8 162 13-179 5-172 (181)
30 3kkq_A RAS-related protein M-R 100.0 2.5E-31 8.5E-36 185.1 11.7 161 14-179 15-182 (183)
31 3t1o_A Gliding protein MGLA; G 100.0 6.2E-31 2.1E-35 184.8 13.8 160 13-179 10-192 (198)
32 2gf9_A RAS-related protein RAB 100.0 4.9E-31 1.7E-35 184.7 12.8 159 15-179 20-185 (189)
33 2efe_B Small GTP-binding prote 100.0 5.4E-31 1.9E-35 182.9 12.5 161 13-179 8-175 (181)
34 3reg_A RHO-like small GTPase; 100.0 1.7E-30 5.9E-35 182.6 15.2 160 15-180 21-189 (194)
35 3q85_A GTP-binding protein REM 100.0 2.8E-31 9.7E-36 182.4 10.9 159 17-180 2-168 (169)
36 1g16_A RAS-related protein SEC 100.0 9E-31 3.1E-35 179.8 13.4 159 16-180 2-166 (170)
37 2fh5_B SR-beta, signal recogni 100.0 2.7E-30 9.1E-35 184.3 16.3 163 15-177 5-214 (214)
38 3tw8_B RAS-related protein RAB 100.0 5.3E-31 1.8E-35 182.7 12.3 159 14-179 6-171 (181)
39 2hup_A RAS-related protein RAB 100.0 1.5E-30 5.3E-35 184.1 14.9 159 15-179 27-193 (201)
40 2g6b_A RAS-related protein RAB 100.0 2.1E-31 7.3E-36 184.8 10.3 161 14-180 7-175 (180)
41 3bc1_A RAS-related protein RAB 100.0 1.3E-30 4.6E-35 182.6 14.3 162 13-179 7-185 (195)
42 2p5s_A RAS and EF-hand domain 100.0 6.5E-32 2.2E-36 190.8 7.5 165 11-181 22-199 (199)
43 2hxs_A RAB-26, RAS-related pro 100.0 3.2E-31 1.1E-35 183.6 10.6 161 15-180 4-174 (178)
44 3tkl_A RAS-related protein RAB 100.0 7.1E-31 2.4E-35 184.6 12.4 160 15-180 14-180 (196)
45 2fg5_A RAB-22B, RAS-related pr 100.0 5.5E-30 1.9E-34 179.9 16.8 161 13-179 19-186 (192)
46 1x3s_A RAS-related protein RAB 100.0 5E-30 1.7E-34 180.0 16.5 160 15-179 13-178 (195)
47 1wms_A RAB-9, RAB9, RAS-relate 100.0 3E-30 1E-34 178.5 15.2 163 14-180 4-175 (177)
48 2bme_A RAB4A, RAS-related prot 100.0 1.9E-30 6.5E-35 181.0 14.2 159 15-179 8-173 (186)
49 1z0f_A RAB14, member RAS oncog 100.0 3.9E-31 1.3E-35 183.1 10.6 161 13-179 11-178 (179)
50 4dsu_A GTPase KRAS, isoform 2B 100.0 1.9E-30 6.7E-35 181.1 14.2 161 15-179 2-166 (189)
51 2ew1_A RAS-related protein RAB 100.0 4.6E-31 1.6E-35 186.9 11.0 159 15-179 24-189 (201)
52 2oil_A CATX-8, RAS-related pro 100.0 8.2E-31 2.8E-35 184.1 12.0 159 15-179 23-188 (193)
53 1z08_A RAS-related protein RAB 100.0 4.8E-30 1.6E-34 176.3 15.4 159 15-179 4-169 (170)
54 1z0j_A RAB-22, RAS-related pro 100.0 1.1E-30 3.8E-35 179.4 12.1 159 15-179 4-169 (170)
55 3cph_A RAS-related protein SEC 100.0 3.9E-30 1.3E-34 183.1 15.0 161 13-179 16-182 (213)
56 1z2a_A RAS-related protein RAB 100.0 1.7E-30 6E-35 178.1 12.7 159 15-180 3-168 (168)
57 3cbq_A GTP-binding protein REM 100.0 4.4E-31 1.5E-35 186.1 9.9 163 12-179 18-188 (195)
58 2iwr_A Centaurin gamma 1; ANK 100.0 2.6E-30 8.8E-35 179.2 13.6 156 15-179 5-169 (178)
59 2atx_A Small GTP binding prote 100.0 4.2E-30 1.4E-34 180.5 14.9 160 14-179 15-193 (194)
60 2atv_A RERG, RAS-like estrogen 100.0 4.8E-31 1.7E-35 185.8 9.9 165 9-179 20-191 (196)
61 2bcg_Y Protein YP2, GTP-bindin 100.0 1.8E-30 6.2E-35 184.1 12.9 159 15-179 6-171 (206)
62 2a5j_A RAS-related protein RAB 100.0 8.4E-31 2.9E-35 183.8 11.0 159 15-179 19-184 (191)
63 2bov_A RAla, RAS-related prote 100.0 8.7E-30 3E-34 180.3 15.9 164 11-179 8-177 (206)
64 1z06_A RAS-related protein RAB 100.0 5.4E-31 1.8E-35 184.5 9.5 162 13-179 16-188 (189)
65 2a9k_A RAS-related protein RAL 100.0 6.3E-30 2.2E-34 178.1 14.9 160 15-179 16-181 (187)
66 1zbd_A Rabphilin-3A; G protein 100.0 1.7E-30 5.7E-35 183.8 12.1 159 15-179 6-171 (203)
67 3bwd_D RAC-like GTP-binding pr 100.0 1.1E-30 3.7E-35 181.5 10.9 159 15-179 6-181 (182)
68 2fv8_A H6, RHO-related GTP-bin 100.0 9.9E-30 3.4E-34 180.6 16.0 164 15-179 23-200 (207)
69 4gzl_A RAS-related C3 botulinu 100.0 1.5E-30 5.1E-35 184.5 11.6 163 14-177 27-203 (204)
70 3dz8_A RAS-related protein RAB 100.0 1.3E-31 4.6E-36 187.9 6.0 160 15-180 21-187 (191)
71 1m7b_A RND3/RHOE small GTP-bin 100.0 2.1E-30 7.3E-35 180.8 12.1 160 15-180 5-184 (184)
72 3clv_A RAB5 protein, putative; 100.0 2.8E-30 9.7E-35 182.3 12.7 158 15-180 5-205 (208)
73 1kao_A RAP2A; GTP-binding prot 100.0 2.2E-30 7.6E-35 177.1 11.7 159 16-179 2-166 (167)
74 2y8e_A RAB-protein 6, GH09086P 100.0 9.7E-31 3.3E-35 181.1 10.0 159 15-179 12-177 (179)
75 2gco_A H9, RHO-related GTP-bin 100.0 1.4E-29 4.7E-34 179.1 16.1 166 13-179 21-200 (201)
76 1vg8_A RAS-related protein RAB 100.0 8.5E-30 2.9E-34 180.6 14.8 161 15-179 6-175 (207)
77 3cpj_B GTP-binding protein YPT 100.0 2.1E-30 7.2E-35 186.1 11.6 160 15-180 11-177 (223)
78 2il1_A RAB12; G-protein, GDP, 100.0 4.5E-30 1.5E-34 180.4 13.0 161 15-180 24-191 (192)
79 2f7s_A C25KG, RAS-related prot 100.0 3.3E-31 1.1E-35 189.3 7.3 160 15-179 23-199 (217)
80 2o52_A RAS-related protein RAB 100.0 2.7E-30 9.4E-35 182.6 11.9 159 15-179 23-188 (200)
81 2q3h_A RAS homolog gene family 100.0 1.4E-29 4.7E-34 178.9 15.3 161 13-179 16-195 (201)
82 4djt_A GTP-binding nuclear pro 100.0 2.1E-30 7.3E-35 185.2 10.8 160 15-179 9-175 (218)
83 3c5c_A RAS-like protein 12; GD 100.0 4E-31 1.4E-35 185.0 6.7 159 15-179 19-186 (187)
84 2j0v_A RAC-like GTP-binding pr 100.0 4.4E-30 1.5E-34 182.9 12.0 159 15-179 7-180 (212)
85 1mh1_A RAC1; GTP-binding, GTPa 100.0 4E-30 1.4E-34 179.1 11.5 164 15-179 3-180 (186)
86 2ce2_X GTPase HRAS; signaling 100.0 1.9E-29 6.5E-34 172.2 14.5 158 17-179 3-165 (166)
87 1gwn_A RHO-related GTP-binding 100.0 5E-30 1.7E-34 182.0 11.9 160 15-180 26-205 (205)
88 1ky3_A GTP-binding protein YPT 100.0 1.6E-29 5.3E-34 175.4 14.1 162 14-179 5-178 (182)
89 2j1l_A RHO-related GTP-binding 100.0 5.9E-30 2E-34 182.7 12.1 164 15-179 32-209 (214)
90 2erx_A GTP-binding protein DI- 100.0 8.3E-30 2.8E-34 175.2 11.7 160 16-180 2-168 (172)
91 3gj0_A GTP-binding nuclear pro 100.0 3.8E-30 1.3E-34 184.5 10.4 160 13-179 11-175 (221)
92 2g3y_A GTP-binding protein GEM 100.0 5.2E-30 1.8E-34 182.6 10.9 159 15-178 35-202 (211)
93 3l0i_B RAS-related protein RAB 100.0 4.9E-31 1.7E-35 186.2 5.4 157 15-180 31-197 (199)
94 3con_A GTPase NRAS; structural 100.0 4.5E-29 1.5E-33 174.7 15.4 160 15-179 19-183 (190)
95 3llu_A RAS-related GTP-binding 100.0 5.1E-30 1.7E-34 180.6 10.0 163 12-177 15-195 (196)
96 2gf0_A GTP-binding protein DI- 100.0 2.3E-29 7.9E-34 177.2 12.8 160 15-179 6-171 (199)
97 2yc2_C IFT27, small RAB-relate 100.0 7.8E-30 2.7E-34 180.7 10.2 160 15-179 18-192 (208)
98 2lkc_A Translation initiation 100.0 7.6E-28 2.6E-32 166.5 18.0 161 13-179 4-171 (178)
99 2cjw_A GTP-binding protein GEM 100.0 5E-29 1.7E-33 175.2 10.9 159 15-178 4-171 (192)
100 2zej_A Dardarin, leucine-rich 100.0 1.8E-29 6.2E-34 176.2 8.0 161 17-179 2-178 (184)
101 3th5_A RAS-related C3 botulinu 99.9 9E-31 3.1E-35 185.5 0.0 163 14-177 27-203 (204)
102 3r7w_B Gtpase2, GTP-binding pr 100.0 9.9E-29 3.4E-33 184.6 9.2 157 19-179 1-174 (331)
103 2qu8_A Putative nucleolar GTP- 100.0 6.4E-28 2.2E-32 173.7 12.9 168 10-179 20-205 (228)
104 1svi_A GTP-binding protein YSX 99.9 8.3E-28 2.8E-32 168.8 10.3 157 12-178 18-194 (195)
105 2wji_A Ferrous iron transport 99.9 6.8E-27 2.3E-31 160.4 14.5 147 17-178 3-164 (165)
106 2dyk_A GTP-binding protein; GT 99.9 1.9E-27 6.7E-32 161.8 11.2 147 18-177 2-160 (161)
107 2gj8_A MNME, tRNA modification 99.9 2.4E-27 8.3E-32 163.8 11.7 152 15-178 2-165 (172)
108 3pqc_A Probable GTP-binding pr 99.9 1.6E-27 5.5E-32 167.0 9.0 162 12-179 18-194 (195)
109 2wkq_A NPH1-1, RAS-related C3 99.9 1.3E-26 4.5E-31 175.0 14.2 165 15-180 153-331 (332)
110 3c5h_A Glucocorticoid receptor 99.9 1.3E-27 4.5E-32 174.9 8.1 160 15-178 17-254 (255)
111 3r7w_A Gtpase1, GTP-binding pr 99.9 5.2E-27 1.8E-31 176.0 11.2 161 16-178 2-180 (307)
112 2cxx_A Probable GTP-binding pr 99.9 6.2E-28 2.1E-32 168.6 5.7 160 18-180 2-185 (190)
113 4dhe_A Probable GTP-binding pr 99.9 2.5E-27 8.7E-32 169.7 6.7 164 11-179 23-211 (223)
114 2wjg_A FEOB, ferrous iron tran 99.9 1.1E-25 3.8E-30 157.1 13.6 151 15-180 5-170 (188)
115 2f9l_A RAB11B, member RAS onco 99.9 1.9E-26 6.6E-31 162.6 9.6 159 15-179 3-168 (199)
116 3a1s_A Iron(II) transport prot 99.9 3.9E-25 1.3E-29 161.9 15.1 149 15-178 3-166 (258)
117 3iev_A GTP-binding protein ERA 99.9 4.3E-25 1.5E-29 165.6 14.5 161 13-179 6-182 (308)
118 1wf3_A GTP-binding protein; GT 99.9 4.2E-25 1.4E-29 165.0 14.2 154 16-178 6-172 (301)
119 3i8s_A Ferrous iron transport 99.9 1.8E-25 6.3E-30 165.0 10.0 148 16-178 2-168 (274)
120 3iby_A Ferrous iron transport 99.9 3E-25 1E-29 162.3 11.0 144 18-176 2-164 (256)
121 1oix_A RAS-related protein RAB 99.9 5.1E-25 1.8E-29 154.5 11.2 157 15-177 27-190 (191)
122 3b1v_A Ferrous iron uptake tra 99.9 9.5E-25 3.2E-29 160.8 11.8 147 16-178 2-163 (272)
123 3gee_A MNME, tRNA modification 99.9 3E-24 1E-28 169.0 15.0 153 15-178 231-397 (476)
124 2hjg_A GTP-binding protein ENG 99.9 2.1E-25 7.3E-30 174.5 8.2 159 16-179 174-349 (436)
125 3dpu_A RAB family protein; roc 99.9 1.1E-24 3.8E-29 174.4 10.9 155 15-179 39-208 (535)
126 3k53_A Ferrous iron transport 99.9 8.2E-24 2.8E-28 156.0 14.6 150 16-179 2-166 (271)
127 1nrj_B SR-beta, signal recogni 99.9 3.6E-26 1.2E-30 163.2 1.0 117 14-135 9-137 (218)
128 3sjy_A Translation initiation 99.9 3E-24 1E-28 166.5 10.4 160 14-178 5-191 (403)
129 3qq5_A Small GTP-binding prote 99.9 4.8E-25 1.6E-29 171.0 5.8 154 13-178 30-195 (423)
130 1xzp_A Probable tRNA modificat 99.9 8E-24 2.8E-28 166.7 12.0 151 15-178 241-404 (482)
131 4dcu_A GTP-binding protein ENG 99.9 1.6E-24 5.5E-29 170.4 8.0 160 15-179 193-369 (456)
132 2e87_A Hypothetical protein PH 99.9 3.6E-23 1.2E-27 158.1 15.0 158 15-179 165-336 (357)
133 1cip_A Protein (guanine nucleo 99.9 1.5E-23 5.2E-28 159.3 12.2 133 47-179 179-344 (353)
134 1mky_A Probable GTP-binding pr 99.9 7.4E-24 2.5E-28 165.9 10.5 150 18-178 2-165 (439)
135 3ohm_A Guanine nucleotide-bind 99.9 7.4E-23 2.5E-27 153.6 15.4 134 47-180 153-319 (327)
136 2hjg_A GTP-binding protein ENG 99.9 2.7E-24 9.1E-29 168.3 7.8 149 17-178 3-164 (436)
137 1lnz_A SPO0B-associated GTP-bi 99.9 8.6E-24 3E-28 160.1 9.9 156 18-179 159-330 (342)
138 1zcb_A G alpha I/13; GTP-bindi 99.9 7.7E-23 2.6E-27 155.9 14.7 132 48-179 188-353 (362)
139 3geh_A MNME, tRNA modification 99.9 2.7E-23 9.2E-28 163.0 12.3 151 15-179 222-384 (462)
140 3izy_P Translation initiation 99.9 3.2E-24 1.1E-28 170.3 6.5 158 16-178 3-167 (537)
141 1ega_A Protein (GTP-binding pr 99.9 1.5E-22 5.1E-27 151.3 14.4 153 16-178 7-174 (301)
142 3tr5_A RF-3, peptide chain rel 99.9 1.6E-22 5.3E-27 161.0 14.5 114 15-133 11-149 (528)
143 1s0u_A EIF-2-gamma, translatio 99.9 1.8E-22 6.1E-27 156.7 14.2 159 15-178 6-197 (408)
144 2ged_A SR-beta, signal recogni 99.9 1.5E-23 5.1E-28 146.8 6.9 125 14-143 45-181 (193)
145 1mky_A Probable GTP-binding pr 99.9 1.2E-22 4.1E-27 159.1 12.5 159 16-179 179-355 (439)
146 1g7s_A Translation initiation 99.9 1.4E-22 4.8E-27 163.1 12.9 156 15-178 3-217 (594)
147 1wb1_A Translation elongation 99.9 3.1E-23 1.1E-27 163.8 8.8 157 15-178 17-188 (482)
148 4dcu_A GTP-binding protein ENG 99.9 1.1E-23 3.9E-28 165.6 5.6 152 15-178 21-184 (456)
149 3cb4_D GTP-binding protein LEP 99.9 4.7E-22 1.6E-26 160.0 14.2 154 16-179 3-182 (599)
150 2xtp_A GTPase IMAP family memb 99.9 4.6E-22 1.6E-26 145.7 12.9 160 14-179 19-208 (260)
151 2elf_A Protein translation elo 99.9 1.9E-22 6.6E-27 154.4 11.0 146 19-178 23-179 (370)
152 4fid_A G protein alpha subunit 99.9 2.1E-22 7.2E-27 151.6 10.9 132 47-178 147-327 (340)
153 2ywe_A GTP-binding protein LEP 99.9 8.6E-22 2.9E-26 158.3 15.0 154 15-179 4-184 (600)
154 1kk1_A EIF2gamma; initiation o 99.9 1.6E-22 5.4E-27 157.1 10.4 160 14-178 7-199 (410)
155 1jny_A EF-1-alpha, elongation 99.9 3.8E-23 1.3E-27 161.7 6.4 150 15-169 4-203 (435)
156 1zo1_I IF2, translation initia 99.9 3.3E-23 1.1E-27 163.4 5.7 155 15-175 2-163 (501)
157 3j2k_7 ERF3, eukaryotic polype 99.9 3.4E-22 1.2E-26 156.3 11.4 153 15-171 15-217 (439)
158 2qtf_A Protein HFLX, GTP-bindi 99.9 6.8E-22 2.3E-26 151.0 12.7 156 17-179 178-354 (364)
159 2xtz_A Guanine nucleotide-bind 99.9 1.2E-22 4.1E-27 154.3 8.2 121 59-179 181-345 (354)
160 3lxw_A GTPase IMAP family memb 99.9 5.6E-22 1.9E-26 144.3 11.1 163 15-179 19-208 (247)
161 2c78_A Elongation factor TU-A; 99.9 2.3E-22 7.8E-27 156.0 9.5 159 15-178 9-211 (405)
162 1zun_B Sulfate adenylate trans 99.9 1.7E-21 5.7E-26 152.4 13.5 157 9-169 16-214 (434)
163 3p26_A Elongation factor 1 alp 99.9 9.2E-22 3.2E-26 155.7 11.7 152 15-168 31-227 (483)
164 1d2e_A Elongation factor TU (E 99.9 3.9E-22 1.3E-26 154.3 8.7 157 17-178 3-194 (397)
165 3t5d_A Septin-7; GTP-binding p 99.9 1.7E-22 5.8E-27 149.2 5.7 157 15-177 6-202 (274)
166 3izq_1 HBS1P, elongation facto 99.9 2.9E-22 1E-26 162.0 7.4 152 15-169 165-362 (611)
167 2h5e_A Peptide chain release f 99.9 2.6E-20 8.9E-25 148.4 16.2 115 15-134 11-150 (529)
168 1r5b_A Eukaryotic peptide chai 99.9 4E-22 1.4E-26 157.0 5.5 154 13-170 39-243 (467)
169 3lxx_A GTPase IMAP family memb 99.9 8.3E-22 2.8E-26 142.7 6.7 165 13-179 25-214 (239)
170 3mca_A HBS1, elongation factor 99.8 6.1E-23 2.1E-27 165.5 0.1 158 15-176 175-394 (592)
171 2aka_B Dynamin-1; fusion prote 99.8 8.7E-21 3E-25 141.4 11.0 156 15-175 24-249 (299)
172 1f60_A Elongation factor EEF1A 99.8 3.9E-21 1.3E-25 151.1 9.3 151 15-169 5-202 (458)
173 1dar_A EF-G, elongation factor 99.8 6.2E-20 2.1E-24 150.4 15.5 114 15-133 10-144 (691)
174 2qag_A Septin-2, protein NEDD5 99.8 7.3E-22 2.5E-26 150.9 3.3 158 15-179 35-233 (361)
175 3def_A T7I23.11 protein; chlor 99.8 4.1E-20 1.4E-24 135.6 11.8 117 15-132 34-165 (262)
176 3avx_A Elongation factor TS, e 99.8 2E-20 6.8E-25 157.7 10.0 159 15-178 294-485 (1289)
177 2dy1_A Elongation factor G; tr 99.8 4.3E-19 1.5E-23 145.0 14.4 112 15-131 7-139 (665)
178 2xex_A Elongation factor G; GT 99.8 9.6E-19 3.3E-23 143.5 16.4 115 14-133 7-142 (693)
179 1jwy_B Dynamin A GTPase domain 99.8 1.1E-19 3.9E-24 136.4 10.0 160 15-178 22-261 (315)
180 1pui_A ENGB, probable GTP-bind 99.8 2.3E-19 8E-24 127.1 9.6 157 13-178 22-198 (210)
181 2rdo_7 EF-G, elongation factor 99.8 2.1E-18 7.3E-23 141.6 16.3 114 15-133 8-149 (704)
182 1azs_C GS-alpha; complex (lyas 99.8 1.1E-19 3.9E-24 139.6 7.6 132 48-179 204-385 (402)
183 2j69_A Bacterial dynamin-like 99.8 3.8E-19 1.3E-23 145.9 10.9 160 15-178 67-324 (695)
184 1h65_A Chloroplast outer envel 99.8 9.1E-19 3.1E-23 128.9 11.2 118 15-133 37-169 (270)
185 3vqt_A RF-3, peptide chain rel 99.8 5.8E-18 2E-22 135.5 16.3 114 15-133 29-167 (548)
186 3t34_A Dynamin-related protein 99.8 5.1E-19 1.7E-23 135.3 6.3 150 16-172 33-254 (360)
187 1udx_A The GTP-binding protein 99.8 6.1E-18 2.1E-22 130.9 11.5 156 18-179 158-325 (416)
188 3l82_B F-box only protein 4; T 99.8 4.5E-18 1.5E-22 118.7 9.6 173 6-180 5-224 (227)
189 2x2e_A Dynamin-1; nitration, h 99.8 1.4E-18 4.7E-23 132.6 7.1 154 15-175 29-254 (353)
190 2qnr_A Septin-2, protein NEDD5 99.7 6.8E-19 2.3E-23 131.4 3.8 158 15-179 16-214 (301)
191 1wxq_A GTP-binding protein; st 99.7 8E-18 2.7E-22 129.8 6.2 80 18-97 1-114 (397)
192 1n0u_A EF-2, elongation factor 99.7 6.1E-18 2.1E-22 141.3 5.7 112 15-131 17-163 (842)
193 1u0l_A Probable GTPase ENGC; p 99.7 2E-17 6.8E-22 123.5 7.2 131 32-175 32-169 (301)
194 2qpt_A EH domain-containing pr 99.7 1.3E-17 4.5E-22 133.5 6.1 122 15-140 63-240 (550)
195 2qag_C Septin-7; cell cycle, c 99.7 1.8E-17 6.2E-22 128.3 6.4 157 15-177 29-225 (418)
196 2wsm_A Hydrogenase expression/ 99.7 7.6E-17 2.6E-21 115.0 8.8 151 14-179 27-214 (221)
197 3p32_A Probable GTPase RV1496/ 99.7 3.6E-17 1.2E-21 124.8 7.4 152 15-178 77-283 (355)
198 2www_A Methylmalonic aciduria 99.7 1.5E-16 5.2E-21 121.0 9.7 149 17-177 74-277 (349)
199 3j25_A Tetracycline resistance 99.7 3.3E-17 1.1E-21 133.4 5.8 158 17-179 2-239 (638)
200 4fn5_A EF-G 1, elongation fact 99.6 7.3E-15 2.5E-19 121.0 15.1 113 15-132 11-151 (709)
201 4a9a_A Ribosome-interacting GT 99.6 1.1E-14 3.6E-19 111.2 13.8 112 17-130 72-194 (376)
202 3l2o_B F-box only protein 4; s 99.6 4.6E-16 1.6E-20 113.5 6.0 111 68-180 194-309 (312)
203 2p67_A LAO/AO transport system 99.6 8E-16 2.7E-20 116.7 7.4 152 15-178 54-260 (341)
204 3zvr_A Dynamin-1; hydrolase, D 99.6 4.4E-15 1.5E-19 121.9 11.0 156 15-175 49-274 (772)
205 1yrb_A ATP(GTP)binding protein 99.6 1.6E-16 5.5E-21 116.1 1.6 160 15-178 12-256 (262)
206 1jal_A YCHF protein; nucleotid 99.6 4.1E-14 1.4E-18 107.5 14.5 80 17-96 2-108 (363)
207 2hf9_A Probable hydrogenase ni 99.5 2.2E-14 7.5E-19 102.5 8.3 150 15-179 36-224 (226)
208 2dby_A GTP-binding protein; GD 99.5 2.2E-13 7.7E-18 103.9 10.7 79 18-96 2-111 (368)
209 2qm8_A GTPase/ATPase; G protei 99.5 2.7E-13 9.3E-18 102.6 9.6 152 15-178 53-260 (337)
210 2yv5_A YJEQ protein; hydrolase 99.3 1.8E-12 6.3E-17 96.7 7.2 96 71-175 66-165 (302)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 1.7E-12 5.8E-17 99.6 5.3 84 15-98 20-130 (396)
212 2j37_W Signal recognition part 99.1 1.6E-10 5.4E-15 91.5 7.1 153 16-176 100-310 (504)
213 2qag_B Septin-6, protein NEDD5 99.1 1.6E-10 5.6E-15 89.4 5.9 137 17-160 42-217 (427)
214 3h2y_A GTPase family protein; 99.0 8.9E-11 3E-15 89.8 3.0 100 70-177 55-158 (368)
215 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.2E-09 3.9E-14 84.0 8.9 82 15-96 18-127 (392)
216 3ec1_A YQEH GTPase; atnos1, at 99.0 1.1E-10 3.8E-15 89.3 3.1 113 16-134 161-290 (369)
217 3ec1_A YQEH GTPase; atnos1, at 99.0 1.2E-10 4E-15 89.2 2.7 102 69-178 56-161 (369)
218 3sop_A Neuronal-specific septi 99.0 1.1E-09 3.6E-14 80.4 7.0 114 17-135 2-157 (270)
219 3h2y_A GTPase family protein; 98.9 9.7E-10 3.3E-14 84.1 4.7 115 16-136 159-291 (368)
220 1tq4_A IIGP1, interferon-induc 98.9 1.2E-08 4.2E-13 78.9 9.9 155 16-178 68-252 (413)
221 1puj_A YLQF, conserved hypothe 98.8 2.3E-09 7.7E-14 79.2 3.6 102 65-178 3-105 (282)
222 1puj_A YLQF, conserved hypothe 98.7 2.3E-08 7.7E-13 73.8 5.5 55 15-72 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.7 5.4E-09 1.8E-13 76.3 1.5 55 18-73 100-156 (262)
224 1f5n_A Interferon-induced guan 98.4 4.7E-07 1.6E-11 73.0 6.4 60 14-73 35-103 (592)
225 3dm5_A SRP54, signal recogniti 98.4 1.9E-06 6.4E-11 67.1 8.8 110 17-133 100-254 (443)
226 2v3c_C SRP54, signal recogniti 98.3 5E-07 1.7E-11 70.4 5.3 108 17-132 99-252 (432)
227 3szr_A Interferon-induced GTP- 98.3 4.7E-07 1.6E-11 73.5 5.4 24 18-41 46-69 (608)
228 3cnl_A YLQF, putative uncharac 98.2 1.1E-07 3.6E-12 69.5 -0.7 93 68-175 4-97 (262)
229 1t9h_A YLOQ, probable GTPase E 98.2 3.1E-07 1.1E-11 68.4 1.7 87 78-172 80-170 (307)
230 2rcn_A Probable GTPase ENGC; Y 98.0 1.4E-05 4.9E-10 60.6 6.9 83 81-173 127-213 (358)
231 3kl4_A SRP54, signal recogniti 97.9 3.8E-06 1.3E-10 65.4 2.6 109 17-132 97-252 (433)
232 1j8m_F SRP54, signal recogniti 97.9 3.7E-05 1.3E-09 57.0 7.3 108 17-132 98-253 (297)
233 1bif_A 6-phosphofructo-2-kinas 97.9 5.5E-07 1.9E-11 71.0 -3.2 110 14-128 36-159 (469)
234 3q5d_A Atlastin-1; G protein, 97.8 2.9E-05 1E-09 60.6 5.1 25 16-40 66-90 (447)
235 2bbw_A Adenylate kinase 4, AK4 97.6 3.4E-05 1.2E-09 55.4 3.3 32 7-38 17-48 (246)
236 1ye8_A Protein THEP1, hypothet 97.6 3.6E-05 1.2E-09 52.8 3.0 22 19-40 2-23 (178)
237 2xxa_A Signal recognition part 97.6 0.00022 7.6E-09 55.6 7.7 109 17-133 100-255 (433)
238 1kgd_A CASK, peripheral plasma 97.5 4E-05 1.4E-09 52.5 2.7 24 17-40 5-28 (180)
239 1lvg_A Guanylate kinase, GMP k 97.5 4.9E-05 1.7E-09 52.9 2.7 23 17-39 4-26 (198)
240 3tr0_A Guanylate kinase, GMP k 97.4 6.9E-05 2.4E-09 52.0 2.7 24 17-40 7-30 (205)
241 3a00_A Guanylate kinase, GMP k 97.4 7.2E-05 2.5E-09 51.4 2.7 23 19-41 3-25 (186)
242 3ney_A 55 kDa erythrocyte memb 97.4 9.8E-05 3.3E-09 51.4 3.3 29 12-40 14-42 (197)
243 3c8u_A Fructokinase; YP_612366 97.4 8.6E-05 2.9E-09 52.0 3.0 26 15-40 20-45 (208)
244 3tau_A Guanylate kinase, GMP k 97.4 0.0001 3.5E-09 51.6 3.3 27 15-41 6-32 (208)
245 1zp6_A Hypothetical protein AT 97.4 0.0001 3.6E-09 50.5 3.2 25 16-40 8-32 (191)
246 1znw_A Guanylate kinase, GMP k 97.4 8.7E-05 3E-09 51.9 2.7 27 15-41 18-44 (207)
247 3lnc_A Guanylate kinase, GMP k 97.4 7.1E-05 2.4E-09 53.2 2.3 25 16-40 26-51 (231)
248 1z6g_A Guanylate kinase; struc 97.4 9.4E-05 3.2E-09 52.2 2.7 26 16-41 22-47 (218)
249 1s96_A Guanylate kinase, GMP k 97.3 9.9E-05 3.4E-09 52.3 2.7 26 16-41 15-40 (219)
250 4gp7_A Metallophosphoesterase; 97.3 9.8E-05 3.4E-09 50.1 2.5 24 16-39 8-31 (171)
251 3lw7_A Adenylate kinase relate 97.3 0.00015 5.1E-09 48.8 3.0 20 18-37 2-21 (179)
252 3ec2_A DNA replication protein 97.3 0.00018 6.3E-09 49.0 3.4 27 15-41 36-62 (180)
253 3tif_A Uncharacterized ABC tra 97.3 0.00014 4.8E-09 52.0 2.8 27 16-42 30-56 (235)
254 3asz_A Uridine kinase; cytidin 97.3 0.00016 5.4E-09 50.5 3.0 26 15-40 4-29 (211)
255 2j41_A Guanylate kinase; GMP, 97.3 0.00017 5.9E-09 50.0 3.2 26 16-41 5-30 (207)
256 1kag_A SKI, shikimate kinase I 97.3 0.00015 5.2E-09 48.9 2.8 23 18-40 5-27 (173)
257 2cdn_A Adenylate kinase; phosp 97.2 0.00019 6.5E-09 49.8 3.3 25 15-39 18-42 (201)
258 1ex7_A Guanylate kinase; subst 97.2 0.00017 5.8E-09 49.7 2.8 21 20-40 4-24 (186)
259 2bwj_A Adenylate kinase 5; pho 97.2 0.00023 7.7E-09 49.1 3.5 23 17-39 12-34 (199)
260 2qor_A Guanylate kinase; phosp 97.2 0.00017 5.9E-09 50.2 2.9 25 16-40 11-35 (204)
261 2rcn_A Probable GTPase ENGC; Y 97.2 0.00016 5.6E-09 54.8 2.9 26 17-42 215-240 (358)
262 3t61_A Gluconokinase; PSI-biol 97.2 0.0002 6.8E-09 49.7 3.0 24 16-39 17-40 (202)
263 2pcj_A ABC transporter, lipopr 97.2 0.00018 6E-09 51.1 2.7 25 17-41 30-54 (224)
264 1knq_A Gluconate kinase; ALFA/ 97.2 0.00022 7.7E-09 48.2 3.2 24 16-39 7-30 (175)
265 1htw_A HI0065; nucleotide-bind 97.2 0.00019 6.5E-09 48.1 2.7 26 16-41 32-57 (158)
266 2bdt_A BH3686; alpha-beta prot 97.2 0.00018 6.3E-09 49.3 2.7 21 19-39 4-24 (189)
267 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.1E-09 48.1 2.9 21 19-39 3-23 (173)
268 4eun_A Thermoresistant glucoki 97.2 0.00024 8.2E-09 49.3 3.1 24 16-39 28-51 (200)
269 1ly1_A Polynucleotide kinase; 97.2 0.00025 8.4E-09 48.0 3.1 22 18-39 3-24 (181)
270 1cke_A CK, MSSA, protein (cyti 97.2 0.00024 8.2E-09 50.1 3.1 23 17-39 5-27 (227)
271 1jbk_A CLPB protein; beta barr 97.2 0.00048 1.6E-08 46.7 4.5 34 7-40 33-66 (195)
272 2onk_A Molybdate/tungstate ABC 97.2 0.00022 7.5E-09 51.2 2.9 24 18-41 25-48 (240)
273 3gfo_A Cobalt import ATP-bindi 97.1 0.00022 7.5E-09 52.2 2.8 25 17-41 34-58 (275)
274 1b0u_A Histidine permease; ABC 97.1 0.00023 7.9E-09 51.7 2.8 25 17-41 32-56 (262)
275 2cbz_A Multidrug resistance-as 97.1 0.00024 8.1E-09 50.9 2.8 25 17-41 31-55 (237)
276 1uf9_A TT1252 protein; P-loop, 97.1 0.00027 9.2E-09 48.9 3.1 26 15-40 6-31 (203)
277 1sgw_A Putative ABC transporte 97.1 0.00024 8.3E-09 50.0 2.8 25 17-41 35-59 (214)
278 3fb4_A Adenylate kinase; psych 97.1 0.00027 9.1E-09 49.5 3.0 22 18-39 1-22 (216)
279 2if2_A Dephospho-COA kinase; a 97.1 0.00026 8.9E-09 49.1 2.9 22 18-39 2-23 (204)
280 4g1u_C Hemin import ATP-bindin 97.1 0.00024 8.2E-09 51.8 2.8 26 16-41 36-61 (266)
281 1g6h_A High-affinity branched- 97.1 0.00025 8.4E-09 51.4 2.8 26 16-41 32-57 (257)
282 1y63_A LMAJ004144AAA protein; 97.1 0.00033 1.1E-08 47.9 3.3 26 15-40 8-33 (184)
283 3dl0_A Adenylate kinase; phosp 97.1 0.00029 9.9E-09 49.4 3.0 22 18-39 1-22 (216)
284 2ff7_A Alpha-hemolysin translo 97.1 0.00029 1E-08 50.7 3.1 25 17-41 35-59 (247)
285 2i3b_A HCR-ntpase, human cance 97.1 0.00025 8.6E-09 49.0 2.6 22 19-40 3-24 (189)
286 2pze_A Cystic fibrosis transme 97.1 0.00027 9.3E-09 50.3 2.8 25 17-41 34-58 (229)
287 1aky_A Adenylate kinase; ATP:A 97.1 0.00032 1.1E-08 49.4 3.2 24 16-39 3-26 (220)
288 2v9p_A Replication protein E1; 97.1 0.00027 9.2E-09 52.5 2.9 25 15-39 124-148 (305)
289 3uie_A Adenylyl-sulfate kinase 97.1 0.00036 1.2E-08 48.4 3.4 26 15-40 23-48 (200)
290 1mv5_A LMRA, multidrug resista 97.1 0.0003 1E-08 50.6 3.0 26 16-41 27-52 (243)
291 1t9h_A YLOQ, probable GTPase E 97.1 9.5E-05 3.2E-09 55.0 0.4 25 17-41 173-197 (307)
292 1jjv_A Dephospho-COA kinase; P 97.1 0.00031 1.1E-08 48.8 3.0 22 18-39 3-24 (206)
293 1kht_A Adenylate kinase; phosp 97.1 0.00033 1.1E-08 47.9 3.1 23 17-39 3-25 (192)
294 1u0l_A Probable GTPase ENGC; p 97.1 0.00027 9.3E-09 52.4 2.7 26 17-42 169-194 (301)
295 2eyu_A Twitching motility prot 97.1 0.00028 9.4E-09 51.3 2.7 26 15-40 23-48 (261)
296 2olj_A Amino acid ABC transpor 97.1 0.00029 1E-08 51.2 2.8 26 16-41 49-74 (263)
297 3cm0_A Adenylate kinase; ATP-b 97.1 0.00033 1.1E-08 47.8 2.9 23 17-39 4-26 (186)
298 1ji0_A ABC transporter; ATP bi 97.1 0.0003 1E-08 50.4 2.8 26 16-41 31-56 (240)
299 3b85_A Phosphate starvation-in 97.1 0.00025 8.5E-09 49.8 2.3 24 17-40 22-45 (208)
300 1vpl_A ABC transporter, ATP-bi 97.1 0.0003 1E-08 50.9 2.8 26 16-41 40-65 (256)
301 3tqc_A Pantothenate kinase; bi 97.1 0.00036 1.2E-08 52.2 3.3 24 15-38 90-113 (321)
302 3vaa_A Shikimate kinase, SK; s 97.0 0.00037 1.3E-08 48.3 3.1 24 16-39 24-47 (199)
303 2qi9_C Vitamin B12 import ATP- 97.0 0.00032 1.1E-08 50.6 2.8 26 16-41 25-50 (249)
304 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00032 1.1E-08 50.6 2.9 24 17-40 29-52 (250)
305 2ghi_A Transport protein; mult 97.0 0.00035 1.2E-08 50.7 3.1 26 16-41 45-70 (260)
306 3aez_A Pantothenate kinase; tr 97.0 0.00035 1.2E-08 52.1 3.1 25 15-39 88-112 (312)
307 3trf_A Shikimate kinase, SK; a 97.0 0.0004 1.4E-08 47.4 3.2 23 17-39 5-27 (185)
308 2jeo_A Uridine-cytidine kinase 97.0 0.00039 1.3E-08 49.9 3.2 25 15-39 23-47 (245)
309 1qhx_A CPT, protein (chloramph 97.0 0.00034 1.2E-08 47.4 2.8 22 18-39 4-25 (178)
310 2ixe_A Antigen peptide transpo 97.0 0.00034 1.2E-08 51.1 2.8 26 16-41 44-69 (271)
311 1rz3_A Hypothetical protein rb 97.0 0.0006 2.1E-08 47.3 4.0 25 15-39 20-44 (201)
312 1nks_A Adenylate kinase; therm 97.0 0.00036 1.2E-08 47.7 2.8 21 19-39 3-23 (194)
313 2qt1_A Nicotinamide riboside k 97.0 0.00043 1.5E-08 48.2 3.3 26 15-40 19-44 (207)
314 2jaq_A Deoxyguanosine kinase; 97.0 0.00038 1.3E-08 48.1 3.0 21 19-39 2-22 (205)
315 2rhm_A Putative kinase; P-loop 97.0 0.00042 1.4E-08 47.5 3.2 23 17-39 5-27 (193)
316 2zu0_C Probable ATP-dependent 97.0 0.00035 1.2E-08 50.9 2.9 25 16-40 45-69 (267)
317 3sr0_A Adenylate kinase; phosp 97.0 0.00043 1.5E-08 48.5 3.1 22 18-39 1-22 (206)
318 2nq2_C Hypothetical ABC transp 97.0 0.00036 1.2E-08 50.4 2.8 26 17-42 31-56 (253)
319 4a74_A DNA repair and recombin 97.0 0.00035 1.2E-08 49.2 2.7 24 16-39 24-47 (231)
320 2ihy_A ABC transporter, ATP-bi 97.0 0.00041 1.4E-08 50.9 3.0 26 16-41 46-71 (279)
321 2yz2_A Putative ABC transporte 97.0 0.00038 1.3E-08 50.7 2.8 26 16-41 32-57 (266)
322 2yvu_A Probable adenylyl-sulfa 97.0 0.00044 1.5E-08 47.3 3.0 26 15-40 11-36 (186)
323 1np6_A Molybdopterin-guanine d 97.0 0.00038 1.3E-08 47.4 2.7 24 17-40 6-29 (174)
324 2p65_A Hypothetical protein PF 97.0 0.0006 2E-08 46.1 3.7 33 8-40 34-66 (187)
325 3tlx_A Adenylate kinase 2; str 97.0 0.00047 1.6E-08 49.5 3.3 25 15-39 27-51 (243)
326 2yv5_A YJEQ protein; hydrolase 97.0 0.00039 1.3E-08 51.6 2.8 24 17-41 165-188 (302)
327 1sq5_A Pantothenate kinase; P- 97.0 0.00055 1.9E-08 50.9 3.6 25 15-39 78-102 (308)
328 1e4v_A Adenylate kinase; trans 97.0 0.00047 1.6E-08 48.3 3.1 22 18-39 1-22 (214)
329 1tev_A UMP-CMP kinase; ploop, 97.0 0.00048 1.7E-08 47.1 3.1 23 17-39 3-25 (196)
330 2v54_A DTMP kinase, thymidylat 97.0 0.00054 1.9E-08 47.4 3.4 24 17-40 4-27 (204)
331 3iij_A Coilin-interacting nucl 97.0 0.00047 1.6E-08 46.8 3.0 25 15-39 9-33 (180)
332 3be4_A Adenylate kinase; malar 97.0 0.00055 1.9E-08 48.1 3.4 24 16-39 4-27 (217)
333 2plr_A DTMP kinase, probable t 97.0 0.0005 1.7E-08 47.8 3.1 23 17-39 4-26 (213)
334 1uj2_A Uridine-cytidine kinase 96.9 0.00049 1.7E-08 49.6 3.2 25 15-39 20-44 (252)
335 1zak_A Adenylate kinase; ATP:A 96.9 0.00049 1.7E-08 48.5 3.0 24 16-39 4-27 (222)
336 1zd8_A GTP:AMP phosphotransfer 96.9 0.00051 1.7E-08 48.6 3.1 24 16-39 6-29 (227)
337 2c95_A Adenylate kinase 1; tra 96.9 0.00057 1.9E-08 46.9 3.3 24 16-39 8-31 (196)
338 1odf_A YGR205W, hypothetical 3 96.9 0.00061 2.1E-08 50.3 3.6 25 15-39 29-53 (290)
339 4e22_A Cytidylate kinase; P-lo 96.9 0.00057 1.9E-08 49.3 3.4 24 15-38 25-48 (252)
340 2ehv_A Hypothetical protein PH 96.9 0.00044 1.5E-08 49.3 2.8 23 16-38 29-51 (251)
341 2f1r_A Molybdopterin-guanine d 96.9 0.00022 7.6E-09 48.4 1.1 23 19-41 4-26 (171)
342 2pjz_A Hypothetical protein ST 96.9 0.00052 1.8E-08 49.9 3.0 25 17-41 30-54 (263)
343 1via_A Shikimate kinase; struc 96.9 0.00048 1.6E-08 46.6 2.6 21 19-39 6-26 (175)
344 3nh6_A ATP-binding cassette SU 96.9 0.00034 1.2E-08 52.0 2.0 26 16-41 79-104 (306)
345 1nn5_A Similar to deoxythymidy 96.9 0.00066 2.3E-08 47.3 3.3 24 16-39 8-31 (215)
346 1ukz_A Uridylate kinase; trans 96.9 0.00067 2.3E-08 47.0 3.3 25 15-39 13-37 (203)
347 1gvn_B Zeta; postsegregational 96.9 0.00058 2E-08 50.3 3.1 25 15-39 31-55 (287)
348 1lw7_A Transcriptional regulat 96.9 0.00043 1.5E-08 52.7 2.4 25 17-41 170-194 (365)
349 2wwf_A Thymidilate kinase, put 96.9 0.00069 2.4E-08 47.1 3.3 24 16-39 9-32 (212)
350 2pt5_A Shikimate kinase, SK; a 96.9 0.00066 2.3E-08 45.4 3.0 21 19-39 2-22 (168)
351 2vli_A Antibiotic resistance p 96.8 0.00047 1.6E-08 46.8 2.2 24 16-39 4-27 (183)
352 2bbs_A Cystic fibrosis transme 96.8 0.00063 2.1E-08 50.2 3.0 25 17-41 64-88 (290)
353 3tui_C Methionine import ATP-b 96.8 0.00058 2E-08 51.9 2.9 25 17-41 54-78 (366)
354 2kjq_A DNAA-related protein; s 96.8 0.00047 1.6E-08 45.7 2.1 26 16-41 35-60 (149)
355 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00058 2E-08 51.8 2.8 25 17-41 30-54 (359)
356 1ak2_A Adenylate kinase isoenz 96.8 0.0008 2.8E-08 47.8 3.4 25 15-39 14-38 (233)
357 2x8a_A Nuclear valosin-contain 96.8 0.0006 2E-08 49.9 2.7 22 19-40 46-67 (274)
358 2xb4_A Adenylate kinase; ATP-b 96.8 0.00079 2.7E-08 47.5 3.1 21 19-39 2-22 (223)
359 3bos_A Putative DNA replicatio 96.8 0.0015 5E-08 46.1 4.4 25 16-40 51-75 (242)
360 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.0007 2.4E-08 50.9 2.8 26 16-41 170-195 (330)
361 1rj9_A FTSY, signal recognitio 96.8 0.00069 2.4E-08 50.3 2.7 124 16-146 101-276 (304)
362 1z47_A CYSA, putative ABC-tran 96.8 0.00073 2.5E-08 51.2 2.9 25 17-41 41-65 (355)
363 1xjc_A MOBB protein homolog; s 96.8 0.00093 3.2E-08 45.2 3.1 24 17-40 4-27 (169)
364 3jvv_A Twitching mobility prot 96.7 0.0011 3.6E-08 50.4 3.7 24 17-40 123-146 (356)
365 3rlf_A Maltose/maltodextrin im 96.7 0.00075 2.6E-08 51.6 2.9 25 17-41 29-53 (381)
366 2yyz_A Sugar ABC transporter, 96.7 0.00076 2.6E-08 51.2 2.9 25 17-41 29-53 (359)
367 2pbr_A DTMP kinase, thymidylat 96.7 0.00089 3.1E-08 45.8 3.0 21 19-39 2-22 (195)
368 1ixz_A ATP-dependent metallopr 96.7 0.00074 2.5E-08 48.5 2.7 22 19-40 51-72 (254)
369 2gza_A Type IV secretion syste 96.7 0.0007 2.4E-08 51.5 2.7 27 15-41 173-199 (361)
370 2iyv_A Shikimate kinase, SK; t 96.7 0.0008 2.7E-08 45.8 2.7 21 19-39 4-24 (184)
371 2z0h_A DTMP kinase, thymidylat 96.7 0.00079 2.7E-08 46.2 2.7 22 19-40 2-23 (197)
372 2vp4_A Deoxynucleoside kinase; 96.7 0.00099 3.4E-08 47.3 3.3 26 15-40 18-43 (230)
373 2it1_A 362AA long hypothetical 96.7 0.00079 2.7E-08 51.2 2.9 25 17-41 29-53 (362)
374 1vht_A Dephospho-COA kinase; s 96.7 0.00098 3.3E-08 46.7 3.2 23 17-39 4-26 (218)
375 2ze6_A Isopentenyl transferase 96.7 0.00078 2.7E-08 48.6 2.7 21 19-39 3-23 (253)
376 2p5t_B PEZT; postsegregational 96.7 0.00064 2.2E-08 49.0 2.1 25 15-39 30-54 (253)
377 1gtv_A TMK, thymidylate kinase 96.7 0.00034 1.2E-08 48.8 0.7 21 19-39 2-22 (214)
378 2pez_A Bifunctional 3'-phospho 96.7 0.001 3.6E-08 45.1 3.1 24 16-39 4-27 (179)
379 1g29_1 MALK, maltose transport 96.7 0.00086 3E-08 51.2 2.9 25 17-41 29-53 (372)
380 3r20_A Cytidylate kinase; stru 96.7 0.001 3.6E-08 47.4 3.1 25 15-39 7-31 (233)
381 1e6c_A Shikimate kinase; phosp 96.7 0.00093 3.2E-08 44.9 2.7 22 18-39 3-24 (173)
382 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.001 3.5E-08 48.2 3.1 23 17-39 4-26 (260)
383 1tue_A Replication protein E1; 96.7 0.0011 3.9E-08 46.3 3.2 22 18-39 59-80 (212)
384 2oap_1 GSPE-2, type II secreti 96.7 0.0016 5.5E-08 51.8 4.5 26 16-41 259-284 (511)
385 3b9q_A Chloroplast SRP recepto 96.7 0.00084 2.9E-08 49.8 2.7 23 17-39 100-122 (302)
386 1v43_A Sugar-binding transport 96.7 0.00089 3E-08 51.1 2.9 25 17-41 37-61 (372)
387 1qf9_A UMP/CMP kinase, protein 96.7 0.001 3.6E-08 45.3 3.0 22 18-39 7-28 (194)
388 3umf_A Adenylate kinase; rossm 96.7 0.00094 3.2E-08 47.1 2.8 24 16-39 27-51 (217)
389 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.7E-08 44.5 3.0 23 17-39 7-29 (168)
390 3e70_C DPA, signal recognition 96.7 0.0009 3.1E-08 50.2 2.7 24 16-39 128-151 (328)
391 2ewv_A Twitching motility prot 96.6 0.0014 4.9E-08 50.0 3.7 26 15-40 134-159 (372)
392 2f6r_A COA synthase, bifunctio 96.6 0.0012 4.1E-08 48.4 3.2 24 15-38 73-96 (281)
393 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0011 3.6E-08 46.7 2.7 24 16-39 22-45 (235)
394 3d31_A Sulfate/molybdate ABC t 96.6 0.00072 2.5E-08 51.2 1.8 25 17-41 26-50 (348)
395 3gd7_A Fusion complex of cysti 96.6 0.0011 3.8E-08 50.9 2.8 25 17-41 47-71 (390)
396 1iy2_A ATP-dependent metallopr 96.6 0.0011 3.8E-08 48.3 2.7 22 19-40 75-96 (278)
397 1in4_A RUVB, holliday junction 96.6 0.0011 3.9E-08 49.7 2.7 23 18-40 52-74 (334)
398 2chg_A Replication factor C sm 96.6 0.0023 8E-08 44.3 4.2 23 18-40 39-61 (226)
399 1d2n_A N-ethylmaleimide-sensit 96.5 0.0019 6.6E-08 46.8 3.7 27 14-40 61-87 (272)
400 3h4m_A Proteasome-activating n 96.5 0.0023 7.7E-08 46.7 4.1 26 15-40 49-74 (285)
401 3n70_A Transport activator; si 96.5 0.0028 9.4E-08 41.6 4.1 27 15-41 22-48 (145)
402 1p9r_A General secretion pathw 96.5 0.0023 7.9E-08 49.6 4.2 26 15-40 165-190 (418)
403 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0012 4.1E-08 51.9 2.6 27 15-41 136-162 (460)
404 1p5z_B DCK, deoxycytidine kina 96.5 0.0015 5.2E-08 47.2 3.0 26 15-40 22-47 (263)
405 1m7g_A Adenylylsulfate kinase; 96.5 0.0029 9.9E-08 44.1 4.3 26 15-40 23-48 (211)
406 1lv7_A FTSH; alpha/beta domain 96.5 0.0014 4.8E-08 47.1 2.7 24 17-40 45-68 (257)
407 1oxx_K GLCV, glucose, ABC tran 96.5 0.0007 2.4E-08 51.3 1.1 25 17-41 31-55 (353)
408 3kta_A Chromosome segregation 96.5 0.0016 5.4E-08 44.3 2.8 21 19-39 28-48 (182)
409 1cr0_A DNA primase/helicase; R 96.5 0.0014 4.8E-08 48.2 2.7 24 16-39 34-57 (296)
410 4eaq_A DTMP kinase, thymidylat 96.5 0.0018 6.1E-08 46.0 3.1 25 16-40 25-49 (229)
411 2og2_A Putative signal recogni 96.5 0.0014 4.9E-08 49.7 2.7 23 17-39 157-179 (359)
412 3nwj_A ATSK2; P loop, shikimat 96.4 0.0015 5.1E-08 47.1 2.6 23 17-39 48-70 (250)
413 2cvh_A DNA repair and recombin 96.4 0.0016 5.4E-08 45.5 2.7 24 16-39 19-42 (220)
414 3co5_A Putative two-component 96.4 0.0029 9.8E-08 41.4 3.7 26 15-40 25-50 (143)
415 2obl_A ESCN; ATPase, hydrolase 96.4 0.0017 5.8E-08 49.1 2.9 27 15-41 69-95 (347)
416 2yhs_A FTSY, cell division pro 96.4 0.0016 5.5E-08 51.4 2.7 23 17-39 293-315 (503)
417 2grj_A Dephospho-COA kinase; T 96.4 0.002 6.9E-08 44.5 2.9 26 15-40 10-35 (192)
418 1n0w_A DNA repair protein RAD5 96.4 0.0017 6E-08 46.0 2.7 26 15-40 22-47 (243)
419 2w58_A DNAI, primosome compone 96.4 0.0021 7.2E-08 44.4 2.9 23 18-40 55-77 (202)
420 1a7j_A Phosphoribulokinase; tr 96.3 0.0013 4.4E-08 48.5 1.8 24 16-39 4-27 (290)
421 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.002 6.9E-08 42.6 2.6 19 20-38 26-44 (149)
422 1q3t_A Cytidylate kinase; nucl 96.3 0.0026 8.8E-08 45.2 3.3 25 15-39 14-38 (236)
423 1ltq_A Polynucleotide kinase; 96.3 0.0021 7.2E-08 47.3 2.8 22 18-39 3-24 (301)
424 3pxg_A Negative regulator of g 96.3 0.0036 1.2E-07 49.2 4.3 32 9-40 193-224 (468)
425 3cf0_A Transitional endoplasmi 96.3 0.0037 1.3E-07 46.1 4.1 25 16-40 48-72 (301)
426 3t15_A Ribulose bisphosphate c 96.3 0.0015 5.2E-08 48.1 2.0 25 16-40 35-59 (293)
427 1nij_A Hypothetical protein YJ 96.3 0.0018 6.1E-08 48.3 2.3 22 19-40 6-27 (318)
428 3b60_A Lipid A export ATP-bind 96.3 0.0023 7.7E-08 51.8 3.0 26 16-41 368-393 (582)
429 1svm_A Large T antigen; AAA+ f 96.2 0.0028 9.7E-08 48.4 3.2 25 15-39 167-191 (377)
430 3euj_A Chromosome partition pr 96.2 0.0023 7.8E-08 50.5 2.7 22 18-39 30-51 (483)
431 4a82_A Cystic fibrosis transme 96.2 0.0021 7.3E-08 51.9 2.6 26 16-41 366-391 (578)
432 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0026 8.8E-08 51.0 3.1 26 16-41 46-71 (538)
433 2dpy_A FLII, flagellum-specifi 96.2 0.0025 8.4E-08 49.8 2.9 27 15-41 155-181 (438)
434 3ozx_A RNAse L inhibitor; ATP 96.2 0.0024 8.1E-08 51.2 2.8 27 15-41 23-49 (538)
435 1sxj_E Activator 1 40 kDa subu 96.2 0.0036 1.2E-07 47.1 3.6 22 18-39 37-58 (354)
436 1sxj_C Activator 1 40 kDa subu 96.2 0.0044 1.5E-07 46.5 4.1 23 18-40 47-69 (340)
437 3gmt_A Adenylate kinase; ssgci 96.2 0.003 1E-07 44.9 3.0 25 15-39 6-30 (230)
438 3b9p_A CG5977-PA, isoform A; A 96.2 0.0025 8.5E-08 46.8 2.6 24 17-40 54-77 (297)
439 3b5x_A Lipid A export ATP-bind 96.2 0.0026 8.9E-08 51.4 2.9 26 16-41 368-393 (582)
440 1njg_A DNA polymerase III subu 96.2 0.0027 9.2E-08 44.5 2.7 21 19-39 47-67 (250)
441 3ake_A Cytidylate kinase; CMP 96.2 0.0031 1E-07 43.6 2.9 21 19-39 4-24 (208)
442 2yl4_A ATP-binding cassette SU 96.2 0.0023 7.8E-08 51.9 2.5 26 16-41 369-394 (595)
443 2qmh_A HPR kinase/phosphorylas 96.1 0.0037 1.3E-07 43.4 3.1 26 16-41 33-58 (205)
444 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0054 1.8E-07 46.4 4.2 25 15-39 22-46 (359)
445 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0037 1.3E-07 44.8 3.3 24 16-39 38-61 (262)
446 4b4t_M 26S protease regulatory 96.1 0.0049 1.7E-07 48.0 4.1 26 15-40 213-238 (434)
447 1nlf_A Regulatory protein REPA 96.1 0.0028 9.7E-08 46.2 2.7 23 17-39 30-52 (279)
448 3qf4_B Uncharacterized ABC tra 96.1 0.0026 8.8E-08 51.6 2.7 26 16-41 380-405 (598)
449 3syl_A Protein CBBX; photosynt 96.1 0.0059 2E-07 44.9 4.4 25 15-39 65-89 (309)
450 3te6_A Regulatory protein SIR3 96.1 0.0029 9.8E-08 47.3 2.6 27 14-40 42-68 (318)
451 1sxj_D Activator 1 41 kDa subu 96.1 0.0059 2E-07 45.7 4.3 23 18-40 59-81 (353)
452 3qf4_A ABC transporter, ATP-bi 96.1 0.0029 1E-07 51.2 2.7 26 16-41 368-393 (587)
453 3j16_B RLI1P; ribosome recycli 96.1 0.0032 1.1E-07 51.2 2.9 26 16-41 102-127 (608)
454 1fnn_A CDC6P, cell division co 96.0 0.0053 1.8E-07 46.6 3.9 22 19-40 46-67 (389)
455 4b4t_K 26S protease regulatory 96.0 0.006 2E-07 47.4 4.1 24 17-40 206-229 (428)
456 1c9k_A COBU, adenosylcobinamid 96.0 0.0044 1.5E-07 42.4 2.9 21 20-40 2-22 (180)
457 3ozx_A RNAse L inhibitor; ATP 96.0 0.0036 1.2E-07 50.1 2.8 26 17-42 294-319 (538)
458 2dr3_A UPF0273 protein PH0284; 96.0 0.004 1.4E-07 44.1 2.8 22 17-38 23-44 (247)
459 3zvl_A Bifunctional polynucleo 96.0 0.0039 1.3E-07 48.3 2.9 25 16-40 257-281 (416)
460 4ido_A Atlastin-1; GTPase, GTP 95.9 0.0062 2.1E-07 47.5 4.0 22 17-38 67-88 (457)
461 2px0_A Flagellar biosynthesis 95.9 0.0038 1.3E-07 46.1 2.7 23 16-38 104-126 (296)
462 4b4t_L 26S protease subunit RP 95.9 0.0067 2.3E-07 47.2 4.1 26 15-40 213-238 (437)
463 1l8q_A Chromosomal replication 95.9 0.0038 1.3E-07 46.5 2.7 25 16-40 36-60 (324)
464 3v9p_A DTMP kinase, thymidylat 95.9 0.0038 1.3E-07 44.3 2.5 25 15-39 23-47 (227)
465 3bk7_A ABC transporter ATP-bin 95.9 0.0042 1.4E-07 50.5 3.0 26 16-41 116-141 (607)
466 1pzn_A RAD51, DNA repair and r 95.9 0.0039 1.3E-07 47.2 2.7 25 16-40 130-154 (349)
467 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.0042 1.4E-07 47.3 2.8 21 17-38 24-44 (365)
468 4b4t_J 26S protease regulatory 95.9 0.0066 2.3E-07 46.7 3.9 26 15-40 180-205 (405)
469 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0046 1.6E-07 49.5 3.1 26 17-42 312-337 (538)
470 2h92_A Cytidylate kinase; ross 95.9 0.0047 1.6E-07 43.2 2.8 23 17-39 3-25 (219)
471 1vma_A Cell division protein F 95.9 0.0044 1.5E-07 46.0 2.7 22 18-39 105-126 (306)
472 2qby_A CDC6 homolog 1, cell di 95.9 0.0041 1.4E-07 47.0 2.6 25 16-40 44-68 (386)
473 3d3q_A TRNA delta(2)-isopenten 95.9 0.0047 1.6E-07 46.5 2.8 22 18-39 8-29 (340)
474 3tqf_A HPR(Ser) kinase; transf 95.9 0.0052 1.8E-07 41.7 2.7 27 15-41 14-40 (181)
475 1ofh_A ATP-dependent HSL prote 95.8 0.0045 1.5E-07 45.4 2.7 24 16-39 49-72 (310)
476 2qgz_A Helicase loader, putati 95.8 0.0093 3.2E-07 44.3 4.3 24 17-40 152-175 (308)
477 3bk7_A ABC transporter ATP-bin 95.8 0.0046 1.6E-07 50.2 2.9 26 17-42 382-407 (607)
478 4fcw_A Chaperone protein CLPB; 95.8 0.0051 1.8E-07 45.3 2.9 23 18-40 48-70 (311)
479 3crm_A TRNA delta(2)-isopenten 95.8 0.0055 1.9E-07 45.8 2.9 22 18-39 6-27 (323)
480 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0049 1.7E-07 46.0 2.6 23 18-40 46-68 (322)
481 3uk6_A RUVB-like 2; hexameric 95.8 0.01 3.5E-07 44.8 4.4 22 18-39 71-92 (368)
482 2ocp_A DGK, deoxyguanosine kin 95.8 0.0061 2.1E-07 43.4 3.0 24 17-40 2-25 (241)
483 4f4c_A Multidrug resistance pr 95.7 0.0039 1.3E-07 55.1 2.2 25 16-40 1104-1128(1321)
484 3ld9_A DTMP kinase, thymidylat 95.7 0.007 2.4E-07 42.8 3.2 25 15-39 19-43 (223)
485 3pxi_A Negative regulator of g 95.7 0.0091 3.1E-07 49.7 4.3 34 7-40 191-224 (758)
486 3j16_B RLI1P; ribosome recycli 95.7 0.0054 1.9E-07 49.8 2.8 25 19-43 380-404 (608)
487 3eie_A Vacuolar protein sortin 95.7 0.0059 2E-07 45.5 2.9 24 17-40 51-74 (322)
488 2r62_A Cell division protease 95.7 0.0036 1.2E-07 45.2 1.6 23 17-39 44-66 (268)
489 3cr8_A Sulfate adenylyltranfer 95.7 0.0041 1.4E-07 49.9 2.0 26 15-40 367-392 (552)
490 3exa_A TRNA delta(2)-isopenten 95.6 0.0077 2.6E-07 44.8 3.2 23 18-40 4-26 (322)
491 4b4t_I 26S protease regulatory 95.6 0.011 3.8E-07 45.8 4.2 26 15-40 214-239 (437)
492 3qks_A DNA double-strand break 95.6 0.0061 2.1E-07 42.4 2.5 19 20-38 26-44 (203)
493 1r6b_X CLPA protein; AAA+, N-t 95.6 0.011 3.9E-07 49.1 4.5 34 7-40 197-230 (758)
494 3a8t_A Adenylate isopentenyltr 95.6 0.0087 3E-07 45.0 3.4 23 18-40 41-63 (339)
495 2bjv_A PSP operon transcriptio 95.5 0.013 4.4E-07 42.2 4.1 27 15-41 27-53 (265)
496 1um8_A ATP-dependent CLP prote 95.5 0.0091 3.1E-07 45.4 3.4 25 16-40 71-95 (376)
497 1iqp_A RFCS; clamp loader, ext 95.5 0.014 4.7E-07 43.1 4.3 24 17-40 46-69 (327)
498 2v1u_A Cell division control p 95.5 0.0057 2E-07 46.2 2.2 26 15-40 42-67 (387)
499 4b4t_H 26S protease regulatory 95.4 0.011 3.8E-07 46.2 3.6 26 15-40 241-266 (467)
500 4edh_A DTMP kinase, thymidylat 95.4 0.01 3.4E-07 41.7 3.1 24 16-39 5-28 (213)
No 1
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=5.9e-38 Score=219.90 Aligned_cols=180 Identities=52% Similarity=0.974 Sum_probs=158.3
Q ss_pred CcchHHHHHH--hhhc-cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 1 MGLSFTKLFS--KLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 1 m~~~~~~~~~--~~~~-~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
||+.++++++ +.+. ++.++|+++|++|+|||||++++.++.+....||.+.....+...+..+++||+||++++...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 8887877777 6777 789999999999999999999999988887788988888888889999999999999999999
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
+..+++.+|++++|+|+++++++.....++...+......+.|+++|+||+|+.+....+++...+....+...++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999988887655568999999999999887777778777766666667889999
Q ss_pred cccCCCCCHHHHHHHHHHHhhhc
Q 030193 158 TCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|||+++.|++++++++.+.+.++
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ccCCCccCHHHHHHHHHHHHHhc
Confidence 99999999999999999988654
No 2
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=9.5e-38 Score=217.55 Aligned_cols=180 Identities=57% Similarity=1.008 Sum_probs=156.8
Q ss_pred CcchHHHHHHhhhc-cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccc
Q 030193 1 MGLSFTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 79 (181)
||+++++.+++.+. ++.++|+++|++|+|||||++++.++.+....||.+.....+...+..+++||+||++++...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 89999999998887 89999999999999999999999998887778888888888888899999999999999999999
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++.+|++++|+|++++.++.....++...+......+.|+++|+||+|+.+....+++...+....+...++++++||
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999998887754456899999999999988777778877777666666778999999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 030193 160 ATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|++|.|+++++++|.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999987653
No 3
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-38 Score=218.52 Aligned_cols=178 Identities=47% Similarity=0.885 Sum_probs=153.8
Q ss_pred CcchHHHHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccc
Q 030193 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 80 (181)
||..++++++ .+..+.++|+++|++|+|||||+++|.++.+....||.+.....+...+..+++||+||++++...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8999999988 788899999999999999999999999888777788888888888889999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++++|++++|+|++++++++....++..+.......+.|+++|+||+|+.+....+++...+....++..++++++|||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999988877544467999999999999877677777776665555667789999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|+++++++|.+.+..
T Consensus 160 ~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 4
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=1.1e-36 Score=212.90 Aligned_cols=178 Identities=47% Similarity=0.879 Sum_probs=147.1
Q ss_pred CcchHHHHHHhhhc-cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccc
Q 030193 1 MGLSFTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 79 (181)
|| +++ .+.+.+. .+.++|+++|++|+|||||++++.+.......||.+.....+...+..+++||+||++++...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 67 554 5555555 78999999999999999999999988865778888888888888999999999999999999999
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++++|++++|+|++++.++.....++...+......++|+++|+||+|+.+....+++...+....+...++++++||
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999998887765556899999999999988777777777666555556788999999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 030193 160 ATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|++|.|++++++++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999987653
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=5.1e-37 Score=215.98 Aligned_cols=174 Identities=81% Similarity=1.318 Sum_probs=150.2
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccccccccc
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
.++++.+.++.++|+++|++|+|||||++++.++.+....||.+.....++..+..+++||+||++++...+..+++++|
T Consensus 19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp CGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 44566777889999999999999999999999988887788888888888889999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++++|+|+++++++.....++..++......++|+++|+||+|+.+....+++...+....+...++++++|||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999999988877655568999999999999877777788887777666677889999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030193 167 YEGLDWLSNNIATK 180 (181)
Q Consensus 167 ~~~~~~i~~~l~~~ 180 (181)
++++++|.+.+.++
T Consensus 179 ~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 179 YDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988653
No 6
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1.5e-35 Score=204.16 Aligned_cols=166 Identities=57% Similarity=1.015 Sum_probs=149.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
.+.++|+++|++|+|||||++++.++.+....||.+.....+...+..+++||+||++.+...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999999988888898888888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
+++.++.....++...+......++|+++|+||+|+.+....+++...+....+...+++++++||++|.|++++++++.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999998888765446899999999999988777777877777666667788999999999999999999999
Q ss_pred HHhhhc
Q 030193 175 NNIATK 180 (181)
Q Consensus 175 ~~l~~~ 180 (181)
+.+.++
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 988653
No 7
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=4e-36 Score=205.76 Aligned_cols=163 Identities=91% Similarity=1.400 Sum_probs=144.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+||+++|++|+|||||++++.++.+....||.+.....+...+..+++||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999998888778898888888888899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+++.....++..+.......+.|+++|+||+|+.+....+++...+....++..++++++|||++|.|++++++++.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999998887765556899999999999987777777877777666666788999999999999999999999987
Q ss_pred hhc
Q 030193 178 ATK 180 (181)
Q Consensus 178 ~~~ 180 (181)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 654
No 8
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=4.1e-36 Score=209.48 Aligned_cols=171 Identities=47% Similarity=0.844 Sum_probs=147.5
Q ss_pred HHhhhc--cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCccccccccccccc
Q 030193 9 FSKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 9 ~~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
+.+... ...++|+++|++|||||||++++.+..+....||.+.....+...+..+++||+||++.++..+..+++.+|
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 85 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTD 85 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 344444 678999999999999999999999998777788888877788888999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++++|+|++++.++.....++...+......++|+++|+||+|+.+....+++...+....+...++++++|||++|.|+
T Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 99999999999999999988888776544568999999999999877777777776665555666789999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
+++++++.+.+.+
T Consensus 166 ~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 166 QDGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
No 9
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=7.9e-35 Score=204.45 Aligned_cols=162 Identities=38% Similarity=0.617 Sum_probs=139.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
.+.++|+++|++|+|||||++++.++.+....||.+.....+...+..+++||+||+++++..+..+++.+|++++|+|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 100 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 100 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEEC
Confidence 56789999999999999999999999888778888888888888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc-------cCCcceEEEEcccCCCCCHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-------LRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~S~~~~~~i~ 167 (181)
+++++|+....++...+......++|+++|+||+|+.+....+++.+.+.... ....++++++|||++|.|++
T Consensus 101 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 180 (190)
T 1m2o_B 101 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYL 180 (190)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHH
T ss_pred CChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHH
Confidence 99999999999988887654446899999999999987666777776655432 23356789999999999999
Q ss_pred HHHHHHHHH
Q 030193 168 EGLDWLSNN 176 (181)
Q Consensus 168 ~~~~~i~~~ 176 (181)
+++++|.+.
T Consensus 181 ~l~~~l~~~ 189 (190)
T 1m2o_B 181 EAFQWLSQY 189 (190)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999999865
No 10
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=4.9e-35 Score=203.86 Aligned_cols=163 Identities=48% Similarity=0.879 Sum_probs=143.3
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
..+.++|+++|++|+|||||+++|.+..+....+|.+.....+...+..+++||+||++++...+..+++.+|++++|+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 36789999999999999999999999998777788888888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
++++.+++....++...+......++|+++|+||+|+.+....+++...+....+...++++++|||++|.|+++++++|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999888775444689999999999998776777777777666666678899999999999999999999
Q ss_pred HHH
Q 030193 174 SNN 176 (181)
Q Consensus 174 ~~~ 176 (181)
.+.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 764
No 11
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=7.1e-35 Score=204.24 Aligned_cols=165 Identities=30% Similarity=0.675 Sum_probs=145.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.+.++|+++|++|+|||||+++|.+..+. ...+|.+..+..+...++.+++||+||++++...+..+++.+|++++|+|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 99 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD 99 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEE
Confidence 56899999999999999999999998876 56788888888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
+++++++.....++..++......++|+++|+||+|+.+....+++...+....+...++++++|||++|.|+++++++|
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 179 (188)
T 1zd9_A 100 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179 (188)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999888775444689999999999998776667777776665556677899999999999999999999
Q ss_pred HHHhhh
Q 030193 174 SNNIAT 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+.+
T Consensus 180 ~~~~~~ 185 (188)
T 1zd9_A 180 IQHSKS 185 (188)
T ss_dssp HHTCC-
T ss_pred HHHHHh
Confidence 998764
No 12
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=5.8e-35 Score=205.96 Aligned_cols=169 Identities=36% Similarity=0.646 Sum_probs=143.0
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCcccc--cCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEE
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
..+.....+|+++|++|||||||+++|.+..+... .+|.+.....++...+.+++||+||++++...+..+++.+|++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 34457889999999999999999999999987653 7889888888889999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCC-------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-CCcceEEEEccc
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDEL-------RDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCA 160 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~ 160 (181)
|+|+|++++.+|.....|+..++..... .++|+++|+||+|+.+....+++...+....+ +..++++++|||
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 170 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG 170 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence 9999999999999999998888764221 27899999999999888777788777765544 557789999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++|++|.+.+.+
T Consensus 171 ~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 171 LKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 13
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.1e-36 Score=216.21 Aligned_cols=160 Identities=17% Similarity=0.344 Sum_probs=121.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
+.+.+||+++|++|||||||+++|+.+.|. .+.||.+..+.. +.. ..+.++||||+|+++|+..+..|++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 357899999999999999999999999887 457787765433 333 347899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|||++++.+|.++..|+..+.... .+++|++||+||+|+.+.. ..++... .++..+++|++|||++|.||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~-----~a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhh-----HHHHhCCeeEEEeCCCCcCH
Confidence 99999999999999999988765533 3679999999999997542 2222211 12223457999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
+++|+.|++.+..
T Consensus 164 ~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 164 KQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 14
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=1.9e-34 Score=203.79 Aligned_cols=165 Identities=29% Similarity=0.611 Sum_probs=133.0
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
...+.++|+++|++|||||||++++.++.+....||.+.....+...+..+++|||||+++++..+..+++.+|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 34667899999999999999999999988877778887777788888999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------cC---CcceEEEEccc
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------LR---QRHWYIQSTCA 160 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~S~ 160 (181)
|++++++|.....|+...+......++|+++|+||+|+.+....+++........ +. ..++++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999998887754446899999999999987666667666554322 11 24678999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 030193 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l 177 (181)
++|.|+++++++|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998764
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-34 Score=200.07 Aligned_cols=165 Identities=44% Similarity=0.796 Sum_probs=141.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC-c-ccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE-I-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+.++|+++|++|+|||||+++|.+.. + ....+|.+.....+...+..+++||+||++++...+..+++++|++++|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVI 98 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 578999999999999999999999887 3 35677888887888888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|++++.++.....++..++..... .++|+++|+||+|+.+....+++........+...++++++|||++|.|+++++
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 99 DSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp ETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHH
Confidence 999999999999988888776443 579999999999998776777777766555555567899999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
++|.+.+.+
T Consensus 179 ~~l~~~i~~ 187 (190)
T 2h57_A 179 DWLQDQIQT 187 (190)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 999998754
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-34 Score=215.56 Aligned_cols=167 Identities=91% Similarity=1.388 Sum_probs=148.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
..+.++|+++|++|+|||||+++|.+..+....||.+.....++..++.+++|||||++.+...+..+++.+|++|+|||
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35678999999999999999999999998877789999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
++++.+|.....++...+......++|+++|+||+|+.+....+++...+....+...+++++++||++|.|++++|++|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999998887666789999999999999888888888888888777888999999999999999999999
Q ss_pred HHHhhhc
Q 030193 174 SNNIATK 180 (181)
Q Consensus 174 ~~~l~~~ 180 (181)
.+.+.++
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9988653
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=2.6e-32 Score=216.91 Aligned_cols=166 Identities=72% Similarity=1.255 Sum_probs=151.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEEC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
...++|+++|.+|+|||||+++|.+..+....||.+..+..++++++.+++|||+|++.+...+..+++.+|++|+|||+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~ 399 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 399 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEET
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 46799999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
+++.+|.....++..++......++|+++|+||+|+.+....+++...+........++++++|||++|.|+++++++|.
T Consensus 400 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 479 (497)
T 3lvq_E 400 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 479 (497)
T ss_dssp TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999988766556899999999999988777788888888777777889999999999999999999999
Q ss_pred HHhhhc
Q 030193 175 NNIATK 180 (181)
Q Consensus 175 ~~l~~~ 180 (181)
+.+.++
T Consensus 480 ~~~~~~ 485 (497)
T 3lvq_E 480 SNYKSK 485 (497)
T ss_dssp HHCC--
T ss_pred HHHHhc
Confidence 987654
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=8.3e-33 Score=189.56 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=105.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEE-E--EEECCEEEEEEEcCCCCCcccccccccccccEEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.+||+++|++|+|||||++++.+..+....++.+.... . ++...+.+++||++|++++...+..+++.+|++++|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998776544444443332 2 22345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
++++.++.....|+..+.......++|+++|+||+|+.+... .++... + ....+++++++||++|.|++++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-C----AVVFDCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH-H----HHHTTCEEEECBGGGTBSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH-H----HHHhCCcEEEeccCCCCCHHHHHH
Confidence 999999999999988887765556899999999999975432 222211 1 112245899999999999999999
Q ss_pred HHHHHhhhc
Q 030193 172 WLSNNIATK 180 (181)
Q Consensus 172 ~i~~~l~~~ 180 (181)
++.+.+.++
T Consensus 157 ~l~~~~~~~ 165 (166)
T 3q72_A 157 GVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988653
No 19
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.98 E-value=1.9e-32 Score=193.76 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=124.4
Q ss_pred HhhhccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE---EEEECCEEEEEEEcCCCCCcccccccccccc
Q 030193 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 85 (181)
+..+..+.+||+++|++|+|||||+++|.+..+.. ..+|.+..+. .+....+.+++||+||++++...+..+++.+
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 34445688999999999999999999999988763 4455554432 2334668999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++... + ....+++++++||++|
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~ 171 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK-L----AESWGATFMESSAREN 171 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECCTTCH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH-H----HHHhCCeEEEEeCCCC
Confidence 99999999999999999998888877655556799999999999875432 222211 1 1122457999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030193 164 EGLYEGLDWLSNNIATK 180 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~~ 180 (181)
.|++++|++|.+.+.++
T Consensus 172 ~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 172 QLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999987653
No 20
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.98 E-value=2.3e-32 Score=187.71 Aligned_cols=163 Identities=21% Similarity=0.410 Sum_probs=124.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++|+++|++|+|||||++++.+..+. ...|+.+... ..+... .+.+++||+||++++...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 589999999999999999999998875 4556665443 334443 46899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.....++........+...+++++++||++|.|++++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999988888776665432 25799999999999875421111100000111122345899999999999999999
Q ss_pred HHHHHhhhc
Q 030193 172 WLSNNIATK 180 (181)
Q Consensus 172 ~i~~~l~~~ 180 (181)
+|.+.+.+|
T Consensus 162 ~l~~~i~~k 170 (170)
T 1ek0_A 162 GIGEKIPLK 170 (170)
T ss_dssp HHHTTSCCC
T ss_pred HHHHHHhhC
Confidence 999887654
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.98 E-value=6.6e-32 Score=187.70 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=125.8
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.++.+. ...+|.+..+ ..+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 356899999999999999999999987765 4456665544 2334444 78899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHH
Confidence 999999999999998888777665444679999999999986543 222222211 1234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (181)
T 3t5g_A 158 DVFRRIILEAEK 169 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=7.9e-31 Score=183.19 Aligned_cols=157 Identities=14% Similarity=0.240 Sum_probs=121.4
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+...+||+++|++|||||||+++++++.+.. ..+|.+.....+...+ +.+++||++|+++++ +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 44678999999999999999999999998764 4455433333455555 678899999998887 678899999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCccCCc-ceEEEEcccCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQR-HWYIQSTCATSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~ 164 (181)
+|||++++.+|+.+..|+..+.......++|+++|+||+|+.. ....++..... +.. .+++++|||++|.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS-----TDLKRCTYYETCATYGL 165 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH-----HHTTTCEEEEEBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH-----HHcCCCeEEEecCCCCC
Confidence 9999999999999988887776654445789999999999842 12222222211 111 2579999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030193 165 GLYEGLDWLSNNIAT 179 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~ 179 (181)
|++++|+++.+.+.+
T Consensus 166 gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 166 NVERVFQDVAQKVVA 180 (184)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
No 23
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=182.22 Aligned_cols=160 Identities=15% Similarity=0.113 Sum_probs=114.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccce--EEEEEECC--EEEEEEEcCCCCC--cccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKN--ISFTVWDVGGQDK--IRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~--~~~~~~~~~~~~d~~ 88 (181)
+..++|+++|++|+|||||+++|.+..+....++.+.. ...+...+ +.+++||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 45789999999999999999999998876544544443 23344444 5889999999987 566677888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|+|++++.+|.....|+..+.......++|+++|+||+|+.+... .++... + ....++++++|||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-C----AVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-H----HHHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-H----HHHcCCeEEEEecCCCCCH
Confidence 99999999999999988877766543345799999999999976432 222221 1 1122458999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
++++++|.+.+..
T Consensus 157 ~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 157 AELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 24
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=4.4e-31 Score=188.63 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=121.6
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE---EEEECCEEEEEEEcCCCCCcccccccccccccE
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
......+||+++|++|+|||||+++|.+..+.. +.+|.+..+. .++...+.+++||++|++++...+..+++++|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 344678999999999999999999999988764 4667665543 233455899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCccCCcce
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (181)
+|+|||++++.+|......|...+.... .++|+++|+||+|+.+. ...++... .++..++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~ 175 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA-----IAKQLGA 175 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-----HHHHHTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH-----HHHHcCC
Confidence 9999999999999985444444444322 57999999999999652 22222111 1122244
Q ss_pred -EEEEcccCCCCC-HHHHHHHHHHHhhh
Q 030193 154 -YIQSTCATSGEG-LYEGLDWLSNNIAT 179 (181)
Q Consensus 154 -~~~~~S~~~~~~-i~~~~~~i~~~l~~ 179 (181)
++++|||++|.| ++++|+++.+.+..
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 799999999998 99999999998754
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=6.8e-31 Score=180.33 Aligned_cols=159 Identities=20% Similarity=0.364 Sum_probs=125.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.++.+.. ..++.+... ..+... .+.+++||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 567999999999999999999999887763 445555443 333333 578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.... .+++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999998888777665432 2579999999999986532 223322211 2234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
No 26
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=1.8e-31 Score=182.86 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=123.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.+..+. ...+|.+..+.. +.. ..+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999998776 345565544322 222 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCC-cceEEEEcccCCCCCHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~ 168 (181)
+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..... +. .+++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-----RQWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTSCEEEECBTTTTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHH-----HHccCCcEEEecCCCCCCHHH
Confidence 99999999988888777665533335799999999999975432 22222211 11 145899999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
++++|.+.+.
T Consensus 157 l~~~l~~~i~ 166 (167)
T 1c1y_A 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 27
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=5.5e-32 Score=185.34 Aligned_cols=160 Identities=19% Similarity=0.298 Sum_probs=123.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEECC--EEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
..++|+++|++|+|||||++++.+..+.. ..+|.+.... .+...+ +.+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999988753 4455554432 234443 6899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHH
Confidence 9999999999988877776654433579999999999996532 233332221 123457999999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
++++.+.+.++
T Consensus 158 ~~~l~~~i~~~ 168 (168)
T 1u8z_A 158 FFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999988653
No 28
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=7.8e-32 Score=187.64 Aligned_cols=159 Identities=20% Similarity=0.367 Sum_probs=98.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...||.+..+ ..+...+ +.+++||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45799999999999999999999988765 4456655443 3455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999999999888877665442 22579999999999997542 223322211 1234589999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=1.6e-31 Score=185.40 Aligned_cols=162 Identities=18% Similarity=0.272 Sum_probs=128.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
+..+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+...+ +.+++||+||++++...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 44678999999999999999999999987763 4556655443 344444 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|+|++++.++.....|+..++......++|+++|+||+|+.+... .++... + ....+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-F----GASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHcCCeEEEecCCCCCCH
Confidence 99999999999999988888775544446799999999999975332 222221 1 1123468999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 160 ~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 160 DEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 30
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=2.5e-31 Score=185.07 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=125.9
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
....+||+++|++|+|||||+++|.+..+. ...++.+..+ ..+...+ +.+++||+||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 356899999999999999999999988766 4455555443 2233333 56788999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccC-CCCCH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCAT-SGEGL 166 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~i 166 (181)
+|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||+ ++.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHhCCeEEEeccCCCCCCH
Confidence 999999999999998887777654334679999999999987632 222222211 1123469999999 99999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998865
No 31
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=6.2e-31 Score=184.82 Aligned_cols=160 Identities=23% Similarity=0.292 Sum_probs=123.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcccc-----------cCcccceEEE-----EEECCEEEEEEEcCCCCCccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVET-----VEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------~~t~~~~~~~-----~~~~~~~~~~~d~~g~~~~~~ 76 (181)
..+..+||+++|++|+|||||++.+.+.....+ .||.+..+.. ++...+.+++||+||++++..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 346789999999999999999987766544332 2344433322 222457899999999999999
Q ss_pred ccccccccccEEEEEEECC------CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCC
Q 030193 77 LWRHYFQNTQGLIFVVDSN------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (181)
.+..+++++|++++|||++ +..++..+..|+... . ....++|+++|+||+|+.+....++.......
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~-~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----- 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-G-LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----- 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-T-CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh-c-cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----
Confidence 9999999999999999998 455666666666655 2 23368999999999999887666666655433
Q ss_pred cce-EEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 151 RHW-YIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 151 ~~~-~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.++ +++++||++|.|+++++++|.+.+.+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 344 79999999999999999999998764
No 32
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=4.9e-31 Score=184.69 Aligned_cols=159 Identities=18% Similarity=0.358 Sum_probs=124.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+..+ ..+... .+.+++||+||++++...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 45789999999999999999999998875 4455655443 333333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+... .++..... +..+++++++||++|.|++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKENINVK 173 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 999999999998887776655432 235799999999999975322 22222211 1223579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 174 ~l~~~l~~~i~~ 185 (189)
T 2gf9_A 174 QVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 33
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=5.4e-31 Score=182.87 Aligned_cols=161 Identities=19% Similarity=0.345 Sum_probs=125.3
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.....++|+++|++|+|||||+++|.+..+.. ..++.+... ..+... .+.+++||+||++++...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34678999999999999999999999988763 345555433 334444 4689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|+|++++.++.....|+..+.... .+++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence 999999999999988888777665432 2579999999999996543 233333221 12345899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (181)
T 2efe_B 162 VKEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987754
No 34
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=1.7e-30 Score=182.62 Aligned_cols=160 Identities=22% Similarity=0.321 Sum_probs=124.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||+++|.+..+. ...+|.+..+.. +... .+.+++||+||++++...+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 56799999999999999999999998876 445666555433 3333 4678999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceE-EEEcccCCCCC
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWY-IQSTCATSGEG 165 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~ 165 (181)
|+|++++.++......|...+... ..++|+++|+||+|+.+. ...++..... +..+++ ++++||++|.|
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-----QKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-----HHHTCSCEEECBTTTTBS
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHH-----HhcCCCEEEEeecCCCCC
Confidence 999999999998766555555532 257999999999999753 2222222211 112233 89999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030193 166 LYEGLDWLSNNIATK 180 (181)
Q Consensus 166 i~~~~~~i~~~l~~~ 180 (181)
++++|+++.+.+.++
T Consensus 175 i~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 175 LNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
No 35
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=2.8e-31 Score=182.39 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=114.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc---ccCcccceEEEEEECC--EEEEEEEcCCCCCccc-ccccccccccEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKN--ISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~-~~~~~~~~~d~~i~ 90 (181)
.+||+++|++|+|||||+++|.+..+.. ..++.+.....+...+ +.+++||+||++++.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998766542 1223333334444444 7889999999998876 67778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|+++++++.....|+..+.......++|+++|+||+|+.+.. ..++.... .+..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL-----AGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHH-----HHHcCCcEEEecCccCCCHHH
Confidence 99999999999999998888765444579999999999987432 22222221 112345899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030193 169 GLDWLSNNIATK 180 (181)
Q Consensus 169 ~~~~i~~~l~~~ 180 (181)
+|+++.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988653
No 36
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=9e-31 Score=179.85 Aligned_cols=159 Identities=23% Similarity=0.406 Sum_probs=119.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|+|||||++++.+..+. ...++.+.. ...+... .+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4689999999999999999999998875 345555533 3344444 3789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|+|++++.++.....|+..+... ...++|+++|+||+|+.+... .++... + .+..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEA-L----AKELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHH-H----HHHHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCCcCccCHHHHHH-H----HHHcCCeEEEEECCCCCCHHHH
Confidence 99999999988887777665443 225799999999999954332 222221 1 1112357899999999999999
Q ss_pred HHHHHHHhhhc
Q 030193 170 LDWLSNNIATK 180 (181)
Q Consensus 170 ~~~i~~~l~~~ 180 (181)
++++.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 37
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=2.7e-30 Score=184.27 Aligned_cols=163 Identities=25% Similarity=0.326 Sum_probs=121.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEEC---CEEEEEEEcCCCCCccc-ccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK---NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~-~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++|+|||||+++|++..+....+++......+... .+.+++|||||++++.. .+..+++.+|++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 568999999999999999999999998876666666666666665 68999999999999988 78888999999999
Q ss_pred EEECCCcc-cHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----------------------
Q 030193 91 VVDSNDRD-RVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG----------------------- 144 (181)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~~----------------------- 144 (181)
|+|+++.. ++....++|...+.. ....++|+++|+||+|+.+....+++...+.
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 99998753 466666777665432 1224789999999999987654433322111
Q ss_pred CCccC---------C--cceEEEEcccCCC------CCHHHHHHHHHHHh
Q 030193 145 LHSLR---------Q--RHWYIQSTCATSG------EGLYEGLDWLSNNI 177 (181)
Q Consensus 145 ~~~~~---------~--~~~~~~~~S~~~~------~~i~~~~~~i~~~l 177 (181)
..... . .+++|++|||++| .|++++|++|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00111 1 1788999999999 99999999998753
No 38
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.3e-31 Score=182.73 Aligned_cols=159 Identities=22% Similarity=0.399 Sum_probs=124.4
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.+..++|+++|++|+|||||+++|.+..+. ...++.+.. ...+...+ +.+++||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 366799999999999999999999998876 445555533 34555565 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
++|+|++++.++.....|+..+.... .++|+++|+||+|+.+... .++..... ...+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999999999887776665432 4799999999999875432 22221111 112346899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 159 ~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 159 EEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 39
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=184.07 Aligned_cols=159 Identities=21% Similarity=0.377 Sum_probs=121.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|.+.. ...+...+ +.+++||+||++++...+..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 56789999999999999999999998875 445665543 34455555 79999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCccCCcce-EEEEcccCCCCCH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHW-YIQSTCATSGEGL 166 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i 166 (181)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+. ...++..... +..++ ++++|||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCCH
Confidence 9999999999988887776654432 357999999999999753 2333332221 12244 7999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 181 ~~l~~~l~~~i~~ 193 (201)
T 2hup_A 181 EEAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-31 Score=184.77 Aligned_cols=161 Identities=18% Similarity=0.383 Sum_probs=118.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccceEEE--EEECC--EEEEEEEcCCCCCcccccccccccccE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+..++|+++|++|+|||||+++|.+..+. ...+|.+..+.. +...+ +.+++||+||++++...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 366899999999999999999999998874 445666665532 34444 689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..... +..+++++++||+++.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 999999999999888877766654422 2579999999999997643 222222211 12245789999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030193 166 LYEGLDWLSNNIATK 180 (181)
Q Consensus 166 i~~~~~~i~~~l~~~ 180 (181)
++++++++.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 41
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=1.3e-30 Score=182.57 Aligned_cols=162 Identities=20% Similarity=0.366 Sum_probs=127.6
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE---EEEEC-----------CEEEEEEEcCCCCCcccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYK-----------NISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~~~d~~g~~~~~~~ 77 (181)
..+..++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+... .+.+++||+||++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3466899999999999999999999998875 44667666554 33333 468999999999999999
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (181)
+..+++.+|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... ...++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCCE
Confidence 999999999999999999999998888877776554433579999999999997532 223322211 1123478
Q ss_pred EEcccCCCCCHHHHHHHHHHHhhh
Q 030193 156 QSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 156 ~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++||+++.|+++++++|.+.+.+
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987754
No 42
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=6.5e-32 Score=190.75 Aligned_cols=165 Identities=19% Similarity=0.364 Sum_probs=116.4
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccc
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~ 85 (181)
+...+..++|+++|++|+|||||+++|++..+. ...++.+.. ...+...+ +.+++||+||++++...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 344467899999999999999999999998865 345555533 33344443 7899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC------C--CCHhHHHhhhCCCccCCcceEEEE
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN------A--MNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
|++++|+|++++.++.....|+..+.. ....++|+++|+||+|+.+ . ...++... + +...++++++
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~ 175 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIED-AAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-L----AMTYGALFCE 175 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHH-HC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH-H----HHHHTCEEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHH-hcCCCCCEEEEEECcccccccccccccccCHHHHHH-H----HHHcCCeEEE
Confidence 999999999999999888876654432 2224789999999999852 1 11111111 1 1123458999
Q ss_pred cccCCCCCHHHHHHHHHHHhhhcC
Q 030193 158 TCATSGEGLYEGLDWLSNNIATKA 181 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~~~ 181 (181)
+||++|.|+++++++|.+.+.++|
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~~~~ 199 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVKKRT 199 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTC--
T ss_pred eeCCCCCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999998775
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=3.2e-31 Score=183.58 Aligned_cols=161 Identities=17% Similarity=0.301 Sum_probs=123.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc--ceEEEEEECC---EEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.+.++|+++|++|+|||||+++|.+..+. ...||.+ .....+...+ ..+++||+||++.+...+..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 56799999999999999999999998875 3456665 3445566655 8999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++|+|++++.+++....|+..+.... ....+|+++|+||+|+.+.. ..++..... +..+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCC
Confidence 99999999999988876665543310 00234589999999997532 222222211 1224579999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030193 165 GLYEGLDWLSNNIATK 180 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~~ 180 (181)
|+++++++|.+.+.+.
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987653
No 44
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=184.56 Aligned_cols=160 Identities=20% Similarity=0.368 Sum_probs=125.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+.. ...+...+ +.+++||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 56789999999999999999999998875 445555533 34455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.... ++..... ...+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCCCHH
Confidence 999999999998888876655432 2257999999999999764322 2221111 1123468999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.5e-30 Score=179.89 Aligned_cols=161 Identities=20% Similarity=0.320 Sum_probs=126.4
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE--EEE--CCEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..++.+||+++|++|+|||||+++|.+..+. ...++.+..... +.. ....+++||+||++++...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 3367899999999999999999999998875 456666655433 322 45789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..... +..+++++++||+++.|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAIN 172 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcC
Confidence 99999999999999887776665432 23579999999999997522 333333322 23356899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 173 i~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 173 IEELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987754
No 46
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5e-30 Score=179.98 Aligned_cols=160 Identities=24% Similarity=0.394 Sum_probs=126.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+... ..+... .+.+++||+||++++...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45789999999999999999999998876 4456655443 334443 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++.... ++..+++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF-----ARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHHH
Confidence 999999999998888877776554434579999999999996432 22222221 112346799999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
++++|.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (195)
T 1x3s_A 168 AFEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 47
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=3e-30 Score=178.48 Aligned_cols=163 Identities=13% Similarity=0.294 Sum_probs=124.5
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
....++|+++|++|+|||||++++.+..+. ...++.+... ..+...+ +.+++||+||++++...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 356799999999999999999999988865 4456666544 3444444 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++|+|++++.++.....|+..+... ....++|+++|+||+|+.+.. ..++...... ...+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 9999999999988887766655432 222578999999999997432 3333333221 0234579999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030193 165 GLYEGLDWLSNNIATK 180 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~~ 180 (181)
|++++++++.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987653
No 48
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.9e-30 Score=180.96 Aligned_cols=159 Identities=20% Similarity=0.344 Sum_probs=125.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||+++|.+..+. ...++.+... ..+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 56799999999999999999999998876 3455555433 3445554 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++.... +...+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRF-----AQENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence 999999999998888777654432 22579999999999996432 22232221 12234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++++++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=3.9e-31 Score=183.06 Aligned_cols=161 Identities=20% Similarity=0.322 Sum_probs=125.0
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..+..++|+++|++|+|||||+++|.+..+.. ..++.+... ..+... .+.+++||+||++++...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34678999999999999999999999988763 445555433 334443 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|+|++++.++.....|+...... ...++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 99999999999998888776655432 22579999999999996532 223332221 12345899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++++++.+.+.+
T Consensus 165 i~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 50
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=1.9e-30 Score=181.13 Aligned_cols=161 Identities=20% Similarity=0.316 Sum_probs=122.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+.. ..+|..... ..+...+ +.+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 357899999999999999999999988764 344443222 2333444 568899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 170 (181)
|+|++++.++.....|+..+.......++|+++|+||+|+.+.....+....+. ...+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 999999999999888887776644446899999999999975443222222111 1123468999999999999999
Q ss_pred HHHHHHhhh
Q 030193 171 DWLSNNIAT 179 (181)
Q Consensus 171 ~~i~~~l~~ 179 (181)
+++.+.+..
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
No 51
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.6e-31 Score=186.87 Aligned_cols=159 Identities=19% Similarity=0.326 Sum_probs=124.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|++..+. ...+|.+..+ ..+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45789999999999999999999998876 4556665444 3445544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..... ...++++++|||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999998888776655432 22579999999999997532 222222211 1234578999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++|+++.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 52
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=184.06 Aligned_cols=159 Identities=19% Similarity=0.323 Sum_probs=125.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE--CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+..+. .+.. ....+++||+||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45789999999999999999999998876 34556555443 2333 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999998888777666543 33579999999999997532 222222211 1234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 53
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=4.8e-30 Score=176.30 Aligned_cols=159 Identities=19% Similarity=0.321 Sum_probs=117.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEE--CCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||++++.+..+. ...++.+.... .+.. ..+.+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999988875 45566665443 3433 3468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.. ....++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRK-MLGNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HHGGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 99999999999888877665433 222479999999999997532 223322211 1234588999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 54
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=1.1e-30 Score=179.37 Aligned_cols=159 Identities=21% Similarity=0.370 Sum_probs=124.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|.+..+. ...++.+... ..+... ...+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999998865 3456655443 334444 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.. ...+..|+++|+||+|+.+... .++... + ....+++++++||+++.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKD-Y----ADSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHH-H----HHHcCCEEEEEeCCCCcCHH
Confidence 99999999999888776655543 3336799999999999975432 222222 1 11234589999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.9e-30 Score=183.07 Aligned_cols=161 Identities=22% Similarity=0.387 Sum_probs=122.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..+..++|+++|++|+|||||+++|++..+. ...++.+.. ...+...+ +.+++||+||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3466899999999999999999999988865 445555533 34555655 789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCH
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 166 (181)
+++|+|++++.++.....|+..+... ...++|+++|+||+|+..... .++... +. ...+++++++||+++.|+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEA-LA----KELGIPFIESSAKNDDNV 169 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-TTTCSEEEEEEECTTCSSCCSCHHHHHH-HH----HHHTCCEEECBTTTTBSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCcccccCHHHHHH-HH----HHcCCEEEEEeCCCCCCH
Confidence 99999999998888888776665442 224799999999999954322 222221 11 112346899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030193 167 YEGLDWLSNNIAT 179 (181)
Q Consensus 167 ~~~~~~i~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 170 ~~l~~~l~~~~~~ 182 (213)
T 3cph_A 170 NEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 56
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=1.7e-30 Score=178.07 Aligned_cols=159 Identities=18% Similarity=0.341 Sum_probs=124.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|.+... ..+... ...+++||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998875 3456655443 344444 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ..++..... +..+++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999999988887766654432 478999999999987532 233332211 1234589999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
+++++|.+.+.++
T Consensus 156 ~l~~~l~~~~~~~ 168 (168)
T 1z2a_A 156 EVFKYLAEKHLQK 168 (168)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999987653
No 57
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=4.4e-31 Score=186.10 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=120.4
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc--ceEEEEEEC--CEEEEEEEcCCCCCccc-ccccccccc
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRP-LWRHYFQNT 85 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~~~d~~g~~~~~~-~~~~~~~~~ 85 (181)
.+....++|+++|++|||||||+++|.+.... ...+++. .....+... .+.+.+||++|++++.. .+..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 34467899999999999999999999764432 2333333 223334444 46889999999988765 677888999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
|++++|||++++.+|..+..|+..+.......++|+++|+||+|+.+.. ..++.... ++..++++++|||+++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sa~~~ 172 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL-----AGTLSCKHIETSAALH 172 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEEEBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHH-----HHHhCCEEEEEcCCCC
Confidence 9999999999999999999888776553333479999999999997542 22332221 1122357999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030193 164 EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~~ 179 (181)
.|++++|+++.+.+.+
T Consensus 173 ~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 173 HNTRELFEGAVRQIRL 188 (195)
T ss_dssp BSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998764
No 58
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=2.6e-30 Score=179.17 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=117.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
...+||+++|++|+|||||+++|.++.+..+.||.+..+ ..+...+ +.+++||+||+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 457999999999999999999999998877677766443 2344443 6889999999977 4577889999999
Q ss_pred EECCCcccHHHHHHHHH--HHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 92 VDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~--~~~~~~~~~~~piivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
||++++.++.....|+. ..+......++|+++|+||+|+.+ ....++....... ..++++++|||++|.|
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEeccccCC
Confidence 99999999999888632 333333335799999999999842 1223333221110 0246899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++|+++.+.+.+
T Consensus 156 i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 156 VDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 59
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.2e-30 Score=180.55 Aligned_cols=160 Identities=17% Similarity=0.165 Sum_probs=121.9
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
....++|+++|++|+|||||+++|.+..+.. ..+|.+..+ ..+...+ +.+++||+||++++...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 3567899999999999999999999988763 455655443 2344443 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCccCCcce-E
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHW-Y 154 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~-~ 154 (181)
+|+|++++.+|......|...+.... +++|+++|+||+|+.+.. ..++.... .+..+. +
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~ 168 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL-----AKEIGACC 168 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH-----HHHHTCSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH-----HHHcCCcE
Confidence 99999999999988744444333322 479999999999997532 11111110 111122 6
Q ss_pred EEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 155 IQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 155 ~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++|||++|.|+++++++|.+.+..
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 8999999999999999999988754
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.8e-31 Score=185.78 Aligned_cols=165 Identities=17% Similarity=0.241 Sum_probs=123.1
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEEC--CEEEEEEEcCCCCCccccccccccc
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEYK--NISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~ 84 (181)
+++......++|+++|++|+|||||+++|.+..+. ...+|.+..+.. +... .+.+++||+||+++ ...+..+++.
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~ 98 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRW 98 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence 33444467899999999999999999999998876 345565544422 3343 47899999999988 7778888999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+|++++|||++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..++++++|||++
T Consensus 99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~ 173 (196)
T 2atv_A 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACT 173 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCCeEEEECCCc
Confidence 99999999999999998888777665543333579999999999997532 222222211 12245899999999
Q ss_pred CC-CHHHHHHHHHHHhhh
Q 030193 163 GE-GLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~-~i~~~~~~i~~~l~~ 179 (181)
|. |++++|++|.+.+.+
T Consensus 174 g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 174 GEGNITEIFYELCREVRR 191 (196)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 99 999999999998765
No 61
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=1.8e-30 Score=184.10 Aligned_cols=159 Identities=20% Similarity=0.359 Sum_probs=125.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+..+ ..+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 56799999999999999999999998876 3456655443 3445544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999999999888876665432 23579999999999997643 222222211 1234578999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 62
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=8.4e-31 Score=183.84 Aligned_cols=159 Identities=20% Similarity=0.321 Sum_probs=122.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||+++|.+..+.. ..++.+.. ...+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 467899999999999999999999988753 34554433 33455544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.+++....|+..+... ...++|+++|+||+|+.+.. ..++..... +..+++++++||+++.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999998888877665442 22579999999999996532 222222211 2234589999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 63
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=8.7e-30 Score=180.28 Aligned_cols=164 Identities=19% Similarity=0.275 Sum_probs=127.8
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCccccccccccccc
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
..+....++|+++|++|||||||+++|.+..+.. ..+|.+..+ ..+...+ +.+.+||+||++++...+..+++.+|
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3444678999999999999999999999888753 445555433 3344444 68999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++++|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCC
Confidence 999999999999999988887777664444579999999999997532 233332222 1234579999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030193 165 GLYEGLDWLSNNIAT 179 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~ 179 (181)
|+++++++|.+.+.+
T Consensus 163 gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 163 NVDKVFFDLMREIRA 177 (206)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 64
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=5.4e-31 Score=184.48 Aligned_cols=162 Identities=20% Similarity=0.343 Sum_probs=121.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcc-ccccccccccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIR-PLWRHYFQNTQ 86 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~-~~~~~~~~~~d 86 (181)
+..+.+||+++|++|+|||||+++|.+..+. ...++.+.. ...+...+ +.+++||+||++++. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 3357799999999999999999999988876 345555543 34455554 789999999999998 78889999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCC-
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG- 163 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~- 163 (181)
++++|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++... + ....+++++++||+++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-F----ADTHSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH-H----HHHcCCEEEEEeCCcCC
Confidence 999999999999999888877776654434679999999999996542 2222221 1 1123457899999999
Q ss_pred --CCHHHHHHHHHHHhhh
Q 030193 164 --EGLYEGLDWLSNNIAT 179 (181)
Q Consensus 164 --~~i~~~~~~i~~~l~~ 179 (181)
.|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887653
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=6.3e-30 Score=178.15 Aligned_cols=160 Identities=19% Similarity=0.292 Sum_probs=126.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+.. ..+|.+... ..+...+ +.+.+||+||++++...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 567999999999999999999999888763 345554443 2344444 689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||+++.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHH
Confidence 99999999999988887776654433579999999999986532 233333222 22345899999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
++++|.+.+.+
T Consensus 171 l~~~l~~~i~~ 181 (187)
T 2a9k_A 171 VFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 66
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-30 Score=183.82 Aligned_cols=159 Identities=18% Similarity=0.347 Sum_probs=124.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+. ...++.+..+ ..+... .+.+++||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45789999999999999999999998875 4456665443 334333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+... .++..... +..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCCCeEEEEECCCCCCHH
Confidence 999999999998888776665432 235799999999999976432 22222211 1123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 67
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.1e-30 Score=181.48 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=111.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE---EEEEECCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||++++.+..+.. ..+|.+..+ ..++...+.+++||+||++++...+..+++++|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 568999999999999999999999887653 345544222 1234456778899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------------HhHHHhhhCCCccCCcc-eEEEE
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRQRH-WYIQS 157 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (181)
|+|++++.++......|...+.... .++|+++|+||+|+.+... .++... ..+..+ .++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~ 159 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-----LKKLIGAPAYIE 159 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-----HHHHHTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-----HHHHcCCCEEEE
Confidence 9999999999988754444444322 3799999999999865421 111111 111123 37999
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
|||++|.|++++++++.+.+.+
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988754
No 68
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9.9e-30 Score=180.59 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=120.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||+++|.+..+.. ..||.+..+ ..+...+ +.+++||+||++++...+..+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 567899999999999999999999988763 345555443 2344444 689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------cCCcce-EEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------LRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~S~ 160 (181)
|+|++++.++......|...+.... +++|+++|+||+|+.+.....+......... ....+. ++++|||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 9999999999988655555544322 4799999999999975422221111111110 011223 7999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|+++++++|.+.+.+
T Consensus 182 ~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 69
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=1.5e-30 Score=184.54 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=119.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEE--ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
..+.+||+++|++|+|||||+++|.++.+. ...+|.+.... .+. ...+.+++||+||++++...+..+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 367899999999999999999999988876 34455543322 222 34467889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------cCCcc-eEEEEcc
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------LRQRH-WYIQSTC 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~S 159 (181)
+|+|++++.++......|...+.... .++|+++|+||+|+.+.....+......... .+..+ .++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 99999999999988755555554432 5799999999999876432222211111110 11112 3699999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 030193 160 ATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l 177 (181)
|++|.|++++++++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998865
No 70
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-31 Score=187.93 Aligned_cols=160 Identities=19% Similarity=0.361 Sum_probs=124.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEE--ECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+. ...++.+... ..+. ...+.+++||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 57899999999999999999999988765 3344444333 3333 35689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.. ....++|+++|+||+|+.+.. ..++.... ....+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEEERVVPTEKGQLL-----AEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHH-----HHHcCCeEEEEECCCCCCHH
Confidence 99999999999888876665544 333579999999999986532 22222111 11224579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 175 ~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 175 QAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 71
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=2.1e-30 Score=180.78 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=120.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+.. +.||.+..+. .+.. ..+.+++||+||+++|...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 567999999999999999999999988763 4566654432 2332 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCccCCcc-eEE
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRH-WYI 155 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~ 155 (181)
|+|++++.++......|...+.... +++|+++|+||+|+.+. ...++.... ++..+ +++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~ 158 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAATY 158 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH-----HHHcCCcEE
Confidence 9999999999888544444333322 47999999999999742 111211111 11112 479
Q ss_pred EEcccC-CCCCHHHHHHHHHHHhhhc
Q 030193 156 QSTCAT-SGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 156 ~~~S~~-~~~~i~~~~~~i~~~l~~~ 180 (181)
++|||+ ++.|++++|+.+.+.+.++
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 999999 6899999999999987654
No 72
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=2.8e-30 Score=182.26 Aligned_cols=158 Identities=20% Similarity=0.377 Sum_probs=123.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEECC-------------------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN------------------------------- 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~~------------------------------- 60 (181)
+..++|+++|++|+|||||+++|++..+. ...+|.+..+. .+...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 56899999999999999999999998876 34556554432 233332
Q ss_pred --------EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 61 --------ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 61 --------~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
..+++||+||++.+...+..+++.+|++++|+|++++.++.....|+..+... .+.|+++|+||+|...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence 78999999999999999999999999999999999999998888777766553 2499999999999432
Q ss_pred -CCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 133 -AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
....++..... +..+++++++||++|.|+++++++|.+.+.++
T Consensus 162 ~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 162 FQVDILEVQKYA-----QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 22333433322 12345899999999999999999999987653
No 73
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=2.2e-30 Score=177.15 Aligned_cols=159 Identities=16% Similarity=0.255 Sum_probs=123.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccce-EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.++.+.. ..++.+.. ...+...+ ..+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999888653 34444432 23344444 5699999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
+|++++.++.....++..+.......+.|+++|+||+|+.+... .++.... .+..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL-----AEEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHH-----HHHhCCCEEEecCCCCcCHHHH
Confidence 99999999999888887776644445799999999999865322 2222211 1112347899999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 74
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=9.7e-31 Score=181.08 Aligned_cols=159 Identities=18% Similarity=0.368 Sum_probs=124.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|++..+. ...++.+... ..+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988776 3455555433 3444544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++..... ...+++++++||+++.|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999988887776654422 25799999999999875432 22222211 1234589999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
No 75
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=1.4e-29 Score=179.08 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=123.5
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
+....+||+++|++|+|||||++++.+..+. ...||.+..+ ..+...+ +.+++||+||++++...+..+++.+|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 3466789999999999999999999998876 3455555443 3344443 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CccCCcce-EEEEc
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQRHW-YIQST 158 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 158 (181)
++|+|++++.++......|...+.... .++|+++|+||+|+.+.....+....... ..++..+. ++++|
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999988655555554322 47999999999999764221111110000 00111233 79999
Q ss_pred ccCCCCCHHHHHHHHHHHhhh
Q 030193 159 CATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~l~~ 179 (181)
||++|.|+++++++|.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987653
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=8.5e-30 Score=180.55 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=123.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC--CEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+.... .+... .+.+++||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 56899999999999999999999998865 44556554443 33333 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+|+|++++.++.....|+..+.... ...++|+++|+||+|+.+... .++...... ...+++++++||++|.|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAIN 161 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCCC
Confidence 9999999999888877766554321 124689999999999975332 223322211 02345799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 162 VEQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987753
No 77
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-30 Score=186.09 Aligned_cols=160 Identities=21% Similarity=0.357 Sum_probs=120.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|.+.. ...+...+ +.+++||+||++++...+..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 56799999999999999999999998876 344555533 34455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|||++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++.... +...+++++++||+++.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTF-----AQENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999888777665432 22579999999999997532 22222221 12234689999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
+++++|.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 78
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.5e-30 Score=180.36 Aligned_cols=161 Identities=19% Similarity=0.340 Sum_probs=120.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+.. ...+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 56789999999999999999999998875 345555433 34455544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+ ......++|+++|+||+|+.+... .++....... -.+++++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i-~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHH-HHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHH-HHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCCCCCCHH
Confidence 999999999998887665443 333335799999999999975332 2222221111 024589999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030193 168 EGLDWLSNNIATK 180 (181)
Q Consensus 168 ~~~~~i~~~l~~~ 180 (181)
+++++|.+.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 79
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=3.3e-31 Score=189.33 Aligned_cols=160 Identities=21% Similarity=0.420 Sum_probs=124.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE--EEEEC------------CEEEEEEEcCCCCCcccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK------------NISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~------------~~~~~~~d~~g~~~~~~~~~ 79 (181)
++.++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+... .+.+++||+||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 56799999999999999999999998875 33455554332 23332 57899999999999999999
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEE
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++|+|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..... +..++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 99999999999999999999988887776654433335799999999999975322 22222211 122357899
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
|||+++.|+++++++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 80
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=182.62 Aligned_cols=159 Identities=21% Similarity=0.334 Sum_probs=118.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+.. ...+...+ +.+++||+||++++...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 56799999999999999999999988875 344555433 34455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++.... ++..++++++|||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRF-----AQENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888776654422 2579999999999996532 22232221 12234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 81
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=178.87 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=115.4
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEECC--EEEEEEEcCCCCCcccccccccccccEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.....++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+...+ +.+++||+||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 3467899999999999999999999998865 34566654432 344444 6788999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCccCCcc-e
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRH-W 153 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~-~ 153 (181)
++|+|++++.++......|...+.... .++|+++|+||+|+.+.. ..++... + .+..+ +
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~ 169 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-L----AEEIKAA 169 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-H----HHHHTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-H----HHhcCCc
Confidence 999999999999988744444333322 479999999999986521 1111111 0 11112 3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
++++|||++|.|++++|+++.+.+.+
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 79999999999999999999987753
No 82
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=2.1e-30 Score=185.25 Aligned_cols=160 Identities=22% Similarity=0.308 Sum_probs=122.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEE--C--C-EEEEEEEcCCCCCcccccccccccccEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY--K--N-ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~--~--~-~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 88 (181)
...+||+++|++|+|||||+++|++..+. ...+|.+........ . . +.+++||+||++.+...+..+++.+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 56799999999999999999999988765 335566655444332 1 1 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
++|+|++++.++.....|+..+... ...++|+++|+||+|+.+... ..+....+ ....+++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEV----LKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHH----TTTCCCEEEEEBTTTTBTTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHH----HHHcCCcEEEEecCCCCCHH
Confidence 9999999999998887766554432 224689999999999976422 12222222 22345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+..
T Consensus 164 ~l~~~l~~~~~~ 175 (218)
T 4djt_A 164 LPFLHLARIFTG 175 (218)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 83
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=4e-31 Score=185.05 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=118.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|||||||+++|++..+. .+.+|.+..+. .+.. ..+.+++||++|++++... ..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 56799999999999999999999998876 44566664432 2333 3478999999999988875 678899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEccc-CCCCC
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCA-TSGEG 165 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~ 165 (181)
|||++++.+|.....|+..+..... ..++|+++|+||+|+.+.. ..++..... +..++++++||| ++|.|
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCcccc
Confidence 9999999999998887766554211 1478999999999996532 222222211 122457999999 89999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
++++|+.+.+.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 84
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=4.4e-30 Score=182.87 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=120.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+. ...||.+..+. .+.. ..+.+++||+||++++...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46799999999999999999999988876 44566654432 2333 34799999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----------CHhHHHhhhCCCccCCcc-eEEEEcc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----------NAAEITDKLGLHSLRQRH-WYIQSTC 159 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~S 159 (181)
|||++++.++......|...+.... +++|+++|+||+|+.+.. ..++.... ....+ .++++||
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~S 160 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL-----RKQIGAAAYIECS 160 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH-----HHHHTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH-----HHHcCCceEEEcc
Confidence 9999999999988744444444322 479999999999986532 12221111 11112 3799999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 030193 160 ATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~ 179 (181)
|++|.|++++|+++.+.+.+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999988754
No 85
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=4e-30 Score=179.09 Aligned_cols=164 Identities=17% Similarity=0.204 Sum_probs=121.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++|+|||||+++|.+..+. ...+|.+... ..+... .+.+++||+||++++...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 45789999999999999999999988875 3455554333 223333 4678899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CccCCcc-eEEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQRH-WYIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~S~ 160 (181)
|+|++++.++......|...+.... .+.|+++|+||+|+.+.....+....... ...+..+ ++++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 9999999999988754444444322 37999999999998654211111111000 0111123 38999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++++++.+.+..
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 86
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=1.9e-29 Score=172.22 Aligned_cols=158 Identities=19% Similarity=0.291 Sum_probs=121.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEEEE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... .+.+++||+||++++...+..+++.+|++++|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 5799999999999999999999887753 344544332 223333 467899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHH
Q 030193 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 171 (181)
|++++.++.....|+..+.......++|+++|+||+|+.+... .++..... +..+++++++|+++|.|++++++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA-----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEEECTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHH
Confidence 9999999988877776655433334799999999999876432 22222211 11234799999999999999999
Q ss_pred HHHHHhhh
Q 030193 172 WLSNNIAT 179 (181)
Q Consensus 172 ~i~~~l~~ 179 (181)
++.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998765
No 87
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=5e-30 Score=182.03 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=120.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceEE-EEEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||+++|.+..+.. +.+|.+..+. .+.. ..+.+++||+||+++|...+..+++.+|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 567999999999999999999999988763 4566654442 2332 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCccCCcc-eEE
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRH-WYI 155 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~ 155 (181)
|||++++.+|......|...+.... .+.|+++|+||+|+.+. ...++.... ++..+ +++
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~ 179 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAATY 179 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH-----HHHcCCCEE
Confidence 9999999999888444444333322 47999999999999642 111111111 11112 479
Q ss_pred EEcccC-CCCCHHHHHHHHHHHhhhc
Q 030193 156 QSTCAT-SGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 156 ~~~S~~-~~~~i~~~~~~i~~~l~~~ 180 (181)
++|||+ ++.|++++|+.+.+.+.++
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 999999 6899999999999987654
No 88
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=1.6e-29 Score=175.44 Aligned_cols=162 Identities=14% Similarity=0.248 Sum_probs=112.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEEC---CEEEEEEEcCCCCCcccccccccccccE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
....++|+++|++|+|||||++++.+..+. ...++.+.. ...+... ...+++||+||++++...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 356899999999999999999999998865 344555433 3344433 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+++|+|++++.++.....|+..+... ....++|+++|+||+|+.... ..++...... ...+++++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 99999999999998888777665432 122578999999999985431 2222222111 0124578999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+|.|+++++++|.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 89
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=182.71 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=103.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEEC--CEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+.++|+++|++|+|||||+++|.+..+.. ..+|....+ ..+... .+.+++||+||++++...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 467999999999999999999999988753 445554333 223333 4689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCccCCcce-EEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S~ 160 (181)
|+|++++.++......|...+.... .++|+++|+||+|+.+.....+...... ....+..+. ++++|||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 9999999999988754444444322 4789999999999976422211111000 001111233 8999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|+++++++|.+.+.+
T Consensus 191 ~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8.3e-30 Score=175.21 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=121.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||++++.+..+. ...++.+..... +.. ..+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999998765 345555544332 222 336899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|++++.++.....++..+.... ...+.|+++|+||+|+.+.... ++... + ....+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-L----ARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-H----HHHhCCeEEEecCCCCcCHHH
Confidence 99999998888877776554321 1247899999999998654322 22111 1 112345899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030193 169 GLDWLSNNIATK 180 (181)
Q Consensus 169 ~~~~i~~~l~~~ 180 (181)
++++|.+.+..+
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999877643
No 91
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=3.8e-30 Score=184.45 Aligned_cols=160 Identities=21% Similarity=0.345 Sum_probs=125.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEE--EE--CCEEEEEEEcCCCCCcccccccccccccE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|||||||+++|+.+.+. ...++.+...... .. ..+.+++||+||++.+...+..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 3467899999999999999999998766654 3456665444332 22 45789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+++|+|++++.++.....|+..+.... .++|+++|+||+|+.+.....+ .....+..++++++|||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999998888777665532 4789999999999976433221 112223345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
+++++|.+.+..
T Consensus 164 ~l~~~l~~~l~~ 175 (221)
T 3gj0_A 164 KPFLWLARKLIG 175 (221)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 92
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.2e-30 Score=182.58 Aligned_cols=159 Identities=15% Similarity=0.163 Sum_probs=117.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--cccccCcccceE--EEEEECC--EEEEEEEcCCCCC-cccccccccccccE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~-~~~~~~~~~~~~d~ 87 (181)
...+||+++|++|+|||||+++|.+.. +....++++... ..+...+ +.+.+|||+|+++ +......+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456899999999999999999999644 334344444332 3344444 5678999999887 55567778899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|||++++.+|+....|+..+.......++|+++|+||+|+.+.. ..++... + +...++++++|||++|.|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-~----a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-C----AVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-H----HHHcCCEEEEEeCCCCCC
Confidence 99999999999999998887766543333579999999999996532 2222111 1 112245799999999999
Q ss_pred HHHHHHHHHHHhh
Q 030193 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 i~~~~~~i~~~l~ 178 (181)
++++|+++.+.+.
T Consensus 190 v~elf~~l~~~i~ 202 (211)
T 2g3y_A 190 VKELFEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
No 93
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=4.9e-31 Score=186.25 Aligned_cols=157 Identities=23% Similarity=0.417 Sum_probs=117.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcc--cceEEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI--GFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~--~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+.. ..++. +.....+...+ +.+++||+||++++...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 457999999999999999999999988653 33433 34445555555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCccCCcceEEEEcccCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+|+|++++.++.....|+..+.. ....++|+++|+||+|+.+.. ..+++...+ +++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDR-YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHS-CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-hccCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 99999999999998887766544 333579999999999986532 222333322 3468899999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030193 165 GLYEGLDWLSNNIATK 180 (181)
Q Consensus 165 ~i~~~~~~i~~~l~~~ 180 (181)
|++++|++|.+.+.++
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887764
No 94
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=4.5e-29 Score=174.66 Aligned_cols=160 Identities=18% Similarity=0.290 Sum_probs=112.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+.. ..++.+... ..+...+ +.+++||+||++++...+..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 567899999999999999999999887653 344444333 2344443 679999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||+++.|++++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 99999999998887776655443222479999999999987632 222222211 112347899999999999999
Q ss_pred HHHHHHHhhh
Q 030193 170 LDWLSNNIAT 179 (181)
Q Consensus 170 ~~~i~~~l~~ 179 (181)
+++|.+.+.+
T Consensus 174 ~~~l~~~~~~ 183 (190)
T 3con_A 174 FYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=5.1e-30 Score=180.65 Aligned_cols=163 Identities=20% Similarity=0.279 Sum_probs=114.5
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcccccC----cccceEEEEE-ECCEEEEEEEcCCCCCccccc---ccccc
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVE-YKNISFTVWDVGGQDKIRPLW---RHYFQ 83 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----t~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~---~~~~~ 83 (181)
.+.++.+||+++|++|||||||++++.+........ +.......+. ...+.+++||++|+++|.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 445789999999999999999999888764433222 1212222222 355899999999999987776 78999
Q ss_pred cccEEEEEEECCCc--ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHh----hhCCCccCCcce
Q 030193 84 NTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITD----KLGLHSLRQRHW 153 (181)
Q Consensus 84 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~----~~~~~~~~~~~~ 153 (181)
++|++|+|||+++. +++.....|+...... ..++|+++|+||+|+.+... ..++.. .+........++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999986 5666666666654321 25799999999999875321 112211 121222225678
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHh
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
++++|||++ .|++++|+.+.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 999999999 99999999999876
No 96
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.3e-29 Score=177.20 Aligned_cols=160 Identities=16% Similarity=0.219 Sum_probs=122.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEE-EEE--CCEEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||+++|.+..+. ...+|.+..... +.. ..+.+++||+||++++...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 56799999999999999999999998775 345565544322 222 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
|+|++++.++.....++..+.... ...++|+++|+||+|+.+... .++... + ....+++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-V----AQEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-H----HHHhCCeEEEEecCCCCCHHH
Confidence 999999999888877665443311 124689999999999976432 222221 1 112345799999999999999
Q ss_pred HHHHHHHHhhh
Q 030193 169 GLDWLSNNIAT 179 (181)
Q Consensus 169 ~~~~i~~~l~~ 179 (181)
++++|.+.+..
T Consensus 161 l~~~l~~~~~~ 171 (199)
T 2gf0_A 161 LFQELLTLETR 171 (199)
T ss_dssp HHHHHHHHCSS
T ss_pred HHHHHHHHHhh
Confidence 99999997754
No 97
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=7.8e-30 Score=180.69 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=93.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCccc--ceEEEEEEC----CEEEEEEEcCCCCCcccccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIG--FNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~-~~~~t~~--~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~ 85 (181)
...++|+++|++|+|||||+++|.+. .+. ...+|.+ .....+... .+.+++||+||++++...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56789999999999999999999998 655 4456665 333445555 57899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCC-C--CCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPN-A--MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
|++++|+|++++.++.....|+..+..... ..++|+++|+||+|+.+ . ...++..... +..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence 999999999999999998877766654322 14799999999999976 2 2223332221 122468999999
Q ss_pred CC-CCCHHHHHHHHHHHhhh
Q 030193 161 TS-GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~-~~~i~~~~~~i~~~l~~ 179 (181)
++ +.|+++++++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987653
No 98
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=7.6e-28 Score=166.53 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=119.9
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-ccC--cccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+.++|+++|++|+|||||+++|.+..+.. ..+ +.+.....+...+..+++||+||++++...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34678999999999999999999999988753 333 334445567778899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-C-ccCCc--ceEEEEcccCCCCC
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-H-SLRQR--HWYIQSTCATSGEG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~S~~~~~~ 165 (181)
+|+|+++...... .+.+..... .++|+++|+||+|+.+. ..+++...+.. . ..... .+++++|||++|.|
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999987432222 222322222 47899999999999764 33333333221 1 11222 37899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
+++++++|.+.+..
T Consensus 158 v~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 158 LDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987653
No 99
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=5e-29 Score=175.18 Aligned_cols=159 Identities=15% Similarity=0.155 Sum_probs=113.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--cccccCcccceE--EEEEECC--EEEEEEEcCCCCC-cccccccccccccE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~-~~~~~~~~~~~~d~ 87 (181)
...+||+++|++|||||||+++|.+.. +....++++... ..+...+ +.+.+||++|.++ ++..+..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456899999999999999999999643 333334443332 3344444 5778999999876 55667788889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
+++|||++++.+|.....|+..+.......++|+++|+||+|+.+.. ..++... + ....++++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~-~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA-X----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH-H----HHHhCCceEEeccccCCC
Confidence 99999999999999988877665442223578999999999986432 2222111 1 111235789999999999
Q ss_pred HHHHHHHHHHHhh
Q 030193 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 i~~~~~~i~~~l~ 178 (181)
++++|+++.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.8e-29 Score=176.16 Aligned_cols=161 Identities=18% Similarity=0.278 Sum_probs=113.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCcccceEEEEE-------ECCEEEEEEEcCCCCCccccccccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVETVE-------YKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~--~~~-~~~~t~~~~~~~~~-------~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 86 (181)
.+||+++|++|||||||+++|.+. .+. .+.+|.+..+.... ...+.+++||++|+++|...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 333 34667776654432 24678999999999999999999999999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcce----EEEEcccC
Q 030193 87 GLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW----YIQSTCAT 161 (181)
Q Consensus 87 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~S~~ 161 (181)
++++|+|++++ .++.....|+..+.... ++.|+++|+||+|+.+.....+..........+..++ +++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999886 47888877776654321 4789999999999875422211111111111122233 48999999
Q ss_pred CCC-CHHHHHHHHHHHhhh
Q 030193 162 SGE-GLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~-~i~~~~~~i~~~l~~ 179 (181)
++. |++++++.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 996 999999999887653
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=9e-31 Score=185.47 Aligned_cols=163 Identities=19% Similarity=0.232 Sum_probs=122.4
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccceE---EEEEECCEEEEEEEcCCCCCcccccccccccccEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.+..+.. ..+|.+... ..++...+.+++||+||++++...+..+++++|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 3678999999999999999999999887653 344443222 123445578889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---------HHHhhhCCCccCCcce-EEEEcc
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---------EITDKLGLHSLRQRHW-YIQSTC 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~S 159 (181)
+|+|++++.++......|...+.... .++|+++|+||+|+.+..... .+........++..+. ++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 99999999999888755555554432 379999999999997542211 1111122222333454 799999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 030193 160 ATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l 177 (181)
|++|.|+++++++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=9.9e-29 Score=184.59 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=116.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc----ccCcccceEEEEEECCEEEEEEEcCCCCCccc---ccccccccccEEEEE
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---LWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~d~~i~v 91 (181)
||+++|+.|+|||||++++.++.+.. ..||.+..+..++ ..+++++|||+|+++|+. .+..|+++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988765442 4678888776663 458999999999999975 368899999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccC----CcceEEEEcccC
Q 030193 92 VDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLR----QRHWYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~S~~ 161 (181)
||++++ +.....+|.+++.. ...+++|+++++||+|+.++.. ..++....+...++ +.++++++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999976 44444555443321 1125799999999999976432 12333333222233 357899999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
+ .|+.++|..+++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999887653
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=6.4e-28 Score=173.73 Aligned_cols=168 Identities=13% Similarity=0.097 Sum_probs=112.4
Q ss_pred Hhhhc--cccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCC------Cc---c
Q 030193 10 SKLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQD------KI---R 75 (181)
Q Consensus 10 ~~~~~--~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~------~~---~ 75 (181)
...|. .+.++|+++|++|+|||||+++|++..+. ...+ |.......+...+..+.+|||||+. +. .
T Consensus 20 ~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 99 (228)
T 2qu8_A 20 QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEM 99 (228)
T ss_dssp --CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHH
T ss_pred ccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHH
Confidence 34444 57899999999999999999999998875 2222 4455555667788999999999983 31 1
Q ss_pred cccccccccccEEEEEEECCCcccHHH--HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcc-
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH- 152 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~- 152 (181)
..+..++..+|++++|+|++++.++.. ...++..+ ... ..++|+++|+||+|+.+...................+
T Consensus 100 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l-~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 100 TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI-KSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHH-HTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHH-HHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 112344678899999999998877642 22334333 322 1379999999999997643322111101011111222
Q ss_pred -eEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 153 -WYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 153 -~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++++|||++|.|+++++++|.+.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988754
No 104
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=8.3e-28 Score=168.80 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=109.0
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc--ceEEEEEECCEEEEEEEcCC----------CCCccccc
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVWDVGG----------QDKIRPLW 78 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~ 78 (181)
.+....++|+++|++|+|||||+++|++..+. ...++.+ .....+.. +..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34467899999999999999999999998743 2233222 11222222 33799999999 56666667
Q ss_pred ccccccc---cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCccCCc
Q 030193 79 RHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSLRQR 151 (181)
Q Consensus 79 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~ 151 (181)
..+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+.+..... ++...+. ...
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~ 167 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----IDP 167 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----CCT
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----ccC
Confidence 7777766 9999999998877665532 2223322 478999999999998754433 2332232 234
Q ss_pred ceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 152 HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+++++++||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999998765
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=6.8e-27 Score=160.37 Aligned_cols=147 Identities=22% Similarity=0.287 Sum_probs=107.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCccc------ccccccc--cc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYFQ--NT 85 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~~--~~ 85 (181)
.++|+++|++|+|||||+++|.+..+. ...| |.+.....+...+..+++|||||++++.. ....+++ ++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 579999999999999999999987653 3344 33444555677789999999999987752 3355554 79
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+++++|+|+++.+ ....|+..... .+.|+++|+||+|+.... ..+++...++ ++++++||+
T Consensus 83 ~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA~ 147 (165)
T 2wji_A 83 DLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSAA 147 (165)
T ss_dssp SEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBGG
T ss_pred CEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEcC
Confidence 9999999998754 33344444433 368999999999985321 2334444333 468999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030193 162 SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~ 178 (181)
+|.|++++|+++.+.+.
T Consensus 148 ~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 148 KKMGIEELKKAISIAVK 164 (165)
T ss_dssp GTBSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998764
No 106
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=1.9e-27 Score=161.85 Aligned_cols=147 Identities=20% Similarity=0.263 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC-------ccccccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~~d 86 (181)
+||+++|++|+|||||++++.+..+. ...+ +.+.....+...+..+.+||+||++. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 68999999999999999999988743 2222 33455566777888999999999877 3445566788999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcce-EEEEcccCCCCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSGEG 165 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 165 (181)
++++|+|+++..+. ...++...+.. .+.|+++|+||+|+.+.. ++... + ...++ +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~-~-----~~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGP-L-----YGLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGG-G-----GGGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccch--HhHHH-H-----HhCCCCCeEEEecccCCC
Confidence 99999999875433 22344444443 468999999999987541 11111 1 12233 588999999999
Q ss_pred HHHHHHHHHHHh
Q 030193 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~~~~~i~~~l 177 (181)
++++++++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998875
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=2.4e-27 Score=163.78 Aligned_cols=152 Identities=19% Similarity=0.246 Sum_probs=109.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc--------ccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 82 (181)
....+|+++|++|+|||||+++|.+..+. ...+ |.+.....+...+..+++|||||..++... ...++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 34689999999999999999999987642 2233 334445567778888999999998754321 11356
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.++. ...|+..+.. ....++|+++|+||+|+.+.. .......+.++++|||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIA-RLPAKLPITVVRNKADITGET----------LGMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHH-HSCTTCCEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHH-hcccCCCEEEEEECccCCcch----------hhhhhccCCceEEEeCCC
Confidence 8999999999999887765 3345444333 222479999999999985421 111122356899999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
|.|+++++++|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999998764
No 108
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=1.6e-27 Score=167.05 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=110.3
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceEE-EEEECCEEEEEEEcCC----------CCCccccccc
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG----------QDKIRPLWRH 80 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g----------~~~~~~~~~~ 80 (181)
.+....++|+++|++|+|||||+++|++..+....++.+.... .....+..+.+||+|| ++.+...+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3446788999999999999999999999885544444332221 1222345788999999 5556666666
Q ss_pred ccccc---cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCC-cceEEE
Q 030193 81 YFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQ 156 (181)
Q Consensus 81 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 156 (181)
+++.+ +++++|+|+.+..+.... .+...+.. .++|+++|+||+|+.+....+....... ..+.. ..++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~ 171 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHR-KVFSKYGEYTII 171 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHH-HHHHSSCCSCEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHH-HHHhhcCCCceE
Confidence 66655 999999999765433222 22222222 2689999999999986544333322221 11111 245799
Q ss_pred EcccCCCCCHHHHHHHHHHHhhh
Q 030193 157 STCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
++||++|.|++++++++.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999998865
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=1.3e-26 Score=175.03 Aligned_cols=165 Identities=17% Similarity=0.203 Sum_probs=121.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE-EEEEECC--EEEEEEEcCCCCCcccccccccccccEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...++|+++|++|+|||||++++.++.+. ...+|++..+ ..+...+ +.+++||+||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 56799999999999999999999988875 3455554333 2334444 567799999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------ccCCcce-EEEEccc
Q 030193 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~S~ 160 (181)
|+|++++.++......|...+.... .++|+++|+||+|+.+.....+........ ..+..+. ++++|||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999999888754544444322 379999999999986532111111110000 0111233 8999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 030193 161 TSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~~ 180 (181)
++|.|++++++.|.+.+..+
T Consensus 312 ~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999987654
No 110
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-27 Score=174.86 Aligned_cols=160 Identities=12% Similarity=0.108 Sum_probs=113.9
Q ss_pred cccceEEEEcCC---------CCChHHHHhhhhc---CCcc-cccCcc-cceE------------------EEEEECCEE
Q 030193 15 KKEMRILMVGLD---------AAGKTTILYKLKL---GEIV-TTIPTI-GFNV------------------ETVEYKNIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~---------~~GKSsli~~l~~---~~~~-~~~~t~-~~~~------------------~~~~~~~~~ 62 (181)
...+||+++|++ |||||||+++|++ ..+. ...+|+ +..+ ..++...+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 667999999999 9999999999998 4443 334433 2111 013445688
Q ss_pred EEEEE-----------------------cCCCCCcccccccccc---------------------cccEEEEEEECCCc-
Q 030193 63 FTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTQGLIFVVDSNDR- 97 (181)
Q Consensus 63 ~~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~- 97 (181)
+++|| ++|+++|...+..+++ ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888888888887 79999999999998
Q ss_pred -ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 98 -DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 98 -~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
.+|+.+..|+..+.......++|+++|+||+|+.+....++....... ..++++++|||++|.|++++|++|.+.
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 899998888776654322247999999999998653222222221111 124579999999999999999999987
Q ss_pred hh
Q 030193 177 IA 178 (181)
Q Consensus 177 l~ 178 (181)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=5.2e-27 Score=175.95 Aligned_cols=161 Identities=22% Similarity=0.252 Sum_probs=119.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC--cc--cccCcccceEEEEEE-CCEEEEEEEcCCCCCc-----ccccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~-----~~~~~~~~~~~ 85 (181)
..+||+++|++|||||||+++++++. +. ...+|.+..+..+.. +++.+++||+||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 36899999999999999999998873 32 356788888777775 5789999999999988 67888889999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHH--hcCCCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCccCCc---ceEEEE
Q 030193 86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNAMNAAE---ITDKLGLHSLRQR---HWYIQS 157 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~ 157 (181)
|++++|+|++++.++.....|...+ +... .+++|+++|+||+|+.+.....+ ..........+.. .+++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 9999999999999998886543221 2111 25799999999999976211110 1111111111222 368999
Q ss_pred cccCCCCCHHHHHHHHHHHhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~ 178 (181)
|||++ .|+.+++..+.+.+.
T Consensus 161 tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTTC
T ss_pred eeecC-ChHHHHHHHHHHHHc
Confidence 99999 899999998887653
No 112
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=6.2e-28 Score=168.61 Aligned_cols=160 Identities=18% Similarity=0.238 Sum_probs=111.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEEECCEEEEEEEcCC-----------CCCccccccccccc-
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYFQN- 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~~~- 84 (181)
++|+++|++|+|||||++++.+..+. ...|+.......+... .+++||+|| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999998865 3455555544455544 789999999 55666677777766
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHH---------HhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcce
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHR---------MLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~---------~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (181)
++++++|+++.+..++......|.. ........++|+++|+||+|+.+.. ..+++...++.. +.+...
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhccCC
Confidence 6666666666555667665333322 1111111479999999999997643 234455555442 112234
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 154 YIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
++++|||++|.|++++++++.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999987643
No 113
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=2.5e-27 Score=169.73 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=111.2
Q ss_pred hhhccccceEEEEcCCCCChHHHHhhhhcCCc---ccccC--cccceEEEEE-ECCEEEEEEEcCCCCC----------c
Q 030193 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEI---VTTIP--TIGFNVETVE-YKNISFTVWDVGGQDK----------I 74 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~--t~~~~~~~~~-~~~~~~~~~d~~g~~~----------~ 74 (181)
..+....++|+++|++|+|||||+|+|++... ....+ |.......+. ..+..+.+|||||... +
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 34446789999999999999999999999872 22233 3333333343 3468899999999532 3
Q ss_pred cccccccccc---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH----hhhCCC-
Q 030193 75 RPLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT----DKLGLH- 146 (181)
Q Consensus 75 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~----~~~~~~- 146 (181)
...+..+++. +|++++|+|+.+..+ .....+...+.. .++|+++|+||+|+.+.....+.. ..+...
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 4445555555 788999999986433 333444455544 478999999999997643322222 111100
Q ss_pred -ccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 147 -SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 147 -~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
......++++++||++|.|+++++++|.+.+..
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 001245789999999999999999999998764
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.1e-25 Score=157.05 Aligned_cols=151 Identities=22% Similarity=0.274 Sum_probs=113.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCc--ccceEEEEEECCEEEEEEEcCCCCCcc------cccccccc--
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ-- 83 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~-- 83 (181)
.+.++|+++|++|+|||||+++|.+..+. ...|+ .+.....+...+..+++|||||++.+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 45789999999999999999999987643 33443 334455677788999999999998875 33555554
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.++++++|+|+.+ +.....|+..... .+.|+++|+||+|+... ...+++...++ ++++++|
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~S 149 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLS 149 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECB
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEE
Confidence 4999999999974 4555555555443 47899999999998542 23344444443 3689999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 030193 160 ATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|+++.|++++++++.+.+.++
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999887653
No 115
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.93 E-value=1.9e-26 Score=162.64 Aligned_cols=159 Identities=18% Similarity=0.338 Sum_probs=119.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccce--EEEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|||||||++++.+..+. ...||.+.. ...+...+ +.+++||++|+++++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45689999999999999999999998875 345555433 33455554 67889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|+.+..++.....|+..+.. ....+.|+++++||+|+.+.. ..++.+. + +...++.++++|++++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l----~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRD-HADSNIVIMLVGNKSDLRHLRAVPTDEARA-F----AEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEECcccccccCcCHHHHHH-H----HHHcCCeEEEEeCCCCCCHH
Confidence 99999998888877776654432 122478999999999996532 2222221 1 12234578999999999999
Q ss_pred HHHHHHHHHhhh
Q 030193 168 EGLDWLSNNIAT 179 (181)
Q Consensus 168 ~~~~~i~~~l~~ 179 (181)
++++++.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=3.9e-25 Score=161.89 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=112.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCccccc------cccc--c
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW------RHYF--Q 83 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~------~~~~--~ 83 (181)
.+.++|+++|++|+|||||+|+|++..+. ...| |.+.....+...+..+++||+||+..+...+ ..++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999999998764 3344 4444555677788999999999998776532 4454 5
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceEEEEcc
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+|++++|+|+++.++. ..++..... .++|+++|+||+|+.+. ...+++...++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 79999999999876543 234444433 37999999999998542 12344544443 4789999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
|++|.|++++++++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998764
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=4.3e-25 Score=165.59 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=116.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc--ccC--cccceEEEEEEC-CEEEEEEEcCCCCCcc----------cc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYK-NISFTVWDVGGQDKIR----------PL 77 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~--t~~~~~~~~~~~-~~~~~~~d~~g~~~~~----------~~ 77 (181)
++...-.|+++|.+|||||||+|+|++..+.. ..+ |.......+... +..+.+|||||+..+. ..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 33556789999999999999999999988652 222 333344456667 8999999999986654 45
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCccCCcceEEE
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
+..+++.+|++++|+|+++..++.....|+ ..+.. .++|+++|+||+|+. +.....+....+.... ....+++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~-~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~ 159 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQ-NFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIV 159 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHH-HHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEE
Confidence 667788999999999999887776654434 44443 478999999999997 4433333322221110 0123689
Q ss_pred EcccCCCCCHHHHHHHHHHHhhh
Q 030193 157 STCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
++||++|.|++++++++.+.+..
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEeCCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999988753
No 118
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=4.2e-25 Score=164.97 Aligned_cols=154 Identities=18% Similarity=0.101 Sum_probs=112.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC--------cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 83 (181)
+..+|+++|.+|+|||||+|+|++..+. +..| |.......+...+.++++|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 4557999999999999999999998864 2333 22322334566789999999999876 3445667789
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.+|++++|+|+++..+. ...++.+.+.... .+.|+++|+||+|+.+... ..+....+ . ...+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~-----~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTP--EDELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL-L-----PEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCH--HHHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT-S-----TTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCCh--HHHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh-c-----CcCcEEEEeCCC
Confidence 99999999999876443 3456555555432 3799999999999875433 23333333 1 123689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
|.|++++++.+.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999988664
No 119
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=1.8e-25 Score=165.04 Aligned_cols=148 Identities=20% Similarity=0.220 Sum_probs=110.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCcccc----------ccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~~ 82 (181)
.+++|+++|.+|+|||||+|+|++..+. ...| |.+.....+...+..+.+|||||+..+... +..++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4689999999999999999999998754 3344 444555667777889999999998876632 22232
Q ss_pred --ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCccCCcceEEE
Q 030193 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
+.+|++++|+|+++.++......++.+ .++|+++|+||+|+.+.. ..+.+...++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLE-------LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHH-------HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHh-------cCCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 689999999999876544433333332 269999999999986532 2344444443 4689
Q ss_pred EcccCCCCCHHHHHHHHHHHhh
Q 030193 157 STCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
++||++|.|++++++++.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988664
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=3e-25 Score=162.33 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=108.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCccc----------cccccc--
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHYF-- 82 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~-- 82 (181)
.+|+++|.+|||||||+|+|++.... ...| |.+.....+...+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 58999999999999999999998753 3444 44455666777889999999999877764 345566
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCccCCcceEEEEc
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+.+|++++|+|+++.++..... ..+.. .++|+++|+||+|+.... ..+.+...++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~----~~l~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLT----SQLFE---LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHH----HHHTT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHH----HHHHH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 7899999999998754443322 23333 379999999999986432 2334444443 479999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 030193 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~ 176 (181)
||++|.|++++++++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999875
No 121
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=5.1e-25 Score=154.49 Aligned_cols=157 Identities=17% Similarity=0.328 Sum_probs=119.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECC--EEEEEEEcCCCCCcccccccccccccEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|||||||++++.+..+. .+.||.+... ..+...+ +.+++||++|.+++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34689999999999999999999998875 4556665443 3455555 56678999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCccCCcceEEEEcccCCCCCHH
Q 030193 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 167 (181)
+|+|+.+..++++...|+..... ....+.|+++++||+|+.+.. ..++.+. + +...++.++++|++++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l----~~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRD-HADSNIVIMLVGNKSDLRHLRAVPTDEARA-F----AEKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHH
Confidence 99999998888877766654332 122468999999999986532 2222221 1 12234578999999999999
Q ss_pred HHHHHHHHHh
Q 030193 168 EGLDWLSNNI 177 (181)
Q Consensus 168 ~~~~~i~~~l 177 (181)
++++.+.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=9.5e-25 Score=160.84 Aligned_cols=147 Identities=17% Similarity=0.236 Sum_probs=106.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc-ccccCc--ccceEEEEEECCEEEEEEEcCCCCCcc------cccccccc--c
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPT--IGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t--~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~ 84 (181)
+.++|+++|++|||||||+|+|++... ....|. .+.....+.. +..+++|||||+..+. ..+..++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 367999999999999999999998763 344453 3333333433 6789999999998775 34455554 5
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+|++++|+|+++.++. ..++..... .++|+++|+||+|+... ...+.+...++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 9999999999875433 333333333 47999999999998532 23344444443 46899999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
++|.|++++++++.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988654
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=3e-24 Score=168.98 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=97.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCCccccc--------cccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 82 (181)
++.++|+++|++|+|||||+|+|++... .+..+ |.+.....+...+..+++|||||...+...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 5678999999999999999999999863 33334 4445556778889999999999987765433 3467
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCccCCcceEEEEccc
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--ITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+.+|++++|+|++++.++..... +..++... .++|+++|+||+|+........ +... . ..+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTE-IRELKAAH--PAAKFLTVANKLDRAANADALIRAIADG-T-------GTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH-H-------TSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc-C-------CCceEEEEE
Confidence 89999999999998877643211 11222211 2689999999999976543321 2221 0 136889999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
++|.|+++++++|.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998875
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=2.1e-25 Score=174.49 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=112.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCC----------CCcccccc-c
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQ----------DKIRPLWR-H 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~~~-~ 80 (181)
..++|+++|++|+|||||+|+|++.... +..+ |.+.....+...+..+++|||||+ +.|...+. .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 5689999999999999999999998753 3333 444445567778889999999997 34443333 4
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++.+|++++|+|+++..+++.. .++ ..+.. .++|+++|+||+|+.+... .+++..............+++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~-~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIA-GYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHH-HHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHH-HHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 67889999999999988776654 333 33332 4799999999999986543 23333222211112234579999
Q ss_pred ccCCCCCHHHHHHHHHHHhhh
Q 030193 159 CATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 159 S~~~~~~i~~~~~~i~~~l~~ 179 (181)
||++|.|++++++.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.91 E-value=1.1e-24 Score=174.39 Aligned_cols=155 Identities=21% Similarity=0.318 Sum_probs=106.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceEEEEE------------ECCEEEEEEEcCCCCCcccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE------------YKNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~------------~~~~~~~~~d~~g~~~~~~~~~~~ 81 (181)
...+||+++|.+|||||||++++++..+. ...+|.+..+.... ..+..+++||+||++.+...+..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 56799999999999999999999998875 44567766655331 235899999999999999999999
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEEcc
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
++.+|++++|+|+++.+.... |+..+ .... .+.|+++|+||+|+.+... .++..... ...+.+++++|
T Consensus 119 l~~~d~ii~V~D~s~~~~~~~---~~~~l-~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vS 188 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTDSNKHY---WLRHI-EKYG-GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAIENRFHRIS 188 (535)
T ss_dssp HHSSEEEEEEECGGGGGGHHH---HHHHH-HHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGGTTCEEECC
T ss_pred ccCCcEEEEEEeCCCchhHHH---HHHHH-HHhC-CCCCEEEEEECCCcccccccCHHHHHHHH-----HhcCCceEEEe
Confidence 999999999999986654433 33332 2211 3689999999999976433 33333322 12234699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 030193 160 ATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~~ 179 (181)
|++|.|++++++.+.+.+.+
T Consensus 189 A~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp C-----CTTHHHHHHHHHTC
T ss_pred cCcccCHHHHHHHHHHHHhc
Confidence 99999999999999987754
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=8.2e-24 Score=156.00 Aligned_cols=150 Identities=22% Similarity=0.236 Sum_probs=113.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEECCEEEEEEEcCCCCCccc------cccccc--cc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYF--QN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~ 84 (181)
..++|+++|++|+|||||+|+|++..+. ...| |.+.....+...+..+.+||+||+..+.. .+..++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 3689999999999999999999998764 3344 34444556777889999999999987766 455555 67
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+|++++|+|+++. .....++...... ..+|+++|+||+|+.+. .....+.+.++ ++++++|+
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBG
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEe
Confidence 9999999999864 3344445554442 23999999999997532 23445555554 36899999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|.|++++++.+.+.+..
T Consensus 148 ~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987653
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=3.6e-26 Score=163.24 Aligned_cols=117 Identities=25% Similarity=0.341 Sum_probs=94.7
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCccc----ccCcccceEEEEEECCEEEEEEEcCCCCCccccccccccc----c
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----T 85 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~ 85 (181)
....++|+++|++|+|||||+++|.+..+.. ..++....+ ....+++||+||++.++..+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4678999999999999999999999987643 233332222 56789999999999999888888877 8
Q ss_pred cEEEEEEECC-CcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCC
Q 030193 86 QGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 86 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~ 135 (181)
|++++|+|++ ++.++.....++..++... ...++|+++|+||+|+.+...
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 9999999999 8889998888888776532 125799999999999987654
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=3e-24 Score=166.46 Aligned_cols=160 Identities=16% Similarity=0.081 Sum_probs=113.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCccccc----Ccc--------------cc-----eEEEEEECCEEEEEEEcCC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTI--------------GF-----NVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----~t~--------------~~-----~~~~~~~~~~~~~~~d~~g 70 (181)
.+..++|+++|++|+|||||+++|++....... .+. +. ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 467899999999999999999999985432100 000 00 0000011237899999999
Q ss_pred CCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCC
Q 030193 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLH 146 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~----~~~~~~~~ 146 (181)
|++|...+..++..+|++++|+|+.+..++....+++...... ...|+++|+||+|+.+....++ +...+.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~-- 159 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK-- 159 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT--
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999998776566666655443221 2358999999999986543222 222221
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.....+++++++||++|.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 11223568999999999999999999998764
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=4.8e-25 Score=170.97 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=108.8
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc--cc--cCcccceEEEEEECCE-EEEEEEcCCCCCcccc-------ccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPL-------WRH 80 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~-------~~~ 80 (181)
+....++|+++|++|+|||||+++|++..+. +. ..|.+.....+...+. .+++|||||++++... +..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 4467899999999999999999999998763 22 2255566667777665 9999999999877654 234
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
++..+|++++|+|+... .....|+. .+.. .++|+++|+||+|+.+.... +....+. +..+++++++||
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~-~l~~---~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSA 177 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVN-LFKE---MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSA 177 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHH-HHHH---TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSS
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHH-HHHh---cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEEC
Confidence 77889999999999322 22233333 3333 37999999999999876544 2222222 233467899999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
++|.|+++++++|.+.+.
T Consensus 178 ktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCTTSTTTHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999999874
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=8e-24 Score=166.65 Aligned_cols=151 Identities=25% Similarity=0.348 Sum_probs=114.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCC-Cccc--------ccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQD-KIRP--------LWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~-~~~~--------~~~~~ 81 (181)
++.++|+++|.+|+|||||+|+|++.+. .+..| |.+.....+...+..+++|||||.. .+.. ....+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 3458999999999999999999998763 33344 5556667788889999999999987 5542 12356
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
++.+|++|+|+|++++.+++.. +.+ +.+ .++|+++|+||+|+.+....+++..... .+++++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECC
Confidence 7889999999999988776543 223 333 2689999999999976544455544322 22468899999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030193 162 SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~ 178 (181)
+|.|+++++++|.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998754
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=1.6e-24 Score=170.38 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=113.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCC----------CCCcccccc-
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG----------QDKIRPLWR- 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~~- 79 (181)
...++|+++|.+|+|||||+++|++.... +..+ |.+.....+...+..+++||||| ++.|...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 45789999999999999999999987632 3333 34444466778889999999999 666666654
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEE
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+++.. .....++...+.. .++|+++|+||+|+.+... .++...........-..+++++
T Consensus 273 ~~~~~ad~~llviD~~~~~--~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGI--IEQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCC--CHHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCc--CHHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 4678899999999997643 3344455555444 4799999999999976432 2333332211111112357999
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+||++|.|++++++.+.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=3.6e-23 Score=158.08 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=115.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCcccceEEEEEECCEEEEEEEcCCCCCccc---------cccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---------~~~~~~ 82 (181)
...++|+++|++|+|||||+++|.+..+. . ...|.+.....+...+..+.+|||||...... ....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 46789999999999999999999988753 2 23355666666677789999999999754321 112344
Q ss_pred ccccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEccc
Q 030193 83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
..+|.+++|+|+++.. ++.....++..+.... .+.|+++|+||+|+......++..... ...+++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5699999999998776 6676666666554422 278999999999987643332222211 123457889999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 030193 161 TSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~~ 179 (181)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 133
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=1.5e-23 Score=159.26 Aligned_cols=133 Identities=26% Similarity=0.441 Sum_probs=105.7
Q ss_pred CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCC
Q 030193 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (181)
||.++....+..+++.+++||++|++.++..|..++++++++|+|+|+++ ..++.....++..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 35666777788889999999999999999999999999999999999998 46799999999998876555
Q ss_pred CCCeEEEEEeCCCCCC-----------------CCCHhHHHhhhC-----CCcc-CCcceEEEEcccCCCCCHHHHHHHH
Q 030193 117 RDAVLLVFANKQDLPN-----------------AMNAAEITDKLG-----LHSL-RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~D~~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
.++|+++++||+|+.. ....++...... +... ...++++++|||+++.|++++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 6899999999999842 122333322211 1111 2356889999999999999999999
Q ss_pred HHHhhh
Q 030193 174 SNNIAT 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+.+
T Consensus 339 ~~~i~~ 344 (353)
T 1cip_A 339 TDVIIK 344 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=7.4e-24 Score=165.91 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=103.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCC---------ccccccccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~ 84 (181)
.+|+++|.+|||||||+|+|++.... ...| |.+.....+.+.+..+++|||||.+. +...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999988743 3333 45566677888899999999999764 23446677899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcce-EEEEcccCCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (181)
+|++++|+|+.+..+. ...++..++.. .++|+++|+||+|+.+.. ..+....+. ..++ +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~--~d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-----~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITK--EDESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-----SLGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCH--HHHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-----GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCH--HHHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-----hcCCCCEEEEeccCC
Confidence 9999999999765433 22344444433 368999999999985320 111101111 1122 4679999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030193 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~ 178 (181)
.|++++++++.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 151 INLDTMLETIIKKLE 165 (439)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999998775
No 135
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.90 E-value=7.4e-23 Score=153.56 Aligned_cols=134 Identities=24% Similarity=0.417 Sum_probs=107.3
Q ss_pred CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC----------CcccHHHHHHHHHHHhcCCCC
Q 030193 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (181)
||+++....+..+++.+++||++|+++++..|.+|+++++++|+|+|++ +..++.....+|..+......
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 4677788888899999999999999999999999999999999999664 567888899999998877666
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHhHHHhh----h-CCCccCCcceEEEEcccCCCCCHHHHHHHH
Q 030193 117 RDAVLLVFANKQDLPNA------------------MNAAEITDK----L-GLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~------------------~~~~~~~~~----~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
.++|+++++||+|+..+ ...++.... + .....+..++.+++|||+++.|++++|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 78999999999998531 122222221 1 122233456788999999999999999999
Q ss_pred HHHhhhc
Q 030193 174 SNNIATK 180 (181)
Q Consensus 174 ~~~l~~~ 180 (181)
.+.+.++
T Consensus 313 ~~~Il~~ 319 (327)
T 3ohm_A 313 KDTILQL 319 (327)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9987654
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=2.7e-24 Score=168.29 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=102.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccccc--C--cccceEEEEEECCEEEEEEEcCCCC--------Cccccccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~ 84 (181)
.++|+++|.+|||||||+|+|++..+.... | |.+..+..+.+.+..+++|||||.+ .+...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 478999999999999999999987754222 2 3344445555667899999999985 566667788899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcce-EEEEcccCCC
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (181)
+|++++|+|+.+..+.. ..++.+.+.+ .++|+++|+||+|+..... + ...+...++ +++++||++|
T Consensus 83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~------~~~~~~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--N------IYDFYSLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------C------CCSSGGGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--h------HHHHHHcCCCCeEEEeCcCC
Confidence 99999999998765543 4566666664 5789999999999865321 0 011111222 5789999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030193 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~i~~~~~~i~~~l~ 178 (181)
.|++++++++.+.+.
T Consensus 150 ~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFK 164 (436)
T ss_dssp BTHHHHHHHHHHTGG
T ss_pred CChHHHHHHHHHhcC
Confidence 999999999998775
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=8.6e-24 Score=160.08 Aligned_cols=156 Identities=24% Similarity=0.303 Sum_probs=113.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECC-EEEEEEEcCCC----CCcccccccccc---ccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQ----DKIRPLWRHYFQ---NTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~~~d~~g~----~~~~~~~~~~~~---~~d 86 (181)
.+|+++|.+|||||||+++|++..+. .. ..|.......+...+ ..+.+||+||. ..+......+++ .++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 47999999999999999999987643 22 235555555666665 79999999994 334444444544 499
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccCCcceEEEEcccC
Q 030193 87 GLIFVVDSND---RDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
++|+|+|+++ +++++....++..+.... ...++|+++|+||+|+.+.. ..+++...+... ++++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~------~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD------YPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC------CCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC------CCEEEEECC
Confidence 9999999988 678877776665554321 13579999999999987532 123333333211 468899999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 030193 162 SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 162 ~~~~i~~~~~~i~~~l~~ 179 (181)
++.|+++++++|.+.+.+
T Consensus 313 tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 313 TREGLRELLFEVANQLEN 330 (342)
T ss_dssp CSSTTHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999998764
No 138
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=7.7e-23 Score=155.89 Aligned_cols=132 Identities=26% Similarity=0.409 Sum_probs=97.1
Q ss_pred cccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCCC
Q 030193 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.++....+..+++.+++||++|++.++..|..++++++++|||+|+++ ..++.....+|..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 3455666777889999999999999999999999999999999999998 678999999999988765556
Q ss_pred CCeEEEEEeCCCCCCC------------------CCHhHHHhhh-----CCCccC-CcceEEEEcccCCCCCHHHHHHHH
Q 030193 118 DAVLLVFANKQDLPNA------------------MNAAEITDKL-----GLHSLR-QRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 118 ~~piivv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~S~~~~~~i~~~~~~i 173 (181)
++|+++++||+|+..+ ...++..... .+.... ..++.+++|||+++.|++++|+++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 8999999999998521 2333333221 111111 346789999999999999999999
Q ss_pred HHHhhh
Q 030193 174 SNNIAT 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+.+
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 139
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=2.7e-23 Score=162.99 Aligned_cols=151 Identities=18% Similarity=0.202 Sum_probs=103.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--ccccC--cccceEEEEEECCEEEEEEEcCCCCCccccc--------cccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 82 (181)
+..++|+++|++|+|||||+|+|++... .+..+ |.+.....+...+..+++|||||...+...+ ..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 4678999999999999999999998754 23334 3344445677789999999999976554332 3357
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.+... ..+.+.+. ..|+++|+||+|+........ ...+. ...+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~--~~i~~~l~-----~~piivV~NK~Dl~~~~~~~~------~~~~~-~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD--QEIYEQVK-----HRPLILVMNKIDLVEKQLITS------LEYPE-NITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH--HHHHHHHT-----TSCEEEEEECTTSSCGGGSTT------CCCCT-TCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH--HHHHHhcc-----CCcEEEEEECCCCCcchhhHH------HHHhc-cCCcEEEEECCC
Confidence 88999999999988765443 33444443 379999999999876432221 11111 245789999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030193 163 GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~~ 179 (181)
|.|+++++++|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
No 140
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=3.2e-24 Score=170.33 Aligned_cols=158 Identities=17% Similarity=0.109 Sum_probs=113.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCccc-ccC--cccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.++|+++|++|+|||||+++|.+..+.. ..+ |.++....+.. .+..+++||||||+.|...+..+++.+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 57899999999999999999999876542 222 33333333433 456899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--C-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--N-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
+|+++....+. .+.+..... .++|+++++||+|+.+.. . ..++.............++++++||++|.|+++
T Consensus 83 VDa~dg~~~qt-~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQT-VESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHH-HHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHH-HHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99987544333 333333332 478999999999987532 1 122222111111112357899999999999999
Q ss_pred HHHHHHHHhh
Q 030193 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~i~~~l~ 178 (181)
+++++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999988653
No 141
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=1.5e-22 Score=151.29 Aligned_cols=153 Identities=19% Similarity=0.107 Sum_probs=109.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCC---------Cccccccccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD---------KIRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~---------~~~~~~~~~~ 82 (181)
+..+|+++|++|+|||||+|++++..+. +..+ |.......+...+..+.+|||||+. .+......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 3458999999999999999999998764 2223 2223334466678999999999987 3445566778
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCccCCcce-EEEEccc
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~S~ 160 (181)
+.+|++++|+|+.+ +.....++.+.+.. .+.|+++++||+|+.. .....+....+.. ..++ .++++||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~----~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLAS----QMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHT----TSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHH----hcCcCceEEEEC
Confidence 99999999999976 33444555555553 4689999999999875 2222222222211 1122 6889999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 030193 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~i~~~~~~i~~~l~ 178 (181)
+++.|++++++.+.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987654
No 142
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.89 E-value=1.6e-22 Score=161.02 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=89.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------------------Cccc-------ccCcccceEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------------------EIVT-------TIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~d~~ 69 (181)
.+..+|+++|++|+|||||+++|+.. .+.+ ...|.......+.+.++.++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 56789999999999999999999621 1111 1224555667788899999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|+.+|...+..+++.+|++|+|+|+++..+.+.. ..|..... .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999876554443 34443333 47899999999999654
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=1.8e-22 Score=156.72 Aligned_cols=159 Identities=17% Similarity=0.097 Sum_probs=102.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc----cccC--cccceEEEEEE---------------C--------CEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIP--TIGFNVETVEY---------------K--------NISFTV 65 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~----~~~~--t~~~~~~~~~~---------------~--------~~~~~~ 65 (181)
...++|+++|+.++|||||+++|.+.... +..+ |.+..+..... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 56789999999999999999999865422 1122 55444333221 1 168999
Q ss_pred EEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHh
Q 030193 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITD 141 (181)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~ 141 (181)
||+|||++|...+...+..+|++++|+|+++........+.+...... ...|+++++||+|+.+... .+++..
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999888888888999999999998542112222222221111 2358999999999976542 233333
Q ss_pred hhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 142 KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 142 ~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
.+.. ....+++++++||++|.|+++++++|.+.+.
T Consensus 163 ~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTT--STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3321 1123568999999999999999999998664
No 144
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-23 Score=146.83 Aligned_cols=125 Identities=27% Similarity=0.393 Sum_probs=95.7
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccc----cCcccceEEEEEECCEEEEEEEcCCCCCccccccccccc----c
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----T 85 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~ 85 (181)
....++|+++|++|||||||+++|.+..+... .++... ++....+.+||+||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 36778999999999999999999999875432 222222 2256789999999999998888888776 8
Q ss_pred cEEEEEEECC-CcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030193 86 QGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 86 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
|++++|+|++ ++.++.....|+...+... ...++|+++|+||+|+.+....+++...+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 8889988888887776432 12479999999999998776666555443
No 145
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.2e-22 Score=159.06 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=106.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCccccc------------c
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW------------R 79 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~------------~ 79 (181)
..++|+++|++|||||||+|++++.... +..+ |.+.....+...+..+.+|||+|..+..... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999998752 3333 3334445677788899999999974332211 2
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccCCcceEEEE
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+.+..+.+. ..+...+.. .+.|+++|+||+|+.+... .+++..............++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 35567999999999987655443 233343332 4789999999999976432 3333222211111122357899
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+||++|.|++++++.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999886643
No 146
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.89 E-value=1.4e-22 Score=163.11 Aligned_cols=156 Identities=21% Similarity=0.173 Sum_probs=108.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccccc-----CcccceEEEEE----------------ECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~~~d~~g~~~ 73 (181)
.+.++|+++|++++|||||+++|++..+.... ++.+....... +....+++||||||+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999876554322 23332222111 1123699999999999
Q ss_pred cccccccccccccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A 136 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--------------~ 136 (181)
|...+..+++.+|++|+|+|+++ +++++... . +.. .++|+++++||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~-l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----I-LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----H-HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----H-HHH---cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99999999999999999999987 44444332 2 222 4789999999999864211 0
Q ss_pred h-----------HHHhhhCCCcc----------CCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 137 A-----------EITDKLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+ ++...+....+ ....++++++||++|.|++++++++...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 1 11111111111 024578999999999999999999987654
No 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=3.1e-23 Score=163.79 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=110.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC----cc----c--ccCcccceEEEEEECCEEEEEEEcCCCCCccccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE----IV----T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~----~~----~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 84 (181)
...++|+++|++++|||||+++|.+.. +. + ...|.+..+..+..++..+++||+||+++|...+..++..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 456899999999999999999999876 21 1 1235566666777788999999999999998888889999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh----hCCC-ccCCcceEEEEcc
Q 030193 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK----LGLH-SLRQRHWYIQSTC 159 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~S 159 (181)
+|++++|+|+++... ....+.+. .+.. .++|+++|+||+|+.+....+++... +... .+ .+++++++|
T Consensus 97 aD~~ilVvda~~g~~-~qt~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~--~~~~ii~vS 169 (482)
T 1wb1_A 97 IDLALIVVDAKEGPK-TQTGEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL--KNSSIIPIS 169 (482)
T ss_dssp CCEEEEEEETTTCSC-HHHHHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG--GGCCEEECC
T ss_pred CCEEEEEEecCCCcc-HHHHHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc--ccceEEEEE
Confidence 999999999986221 11122222 2222 36888999999999864322222221 1111 11 156899999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 030193 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~~i~~~~~~i~~~l~ 178 (181)
|++|.|+++++++|.+.+.
T Consensus 170 A~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 170 AKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhc
Confidence 9999999999999998764
No 148
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.1e-23 Score=165.58 Aligned_cols=152 Identities=23% Similarity=0.285 Sum_probs=105.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccccC----cccceEEEEEECCEEEEEEEcCC--------CCCccccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGG--------QDKIRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g--------~~~~~~~~~~~~ 82 (181)
....+|+++|.+|||||||+|+|++..+....+ |.+.....+.+.+..+++||||| ++.+...+..++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 557899999999999999999999987643222 33344445555678999999999 556777788888
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++|+|+|..+ ++.....++.+.+.+ .++|+++|+||+|+.+... .....+.+ .+ + .++++||++
T Consensus 101 ~~ad~il~VvD~~~--~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~e~~~l-g~---~-~~~~iSA~~ 168 (456)
T 4dcu_A 101 DEADVIIFMVNGRE--GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYDFYSL-GF---G-EPYPISGTH 168 (456)
T ss_dssp HHCSEEEEEEESSS--CSCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG-SS---S-SEEECCTTT
T ss_pred hhCCEEEEEEeCCC--CCChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHHHHHHc-CC---C-ceEEeeccc
Confidence 99999999999864 344556677777765 5799999999999864321 11111100 11 1 246899999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030193 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~i~~~~~~i~~~l~ 178 (181)
|.|++++++.+.+.+.
T Consensus 169 g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CTTHHHHHHHHHTTGG
T ss_pred ccchHHHHHHHHhhcc
Confidence 9999999999988764
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=4.7e-22 Score=159.99 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=106.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC--cc---------ccc-------CcccceEEEEEEC-----CEEEEEEEcCCCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV---------TTI-------PTIGFNVETVEYK-----NISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~---------~~~-------~t~~~~~~~~~~~-----~~~~~~~d~~g~~ 72 (181)
+..+|+++|+.++|||||+++|+... .. +.. .|.......+.+. .+.+++||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999997632 10 110 1222223344443 4899999999999
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccC
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLR 149 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~ 149 (181)
+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+..... .+++...++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~-- 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA-- 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc--
Confidence 99999999999999999999998766665555444333 2 3789999999999976432 223334333321
Q ss_pred CcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.+++++||++|.|++++++++.+.+..
T Consensus 156 ---~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 ---TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp ---TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ---ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 137899999999999999999988764
No 150
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=4.6e-22 Score=145.75 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=104.9
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCc-cc-ccC---cccceEEEEEECCEEEEEEEcCCCCCccccc----------
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI-VT-TIP---TIGFNVETVEYKNISFTVWDVGGQDKIRPLW---------- 78 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~-~~~---t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~---------- 78 (181)
....++|+++|++|+|||||++++++... .. ..+ |.......+...+..+.+|||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999998773 22 222 4445555677788999999999976654322
Q ss_pred -ccccccccEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEe-CCCCCCCCCHhH------------HHhhh
Q 030193 79 -RHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFAN-KQDLPNAMNAAE------------ITDKL 143 (181)
Q Consensus 79 -~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~n-K~D~~~~~~~~~------------~~~~~ 143 (181)
..+++.+|++++|+|+++.... .....++.+..... ...|.++|+| |+|+... ...+ +....
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 2366889999999999863322 12223343433211 1346666666 9999743 2322 22222
Q ss_pred CCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 144 ~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..... .+..+++||+++.|++++++++.+.+..
T Consensus 176 ~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 176 GGRIC---AFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEE---EecCcccccccHHHHHHHHHHHHHHHHh
Confidence 22110 0111689999999999999999998765
No 151
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.88 E-value=1.9e-22 Score=154.38 Aligned_cols=146 Identities=8% Similarity=0.036 Sum_probs=110.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
+|+++|++++|||||+++|+ ....|.+.....++.++..+++|||||+++|.......++.+|++++|+| . ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 99999999999999999999 33456667777777788999999999999998888888899999999999 4 33
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeE-EEEEe-CCCCCCCCCHh----HHHhhhCCCccCCcceEEEE--cccCC---CCCHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVL-LVFAN-KQDLPNAMNAA----EITDKLGLHSLRQRHWYIQS--TCATS---GEGLY 167 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~S~~~---~~~i~ 167 (181)
.+....+++..... .++|. ++++| |+|+ +....+ ++...+... ....+++++ +||++ +.|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 44455555543322 35676 89999 9998 432222 222222211 113578999 99999 99999
Q ss_pred HHHHHHHHHhh
Q 030193 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~i~~~l~ 178 (181)
++++.|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999988764
No 152
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.88 E-value=2.1e-22 Score=151.63 Aligned_cols=132 Identities=27% Similarity=0.369 Sum_probs=104.9
Q ss_pred CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECC----------CcccHHHHHHHHHHHhcCCCC
Q 030193 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (181)
+|.++....+..+++.+++||++|+++++..|.+|+++++++|+|+|++ +..++.....+|..++.....
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 4667778888889999999999999999999999999999999999998 678899999999998887666
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhHH----Hhhh-------CCCccCC-----------cceEEEE
Q 030193 117 RDAVLLVFANKQDLPNA-----------------MNAAEI----TDKL-------GLHSLRQ-----------RHWYIQS 157 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~-----------------~~~~~~----~~~~-------~~~~~~~-----------~~~~~~~ 157 (181)
.++|+++++||+|+..+ ...++. ...+ ....... ..+.+.+
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999998531 112221 1122 1111111 4588999
Q ss_pred cccCCCCCHHHHHHHHHHHhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~ 178 (181)
|||++..|++.+|+.+.+.+.
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 153
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=8.6e-22 Score=158.27 Aligned_cols=154 Identities=21% Similarity=0.254 Sum_probs=109.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--cc---------ccc-------CcccceEEEEEEC-----CEEEEEEEcCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV---------TTI-------PTIGFNVETVEYK-----NISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~---------~~~-------~t~~~~~~~~~~~-----~~~~~~~d~~g~ 71 (181)
++..+|+++|+.++|||||+++|+... +. +.. .|.......+.+. .+.+++||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999997521 10 100 1222222344333 378999999999
Q ss_pred CCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCCc
Q 030193 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLHS 147 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~----~~~~~~~~~ 147 (181)
.+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+.... .++ +...++..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~- 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLD- 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCC-
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhhCCC-
Confidence 999999999999999999999999877666655544433 2 479999999999997643 222 33322221
Q ss_pred cCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
..+++++||++|.|++++++++.+.+..
T Consensus 157 ----~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 ----PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ----GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ----cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 1247899999999999999999988754
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=1.6e-22 Score=157.13 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=109.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc----cccC--cccceEEEEEEC-----------------------CEEEE
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIP--TIGFNVETVEYK-----------------------NISFT 64 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----~~~~--t~~~~~~~~~~~-----------------------~~~~~ 64 (181)
+...++|+++|++++|||||+++|++.... +..+ |.+..+...... ...++
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 355789999999999999999999865422 1122 555444333220 17899
Q ss_pred EEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHH
Q 030193 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEIT 140 (181)
Q Consensus 65 ~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~ 140 (181)
+||+|||++|...+...+..+|++++|+|+++........+.+...... ...|+++|+||+|+.+... .+++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999999888888888999999999998532112222222211110 2358999999999986432 22233
Q ss_pred hhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
..+.. ....+++++++||++|.|+++++++|.+.+.
T Consensus 164 ~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 32221 1123568999999999999999999998664
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.88 E-value=3.8e-23 Score=161.66 Aligned_cols=150 Identities=18% Similarity=0.211 Sum_probs=101.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--Cccc--------------------------------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT--------------------------------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++++|||||+++|++. .+.. ...|.+.....++..+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999864 2210 1235555556677788
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHH-------HHHHHHhcCCCCCC-CeEEEEEeCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-------DELHRMLNEDELRD-AVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-------~~~~~~~~~~~~~~-~piivv~nK~D~~~ 132 (181)
..+++|||||+++|...+..+++.+|++|+|+|+.+ .+|+... +.+.. ... .+ .|+++++||+|+.+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~-~~~---~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIIL-AKT---MGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHH-HHH---TTCTTCEEEEECGGGSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHH-HHH---cCCCeEEEEEEcccCCC
Confidence 999999999999999999999999999999999987 5665332 22221 111 23 46899999999976
Q ss_pred CC----C----HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 133 AM----N----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 133 ~~----~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
.. . .+++...+....+....++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 31 1 1222222221122223478999999999999754
No 156
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.88 E-value=3.3e-23 Score=163.36 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=108.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-cc--CcccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+.++|+++|++++|||||+++|.+..+.. .. -|.......+...+..+++||||||+.|...+..++..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998765432 11 233333344555667899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--cCC--cceEEEEcccCCCCCHH
Q 030193 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQ--RHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~S~~~~~~i~ 167 (181)
+|+++... ....+.+..... .++|+++++||+|+..... +++...+.... ... ..++++++||++|.|++
T Consensus 82 Vda~~g~~-~qT~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVM-PQTIEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSC-TTTHHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCcc-HHHHHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99986321 111122222222 4789999999999975321 11211111110 111 24789999999999999
Q ss_pred HHHHHHHH
Q 030193 168 EGLDWLSN 175 (181)
Q Consensus 168 ~~~~~i~~ 175 (181)
++++++..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99999865
No 157
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=3.4e-22 Score=156.31 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=105.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--c-------------------------c-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--V-------------------------T-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++++|||||+++|++..- . + ...|.+.....++..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 5678999999999999999999965420 0 0 1124555556677788
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCccc---HH---HHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---VV---EARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~ 133 (181)
..+.+||||||++|...+..+++.+|++|+|+|+.+... |. ...+.+..... .++| +++++||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCccc
Confidence 999999999999999999999999999999999986421 11 22222222221 2455 9999999998642
Q ss_pred C----CHhHHHh----hhCCCccCC-cceEEEEcccCCCCCHHHHHH
Q 030193 134 M----NAAEITD----KLGLHSLRQ-RHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 134 ~----~~~~~~~----~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~ 171 (181)
. ..+++.. .+....+.. .+++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 1122222 111111211 257899999999999998654
No 158
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=6.8e-22 Score=150.99 Aligned_cols=156 Identities=18% Similarity=0.117 Sum_probs=105.3
Q ss_pred cce-EEEEcCCCCChHHHHhhhhcCCcc---cccCcccceEEEEEECCEEEEEEEcCCCCC---------cccccccccc
Q 030193 17 EMR-ILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQ 83 (181)
Q Consensus 17 ~~~-i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~ 83 (181)
.++ |+++|++|+|||||+|+|.+..+. ...+|.+.....+.+.+..+.+|||+|..+ |...+. .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 455 999999999999999999988753 224466677777888889999999999622 333333 457
Q ss_pred cccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh--HH----HhhhCCCccCCcceEE
Q 030193 84 NTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA--EI----TDKLGLHSLRQRHWYI 155 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--~~----~~~~~~~~~~~~~~~~ 155 (181)
.+|++++|+|++++. ..... ..+...+......+.|+++|+||+|+.+....+ +. ...+. ..+.++
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~-----~~~~~~ 330 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY-----SPIFDV 330 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC-----SCEEEE
T ss_pred hCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc-----CCCCcE
Confidence 899999999998765 33332 223333333222578999999999987643111 01 12221 123467
Q ss_pred EEcccCCCCCHHHHHHHHHHHhhh
Q 030193 156 QSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 156 ~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++|++++.|++++++.|.+.+..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhcc
Confidence 899999999999999999887653
No 159
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=1.2e-22 Score=154.33 Aligned_cols=121 Identities=18% Similarity=0.342 Sum_probs=91.6
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECC----------CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
+.+.+++|||+|+++++..|..++++++++|+|+|++ +..+|.....||..+.......++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4589999999999999999999999999999999998 778999999999888776555689999999999
Q ss_pred CCCCC----CC-------------------HhHHHhhhCC-----------CccCCcceEEEEcccCCCCCHHHHHHHHH
Q 030193 129 DLPNA----MN-------------------AAEITDKLGL-----------HSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 129 D~~~~----~~-------------------~~~~~~~~~~-----------~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 174 (181)
|+..+ .. .++....... +......+.+++|||+++.|++++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 98431 00 1111111000 00012346778999999999999999999
Q ss_pred HHhhh
Q 030193 175 NNIAT 179 (181)
Q Consensus 175 ~~l~~ 179 (181)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 160
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=5.6e-22 Score=144.32 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=102.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc-----cCcccceEEEEEECCEEEEEEEcCCC--------CCcccccccc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQ--------DKIRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~d~~g~--------~~~~~~~~~~ 81 (181)
...++|+++|.+|+|||||+|++++...... ..|.......+...+..+.+|||||. +.+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 5689999999999999999999999876421 13445556667788999999999996 3333333333
Q ss_pred c----ccccEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CCccCCcc
Q 030193 82 F----QNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG----LHSLRQRH 152 (181)
Q Consensus 82 ~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~ 152 (181)
+ ..+|++|+|+|+++.... ....+++...+.. ...+.|+++++||+|+.+.. .++...... ....+..+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHcC
Confidence 3 889999999999753221 1222333333321 11368999999999997532 222111100 01111122
Q ss_pred --eEEEEcccCC---CCCHHHHHHHHHHHhhh
Q 030193 153 --WYIQSTCATS---GEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 153 --~~~~~~S~~~---~~~i~~~~~~i~~~l~~ 179 (181)
+.+|..++.+ +.|+++|++.+.+.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 2233333332 68999999999888764
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=2.3e-22 Score=156.01 Aligned_cols=159 Identities=20% Similarity=0.170 Sum_probs=112.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--------Cccc------------ccCcccceEEEEEECCEEEEEEEcCCCCCc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--------EIVT------------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 74 (181)
...++|+++|++++|||||+++|++. .+.. ...|.+.....++..+..+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 56789999999999999999999873 1111 112444555566667899999999999999
Q ss_pred ccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCcc
Q 030193 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (181)
...+..++..+|++|+|+|+++... ....+++..... .++| +++++||+|+.+... .+ ++...+....+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 9888888999999999999987543 334444443322 3677 899999999975211 11 12222211112
Q ss_pred CCcceEEEEcccCCCCC------------------HHHHHHHHHHHhh
Q 030193 149 RQRHWYIQSTCATSGEG------------------LYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~~------------------i~~~~~~i~~~l~ 178 (181)
....++++++||++|.| ++++++.+.+.+.
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 22346899999999987 7888888877654
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=1.7e-21 Score=152.38 Aligned_cols=157 Identities=16% Similarity=0.083 Sum_probs=104.7
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcCCc---ccc---------------------------------cCcccce
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEI---VTT---------------------------------IPTIGFN 52 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~---------------------------------~~t~~~~ 52 (181)
+.+......++|+++|++++|||||+++|++... ... .-|.+..
T Consensus 16 l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~ 95 (434)
T 1zun_B 16 LGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVA 95 (434)
T ss_dssp CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCE
T ss_pred HhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEee
Confidence 3333345568999999999999999999976531 000 1133344
Q ss_pred EEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 53 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 53 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..+...+..+++|||||+++|...+..++..+|++|+|+|+++... ....+++.. +... ...|+++|+||+|+.+
T Consensus 96 ~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~-~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 96 YRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYI-ASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHH-HHHT--TCCEEEEEEECTTTTT
T ss_pred eeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHH-HHHc--CCCeEEEEEEcCcCCc
Confidence 45566778999999999999999888888999999999999987542 233333322 2221 1247999999999976
Q ss_pred CCC--HhHHH----hhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 133 AMN--AAEIT----DKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 133 ~~~--~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
... .+++. .......+....++++++||++|.|++++
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 321 11121 11111111123478999999999999873
No 163
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=9.2e-22 Score=155.67 Aligned_cols=152 Identities=19% Similarity=0.150 Sum_probs=103.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc--c-------------------------c-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--V-------------------------T-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (181)
...+||+++|++|+|||||+++|++... . + ...|.+.....++.++
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 5679999999999999999999976510 0 0 1225555666778888
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHH-----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----ARDELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~- 134 (181)
..+.||||||+++|...+..+++.+|++|+|+|+++...+.. ............ ...|+++|+||+|+.+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 999999999999999999999999999999999987543211 112222222221 135799999999997632
Q ss_pred -CHhHHHhhh----CCCccCCcceEEEEcccCCCCCHHH
Q 030193 135 -NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 135 -~~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~~i~~ 168 (181)
..+++.... ....+...+++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 122222211 1112223367899999999999875
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=3.9e-22 Score=154.33 Aligned_cols=157 Identities=18% Similarity=0.108 Sum_probs=109.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------ccc------------ccCcccceEEEEEECCEEEEEEEcCCCCCcccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVT------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~-------~~~------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 77 (181)
.++|+++|++++|||||+++|++.. +.. ...|.+.....++..+..+.+|||||+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5899999999999999999998741 110 112344444456667789999999999999888
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCccCCc
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLRQR 151 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~----~~~~~~~~~~~~~~~ 151 (181)
+..+++.+|++|+|+|+++.... ...+.+.. +.. .++| +++++||+|+.+..+ . +++...+....+...
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~-~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMP-QTREHLLL-ARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCH-HHHHHHHH-HHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCH-HHHHHHHH-HHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88889999999999999874432 33334432 222 3677 789999999975211 1 122222211122223
Q ss_pred ceEEEEcccCCCCC----------HHHHHHHHHHHhh
Q 030193 152 HWYIQSTCATSGEG----------LYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~S~~~~~~----------i~~~~~~i~~~l~ 178 (181)
.++++++||++|.| ++++++.|.+.+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 46899999999765 8999999988664
No 165
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=1.7e-22 Score=149.18 Aligned_cols=157 Identities=15% Similarity=0.249 Sum_probs=91.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cc-------cCcccceEEEEEE----CCEEEEEEEcCCCCCc-------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-------IPTIGFNVETVEY----KNISFTVWDVGGQDKI------- 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~-------~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~------- 74 (181)
...++|+++|.+|+|||||+|++++.... .. .+|.+........ ..+.+++|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 34689999999999999999998876643 22 4566666555443 2369999999997332
Q ss_pred cccc-------ccccc-------------cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 75 RPLW-------RHYFQ-------------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 75 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.... ..++. .+|+++++++.+.. ++......+.+.+.. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 2221 22222 37799999987642 233444555555553 79999999999987543
Q ss_pred CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+........ ...+...+++++++|+++++|+++++++|.+.+
T Consensus 161 e~~~~~~~i-~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQI-MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHH-HHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHH-HHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 333322221 112223456788999999999999999998764
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.9e-22 Score=161.99 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=104.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--c--------------------------------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--T--------------------------------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~--------------------------------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++|+|||||+++|++.... . ...|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45789999999999999999999866321 0 1225555666788888
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
..++||||||+++|...+..+++.+|++|+|+|+++.. ++ ......+ ...... ...|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-~~~~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-HHHHTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-HHHHHc--CCCeEEEEEecccccchh
Confidence 99999999999999999999999999999999997531 10 1111222 222221 235699999999997632
Q ss_pred --CHhHHH----hhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 135 --NAAEIT----DKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 135 --~~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
..+++. ..+....+....++++++||++|.|++++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 112222 11111112223568999999999999865
No 167
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.85 E-value=2.6e-20 Score=148.40 Aligned_cols=115 Identities=22% Similarity=0.198 Sum_probs=85.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c----------------ccc-------cCcccceEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I----------------VTT-------IPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~----------------~~~-------~~t~~~~~~~~~~~~~~~~~~d~~ 69 (181)
.+..+|+++|++|+|||||+++|+... . .+. ..|.......+.+.++.+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 567899999999999999999998631 1 000 012333445677889999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|+.+|...+..+++.+|++|+|+|+++.... .....+ ..... .++|+++|+||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~-~~~~~---~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLM-EVTRL---RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHH-HHHTT---TTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHH-HHHHH---cCCCEEEEEcCcCCcccc
Confidence 9999998888899999999999999865322 222333 33333 478999999999997643
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=4e-22 Score=157.02 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=91.0
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcC--Ccc--------------------------------cccCcccceEEEEEE
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEY 58 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~ 58 (181)
.....++|+++|++++|||||+++|+.. .+. ....|.+.....+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 3456789999999999999999999742 110 012355555556777
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cHH---HHHHHHHHHhcCCCCCCCe-EEEEEeCCCCC
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDAV-LLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~ 131 (181)
.+..+++||||||++|...+..++..+|++|+|+|+.+.. +|+ ...+.+..... .++| +++++||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence 8899999999999999999999999999999999998642 221 12222222211 3576 99999999996
Q ss_pred CCC-C---Hh----HHHhhhCCC-ccC-CcceEEEEcccCCCCCHHHHH
Q 030193 132 NAM-N---AA----EITDKLGLH-SLR-QRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 132 ~~~-~---~~----~~~~~~~~~-~~~-~~~~~~~~~S~~~~~~i~~~~ 170 (181)
... . .+ ++...+... .+. ..+++++++||++|.|+++++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 421 1 11 122211111 111 125789999999999998754
No 169
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=8.3e-22 Score=142.71 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=98.9
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCccc-cc----CcccceEEEEEECCEEEEEEEcCCCC-----------Cccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TI----PTIGFNVETVEYKNISFTVWDVGGQD-----------KIRP 76 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~----~t~~~~~~~~~~~~~~~~~~d~~g~~-----------~~~~ 76 (181)
+....++|+++|++|+|||||+|++++..+.. .. .|.......+...+..+.+|||||.. .+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34677999999999999999999999987642 22 24445556677888999999999943 2334
Q ss_pred ccccccccccEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCccCCcc
Q 030193 77 LWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQRH 152 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~ 152 (181)
.+..+++.+|++|+|+|+++.... .....++...+... ...|+++|+||+|+......++...... ....+..+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 455556788999999999754331 11222333322211 2369999999999876433221111000 00011112
Q ss_pred eEEEEcccC-----CCCCHHHHHHHHHHHhhh
Q 030193 153 WYIQSTCAT-----SGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 153 ~~~~~~S~~-----~~~~i~~~~~~i~~~l~~ 179 (181)
..++.++.. ++.++.++++.+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 234445444 347899999998887653
No 170
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.85 E-value=6.1e-23 Score=165.52 Aligned_cols=158 Identities=19% Similarity=0.165 Sum_probs=89.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc---------------------------cc-------ccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI---------------------------VT-------TIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------------------~~-------~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++++|||||+++|++..- .+ ..-|.+.....+...+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 4567999999999999999999964210 00 0114444455566677
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~ 133 (181)
..+.|||||||++|...+..++..+|++|+|+|+++.. ++ ......+.. +.. .++| +++|+||+|+.+.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~-~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYL-LRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHH-HHH---SSCCCEEEEEECGGGGTT
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHH-HHH---cCCCeEEEEEeccccccc
Confidence 89999999999999999999999999999999997531 11 111122222 221 2455 9999999999752
Q ss_pred C--CH----hHHHhhh-CCCccCCcceEEEEcccCCCCCHH--------------HHHHHHHHH
Q 030193 134 M--NA----AEITDKL-GLHSLRQRHWYIQSTCATSGEGLY--------------EGLDWLSNN 176 (181)
Q Consensus 134 ~--~~----~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~--------------~~~~~i~~~ 176 (181)
. .. .++...+ ....+...+++++++||++|.|+. .|++.|...
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 2 11 2233333 223333446789999999999998 688777654
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.84 E-value=8.7e-21 Score=141.41 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=100.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-------cccCc----------------------ccce-------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------IGFN------------- 52 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------~~~~t----------------------~~~~------------- 52 (181)
...++|+++|.+|+|||||+|+|++..+. +..|+ +...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 46779999999999999999999998753 11232 1000
Q ss_pred ------------EEEEEEC-CEEEEEEEcCCCC-------------CcccccccccccccEEE-EEEECCCcccHHHHHH
Q 030193 53 ------------VETVEYK-NISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD 105 (181)
Q Consensus 53 ------------~~~~~~~-~~~~~~~d~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 105 (181)
...+... ...+++|||||.. .+...+..+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0111122 3789999999953 23445667778887666 7999976433222222
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 ~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
+.+.+.. .+.|+++|+||+|+.+... ..+..... .........+++++||++|.|++++++++.+
T Consensus 184 -~~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 -IAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp -HHHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred -HHHHhCC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 3344433 4789999999999976433 22222210 1111111247899999999999999998876
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=3.9e-21 Score=151.06 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=103.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC--Ccc--------------------------------cccCcccceEEEEEECC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (181)
...++|+++|++++|||||+++|++. .+. ....|.+.....++..+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35689999999999999999999864 111 01236666667788888
Q ss_pred EEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc---cHH---HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCC
Q 030193 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDA-VLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~~ 133 (181)
..+.+||||||++|...+..++..+|++|+|+|+.+.. +|+ ...+.+... .. .++ ++++|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 99999999999999999999999999999999997532 121 223333222 21 245 49999999999742
Q ss_pred --CCHhH----HHhhhCCCccCCcceEEEEcccCCCCCHHHH
Q 030193 134 --MNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 134 --~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 169 (181)
...++ +...+....+...+++++++||++|.|+.++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11112 2211111112222468999999999998743
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.84 E-value=6.2e-20 Score=150.45 Aligned_cols=114 Identities=23% Similarity=0.161 Sum_probs=87.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--c------------c-------cccCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~------------~-------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
.+..+|+++|++|+|||||+++|+... + . ....|.......+.+.++.+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 567899999999999999999998311 1 0 112355555667788899999999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|...+..+++.+|++|+|+|+++..+++... .|..... .++|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHHHHH----cCCCEEEEEECCCcccC
Confidence 9999999999999999999998876665543 3333333 37999999999998754
No 174
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=7.3e-22 Score=150.90 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=85.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-c-c--------cCcccceEEEE--EECC--EEEEEEEcCCC-------CC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T-T--------IPTIGFNVETV--EYKN--ISFTVWDVGGQ-------DK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~-~--------~~t~~~~~~~~--~~~~--~~~~~~d~~g~-------~~ 73 (181)
...++|+++|++|+|||||+++|.+.... . . .+|.+.....+ ...+ ..+++|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998765432 1 1 13444333332 2223 47999999998 66
Q ss_pred cccccc-------cccccc-------------cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 74 IRPLWR-------HYFQNT-------------QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+...+. .+++.+ |+++|+++.+ ..++......+...+. .++|+++|+||+|+.+.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 666655 555443 3466666542 4456666655555553 47999999999998764
Q ss_pred CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.+....... ....+...+++++++|++++.| ++.+..+.+.+.+
T Consensus 190 ~ev~~~k~~-i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 190 KERERLKKR-ILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHH-HHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 332221111 1222344567899999999998 7777777776643
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=4.1e-20 Score=135.57 Aligned_cols=117 Identities=12% Similarity=0.135 Sum_probs=84.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccC--cccceEEEEEECCEEEEEEEcCCCCCcccccccccc-------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ------- 83 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~------- 83 (181)
.+.++|+++|++|+|||||+|+|++.... ...+ |.......+...+..+++|||||++++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 36799999999999999999999998753 2222 444555667788999999999999887666554443
Q ss_pred --cccEEEEEEECCCcccHHHHHHHHHHHhcCCCCC--CCeEEEEEeCCCCCC
Q 030193 84 --NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPN 132 (181)
Q Consensus 84 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~ 132 (181)
.+|++++|++++... +......+.+.+...... ..|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999987543 444433333333321112 249999999999863
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=2e-20 Score=157.74 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=108.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC-------cc-----c-------ccCcccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------IV-----T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~-------~~-----~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
...++|+++|++++|||||+++|++.. +. + ...|.+.....++..+..+++||||||++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999998641 00 0 0113333334566677899999999999999
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCccC
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~----~~~~~~~~~~~~~ 149 (181)
..+..++..+|++|+|+|+++... ....+++... .. .++| +++++||+|+.+..+ . +++...+....+.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll-~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLG-RQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHH-HH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHH-HH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 888889999999999999986432 2233344322 22 3577 899999999975221 1 1222222111222
Q ss_pred CcceEEEEcccCCC--------CCHHHHHHHHHHHhh
Q 030193 150 QRHWYIQSTCATSG--------EGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~S~~~~--------~~i~~~~~~i~~~l~ 178 (181)
...++++++||++| .|++++++.|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 33578999999999 568999999887654
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=4.3e-19 Score=145.00 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=84.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--------------cc-------cCcccceEEEEEECCEEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~-------~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 73 (181)
.+..+|+++|+.|+|||||+++|++.... +. ..+.......+....+.+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 56789999999999999999999843211 00 1133344456677889999999999999
Q ss_pred cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|...+..+++.+|++++|+|+.+.... ....+|..... .++|+++|+||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~-qt~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccch-hHHHHHHHHHH----ccCCEEEEecCCchh
Confidence 999899999999999999998764332 22344444333 378999999999987
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.81 E-value=9.6e-19 Score=143.49 Aligned_cols=115 Identities=20% Similarity=0.165 Sum_probs=87.4
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhc--CCcc------------c-------ccCcccceEEEEEECCEEEEEEEcCCCC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKL--GEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~--~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 72 (181)
..+..+|+++|++|+|||||+++|+. ..+. + ...|.......+.+.++.+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 35678999999999999999999984 2110 1 1124444456677889999999999999
Q ss_pred CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+|...+..+++.+|++|+|+|+.+..+.+.. ..|..... .++|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHHHHH----cCCCEEEEEECCCcccc
Confidence 9999999999999999999999876665444 33433333 37899999999999764
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.81 E-value=1.1e-19 Score=136.36 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=98.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc-cc------ccC----cccc--------------------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VT------TIP----TIGF-------------------------------- 51 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~------~~~----t~~~-------------------------------- 51 (181)
...++|+|+|++|+|||||+|+|++..+ +. ..| +...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4567999999999999999999999875 11 111 0000
Q ss_pred -----------------eEEEE--EE-CCEEEEEEEcCCCCC-------------cccccccccccccEEEEEEECCCcc
Q 030193 52 -----------------NVETV--EY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 52 -----------------~~~~~--~~-~~~~~~~~d~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
....+ .. .+..+.+|||||... +...+..++..+|++++|+|+++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00001 11 346799999999753 4455667788999999999985332
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCC---CCCHHHHHHHHH
Q 030193 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS---GEGLYEGLDWLS 174 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i~~~~~~i~ 174 (181)
........+...+.. .+.|+++|+||+|+.+... ..+..... .......-++++.+|+.+ +.|++++++.+.
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 111111233344443 4789999999999976543 22222210 111111123455566666 899999999988
Q ss_pred HHhh
Q 030193 175 NNIA 178 (181)
Q Consensus 175 ~~l~ 178 (181)
+.+.
T Consensus 258 ~~~~ 261 (315)
T 1jwy_B 258 LYFK 261 (315)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=2.3e-19 Score=127.06 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=97.2
Q ss_pred hccccceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccceE--EEEEECCEEEEEEEcCCCCC----------cccccc
Q 030193 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLWR 79 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~----------~~~~~~ 79 (181)
+.....+|+++|++|||||||++++.+..+. ...|+.+... ..+...+ .+.+||+||... ++....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3467789999999999999999999988732 2233333221 2233333 688999999743 222222
Q ss_pred ccc---ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccCCcc
Q 030193 80 HYF---QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRH 152 (181)
Q Consensus 80 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~ 152 (181)
.++ ..++++++++|+....+... ..+...+.. .+.|+++++||+|+.+... .+..+...... ...
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~---~~~ 172 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF---NGD 172 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG---CSC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc---CCC
Confidence 333 46899999999987655432 112222222 4689999999999865321 11222222111 124
Q ss_pred eEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 153 WYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 153 ~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+.++++|++++.|++++++.|.+.+.
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHh
Confidence 57889999999999999999988754
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.80 E-value=2.1e-18 Score=141.58 Aligned_cols=114 Identities=16% Similarity=0.039 Sum_probs=85.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--cc------------cc-------cCcccceEEEEEECC-------EEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV------------TT-------IPTIGFNVETVEYKN-------ISFTVW 66 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~------------~~-------~~t~~~~~~~~~~~~-------~~~~~~ 66 (181)
++..+|+|+|+.|+|||||+++|+... +. +. ..|.......+.+.+ +.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 567899999999999999999997431 10 11 113333344555555 899999
Q ss_pred EcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
||||+.+|...+..+++.+|++|+|+|+++....+. ...|..... .++|+++|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQS-ETVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 999999999999999999999999999987654333 334433322 47899999999998653
No 182
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.79 E-value=1.1e-19 Score=139.62 Aligned_cols=132 Identities=27% Similarity=0.385 Sum_probs=102.9
Q ss_pred cccceEEEEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCCC
Q 030193 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|+++....+..+++.+++|||+|+++++..|..++++++++|+|+|+++ ..+|.....|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5667777788889999999999999999999999999999999999998 889999999999988765557
Q ss_pred CCeEEEEEeCCCCCCC-----C-C-------------------------HhHHHhhhC----CCc-----cCCcceEEEE
Q 030193 118 DAVLLVFANKQDLPNA-----M-N-------------------------AAEITDKLG----LHS-----LRQRHWYIQS 157 (181)
Q Consensus 118 ~~piivv~nK~D~~~~-----~-~-------------------------~~~~~~~~~----~~~-----~~~~~~~~~~ 157 (181)
++|++||+||+|+... . . ..+....+. ... -....+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 8999999999998421 0 0 001111110 000 0113577889
Q ss_pred cccCCCCCHHHHHHHHHHHhhh
Q 030193 158 TCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 158 ~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
|||+++.||+++|.++.+.+..
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=3.8e-19 Score=145.87 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=105.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc--cccCcccce-E---------EE---------------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN-V---------ET--------------------------- 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~-~---------~~--------------------------- 55 (181)
...++|+|+|++|+|||||+|+|++..+. +..|++... . +.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 57899999999999999999999988743 334433110 0 00
Q ss_pred ------------------EEECC----EEEEEEEcCCCCC---cccccccccccccEEEEEEECCCcccHHHHHHHHHHH
Q 030193 56 ------------------VEYKN----ISFTVWDVGGQDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110 (181)
Q Consensus 56 ------------------~~~~~----~~~~~~d~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 110 (181)
+.... ..+.+|||||... ....+..+++.+|++|+|+|++++.+...... |...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHH
Confidence 01110 3589999999543 34456677889999999999987766554433 3334
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCCC-----CHhH-------HHhhh---CCCccC-----CcceEEEEcccC---------
Q 030193 111 LNEDELRDAVLLVFANKQDLPNAM-----NAAE-------ITDKL---GLHSLR-----QRHWYIQSTCAT--------- 161 (181)
Q Consensus 111 ~~~~~~~~~piivv~nK~D~~~~~-----~~~~-------~~~~~---~~~~~~-----~~~~~~~~~S~~--------- 161 (181)
+.. .+.|+++|+||+|+.... ..++ +.... ...... ....+++++||+
T Consensus 226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 433 367899999999986432 1111 21110 001111 123468899999
Q ss_pred -----CCCCHHHHHHHHHHHhh
Q 030193 162 -----SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 -----~~~~i~~~~~~i~~~l~ 178 (181)
++.|++++++.+.+.+.
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988664
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=9.1e-19 Score=128.94 Aligned_cols=118 Identities=11% Similarity=0.111 Sum_probs=81.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc--ccC--cccceEEEEEECCEEEEEEEcCCCCCcccccc-------c--c
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR-------H--Y 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-------~--~ 81 (181)
...++|+++|.+|+|||||+|+|++..+.. ..+ |.......+...+..+.+|||||..++..... . .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 357899999999999999999999887532 222 33344455677889999999999876653322 1 1
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC--CeEEEEEeCCCCCCC
Q 030193 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD--AVLLVFANKQDLPNA 133 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~ 133 (181)
...+|+++||+|++.. ++......|...+......+ .|+++|+||+|+...
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2469999999998653 34444333333333211122 699999999998753
No 185
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.78 E-value=5.8e-18 Score=135.45 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=86.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------------------CcccccC-------cccceEEEEEECCEEEEEEEcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------------------EIVTTIP-------TIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------------------~~~~~~~-------t~~~~~~~~~~~~~~~~~~d~~ 69 (181)
.+..||+|+|+.++|||||..+|+.. .+.+..+ |+......+.++++.++|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 45789999999999999999999521 1112111 4445567789999999999999
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
||.+|.....+.++-+|++|+|+|+.+--. .+....|..... .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~-~qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVE-AQTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSC-HHHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcc-cccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 999999999999999999999999975432 333445554444 48999999999997643
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=5.1e-19 Score=135.28 Aligned_cols=150 Identities=16% Similarity=0.179 Sum_probs=95.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc-cc-c-Ccccc-----------------------------------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT-I-PTIGF----------------------------------------- 51 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~-~-~t~~~----------------------------------------- 51 (181)
.-..|+|+|++|||||||+|+|++..+. .. . .|...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4559999999999999999999997652 11 0 01000
Q ss_pred -----------e--EEEEEE-CCEEEEEEEcCCCCCc-------------ccccccccccccEEEEEEECCCcccHHHHH
Q 030193 52 -----------N--VETVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR 104 (181)
Q Consensus 52 -----------~--~~~~~~-~~~~~~~~d~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 104 (181)
. ...+.. ....+++|||||..++ ......|++.+|++|+|+|+++........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0 011111 2357899999997766 555677889999999999986544332222
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHH
Q 030193 105 DELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 105 ~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 172 (181)
..+...+.. .+.|+++|+||+|+.+... ..+..... ....+.+|+++|++++.++++.+..
T Consensus 193 ~~l~~~~~~---~~~~~i~V~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 193 IKISREVDP---SGDRTFGVLTKIDLMDKGTDAVEILEGR----SFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHSCT---TCTTEEEEEECGGGCCTTCCSHHHHTTS----SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHhcc---cCCCEEEEEeCCccCCCcccHHHHHcCc----cccccCCeEEEEECChHHhccCCCH
Confidence 223333332 4689999999999976432 22222211 2233456888999998887765444
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=6.1e-18 Score=130.88 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=104.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECC-EEEEEEEcCCCCCc----cccccc---cccccc
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPLWRH---YFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~----~~~~~~---~~~~~d 86 (181)
..|+++|++|||||||++++.+.... .. ..|.......+...+ ..+.+||+||.... ...... ....++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 46899999999999999999987532 11 223344444555554 78999999997432 112222 235699
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCC
Q 030193 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 165 (181)
.++.++|++ ...+.....++.+..... .....|.++|+||+|+......+++...+ +..+++++.+||+++.|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccC
Confidence 999999997 555555554443332210 01257899999999987642222333322 22345789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030193 166 LYEGLDWLSNNIAT 179 (181)
Q Consensus 166 i~~~~~~i~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 312 i~eL~~~i~~~l~~ 325 (416)
T 1udx_A 312 LPALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 188
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=118.67 Aligned_cols=173 Identities=21% Similarity=0.331 Sum_probs=116.0
Q ss_pred HHHHHhhhccccceEEEEcCC-CCChHHHHhhhhcCCcc--------cccCcccceE-------EEEEE-----------
Q 030193 6 TKLFSKLFAKKEMRILMVGLD-AAGKTTILYKLKLGEIV--------TTIPTIGFNV-------ETVEY----------- 58 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~-~~GKSsli~~l~~~~~~--------~~~~t~~~~~-------~~~~~----------- 58 (181)
++++.+......++++++||. -.=..+|+.++....-. ......+-.+ ..++.
T Consensus 5 ~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er 84 (227)
T 3l82_B 5 TSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKER 84 (227)
T ss_dssp CCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-----
T ss_pred HHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHh
Confidence 345667777889999999983 34556899988775411 1111111100 01111
Q ss_pred -----CC----EEEEEEE------cCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHH---HHHhcCCC-CCCC
Q 030193 59 -----KN----ISFTVWD------VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDE-LRDA 119 (181)
Q Consensus 59 -----~~----~~~~~~d------~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~ 119 (181)
++ -++-... .+|++..+..|.+|+.++|++|||+|.++.+.++ ..+.+ ..++.... ..+.
T Consensus 85 ~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~ga 163 (227)
T 3l82_B 85 DRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGR 163 (227)
T ss_dssp --------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCS
T ss_pred hhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCC
Confidence 00 1112223 3378899999999999999999999999876554 44444 44454432 3689
Q ss_pred eEEEEEeCC-CCCCCCCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 120 VLLVFANKQ-DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 120 piivv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
|++|++||. |+.......++...+.+..+ .+.|.+..|||++|+|+.+.++||.+.+.+|
T Consensus 164 pLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 164 PLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp CEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred eEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 999999995 78888899999999998877 4799999999999999999999999988765
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.75 E-value=1.4e-18 Score=132.57 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=95.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-------cccCc----------------------ccce-------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------IGFN------------- 52 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------~~~~t----------------------~~~~------------- 52 (181)
...++|+|+|.+|+|||||+|+|++..+. +..|+ +...
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998753 11222 1000
Q ss_pred ------------EEEEEEC-CEEEEEEEcCCCC-------------Cccccccccccccc-EEEEEEECCCcccHHHHHH
Q 030193 53 ------------VETVEYK-NISFTVWDVGGQD-------------KIRPLWRHYFQNTQ-GLIFVVDSNDRDRVVEARD 105 (181)
Q Consensus 53 ------------~~~~~~~-~~~~~~~d~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 105 (181)
...+... ...++||||||.. .+......|+..++ ++++|+|++.. +.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchhHH
Confidence 0111222 4689999999953 23345556666555 55556666532 222211
Q ss_pred -HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCccCCcc-eEEEEcccCCCCCHHHHHHHHHH
Q 030193 106 -ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 -~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.+.+.+.. .+.|+++|+||+|+.+... ..++... .......+ .+++++||+++.|++++++++.+
T Consensus 187 ~~i~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~--~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN--KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCT---TCTTEEEEEECGGGSCTTCCCHHHHTT--CSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCc---CCCceEEEeccccccCcchhHHHHHhC--CcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 13333332 4789999999999976433 2222221 11111123 46889999999999999998876
No 190
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=6.8e-19 Score=131.42 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=79.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC-Ccccc---------cCcccceEEEEE----ECCEEEEEEEcCCC-------CC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG-EIVTT---------IPTIGFNVETVE----YKNISFTVWDVGGQ-------DK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~---------~~t~~~~~~~~~----~~~~~~~~~d~~g~-------~~ 73 (181)
.-.++|+++|++|+|||||++++.+. .++.. .++.......+. .....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 33321 122222222222 22468999999997 55
Q ss_pred cccccc-------ccccc-------------ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030193 74 IRPLWR-------HYFQN-------------TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..... .+++. ++.++|+.+++. .++......+.+.+. .+.|+++|+||.|+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCCCH
Confidence 554443 34332 234666666532 123333323333333 36799999999998753
Q ss_pred CCHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.+...... .....++..+++++++||+++ |++++|..+.+.+.+
T Consensus 171 ~e~~~~~~-~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKK-RILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHH-HHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHH-HHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 22211111 111122333567899999999 999999999887754
No 191
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=8e-18 Score=129.83 Aligned_cols=80 Identities=30% Similarity=0.350 Sum_probs=47.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEE--E-------------------EC---CEEEEEEEcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETV--E-------------------YK---NISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~--~-------------------~~---~~~~~~~d~~g 70 (181)
++|+++|.+|+|||||+|+|++.... +..| |.+...... . .. ...+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987732 2222 332222211 1 11 36899999999
Q ss_pred CCC----cccc---cccccccccEEEEEEECCCc
Q 030193 71 QDK----IRPL---WRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 71 ~~~----~~~~---~~~~~~~~d~~i~v~d~~~~ 97 (181)
... .+.. ...+++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 2222 22456899999999999764
No 192
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.71 E-value=6.1e-18 Score=141.27 Aligned_cols=112 Identities=19% Similarity=0.134 Sum_probs=85.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC------------cccc-------cCcccceEEEEEEC----------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTT-------IPTIGFNVETVEYK---------------- 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~-------~~t~~~~~~~~~~~---------------- 59 (181)
.+..||+|+|++|+|||||+++|+... +.+. ..|.......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 567899999999999999999998641 1111 11333333444443
Q ss_pred CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
++.++||||||+.+|...+..+++.+|++|+|+|+.+..+++.... |..... .++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHH----cCCCeEEEEECCCcc
Confidence 6899999999999999999999999999999999998777765443 333333 478999999999986
No 193
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=2e-17 Score=123.52 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=98.9
Q ss_pred HHHhhhhcCCcc--cccCcccceEEEEEE-CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcc-cHHHHHHHH
Q 030193 32 TILYKLKLGEIV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDEL 107 (181)
Q Consensus 32 sli~~l~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~ 107 (181)
+|+.+++.+.|. .+.||.+..+. +.. .+..+++||+ +++|+.++..+++++|++|+|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888875 45688884443 332 1237999999 9999999999999999999999999887 677777776
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 108 HRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 108 ~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
..... .++|+++|+||+|+.+... .+++...+.. . +++++|||++|.|+++++..+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 65432 4799999999999975432 2223333221 1 47899999999999999988754
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.70 E-value=1.3e-17 Score=133.48 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=82.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc----cccCcccceEEEEE---------------------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVE--------------------------------- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~----~~~~t~~~~~~~~~--------------------------------- 57 (181)
...++|+|+|.+|+|||||+|+|++..+. +..|++........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998752 33333321110000
Q ss_pred -----ECC---EEEEEEEcCCCCC-----------cccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC
Q 030193 58 -----YKN---ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (181)
Q Consensus 58 -----~~~---~~~~~~d~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (181)
... ..+.+|||||... +...+..++..+|++++|+|+++.........++ +.+.. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l-~~l~~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAI-GALRG---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHH-HHTTT---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHH-HHHHh---cC
Confidence 000 3589999999764 4455566778899999999998754444444444 33443 36
Q ss_pred CeEEEEEeCCCCCCCCCHhHHH
Q 030193 119 AVLLVFANKQDLPNAMNAAEIT 140 (181)
Q Consensus 119 ~piivv~nK~D~~~~~~~~~~~ 140 (181)
.|+++|+||+|+.+.....++.
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~~ 240 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRVY 240 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHHH
Confidence 8999999999998654444443
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=128.33 Aligned_cols=157 Identities=13% Similarity=0.207 Sum_probs=75.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc---------cCcccceEEEE--E--ECCEEEEEEEcCCCCCccc-----
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IPTIGFNVETV--E--YKNISFTVWDVGGQDKIRP----- 76 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~t~~~~~~~~--~--~~~~~~~~~d~~g~~~~~~----- 76 (181)
.-.++|+++|++|+|||||+++|++..+... .++.......+ . .....+++||++|...+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 3456899999999999999999998775311 12222221111 1 1235789999999765321
Q ss_pred --------------------ccccccccccE--EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 77 --------------------LWRHYFQNTQG--LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 77 --------------------~~~~~~~~~d~--~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
....++.++++ ++|+++++ ..++......|...+. .++|+|+|+||+|+....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt-~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS-GHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC--CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc-ccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 11234455554 44444442 1345555444444454 379999999999987543
Q ss_pred CHhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+........ ...+...+++++++|++++.++++++..+.+.+
T Consensus 184 ev~~~k~~i-~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQI-MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHH-HHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHH-HHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 222211111 112223356788999999999999888777653
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=7.6e-17 Score=115.02 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=93.1
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-------cccCcc----------cceEEEEE------------------E
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI----------GFNVETVE------------------Y 58 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------~~~~t~----------~~~~~~~~------------------~ 58 (181)
..+..+|+++|.+|+|||||+++|++.... ...+.. +.....++ .
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 356789999999999999999999864210 111110 11111111 1
Q ss_pred CCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCH
Q 030193 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNA 136 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~ 136 (181)
.+..+.+|||+|+..... .+....+.+++|+|+.+.... ... +... .+.|+++|+||+|+.+. ...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTCCH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhhHH
Confidence 346788999999521111 111356889999998754321 111 1111 24788999999998643 244
Q ss_pred hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
+++...+.. . ...++++++|+++|.|++++++++.+.+..
T Consensus 175 ~~~~~~~~~--~-~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 175 EKMKADAKL--I-NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH--H-CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHH--h-CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444333211 1 124578999999999999999999987653
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.69 E-value=3.6e-17 Score=124.76 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=94.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCcccc-------------------eEE-------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIGF-------------------NVE------------- 54 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~--~~~~~t~~~-------------------~~~------------- 54 (181)
.+...|+++|.+|+|||||+++|... .. .+..|+... ...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 45678999999999999999999632 11 011111000 000
Q ss_pred ---------EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 55 ---------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 55 ---------~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
.++..++.+.|+||||... ........+|++++|+|+...+.++... ....+.|+++|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVl 224 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVV 224 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEE
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEE
Confidence 0122568899999999432 2223447899999999987544331111 111346999999
Q ss_pred eCCCCCCCCCHh----HHHhhhCCC--ccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 126 NKQDLPNAMNAA----EITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 126 nK~D~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
||+|+....... ++...+... ....++.+++++||++|.|+++++++|.+.+.
T Consensus 225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 999986532222 222221100 01122457999999999999999999988764
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=120.95 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=87.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC------c--ccccCccc--------------------ceEE--------------
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE------I--VTTIPTIG--------------------FNVE-------------- 54 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~------~--~~~~~t~~--------------------~~~~-------------- 54 (181)
...|+++|++|||||||+|++.+.. . ....|+.. ..+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 6889999999999999999998621 0 01111100 0000
Q ss_pred -------EEEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030193 55 -------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 55 -------~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
.++..+..+.++||+|-... .......+|++++|+|+......+.... .+ ...|.++|+||
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK 221 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTK 221 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECC
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEee
Confidence 00125678899999995321 2334578999999999975432211111 11 24588999999
Q ss_pred CCCCCCCCH----hHHHhhhCCCcc--CCcceEEEEcccCCCCCHHHHHHHHHHHh
Q 030193 128 QDLPNAMNA----AEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 128 ~D~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+|+.+.... .++...+..... .....+++.+|+++|.|+++++++|.+.+
T Consensus 222 ~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 222 SDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 998643211 122222221100 11234788999999999999999998865
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.67 E-value=3.3e-17 Score=133.37 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=111.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC--------C------cccccC-------cccceEEEEEECCEEEEEEEcCCCCCcc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG--------E------IVTTIP-------TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~--------~------~~~~~~-------t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 75 (181)
..||+|+|+.++|||||..+|+.. . +.+..+ |+......+.++++.++|+|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 468999999999999999999631 0 111111 3444455678899999999999999999
Q ss_pred cccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCc-----
Q 030193 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS----- 147 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~----- 147 (181)
....+.++-+|++++|+|+.+--. .+....|..... .++|.++++||+|.....- .+++...+....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~-~qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQ-AQTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTC-SHHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 999999999999999999975321 123344544443 3789999999999764321 222322222110
Q ss_pred ---------------------------------------------------cCCcceEEEEcccCCCCCHHHHHHHHHHH
Q 030193 148 ---------------------------------------------------LRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 148 ---------------------------------------------------~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 176 (181)
....-.|++..||+++.|++.+++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 00112577889999999999999999987
Q ss_pred hhh
Q 030193 177 IAT 179 (181)
Q Consensus 177 l~~ 179 (181)
+..
T Consensus 237 ~p~ 239 (638)
T 3j25_A 237 FYS 239 (638)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 200
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.63 E-value=7.3e-15 Score=121.01 Aligned_cols=113 Identities=18% Similarity=0.116 Sum_probs=81.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC--------------cccccC-------cccceEEEEEEC-------CEEEEEE
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTTIP-------TIGFNVETVEYK-------NISFTVW 66 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~--------------~~~~~~-------t~~~~~~~~~~~-------~~~~~~~ 66 (181)
++..||+|+|+.++|||||+.+|+... +.+..+ |+......+.++ ++.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 566799999999999999999996311 111111 222333444443 6899999
Q ss_pred EcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030193 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
|||||.+|.....+.++-+|++|+|+|+.+--. .+....|..... .++|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-~qT~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-PQSETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEccccccC
Confidence 999999999999999999999999999975322 233344555444 3799999999999754
No 201
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-14 Score=111.24 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=74.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCcccceEEEEEECCEEEEEEEcCCCCCcc-------ccccccccccc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~d 86 (181)
..+|+++|.||+|||||+|+|++.... .. ..|.+.....+.+.+.+++++|+||-.... ...-...+.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 348999999999999999999987643 33 347777777888999999999999942211 11223457899
Q ss_pred EEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030193 87 GLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 87 ~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
++++|+|++++..- +.+...+...- ....+.|.++++||.|.
T Consensus 152 ~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 152 LLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSS
T ss_pred ccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhh
Confidence 99999999876322 22222222211 11124566666777764
No 202
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=113.53 Aligned_cols=111 Identities=23% Similarity=0.382 Sum_probs=89.0
Q ss_pred cCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHH---HHhcCCC-CCCCeEEEEEeC-CCCCCCCCHhHHHhh
Q 030193 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH---RMLNEDE-LRDAVLLVFANK-QDLPNAMNAAEITDK 142 (181)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~piivv~nK-~D~~~~~~~~~~~~~ 142 (181)
.+|++..+..|..|+.++|++|||+|.++.+.++ ..+.+. .++.+.. ..+.|++|++|| .|+.......++...
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578899999999999999999999999887654 333222 3443221 257999999997 589888899999999
Q ss_pred hCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhhc
Q 030193 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~~ 180 (181)
+++..+. +.|.+..|||.+|+|+.+.++|+.+.+.+|
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 9988774 799999999999999999999999988765
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.62 E-value=8e-16 Score=116.71 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=91.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCcc---------------------cceEEE----------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTI---------------------GFNVET---------- 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~--~~~~~t~---------------------~~~~~~---------- 55 (181)
.+...|+++|++|+||||+++.+.+. .. .+..+.. ......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 56678999999999999999999631 11 0111100 000000
Q ss_pred ----------EEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 56 ----------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+...++.+.++||||....... ....+|++++|+|+.....++.... .. .+.|.++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~ 201 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVI 201 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEE
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEE
Confidence 0134678999999997554432 3578999999999964432111000 00 146889999
Q ss_pred eCCCCCCCCCHh----HHHhhhCC-C-ccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 126 NKQDLPNAMNAA----EITDKLGL-H-SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 126 nK~D~~~~~~~~----~~~~~~~~-~-~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
||+|+....... ++...+.. . ....+..+++++||++|.|+++++++|.+.+.
T Consensus 202 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 202 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999987532222 22221111 1 00112347899999999999999999988653
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.60 E-value=4.4e-15 Score=121.89 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=97.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc-c-cccCccc------------------------------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIG------------------------------------------ 50 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~-~~~~t~~------------------------------------------ 50 (181)
..-++|+|+|.+++|||||+|+|++..+ + ...+++.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999765 1 1111110
Q ss_pred ----------ceEEEEEEC-CEEEEEEEcCCCCC-------------ccccccccc-ccccEEEEEEECCCcccHHHHHH
Q 030193 51 ----------FNVETVEYK-NISFTVWDVGGQDK-------------IRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARD 105 (181)
Q Consensus 51 ----------~~~~~~~~~-~~~~~~~d~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~ 105 (181)
.....+... ...+.|+||||-.. .......|+ ..+|++++|+|++....-....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l- 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence 001112222 23688999999533 112233333 4689999999997643222211
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 ~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
.+...+.. .+.|+++|+||+|+.+.... ..+... ..........+++++||++|.|++++++.+.+
T Consensus 208 ~ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 208 KIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 23344443 47899999999999865332 222221 11111112346889999999999999998876
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.59 E-value=1.6e-16 Score=116.15 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=93.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhh-----cCCcc--cccCccc-c------------eEEEE------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK-----LGEIV--TTIPTIG-F------------NVETV------------------ 56 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~-----~~~~~--~~~~t~~-~------------~~~~~------------------ 56 (181)
.+...+++.|.+|+||||+++.+. +.... +..+... . .....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 567788899999999999999997 44321 2111100 0 00000
Q ss_pred ------------E-ECCEEEEEEEcCCCCCcccccc------cccccccEEEEEEECCCcccHHHHHHH---HHHHhcCC
Q 030193 57 ------------E-YKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDE---LHRMLNED 114 (181)
Q Consensus 57 ------------~-~~~~~~~~~d~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~ 114 (181)
. ..++.+.+|||||......... ..+.. +++++++|+....+....... .......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~- 169 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR- 169 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc-
Confidence 0 0135899999999866543221 23355 899999998543322222211 1111111
Q ss_pred CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-C----c------------------cC--CcceEEEEcccCCCCCHHHH
Q 030193 115 ELRDAVLLVFANKQDLPNAMNAAEITDKLGL-H----S------------------LR--QRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 115 ~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~----~------------------~~--~~~~~~~~~S~~~~~~i~~~ 169 (181)
.+.|+++|+||+|+......+++...+.. . . ++ ....+++++|++++.|++++
T Consensus 170 --~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l 247 (262)
T 1yrb_A 170 --LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL 247 (262)
T ss_dssp --HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred --cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence 36899999999998754322111111000 0 0 00 11236789999999999999
Q ss_pred HHHHHHHhh
Q 030193 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~l~ 178 (181)
+++|.+.+.
T Consensus 248 ~~~i~~~~~ 256 (262)
T 1yrb_A 248 ETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988764
No 206
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.59 E-value=4.1e-14 Score=107.48 Aligned_cols=80 Identities=23% Similarity=0.247 Sum_probs=57.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-ccc--CcccceEEEEEECC-----------------EEEEEEEcCCCCCcc-
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR- 75 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~~- 75 (181)
.++|+++|.+|+|||||+|++++..+. ... .|.+.+...+...+ ..+++||+||..++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987642 222 24444444444443 579999999987653
Q ss_pred ---cc---cccccccccEEEEEEECCC
Q 030193 76 ---PL---WRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 76 ---~~---~~~~~~~~d~~i~v~d~~~ 96 (181)
.. +..+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2234689999999999975
No 207
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.53 E-value=2.2e-14 Score=102.54 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=84.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCccc-ccCccc----------------ceEEEEEEC------------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG----------------FNVETVEYK------------------ 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~----------------~~~~~~~~~------------------ 59 (181)
.+.++|+++|++|||||||+++|+...+.. ..++.+ .....++..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 467899999999999999999998764321 111111 111112100
Q ss_pred --CEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CC
Q 030193 60 --NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MN 135 (181)
Q Consensus 60 --~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~ 135 (181)
+..+.++|++|.-.... .+-...+..+.++|+........ .....+ +.|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~------~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGIM------KTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHHH------TTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhHh------hcCCEEEEeccccCchhHHH
Confidence 11455666665311111 11123445566777532111100 001111 4678999999998643 23
Q ss_pred HhHHHhhhCCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhhh
Q 030193 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179 (181)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~~ 179 (181)
.+++...... + ..+.+++++||++|.|++++++++.+.+..
T Consensus 184 ~~~~~~~~~~--~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 184 IKKMENDAKR--I-NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHH--H-CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--h-CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3433332211 0 123579999999999999999999987754
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.48 E-value=2.2e-13 Score=103.91 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=55.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--cccceEEEEEE---------------------CCEEEEEEEcCCCCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY---------------------KNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~---------------------~~~~~~~~d~~g~~~ 73 (181)
++|+++|.+|+|||||+|++++.... ...| |...+...... .+..+++||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 68999999999999999999876421 2222 33333333322 246799999999865
Q ss_pred ccc-------ccccccccccEEEEEEECCC
Q 030193 74 IRP-------LWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 ~~~-------~~~~~~~~~d~~i~v~d~~~ 96 (181)
+.. .+..+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 431 12234689999999999975
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.46 E-value=2.7e-13 Score=102.58 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=88.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc------CCcc--cccCcc--------------c-----ceEEE------------
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL------GEIV--TTIPTI--------------G-----FNVET------------ 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~--~~~~t~--------------~-----~~~~~------------ 55 (181)
.....++++|++|||||||++.+.+ .... ...++. + ...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999973 2211 111100 0 00000
Q ss_pred ----------EEECCEEEEEEEcCCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030193 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 56 ----------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
++..+..+.++||+|-..-.. .....+|.+++|+|+...+..+...... ...+.++++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvl 200 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAV 200 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEE
Confidence 122578899999999643221 2346799999999986432211110000 124667888
Q ss_pred eCCCCCCCCC-----HhHHHhhhCCCcc--CCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 126 NKQDLPNAMN-----AAEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 126 nK~D~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
||+|+..... .+++......... .....+++.+|++++.|++++++.|.+...
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999754221 1222222211110 011236788999999999999999987653
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.34 E-value=1.8e-12 Score=96.67 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCCcccccccccccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030193 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~ 146 (181)
++++......+++++|++++|+|+.++. ++..+..|+..... .++|+++|+||+|+.+... .+++...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~---- 137 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISI---- 137 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHH----
Confidence 7888888888999999999999999885 88877777764433 4799999999999975421 1222221
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
++..+++++++||++|.|++++++.+..
T Consensus 138 -~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 138 -YRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp -HHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred -HHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 1223457999999999999999987653
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=99.59 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=52.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcc-ccc--CcccceEEEEEEC-----------------CEEEEEEEcCCCCCc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~~ 74 (181)
....+|+++|.+|+|||||+|++++..+. ... .|.+.+...+... ...+++||+||...+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45789999999999999999999988652 222 2444444444433 236999999997664
Q ss_pred cc-------ccccccccccEEEEEEECCCcc
Q 030193 75 RP-------LWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 75 ~~-------~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
.. .+..+++.+|++++|+|+.+.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 43 3556678999999999997543
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.09 E-value=1.6e-10 Score=91.47 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=88.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhh------cCCcc--cc---cCc-----------ccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IPT-----------IGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~--~~---~~t-----------~~~~~~~~----------------- 56 (181)
....|+++|.+||||||++++|. +.... +. .+. .++.+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35579999999999999999998 44321 11 110 01111110
Q ss_pred EECCEEEEEEEcCCCCCccc-ccc---cc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCC
Q 030193 57 EYKNISFTVWDVGGQDKIRP-LWR---HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQD 129 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D 129 (181)
...++.+.|+||||...... .+. .+ ...+|.+++|+|+............+.+ .+|+ ++|+||.|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCCc
Confidence 11567899999999754221 111 11 1268999999999764332122122211 2564 89999999
Q ss_pred CCCCCC-HhHHHhhhCCCcc-----CC-cc----eEEEEcccCCCCC-HHHHHHHHHHH
Q 030193 130 LPNAMN-AAEITDKLGLHSL-----RQ-RH----WYIQSTCATSGEG-LYEGLDWLSNN 176 (181)
Q Consensus 130 ~~~~~~-~~~~~~~~~~~~~-----~~-~~----~~~~~~S~~~~~~-i~~~~~~i~~~ 176 (181)
...... ...+...++.+.. +. .+ .+.+.+|+..|.| ++++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 875433 2233344433220 00 00 1234579999999 99999998754
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=1.6e-10 Score=89.37 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=71.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-----cCcccceEEEE--EECC--EEEEEEEcCCCCCcc------------
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV--EYKN--ISFTVWDVGGQDKIR------------ 75 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~--~~~~--~~~~~~d~~g~~~~~------------ 75 (181)
.++++|+|++|+|||||++.+.+..+... .+........+ .... ..++++|++|-....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 34699999999999999999998754211 11111111112 1122 378999999853220
Q ss_pred --cccc----cc---------ccc--ccE-EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh
Q 030193 76 --PLWR----HY---------FQN--TQG-LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137 (181)
Q Consensus 76 --~~~~----~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~ 137 (181)
..+. .+ ... .|. ++++.|... ++...+..+.+.+. .++|+|+|.||+|.....+..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLDLVTMKKLD----SKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHHHHHHHHHh----hCCCEEEEEcchhccchHHHH
Confidence 0111 11 112 233 445555532 33344445555554 479999999999987654444
Q ss_pred HHHhhhCCCccCCcceEEEEccc
Q 030193 138 EITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.+...+. ..+...+++++.+|.
T Consensus 196 ~l~~~I~-~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 196 KFKIKIT-SELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHH-HHHBTTBCCCCCCC-
T ss_pred HHHHHHH-HHHHHcCCcEEecCC
Confidence 3333221 112334555555554
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.03 E-value=8.9e-11 Score=89.81 Aligned_cols=100 Identities=19% Similarity=0.141 Sum_probs=67.2
Q ss_pred CCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcc
Q 030193 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSL 148 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~ 148 (181)
..++|++.+..+.+.++++++|+|+.++. ......+.+++ .+.|+++|+||+|+.+... .+++.... ...+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l-~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWM-RYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHH-HHHH
Confidence 46789999999999999999999998753 11112233332 3689999999999976432 22222111 0011
Q ss_pred CCcce---EEEEcccCCCCCHHHHHHHHHHHh
Q 030193 149 RQRHW---YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 149 ~~~~~---~~~~~S~~~~~~i~~~~~~i~~~l 177 (181)
+..++ +++.+||++|.|++++++.+.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 11222 688999999999999999997754
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=1.2e-09 Score=84.03 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=59.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCc-c-cccC--cccceEEEEEECC-----------------EEEEEEEcCCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~ 73 (181)
....+++++|++|+|||||+|+|++... . .+.| |...+...+...+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4567999999999999999999999764 2 3333 4455555555554 5789999999432
Q ss_pred -------cccccccccccccEEEEEEECCC
Q 030193 74 -------IRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 -------~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
....+...++.+|.+++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455678999999999863
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=1.1e-10 Score=89.29 Aligned_cols=113 Identities=9% Similarity=0.118 Sum_probs=67.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC------Cc-ccccCcccceEEEEEECCEEEEEEEcCCCCCccc--------cccc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG------EI-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~------~~-~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~ 80 (181)
...+|+++|.+|+|||||+|+|++. .. .+..|.+......+... ..+.++||||-..... ....
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 3568999999999999999999986 22 13333222333333332 2389999999432211 1111
Q ss_pred cc--ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 81 YF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 81 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
++ ...+.++|++++...--+..... ...+.. .+.|+++++||.|..+..
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~~---~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR--LDYIKG---GRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE--EEEEES---SSEEEEEEECTTSCEEEE
T ss_pred HhcccccCceEEEEcCCceEEECCEEE--EEEccC---CCceEEEEecCCcccccc
Confidence 21 56899999999842210001100 112222 468999999999987643
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.00 E-value=1.2e-10 Score=89.18 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=68.4
Q ss_pred CCCCCcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCc
Q 030193 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHS 147 (181)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~ 147 (181)
..+++|++...++++.++++++|+|+.++.+ .....+.+.+ .+.|+++|+||+|+.+... .+.+.... ...
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l-~~~ 127 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWM-RRM 127 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHH-HHH
Confidence 3578899999999899999999999988653 1222233332 3689999999999976532 22222111 011
Q ss_pred cCCcce---EEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 148 LRQRHW---YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~---~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
++..++ +++.+||++|.|++++++.+.+...
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 112222 6889999999999999999987654
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.98 E-value=1.1e-09 Score=80.42 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=64.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc---------cC-cccceEEEEEE----CCEEEEEEEcCCCCCccc------
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---------IP-TIGFNVETVEY----KNISFTVWDVGGQDKIRP------ 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~-t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~------ 76 (181)
.++++++|++|+|||||+|.+++...+.. .+ +.......+-. -...++++|++|-.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999987543211 11 11111111111 123789999998321000
Q ss_pred -c---------------------cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030193 77 -L---------------------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 77 -~---------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
. ....+..+++.++++|... .++...+..+.+.+.. ..++++|++|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 0 0011223578889999641 2223333444444543 38999999999987654
Q ss_pred C
Q 030193 135 N 135 (181)
Q Consensus 135 ~ 135 (181)
+
T Consensus 157 e 157 (270)
T 3sop_A 157 E 157 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.91 E-value=9.7e-10 Score=84.06 Aligned_cols=115 Identities=8% Similarity=0.134 Sum_probs=66.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC------cc--cccCcccceEEEEEECCEEEEEEEcCCCCCcccc--------cc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE------IV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WR 79 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~------~~--~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~ 79 (181)
...+|+++|.+|+|||||+|++++.. .. +..|.+......+... ..+.++||||-...... ..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 35789999999999999999998753 11 2223221222223322 23899999994322111 11
Q ss_pred cc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030193 80 HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (181)
Q Consensus 80 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 136 (181)
.+ ....+..+|++++...--+.... ....+.. .+.|+++++||.|..+..+.
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~~d~l~~---~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA--RFDYVSG---GRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES---SSEEEEEEECTTSCEEEEEH
T ss_pred HhccccccCceEEEEcCCCEEEEcceE--EEEEecC---CCceEEEEecCccccccccH
Confidence 11 24578889999884211000100 0112222 46899999999998765433
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.88 E-value=1.2e-08 Score=78.86 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=83.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcccc-------cCcccceEEEEEECCE-EEEEEEcCCCCCcccccccc-----c
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-------IPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHY-----F 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~~~~~-----~ 82 (181)
....++++|++|+|||||+|.+.+....+. .++... ...+..... .++++|++|..........+ +
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 456899999999999999999998543211 111111 111222222 58999999843211111111 2
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhhhCCCc---cCC
Q 030193 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP---------NAMNAAEITDKLGLHS---LRQ 150 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~---------~~~~~~~~~~~~~~~~---~~~ 150 (181)
...+..++ ++.... +..+..+.+.+.. .+.|+++|.||.|+. +....+++...+.... +..
T Consensus 147 ~~~~~~~~-lS~G~~---~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRF---KKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCC---CHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCc---cHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23455554 676521 1222223333332 368999999999864 2222232222111100 000
Q ss_pred ---cceEEEEccc--CCCCCHHHHHHHHHHHhh
Q 030193 151 ---RHWYIQSTCA--TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 151 ---~~~~~~~~S~--~~~~~i~~~~~~i~~~l~ 178 (181)
....++.+|+ .++.|++++.+.+.+.+.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 0124677899 456679999999988764
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=2.3e-09 Score=79.15 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=67.6
Q ss_pred EEEcCCCC-CcccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030193 65 VWDVGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 65 ~~d~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
+-..|||. .........+..+|+++.|+|+.++.+..+ ..+.+++ .++|.++|+||+|+.+....+.+...+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44578885 344555667789999999999988765532 1233333 368999999999998643333333332
Q ss_pred CCCccCCcceEEEEcccCCCCCHHHHHHHHHHHhh
Q 030193 144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 144 ~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~l~ 178 (181)
+..+++++.+|++++.|++++++.+.+.+.
T Consensus 76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 123446889999999999999998887664
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.68 E-value=2.3e-08 Score=73.81 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=37.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCCcccc--cC--cccceEEEEEECCEEEEEEEcCCCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~d~~g~~ 72 (181)
...++|+++|.+|+|||||+|++.+...... .| |.... .+.. +..+.++||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence 4678999999999999999999998774322 22 22222 2222 3468999999953
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.65 E-value=5.4e-09 Score=76.34 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCcccce--EEEEEECCEEEEEEEcCCCCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~d~~g~~~ 73 (181)
++++++|.+|+|||||+|++.+.......++.+.. ...+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 69999999999999999999988764333222211 112222 34789999999543
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.39 E-value=4.7e-07 Score=72.95 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=41.2
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcc-ccc-----CcccceEEEEE---ECCEEEEEEEcCCCCC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI-----PTIGFNVETVE---YKNISFTVWDVGGQDK 73 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~-----~t~~~~~~~~~---~~~~~~~~~d~~g~~~ 73 (181)
....+.|+|+|.+|+|||||+|+|++.... ... .|.+....... ..+..+.++||||-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 356688999999999999999999987632 221 23333222111 2467899999999543
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.36 E-value=1.9e-06 Score=67.13 Aligned_cols=110 Identities=19% Similarity=0.223 Sum_probs=62.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc------CCcc--c---ccC-----------cccceEEEE-----------------E
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---TIP-----------TIGFNVETV-----------------E 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~------~~~~--~---~~~-----------t~~~~~~~~-----------------~ 57 (181)
...|+++|++|+||||++..|.. ..+. . ..+ ..+...... .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999998863 2210 1 111 011111110 0
Q ss_pred ECCEEEEEEEcCCCCCcccc----cc--cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030193 58 YKNISFTVWDVGGQDKIRPL----WR--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
..++.+.|+||+|....... .. .....+|.+++|+|+...+.-......+.+ .-.+..+|+||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~-------~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE-------ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH-------SCTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh-------hCCCeEEEEECCCCc
Confidence 13478999999995432211 11 111357899999999754332222222222 124567999999986
Q ss_pred CC
Q 030193 132 NA 133 (181)
Q Consensus 132 ~~ 133 (181)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.34 E-value=5e-07 Score=70.39 Aligned_cols=108 Identities=21% Similarity=0.222 Sum_probs=62.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC------Ccc--ccc--------------------------Cccc---ceEEEE-EE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG------EIV--TTI--------------------------PTIG---FNVETV-EY 58 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~------~~~--~~~--------------------------~t~~---~~~~~~-~~ 58 (181)
...|+++|++|+||||+++.|... ... +.. .+.+ .....+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999652 110 100 0001 000000 01
Q ss_pred CCEEEEEEEcCCCCCcccc----c--ccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC-e-EEEEEeCCCC
Q 030193 59 KNISFTVWDVGGQDKIRPL----W--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-V-LLVFANKQDL 130 (181)
Q Consensus 59 ~~~~~~~~d~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-iivv~nK~D~ 130 (181)
.++.+.|+||||....... . ......+|.+++|+|+..... ..... ..+. ... | ..+|+||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~-~~~~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQA-KAFK----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHH-HHHH----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHH-HHHh----hcccCCeEEEEeCCCC
Confidence 5678999999996542111 1 111236899999999864332 11212 2222 134 5 8999999998
Q ss_pred CC
Q 030193 131 PN 132 (181)
Q Consensus 131 ~~ 132 (181)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.34 E-value=4.7e-07 Score=73.53 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..++|+|+.|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 469999999999999999998864
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.23 E-value=1.1e-07 Score=69.45 Aligned_cols=93 Identities=8% Similarity=0.005 Sum_probs=58.5
Q ss_pred cCCCCCc-ccccccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030193 68 VGGQDKI-RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (181)
Q Consensus 68 ~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~ 146 (181)
.|||... .......+.++|+++.|+|+.++.+..+.. +. + . ++|.++|+||+|+.+....+.+...+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 5776432 234455668999999999998775543211 11 1 1 689999999999986433333333221
Q ss_pred ccCCcceEEEEcccCCCCCHHHHHHHHHH
Q 030193 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 175 (181)
..++++ .+|++++.|++++++.+.+
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 223456 8999999999999887654
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.22 E-value=3.1e-07 Score=68.36 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=57.0
Q ss_pred cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccCCcce
Q 030193 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~ 153 (181)
......++|.+++|+|+.+|..-.+..+.+...... .++|.++|+||+|+.+... .+++...+ +..++
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g~ 151 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIGY 151 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHTC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCCC
Confidence 334568899999999998654333333333332222 4789999999999987533 23343333 22234
Q ss_pred EEEEcccCCCCCHHHHHHH
Q 030193 154 YIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 154 ~~~~~S~~~~~~i~~~~~~ 172 (181)
+++.+|+.++.|++++++.
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 6888999999998877654
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.00 E-value=1.4e-05 Score=60.59 Aligned_cols=83 Identities=17% Similarity=0.112 Sum_probs=53.2
Q ss_pred ccccccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccCCcceEEE
Q 030193 81 YFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 156 (181)
...++|.+++|.... |. +...++.++... .. .++|.++|+||+|+.+... .+++... ++..+++++
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a-~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~-----y~~~G~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGC-ET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDI-----YRNIGYRVL 196 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHH-HH---HTCEEEEEEECGGGCCHHHHHHHHHHHHH-----HHTTTCCEE
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCchhHHHHHHHHHH-----HHhCCCcEE
Confidence 457899999886654 43 333333333221 11 3688899999999986532 2223332 234455788
Q ss_pred EcccCCCCCHHHHHHHH
Q 030193 157 STCATSGEGLYEGLDWL 173 (181)
Q Consensus 157 ~~S~~~~~~i~~~~~~i 173 (181)
.+|++++.|++++...+
T Consensus 197 ~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHhc
Confidence 99999999999987754
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.93 E-value=3.8e-06 Score=65.36 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=62.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc------CCcc--c---ccC-----------cccceEEE-----------------EE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---TIP-----------TIGFNVET-----------------VE 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~------~~~~--~---~~~-----------t~~~~~~~-----------------~~ 57 (181)
..-|+++|++|+||||++..|.. ..+. + ..+ ..+..... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 45788999999999999998862 2210 0 000 01111110 00
Q ss_pred ECCEEEEEEEcCCCCC--cc----cccccc--cccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030193 58 YKNISFTVWDVGGQDK--IR----PLWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~--~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
..++.+.++||||... .. ...... ....+.+++|+|+...+........+.+. -.+..+|+||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1357889999999644 11 111111 12468999999997543333333334332 245789999999
Q ss_pred CCC
Q 030193 130 LPN 132 (181)
Q Consensus 130 ~~~ 132 (181)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 764
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.89 E-value=3.7e-05 Score=56.98 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=61.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc------CCcc--ccc---C-----------cccceEEE-----------------EE
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--TTI---P-----------TIGFNVET-----------------VE 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~------~~~~--~~~---~-----------t~~~~~~~-----------------~~ 57 (181)
...|+++|++|+||||++..+.. .... +.. + ..++.+.. ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 44678999999999999998863 2211 100 1 00111100 01
Q ss_pred ECCEEEEEEEcCCCCC--ccc-ccc-----cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCC
Q 030193 58 YKNISFTVWDVGGQDK--IRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (181)
Q Consensus 58 ~~~~~~~~~d~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~ 128 (181)
..++.+.++||||... ... ... .....+|.+++|+|+..... .......+.. ..| ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1467899999999766 211 111 12346899999999864322 2222222211 244 67899999
Q ss_pred CCCC
Q 030193 129 DLPN 132 (181)
Q Consensus 129 D~~~ 132 (181)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.86 E-value=5.5e-07 Score=71.00 Aligned_cols=110 Identities=23% Similarity=0.238 Sum_probs=61.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcCCcccccCcccceE----EEEEECCEEEEEEEcCCCCC--ccccc--------c
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV----ETVEYKNISFTVWDVGGQDK--IRPLW--------R 79 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~--~~~~~--------~ 79 (181)
......|+++|.+||||||+.++|.........++..+.. ...........+||..|.+. .+..+ .
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3557799999999999999999997643211122211110 00001113346788888732 33333 4
Q ss_pred cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030193 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
.++...++.++|+|.++. ....... |...+.. .+.+++.+-..+
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~---~~~~vv~l~~~~ 159 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQ---NGYKTFFVESIC 159 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHH---HTCEEEEEEECC
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHh---cCCcEEEEEEEC
Confidence 556667888999999876 3433333 3333332 134555444333
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.76 E-value=2.9e-05 Score=60.58 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=21.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-|.|+|++++|||+|+|++++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3445779999999999999999863
No 235
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.62 E-value=3.4e-05 Score=55.43 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=21.3
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhh
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
+++..........|+++|++||||||+++.+.
T Consensus 17 ~~~~~~~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 17 NLYFQSMASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ---------CCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 44444444556789999999999999999998
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.59 E-value=3.6e-05 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.59 E-value=0.00022 Score=55.57 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=61.6
Q ss_pred cceEEEEcCCCCChHHHHhhhh-------cCCcc--cccC--------------cccceEEE-----------------E
Q 030193 17 EMRILMVGLDAAGKTTILYKLK-------LGEIV--TTIP--------------TIGFNVET-----------------V 56 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~-------~~~~~--~~~~--------------t~~~~~~~-----------------~ 56 (181)
...|+++|.+|+||||++..|. +.... +..+ ..++.... .
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4568899999999999998886 33211 1111 00111100 0
Q ss_pred EECCEEEEEEEcCCCCCccc-ccc-----cccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCC
Q 030193 57 EYKNISFTVWDVGGQDKIRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQD 129 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D 129 (181)
...++.+.|+||||...... ... .....++.+++|+|+............+.. ..+ .-+|+||.|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~--------~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNE--------ALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHH--------HSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhc--------cCCCeEEEEecCC
Confidence 11467899999999654321 111 113468899999999743322222222211 233 357999999
Q ss_pred CCCC
Q 030193 130 LPNA 133 (181)
Q Consensus 130 ~~~~ 133 (181)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7543
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4e-05 Score=52.47 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.--++++|++|||||||++.+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.50 E-value=4.9e-05 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.-.++++|++|||||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999976
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.42 E-value=6.9e-05 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.--++++|++||||||+++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 446899999999999999999764
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.41 E-value=7.2e-05 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
-++++|++||||||+++.+.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 36899999999999999998643
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.41 E-value=9.8e-05 Score=51.37 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=23.4
Q ss_pred hhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+....--|+++|++|+|||||++.|.+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34456678899999999999999999864
No 243
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.40 E-value=8.6e-05 Score=51.97 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+|+|++|||||||++.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999988653
No 244
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.39 E-value=0.0001 Score=51.58 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=22.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
....-|+++|++||||||+++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345578999999999999999998654
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.38 E-value=0.0001 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-.|+++|++||||||+++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999875
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.37 E-value=8.7e-05 Score=51.88 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...--++++|++|||||||++.+.+-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445568999999999999999997643
No 247
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.37 E-value=7.1e-05 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=16.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhh-cC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLK-LG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~-~~ 40 (181)
..--++++|++||||||+++.+. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34568999999999999999998 64
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.35 E-value=9.4e-05 Score=52.25 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|||||||++.+.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45568999999999999999998743
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.34 E-value=9.9e-05 Score=52.25 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..--++++|++|||||||++.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45578899999999999999998753
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.33 E-value=9.8e-05 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=19.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 344678999999999999997553
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.28 E-value=0.00015 Score=48.76 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCChHHHHhhh
Q 030193 18 MRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l 37 (181)
..|++.|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 252
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.27 E-value=0.00018 Score=48.95 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...-.+++.|++|+|||+|++.+.+.-
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999987644
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.27 E-value=0.00014 Score=52.01 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
..=.++++|+.|||||||++.+.+-..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 344689999999999999999987653
No 254
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.26 E-value=0.00016 Score=50.54 Aligned_cols=26 Identities=35% Similarity=0.312 Sum_probs=21.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|++|||||||++.+.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998763
No 255
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.26 E-value=0.00017 Score=50.01 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
....|+++|++||||||+++.+.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35578999999999999999997754
No 256
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.25 E-value=0.00015 Score=48.90 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 257
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.25 E-value=0.00019 Score=49.79 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=22.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|++.|++||||||+++.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999864
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.23 E-value=0.00017 Score=49.73 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 259
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.23 E-value=0.00023 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+++.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.22 E-value=0.00017 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-|+++|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3557899999999999999999754
No 261
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.22 E-value=0.00016 Score=54.82 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.-.++++|++|+|||||+|.+.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 44789999999999999999998654
No 262
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.20 E-value=0.0002 Score=49.71 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+++.|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 263
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.20 E-value=0.00018 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|||||||++.+.+-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998764
No 264
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.20 E-value=0.00022 Score=48.22 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=20.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+++.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 355789999999999999998864
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.19 E-value=0.00019 Score=48.15 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34468999999999999999998765
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.19 E-value=0.00018 Score=49.33 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.18 E-value=0.00021 Score=48.06 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|++||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.17 E-value=0.00024 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 269
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.16 E-value=0.00025 Score=48.04 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|++.|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 270
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.16 E-value=0.00024 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|+++|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 271
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.15 E-value=0.00048 Score=46.73 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=25.2
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+.........-.+++.|++|+|||++++.+...
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333333345567999999999999999988764
No 272
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.15 E-value=0.00022 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
=.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998864
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.14 E-value=0.00022 Score=52.24 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|||||||++.+.+-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4468999999999999999998754
No 274
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.13 E-value=0.00023 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=.++++|+.|||||||++.+.+-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467899999999999999998764
No 275
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.13 E-value=0.00024 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|||||||++.+.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999998765
No 276
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.13 E-value=0.00027 Score=48.87 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+...|+|.|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 55678999999999999999998764
No 277
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.12 E-value=0.00024 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|+|||||++.+.+-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998864
No 278
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.12 E-value=0.00027 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
++|++.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
No 279
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.12 E-value=0.00026 Score=49.14 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+|+++|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999876
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.11 E-value=0.00024 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468899999999999999998754
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.11 E-value=0.00025 Score=51.42 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999998754
No 282
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.11 E-value=0.00033 Score=47.95 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44678999999999999999998765
No 283
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.10 E-value=0.00029 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
++|++.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999954
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.09 E-value=0.00029 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|||||||++.+.+-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999998764
No 285
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.09 E-value=0.00025 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++++|++|+||||+++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998764
No 286
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.09 E-value=0.00027 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|+|||||++.+.+-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468899999999999999998864
No 287
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.09 E-value=0.00032 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+++.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 288
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.09 E-value=0.00027 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...-.++|+|++|+|||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4456799999999999999999875
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.09 E-value=0.00036 Score=48.38 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|++||||||+.+.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988654
No 290
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.09 E-value=0.0003 Score=50.57 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 291
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.08 E-value=9.5e-05 Score=55.00 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|++|+|||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4578999999999999999998754
No 292
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.08 E-value=0.00031 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.08 E-value=0.00033 Score=47.87 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+++.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999854
No 294
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.07 E-value=0.00027 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.-.++++|++|+|||||+|.+.+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 44678999999999999999988653
No 295
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.06 E-value=0.00028 Score=51.31 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-.++++|++||||||+++.+.+-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 44557899999999999999999763
No 296
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.06 E-value=0.00029 Score=51.24 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34467899999999999999998764
No 297
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.06 E-value=0.00033 Score=47.81 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 298
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.06 E-value=0.0003 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999998864
No 299
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.06 E-value=0.00025 Score=49.78 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-.++++|+.|+|||||++.+.+-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999876
No 300
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.05 E-value=0.0003 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|||||||++.+.+-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468899999999999999998754
No 301
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.05 E-value=0.00036 Score=52.18 Aligned_cols=24 Identities=38% Similarity=0.272 Sum_probs=20.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhh
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
...+-|+|+|++||||||+++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455679999999999999998884
No 302
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.05 E-value=0.00037 Score=48.30 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+.+.|..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999864
No 303
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.04 E-value=0.00032 Score=50.63 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999998764
No 304
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.04 E-value=0.00032 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.=.++++|+.|+|||||++.+.+-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999985
No 305
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.04 E-value=0.00035 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34478999999999999999998753
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.04 E-value=0.00035 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 5567899999999999999999876
No 307
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.03 E-value=0.0004 Score=47.36 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999853
No 308
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.03 E-value=0.00039 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|+.||||||+++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999866
No 309
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.03 E-value=0.00034 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|.+.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 310
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.02 E-value=0.00034 Score=51.11 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 311
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.02 E-value=0.0006 Score=47.35 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|++||||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 312
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.02 E-value=0.00036 Score=47.72 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.01 E-value=0.00043 Score=48.18 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|++||||||+++.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999764
No 314
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.01 E-value=0.00038 Score=48.09 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999865
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.01 E-value=0.00042 Score=47.45 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 316
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.01 E-value=0.00035 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..=.++++|+.|+|||||++.+.+-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446889999999999999999986
No 317
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.00 E-value=0.00043 Score=48.49 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|+++|+|||||+|.+..|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 318
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.99 E-value=0.00036 Score=50.43 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=.++++|+.|||||||++.+.+-..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999988653
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.99 E-value=0.00035 Score=49.19 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||++.+.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344688999999999999999987
No 320
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.99 E-value=0.00041 Score=50.92 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999998754
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.99 E-value=0.00038 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468899999999999999998754
No 322
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.00044 Score=47.29 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|.+||||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998653
No 323
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.98 E-value=0.00038 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-++++|++|+|||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346789999999999999999864
No 324
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.98 E-value=0.0006 Score=46.12 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=24.8
Q ss_pred HHHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 8 LFSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
+...........+++.|++|+|||+++..+...
T Consensus 34 l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 34 AIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 333333345668899999999999999988654
No 325
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.98 E-value=0.00047 Score=49.46 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+|++.|++||||||+++.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999964
No 326
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.97 E-value=0.00039 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|++|+|||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4567999999999999999998 54
No 327
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.96 E-value=0.00055 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998876
No 328
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.96 E-value=0.00047 Score=48.32 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+|++.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999854
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.00048 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 330
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.96 E-value=0.00054 Score=47.38 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...|++.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 567999999999999999999765
No 331
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.96 E-value=0.00047 Score=46.83 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=21.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|++.|++||||||+++.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999999863
No 332
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.95 E-value=0.00055 Score=48.13 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+...|+++|.+||||||+++.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999854
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.95 E-value=0.0005 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.95 E-value=0.00049 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
No 335
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.94 E-value=0.00049 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|+++|++||||||+++.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999854
No 336
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.94 E-value=0.00051 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+...|++.|++||||||+++.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999863
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.94 E-value=0.00057 Score=46.92 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|++.|++||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 338
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.94 E-value=0.00061 Score=50.28 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+|+|++|||||||++.+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5677899999999999999988743
No 339
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.94 E-value=0.00057 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhh
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.....|+|+|++||||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999998
No 340
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.93 E-value=0.00044 Score=49.31 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhh
Q 030193 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
..--++++|++|||||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34568899999999999999887
No 341
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.00022 Score=48.45 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030193 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.++|+|++|||||||++.+.+-.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998753
No 342
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.00052 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|+|||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468899999999999999998865
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.90 E-value=0.00048 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 344
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.90 E-value=0.00034 Score=52.02 Aligned_cols=26 Identities=35% Similarity=0.276 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|||||||++.+.+-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34578999999999999999998743
No 345
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.89 E-value=0.00066 Score=47.30 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+...|++.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.88 E-value=0.00067 Score=46.98 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+...|++.|.+||||||+++.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998864
No 347
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.88 E-value=0.00058 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|++.|++||||||+++.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999964
No 348
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.87 E-value=0.00043 Score=52.65 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-+++|+|++|+|||||++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 349
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.87 E-value=0.00069 Score=47.13 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|++.|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999965
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.85 E-value=0.00066 Score=45.44 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 351
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.85 E-value=0.00047 Score=46.83 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=16.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 352
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.84 E-value=0.00063 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.-.++++|+.|+|||||++.+.+-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999998764
No 353
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.84 E-value=0.00058 Score=51.93 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.--++++|+.|||||||++.+.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3467899999999999999998754
No 354
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.83 E-value=0.00047 Score=45.68 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|+|||+|++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998744
No 355
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.83 E-value=0.00058 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999998854
No 356
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.82 E-value=0.0008 Score=47.80 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|.+||||||+++.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999854
No 357
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.82 E-value=0.0006 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+++.|++|+|||+|++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999864
No 358
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.78 E-value=0.00079 Score=47.54 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 359
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.77 E-value=0.0015 Score=46.11 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=21.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-.+++.|++|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988653
No 360
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.77 E-value=0.0007 Score=50.88 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.7
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|||||||++.+.+-.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999998754
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.76 E-value=0.00069 Score=50.32 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=66.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCCcc--------c---ccCc-----------ccceEEEE-----------------
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--------T---TIPT-----------IGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--------~---~~~t-----------~~~~~~~~----------------- 56 (181)
..-.++++|++||||||+++.+.+.... . ..+. .++.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999999642100 0 0000 01111000
Q ss_pred EECCEEEEEEEcCCCCCcccc------------cccccccccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030193 57 EYKNISFTVWDVGGQDKIRPL------------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~~~d~~g~~~~~~~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...+....++|++|....... ........+.+++++|+............+.+... ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~-------~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcC-------CcEEE
Confidence 002345678999995332110 11223457888899998755433333333332221 35788
Q ss_pred EeCCCCCCCC-CHhHHHhhhCCC
Q 030193 125 ANKQDLPNAM-NAAEITDKLGLH 146 (181)
Q Consensus 125 ~nK~D~~~~~-~~~~~~~~~~~~ 146 (181)
+||.|....- ....+....+.+
T Consensus 254 vTh~d~~a~gg~~l~i~~~~~~p 276 (304)
T 1rj9_A 254 VTKLDGTAKGGVLIPIVRTLKVP 276 (304)
T ss_dssp EECTTSSCCCTTHHHHHHHHCCC
T ss_pred EECCcccccccHHHHHHHHHCCC
Confidence 9999975332 333455555443
No 362
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.76 E-value=0.00073 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467899999999999999998754
No 363
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.75 E-value=0.00093 Score=45.25 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...++++|++||||||++.++...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 446889999999999999998763
No 364
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.75 E-value=0.0011 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.=.++|+|++||||||+++.+.+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 338999999999999999999763
No 365
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.75 E-value=0.00075 Score=51.64 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3457899999999999999998754
No 366
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.74 E-value=0.00076 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3457899999999999999998754
No 367
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.74 E-value=0.00089 Score=45.79 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 368
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.74 E-value=0.00074 Score=48.52 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 369
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.74 E-value=0.0007 Score=51.50 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...-.++|+|++|||||||++.+.+-.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456689999999999999999998754
No 370
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.74 E-value=0.0008 Score=45.82 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.74 E-value=0.00079 Score=46.24 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999653
No 372
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.74 E-value=0.00099 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
....-|++.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45668999999999999999999765
No 373
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.73 E-value=0.00079 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999998754
No 374
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.72 E-value=0.00098 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 375
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.72 E-value=0.00078 Score=48.61 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.70 E-value=0.00064 Score=49.00 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=21.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998854
No 377
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.70 E-value=0.00034 Score=48.77 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.70 E-value=0.001 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....|++.|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999876
No 379
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.69 E-value=0.00086 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3357899999999999999998764
No 380
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.69 E-value=0.001 Score=47.40 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...+.|++.|++||||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999863
No 381
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.69 E-value=0.00093 Score=44.91 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 382
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.69 E-value=0.001 Score=48.15 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|.+||||||+++.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999865
No 383
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.69 E-value=0.0011 Score=46.25 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
-.+++.||||+|||+++.++.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888865
No 384
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.69 E-value=0.0016 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++|+|++||||||+++.+.+--
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45569999999999999999998754
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.68 E-value=0.00084 Score=49.82 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++++|+.||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999965
No 386
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.68 E-value=0.00089 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|++|||||||++.+.+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467899999999999999998754
No 387
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.68 E-value=0.001 Score=45.35 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|++.|.+||||||+++.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 388
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.68 E-value=0.00094 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=19.1
Q ss_pred ccce-EEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMR-ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~-i~v~G~~~~GKSsli~~l~~ 39 (181)
.+.+ |.++|+|||||+|.+..|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444 45789999999999998864
No 389
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.66 E-value=0.0011 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.-.|++.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998854
No 390
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.66 E-value=0.0009 Score=50.22 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++||||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999965
No 391
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.63 E-value=0.0014 Score=49.97 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-.++|+|++||||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999999763
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.63 E-value=0.0012 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhh
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.+...|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
No 393
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.61 E-value=0.0011 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||+..+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344678999999999999999874
No 394
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.59 E-value=0.00072 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|+.|||||||++.+.+-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3467899999999999999998754
No 395
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.59 E-value=0.0011 Score=50.92 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=.++++|++|||||||++.+.+-.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4468999999999999999998743
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.57 E-value=0.0011 Score=48.31 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999864
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.56 E-value=0.0011 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999764
No 398
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.56 E-value=0.0023 Score=44.29 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..+++.|++|+|||+++..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999988753
No 399
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.53 E-value=0.0019 Score=46.82 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.0
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
......+++.|++|+|||+++..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455668999999999999999998764
No 400
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.53 E-value=0.0023 Score=46.68 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....+++.|++|+|||++++.+.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999999754
No 401
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.52 E-value=0.0028 Score=41.55 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.....|++.|++|+|||+++..+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 567789999999999999999987653
No 402
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.52 E-value=0.0023 Score=49.62 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=21.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...=.++|+|+.||||||+++.+.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 33446899999999999999999764
No 403
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0012 Score=51.86 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...-.++|+|+.|||||||++.+.+-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 456789999999999999999998754
No 404
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.50 E-value=0.0015 Score=47.24 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+...|++.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 56678999999999999999998754
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.48 E-value=0.0029 Score=44.14 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=21.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|.+||||||+++.+...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44567899999999999999988653
No 406
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.48 E-value=0.0014 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999999753
No 407
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.48 E-value=0.0007 Score=51.33 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.=-++++|+.|||||||++.+.+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467899999999999999998765
No 408
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.47 E-value=0.0016 Score=44.25 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999854
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.47 E-value=0.0014 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||+..+.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 344688999999999999998864
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.47 E-value=0.0018 Score=46.02 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-|++.|++||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998653
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.45 E-value=0.0014 Score=49.72 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++++|+.||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44688999999999999999965
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.45 E-value=0.0015 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.-.|+++|++||||||+.+.+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998854
No 413
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.45 E-value=0.0016 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999986
No 414
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.42 E-value=0.0029 Score=41.38 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|++.|++|+|||++++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45678999999999999999988764
No 415
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.41 E-value=0.0017 Score=49.11 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=23.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.+.=+++++|+.|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998864
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.39 E-value=0.0016 Score=51.42 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++++|+.||||||+++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 44688999999999999999864
No 417
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.39 E-value=0.002 Score=44.52 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=22.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|++.|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998653
No 418
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.0017 Score=45.97 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...--++++|++|+|||||+..+...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34556899999999999999999873
No 419
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.36 E-value=0.0021 Score=44.38 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..+++.|++|+|||+|+..+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988753
No 420
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.35 E-value=0.0013 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=17.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998854
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.34 E-value=0.002 Score=42.59 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=17.0
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030193 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~ 38 (181)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999874
No 422
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.32 E-value=0.0026 Score=45.23 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5677899999999999999998864
No 423
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.31 E-value=0.0021 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 424
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.30 E-value=0.0036 Score=49.24 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-......-+++++|++|+|||++++.+...
T Consensus 193 ~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 193 IEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 33333355678999999999999999988654
No 425
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.29 E-value=0.0037 Score=46.14 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-.|++.|++|+|||++++.+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3456999999999999999999764
No 426
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.29 E-value=0.0015 Score=48.11 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=20.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-+++.|+||+|||++++++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999998753
No 427
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.27 E-value=0.0018 Score=48.35 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-++|.|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999865
No 428
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.26 E-value=0.0023 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34478999999999999999998754
No 429
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.23 E-value=0.0028 Score=48.44 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=21.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455789999999999999999975
No 430
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.22 E-value=0.0023 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
-.++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4578999999999999999975
No 431
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.22 E-value=0.0021 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34578999999999999999998754
No 432
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.21 E-value=0.0026 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.4
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998854
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.21 E-value=0.0025 Score=49.78 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.+.=+++++|++|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456689999999999999999998764
No 434
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.21 E-value=0.0024 Score=51.17 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=22.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
...=-++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344567899999999999999998854
No 435
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.20 E-value=0.0036 Score=47.05 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999877
No 436
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.20 E-value=0.0044 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..+++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
No 437
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.19 E-value=0.003 Score=44.91 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+++++|++||||||++..|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998854
No 438
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.18 E-value=0.0025 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 568999999999999999999764
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.18 E-value=0.0026 Score=51.43 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998754
No 440
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.17 E-value=0.0027 Score=44.52 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 441
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.17 E-value=0.0031 Score=43.60 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030193 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~ 39 (181)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 442
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.15 E-value=0.0023 Score=51.88 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34478999999999999999998754
No 443
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.13 E-value=0.0037 Score=43.40 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
....|+|+|++|+|||++...|...-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45578999999999999999997654
No 444
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.13 E-value=0.0054 Score=46.44 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=20.9
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+|+++|++|+||||+...+.+
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999987754
No 445
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.13 E-value=0.0037 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+++.|++|+|||++++.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999975
No 446
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0049 Score=47.96 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|++.||||+|||++++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34567999999999999999999764
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.12 E-value=0.0028 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.--++|+|++|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 44678999999999999998874
No 448
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.12 E-value=0.0026 Score=51.64 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34578999999999999999998754
No 449
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.11 E-value=0.0059 Score=44.92 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.7
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.....+++.|++|+|||+++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999987754
No 450
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0029 Score=47.26 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=23.3
Q ss_pred ccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
......+++.|+||+|||++++.+...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356778999999999999999999754
No 451
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.08 E-value=0.0059 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..+++.|++|+|||++++.+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998764
No 452
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.07 E-value=0.0029 Score=51.20 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..-.++++|++|+|||||++.+.+-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999998754
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0032 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 454
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.02 E-value=0.0053 Score=46.56 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030193 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.++|.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 455
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.006 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-|++.||||+|||++++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999999763
No 456
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.99 E-value=0.0044 Score=42.36 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030193 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~~~ 40 (181)
++|+|.++||||++...+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999855
No 457
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.0036 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.123 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=.++++|+.|+|||||++.+.+-..
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999988643
No 458
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.96 E-value=0.004 Score=44.14 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=18.6
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.--+++.|++|+|||+|+..+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4457899999999999987775
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.95 E-value=0.0039 Score=48.28 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-|+++|++||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4456889999999999999998754
No 460
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.95 E-value=0.0062 Score=47.54 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=18.0
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
..=|.|+|+.++|||+|+|.++
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 3445599999999999999654
No 461
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.95 E-value=0.0038 Score=46.13 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhh
Q 030193 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~ 38 (181)
..-.++++|++|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35578899999999999999885
No 462
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0067 Score=47.24 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-.--|++.||||+|||++++++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999999764
No 463
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.94 E-value=0.0038 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-.+++.|++|+|||++++.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998764
No 464
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.93 E-value=0.0038 Score=44.29 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=18.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+..-|.+.|++||||||+++.+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567799999999999999999864
No 465
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.93 E-value=0.0042 Score=50.48 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34468999999999999999998754
No 466
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.92 E-value=0.0039 Score=47.18 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..--+.|+|++|+|||||+..+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456789999999999999999764
No 467
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.90 E-value=0.0042 Score=47.26 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=18.1
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030193 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~ 38 (181)
.+ .+|+|+.|+|||||++++.
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 44 4699999999999999986
No 468
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0066 Score=46.73 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.2
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...--|++.||||+|||.+++++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999763
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.88 E-value=0.0046 Score=49.53 Aligned_cols=26 Identities=35% Similarity=0.230 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=.++++|+.|+|||||++.+.+-..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44689999999999999999988653
No 470
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.88 E-value=0.0047 Score=43.16 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 471
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.87 E-value=0.0044 Score=46.04 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
--|+++|++|+||||++..+.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 4578999999999999998854
No 472
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.0041 Score=46.96 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..-.+++.|++|+|||+|++.+.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999998763
No 473
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.86 E-value=0.0047 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
No 474
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.85 E-value=0.0052 Score=41.72 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=22.6
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
....-|++.|++|+||||++..|....
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 345678999999999999999997643
No 475
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.84 E-value=0.0045 Score=45.44 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999865
No 476
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.82 E-value=0.0093 Score=44.26 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999888653
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.82 E-value=0.0046 Score=50.25 Aligned_cols=26 Identities=35% Similarity=0.230 Sum_probs=22.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~~~ 42 (181)
.=.++++|+.|+|||||++.+.+-..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44689999999999999999988643
No 478
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.80 E-value=0.0051 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
-.+++.|++|+|||++++.+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988764
No 479
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.77 E-value=0.0055 Score=45.81 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 480
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.76 E-value=0.0049 Score=46.01 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..|++.|++|+|||++++.+.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999999764
No 481
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.76 E-value=0.01 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030193 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~ 39 (181)
-.+++.|++|+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.75 E-value=0.0061 Score=43.37 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998653
No 483
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.72 E-value=0.0039 Score=55.09 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.6
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
..=+|+++|++|||||||++.+.+-
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3458999999999999999999763
No 484
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.72 E-value=0.007 Score=42.81 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHhhhhc
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
.+..-|.+.|.+||||||+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5677899999999999999998864
No 485
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.71 E-value=0.0091 Score=49.75 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=26.0
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+..-......-++++.|+||+|||++++.+...
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3333344456778999999999999999988654
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0054 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc
Q 030193 19 RILMVGLDAAGKTTILYKLKLGEIV 43 (181)
Q Consensus 19 ~i~v~G~~~~GKSsli~~l~~~~~~ 43 (181)
.++++|+.|+|||||++.+.+-..+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3789999999999999999886543
No 487
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.70 E-value=0.0059 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||+++.++.+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999653
No 488
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.70 E-value=0.0036 Score=45.17 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030193 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
...+++.|++|+|||++++.+.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999999965
No 489
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.68 E-value=0.0041 Score=49.91 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.5
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.....|+++|++|||||||++.|.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 45678999999999999999999764
No 490
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.63 E-value=0.0077 Score=44.84 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-|+|+||+|||||+|...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45789999999999999999653
No 491
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.011 Score=45.82 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.3
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-.--|++.||||+|||++++++.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 34567999999999999999999764
No 492
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.62 E-value=0.0061 Score=42.38 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=16.8
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030193 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKSsli~~l~ 38 (181)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999874
No 493
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.62 E-value=0.011 Score=49.11 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHhhhccccceEEEEcCCCCChHHHHhhhhcC
Q 030193 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.+.........-+++++|++|+|||++++.+...
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3444444456778999999999999999998764
No 494
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.61 E-value=0.0087 Score=44.97 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030193 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998654
No 495
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.55 E-value=0.013 Score=42.24 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.0
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcCC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 41 (181)
.....|++.|++|+|||++++.+....
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 456789999999999999999987643
No 496
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.53 E-value=0.0091 Score=45.40 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.5
Q ss_pred ccceEEEEcCCCCChHHHHhhhhcC
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
....+++.|++|+|||+++..+...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998753
No 497
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.51 E-value=0.014 Score=43.12 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030193 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...+++.|++|+|||+++..+...
T Consensus 46 ~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 46 MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 335999999999999999998764
No 498
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.50 E-value=0.0057 Score=46.23 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
...-.+++.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999998754
No 499
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.011 Score=46.24 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHhhhhcC
Q 030193 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~l~~~ 40 (181)
.-.--|++.||||+|||+|++++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 45668999999999999999999763
No 500
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.44 E-value=0.01 Score=41.68 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCChHHHHhhhhc
Q 030193 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~l~~ 39 (181)
+..-|.+.|++||||||+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999999854
Done!