BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030194
         (181 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DLD|A Chain A, Crystal Structure Of Peptide Deformylase, Xoo1075, From
           Xanthomonas Oryzae Pv. Oryzae Kacc10331
          Length = 171

 Score = 26.9 bits (58), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 124 RYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGR 157
           RY+ F+P+G    + ++   A    H  DH +GR
Sbjct: 116 RYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGR 149


>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
           Baumannii Bound To
           5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
 pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
           Baumannii Bound To
           5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
 pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
           Baumannii Bound To
           2-(4-N-Dodecyl-1,2,
           3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
           Sulfamoyl]adenosine
 pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
           Baumannii Bound To
           2-(4-N-Dodecyl-1,2,
           3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
           Sulfamoyl]adenosine
 pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
           Baumannii Bound To
           6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
           4-B]pyridine-4- Carboxylic Acid.
 pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
           Baumannii Bound To
           6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
           4-B]pyridine-4- Carboxylic Acid.
 pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
           Baumannii Bound To
           6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
           Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
 pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
           Baumannii Bound To
           6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
           Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
 pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
           Baumannii Bound To
           6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
           Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
 pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
           Baumannii Bound To
           6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
           Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
          Length = 544

 Score = 26.6 bits (57), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 79  DKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKH 138
           D +  ++++     M NH+    G   W      T    S T +     F   GG     
Sbjct: 147 DSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTP 206

Query: 139 SKRRRAHEPNHSTDHSLGRHSEVTSLGSSER 169
               R H   +  D+S+   +E+  L S+ R
Sbjct: 207 KLIPRTH---NDYDYSVRASAEICGLNSNTR 234


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.125    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,904,640
Number of Sequences: 62578
Number of extensions: 240970
Number of successful extensions: 386
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 3
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (23.1 bits)