BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030194
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4KF27|MDA2_ARATH Mediator-associated protein 2 OS=Arabidopsis thaliana GN=At5g64680
PE=1 SV=1
Length = 211
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 1 MPDFDGKELSLELRGNGRLGSFEDSS--------GKAYDIVSNDFQEPDEMVFLNYPSE- 51
P+ + L +E +G G F+DS+ G YD+ S F D L PSE
Sbjct: 40 FPEIEENTLKIEPDKDGLFGEFKDSNAGSLHLCLGAKYDLAS--FHSQDAGAELIIPSEE 97
Query: 52 PKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQ 111
IVGKI+RRV+LV YPEP E+ + + +Q V S+ N SS +SS N
Sbjct: 98 SMIVGKITRRVALVRYPEPNELLQKMKARTQQKLV----GSVTN----SSKKSS---NLT 146
Query: 112 STLEHSSYTQSSRYKSFSPEGGEPSKHSKRR 142
+ H S T+SSR KS E K KR+
Sbjct: 147 QSSRHKSGTRSSREKSMFSGFTETPKSPKRK 177
>sp|A5DSB5|SQS1_LODEL Protein SQS1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=SQS1 PE=3
SV=1
Length = 792
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 93 MPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEG--GEPSKHSKRRRAHEPN 148
+PN A G++ RR E ++YT+S RY+ F+ + P + K + ++PN
Sbjct: 60 IPNGEMAEVGRNMGRRRYGKLAEEAAYTESHRYEDFASKTFRNRPIEFIKAKEVYDPN 117
>sp|Q60841|RELN_MOUSE Reelin OS=Mus musculus GN=Reln PE=1 SV=3
Length = 3461
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 39 EPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHV 86
+P E V L+Y + I K+ S V+Y EP+ + PD RQ +
Sbjct: 791 QPGEGVLLHYSYDNGITWKLLEHYSYVNYHEPRIISVELPDDARQFGI 838
>sp|Q03124|RSC9_YEAST Chromatin structure-remodeling complex subunit RSC9
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC9 PE=1 SV=1
Length = 581
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 60 RRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSY 119
R + + P PKE L+ D +QL + ++W R ++ + +
Sbjct: 362 RLIKRLKPPAPKEPPNLSEDLFQQLFKLNEPLR----------STAWLRCCFEPVQEAEF 411
Query: 120 TQSSRYKSFSPEGGEPSKHSKRR 142
TQ S ++S+ + G+P + S R+
Sbjct: 412 TQISLWRSYESKFGQPVRESGRK 434
>sp|Q75B32|TRM6_ASHGO tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51
/ FGSC 9923 / NRRL Y-1056) GN=TRM6 PE=3 SV=1
Length = 459
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 19 LGSFEDSSGKAYDIV-SNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEE-- 75
G E G +V N+ D + F NY E +GK + VSL+ Y EP VEE
Sbjct: 239 FGGHEAQHGGTIVVVHENEHPNLDLLKFSNYSEE--FIGKHVKTVSLLQYFEPPTVEEVE 296
Query: 76 -----LNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSP 130
L+ ++R++ GA + +S R SQ T + + + + P
Sbjct: 297 ASFTPLDDAQLREMKSNKKGAYYRRLKRYNSDLEVIRLASQITYDALIVASTLQLSTLVP 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,285,729
Number of Sequences: 539616
Number of extensions: 3039337
Number of successful extensions: 7010
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 6750
Number of HSP's gapped (non-prelim): 334
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)