Query 030194
Match_columns 181
No_of_seqs 14 out of 16
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 16:05:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lf5_A Cytochrome B5 reductase 25.5 22 0.00074 24.9 0.9 17 26-42 27-43 (88)
2 2ibj_A Cytochrome B5, CYTB5; F 24.7 23 0.00078 24.4 0.9 19 25-43 27-45 (88)
3 1x3x_A Cytochrome B5; hemoprot 23.6 24 0.00082 24.0 0.8 18 25-42 24-41 (82)
4 1cxy_A Cytochrome B5; helix, b 23.4 22 0.00076 24.7 0.6 18 25-42 28-45 (90)
5 3ner_A Cytochrome B5 type B; h 23.2 25 0.00087 24.7 0.9 17 26-42 31-47 (92)
6 1mj4_A Sulfite oxidase; cytoch 21.1 25 0.00086 24.0 0.5 23 25-47 26-49 (82)
7 1cyo_A Cytochrome B5; electron 20.3 28 0.00096 24.4 0.6 18 25-42 25-42 (93)
8 2y9w_C Lectin-like fold protei 20.2 1.5E+02 0.0052 23.3 4.8 52 2-54 85-142 (150)
9 2v8f_A Profilin-2, profilin II 20.1 1.6E+02 0.0054 22.1 4.8 44 27-70 68-118 (140)
10 3dcm_X AdoMet, uncharacterized 18.1 41 0.0014 27.1 1.2 11 61-71 6-16 (192)
No 1
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=25.49 E-value=22 Score=24.91 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=15.2
Q ss_pred CCceeeeeeeccCCCCc
Q 030194 26 SGKAYDIVSNDFQEPDE 42 (181)
Q Consensus 26 sGk~YdlvSfaaQ~pDa 42 (181)
.|++||+-.|..+-|.-
T Consensus 27 ~g~VYDvT~f~~~HPGG 43 (88)
T 3lf5_A 27 RGFVYNVSPYMEYHPGG 43 (88)
T ss_dssp TTEEEECGGGTTTCTTC
T ss_pred CCEEEECccchhhCcCh
Confidence 69999999999988874
No 2
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=24.71 E-value=23 Score=24.36 Aligned_cols=19 Identities=16% Similarity=0.227 Sum_probs=15.8
Q ss_pred CCCceeeeeeeccCCCCce
Q 030194 25 SSGKAYDIVSNDFQEPDEM 43 (181)
Q Consensus 25 SsGk~YdlvSfaaQ~pDat 43 (181)
-.|++|||-.|..+-|.-.
T Consensus 27 i~g~VYDvT~f~~~HPGG~ 45 (88)
T 2ibj_A 27 IHNNVYDVTAFLNEHPGGE 45 (88)
T ss_dssp ETTEEEECGGGTTTCTTCS
T ss_pred ECCEEEECCcchhhCcCHH
Confidence 3589999999999888753
No 3
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=23.63 E-value=24 Score=24.01 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.6
Q ss_pred CCCceeeeeeeccCCCCc
Q 030194 25 SSGKAYDIVSNDFQEPDE 42 (181)
Q Consensus 25 SsGk~YdlvSfaaQ~pDa 42 (181)
-.|++||+-.|..+-|.-
T Consensus 24 i~g~VYDvT~f~~~HPGG 41 (82)
T 1x3x_A 24 YDGEVHDMTSFYKEHPGG 41 (82)
T ss_dssp ETTEEEECGGGGGGCTTG
T ss_pred ECCEEEECCcchhhCcCh
Confidence 468999999999888875
No 4
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=23.40 E-value=22 Score=24.66 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.4
Q ss_pred CCCceeeeeeeccCCCCc
Q 030194 25 SSGKAYDIVSNDFQEPDE 42 (181)
Q Consensus 25 SsGk~YdlvSfaaQ~pDa 42 (181)
-.|++|||-.|..+-|.-
T Consensus 28 i~g~VYDvT~f~~~HPGG 45 (90)
T 1cxy_A 28 IHGKVYDLTPYVPNHPGP 45 (90)
T ss_dssp ETTEEEECTTTGGGCCSS
T ss_pred ECCEEEECccchhhCcCh
Confidence 359999999999988874
No 5
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=23.15 E-value=25 Score=24.73 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.1
Q ss_pred CCceeeeeeeccCCCCc
Q 030194 26 SGKAYDIVSNDFQEPDE 42 (181)
Q Consensus 26 sGk~YdlvSfaaQ~pDa 42 (181)
.|++|||-.|...-|.-
T Consensus 31 ~g~VYDvT~f~~~HPGG 47 (92)
T 3ner_A 31 HGRVYDVTRFLNEHPGG 47 (92)
T ss_dssp TTEEEECGGGTTTCTTC
T ss_pred CCEEEEcccccccCCCH
Confidence 59999999999888874
No 6
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=21.13 E-value=25 Score=23.97 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=18.5
Q ss_pred CCCceeeeeeeccCCCCc-eEEec
Q 030194 25 SSGKAYDIVSNDFQEPDE-MVFLN 47 (181)
Q Consensus 25 SsGk~YdlvSfaaQ~pDa-tVfl~ 47 (181)
-.|++||+-.|...-|.- .+++-
T Consensus 26 i~g~VYDvt~f~~~HPGG~~~il~ 49 (82)
T 1mj4_A 26 LGSEVFDVTEFVDLHPGGPSKLML 49 (82)
T ss_dssp ETTEEEECTTTGGGSTTCHHHHHT
T ss_pred ECCEEEEchHHHHhCCCHhHHHHH
Confidence 458999999999999986 55553
No 7
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=20.29 E-value=28 Score=24.39 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=15.3
Q ss_pred CCCceeeeeeeccCCCCc
Q 030194 25 SSGKAYDIVSNDFQEPDE 42 (181)
Q Consensus 25 SsGk~YdlvSfaaQ~pDa 42 (181)
-.|++|||-.|..+-|.-
T Consensus 25 i~g~VYDvT~f~~~HPGG 42 (93)
T 1cyo_A 25 LHYKVYDLTKFLEEHPGG 42 (93)
T ss_dssp ETTEEEECTTTTTTCTTC
T ss_pred ECCEEEECCCcchhCcCh
Confidence 358999999999988874
No 8
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=20.18 E-value=1.5e+02 Score=23.32 Aligned_cols=52 Identities=27% Similarity=0.448 Sum_probs=37.4
Q ss_pred CCCCCceeEEEecCCCccccc------cCCCCceeeeeeeccCCCCceEEecCCCCCcc
Q 030194 2 PDFDGKELSLELRGNGRLGSF------EDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKI 54 (181)
Q Consensus 2 ~Df~g~elsl~l~~DG~lgsf------e~SsGk~YdlvSfaaQ~pDatVfl~S~se~ki 54 (181)
++|+|++.+..+.-.|+=..| |+--|.++-+---++|.| .||||----|+..
T Consensus 85 sefdgqtckwsieysgngeefwirvpreggggavwtikpassqgp-ttvfldllketdp 142 (150)
T 2y9w_C 85 SEFDGQTCKWSIEYSGNGEEFWIRVPREGGGGAVWTIKPASSQGP-TTVFLDLLKETDP 142 (150)
T ss_dssp SSCCTTTSCBEEEECSSTTEEEEECCCTTSCCCEEEEEESSSSCC-EEEEEECCCTTCG
T ss_pred eecCCceEEEEEEEcCCCeEEEEECcccCCCeeEEEecccccCCC-eeehhhhhhccCc
Confidence 588888765555444544444 667788999998888888 5899987666643
No 9
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=20.11 E-value=1.6e+02 Score=22.07 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=35.7
Q ss_pred CceeeeeeeccC-CCCce--EEecCCCCC----cccceeeeeEEeeecCCc
Q 030194 27 GKAYDIVSNDFQ-EPDEM--VFLNYPSEP----KIVGKISRRVSLVHYPEP 70 (181)
Q Consensus 27 Gk~YdlvSfaaQ-~pDat--Vfl~S~se~----kivGKISRRVslV~YPeP 70 (181)
|++|=++..... ++|.+ |+-=.+.+- -+|.|-...|-+++|+||
T Consensus 68 G~Ky~~ir~~l~~d~~~~~di~~kk~~~G~~~~v~i~KT~~alvI~~y~e~ 118 (140)
T 2v8f_A 68 AKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEG 118 (140)
T ss_dssp TEEEEEEEEETTSTTTCEEEEEECCCSSSCCCEEEEEECSSEEEEEEECTT
T ss_pred CEEEEEEecccccCCCceEEEEEecCCCCCceeEEEEEcCCEEEEEEcCCC
Confidence 788977765433 67888 887777776 889999999999999998
No 10
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=18.08 E-value=41 Score=27.10 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=8.5
Q ss_pred eEEeeecCCch
Q 030194 61 RVSLVHYPEPK 71 (181)
Q Consensus 61 RVslV~YPeP~ 71 (181)
.|+|||||--+
T Consensus 6 ~v~LvhyPv~~ 16 (192)
T 3dcm_X 6 YVALIHYPIKG 16 (192)
T ss_dssp EEEEECSSEEC
T ss_pred EEEEecccccC
Confidence 58999999644
Done!