BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030195
         (181 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ME0|A Chain A, Structure Of The E. Coli Chaperone Papd In Complex With
           The Pilin Domain Of The Papgii Adhesin
          Length = 218

 Score = 27.3 bits (59), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 80  RPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNE 124
           R S   F L + P   +  N L      K+K+FY P A K  PNE
Sbjct: 82  RESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNE 126


>pdb|1N0L|A Chain A, Crystal Structure Of The Papd Chaperone (C-Terminally 6x
           Histidine-Tagged) Bound To The Pape Pilus Subunit (N-
           Terminal-Deleted) From Uropathogenic E. Coli
 pdb|1N0L|C Chain C, Crystal Structure Of The Papd Chaperone (C-Terminally 6x
           Histidine-Tagged) Bound To The Pape Pilus Subunit (N-
           Terminal-Deleted) From Uropathogenic E. Coli
          Length = 224

 Score = 27.3 bits (59), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 80  RPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNE 124
           R S   F L + P   +  N L      K+K+FY P A K  PNE
Sbjct: 82  RESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNE 126


>pdb|2J7L|A Chain A, E.Coli P Pilus Chaperone Papd In Complex With A Pilus
           Biogenesis Inhibitor, Pilicide 2c
 pdb|3DPA|A Chain A, Crystal Structure Of Chaperone Protein Papd Reveals An
           Immunoglobulin Fold
          Length = 218

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 80  RPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNE 124
           R S   F L + P   +  N L      K+K+FY P A K  PNE
Sbjct: 82  RESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNE 126


>pdb|1QPP|A Chain A, Crystal Structures Of Self Capping Papd Chaperone
           Homodimers
 pdb|1QPP|B Chain B, Crystal Structures Of Self Capping Papd Chaperone
           Homodimers
          Length = 218

 Score = 26.9 bits (58), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 80  RPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNE 124
           R S   F L + P   +  N L      K+K+FY P A K  PNE
Sbjct: 82  RESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNE 126


>pdb|2WMP|A Chain A, Structure Of The E. Coli Chaperone Papd In Complex With
           The Pilin Domain Of The Papgii Adhesin
          Length = 224

 Score = 26.9 bits (58), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 80  RPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNE 124
           R S   F L + P   +  N L      K+K+FY P A K  PNE
Sbjct: 82  RESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNE 126


>pdb|1PDK|A Chain A, Papd-Papk Chaperone-Pilus Subunit Complex From E.Coli P
           Pilus
 pdb|2J2Z|A Chain A, X-Ray Structure Of The Chaperone Papd In Complex With The
           Pilus Terminator Subunit Paph At 2.3 Angstrom Resolution
 pdb|2UY6|A Chain A, Crystal Structure Of The P Pilus Rod Subunit Papa
 pdb|2UY7|A Chain A, Crystal Structure Of The P Pilus Rod Subunit Papa
 pdb|2UY7|C Chain C, Crystal Structure Of The P Pilus Rod Subunit Papa
 pdb|2UY7|E Chain E, Crystal Structure Of The P Pilus Rod Subunit Papa
 pdb|2UY7|G Chain G, Crystal Structure Of The P Pilus Rod Subunit Papa
 pdb|2W07|A Chain A, Structural Determinants Of Polymerization Reactivity Of
           The P Pilus Adaptor Subunit Papf
 pdb|2XG4|A Chain A, E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph Bound
           To Pilus Biogenesis Inhibitor, Pilicide 2c
 pdb|2XG5|A Chain A, E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph Bound
           To Pilus Biogenesis Inhibitor, Pilicide 5d
          Length = 218

 Score = 26.9 bits (58), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 80  RPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNE 124
           R S   F L + P   +  N L      K+K+FY P A K  PNE
Sbjct: 82  RESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNE 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,194,337
Number of Sequences: 62578
Number of extensions: 210035
Number of successful extensions: 262
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 10
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)