BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030195
         (181 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0AJI9|THIC_NITEC Phosphomethylpyrimidine synthase OS=Nitrosomonas eutropha (strain
           C91) GN=thiC PE=3 SV=1
          Length = 632

 Score = 30.4 bits (67), Expect = 6.9,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 9/140 (6%)

Query: 3   ATAGSIFAASSQFASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGKVT 62
           A   +I  A+     A   +  RN    +++ +G+S  G+S+     K    +R  G   
Sbjct: 206 ARGRAIIPANINHPEAEPMIIGRNFLVKINANIGNSALGSSIQDEVEKMTWAIRWGGDTV 265

Query: 63  AAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLP 122
             ++T  N +E  E   R S     +G  P+Y      L  + G+  ++ +  +   L+ 
Sbjct: 266 MDLSTGKNIHETREWIIRNS--PVPIGTVPIY----QALEKVDGKAEELTWEIFRDTLIE 319

Query: 123 NEDFGIGF---NGGFNQPFM 139
             + G+ +   + G   PF+
Sbjct: 320 QAEQGVDYFTIHAGVRLPFV 339


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,574,368
Number of Sequences: 539616
Number of extensions: 2929229
Number of successful extensions: 6513
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6478
Number of HSP's gapped (non-prelim): 48
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)