Query 030195
Match_columns 181
No_of_seqs 18 out of 20
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 10:01:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03423 CBM_25: Carbohydrate 95.3 0.019 4.1E-07 41.2 3.1 66 106-176 1-66 (87)
2 PLN02316 synthase/transferase 93.9 0.11 2.4E-06 52.3 5.8 71 99-175 483-555 (1036)
3 PLN02316 synthase/transferase 89.2 0.96 2.1E-05 45.8 6.4 75 99-177 321-395 (1036)
4 PF06200 tify: tify domain; I 63.2 6 0.00013 25.6 1.8 14 102-115 1-14 (36)
5 PF06830 Root_cap: Root cap; 59.1 4.6 9.9E-05 29.0 0.8 22 126-148 23-44 (57)
6 KOG0549 FKBP-type peptidyl-pro 53.7 16 0.00034 31.3 3.3 65 102-178 84-171 (188)
7 PRK11385 putativi pili assembl 48.6 17 0.00037 30.7 2.8 36 89-124 110-155 (236)
8 PF04411 DUF524: Protein of un 42.4 93 0.002 23.3 5.6 48 105-177 54-102 (154)
9 PF10102 DUF2341: Domain of un 41.4 35 0.00075 25.0 3.1 46 80-126 16-65 (89)
10 PF01630 Glyco_hydro_56: Hyalu 40.6 19 0.00041 32.6 1.9 46 88-136 31-76 (337)
11 PF14524 Wzt_C: Wzt C-terminal 39.9 36 0.00078 23.7 2.9 76 92-169 17-95 (142)
12 PRK15195 fimbrial chaperone pr 37.3 33 0.00071 28.7 2.7 34 90-123 103-150 (229)
13 PRK15188 fimbrial chaperone pr 35.7 38 0.00082 28.6 2.9 37 89-125 104-153 (228)
14 cd08389 C2A_Synaptotagmin-14_1 33.6 1.1E+02 0.0024 22.2 4.7 65 108-179 6-90 (124)
15 PF05725 FNIP: FNIP Repeat; I 33.3 35 0.00076 21.4 1.8 25 121-145 10-34 (44)
16 PF08648 DUF1777: Protein of u 32.0 19 0.00042 28.1 0.6 7 132-138 170-176 (180)
17 PF12158 DUF3592: Protein of u 31.3 32 0.00069 24.6 1.6 13 105-117 94-106 (148)
18 PRK15285 putative fimbrial cha 29.6 52 0.0011 28.2 2.8 36 89-124 105-150 (250)
19 PRK15192 fimbrial chaperone Bc 28.2 54 0.0012 27.8 2.6 36 89-124 105-150 (234)
20 PRK09926 putative chaperone pr 28.0 61 0.0013 27.2 2.9 34 89-122 107-155 (246)
21 PRK15253 putative fimbrial ass 26.8 53 0.0012 27.9 2.4 36 89-124 114-162 (242)
22 PRK15218 fimbrial chaperone pr 26.3 66 0.0014 27.0 2.8 35 90-124 100-147 (226)
23 PF08366 LLGL: LLGL2; InterPr 24.7 86 0.0019 24.2 3.0 31 138-176 32-62 (105)
24 PF01060 DUF290: Transthyretin 24.2 32 0.0007 24.0 0.5 9 138-146 4-12 (80)
25 PRK15295 fimbrial assembly cha 22.3 77 0.0017 26.4 2.5 32 89-120 97-140 (226)
26 PRK15233 putative fimbrial cha 21.6 66 0.0014 27.7 2.0 35 90-124 117-171 (246)
27 PRK15246 fimbrial assembly cha 21.0 96 0.0021 26.1 2.8 35 90-124 93-141 (233)
28 PRK15254 fimbrial chaperone pr 20.6 1.1E+02 0.0024 25.9 3.2 35 89-123 96-140 (239)
29 COG3121 FimC P pilus assembly 20.2 1.1E+02 0.0024 25.5 3.0 36 89-124 105-153 (235)
30 PRK15249 fimbrial chaperone pr 20.0 99 0.0022 26.2 2.7 30 89-118 111-154 (253)
No 1
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.30 E-value=0.019 Score=41.23 Aligned_cols=66 Identities=20% Similarity=0.369 Sum_probs=30.5
Q ss_pred CCceEEEEccccCCCCCCcceeeeecCCCCCceecCCchhhhhhhhhCCCCCCceEEEEeecCceeeEEEe
Q 030195 106 GEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTD 176 (181)
Q Consensus 106 Ge~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGePR~M~~k~RGkad~PiYtI~I~vPkHa~~L~f~ 176 (181)
|+.++|||||..+.|.-.. -|=+.+|||. -. ....-.|.+... .....-+...|.||+.|..|-|-
T Consensus 1 G~~vtVyYn~~~~~l~g~~--~v~~~~G~n~-W~-~~~~~~m~~~~~-~~~~~~~~~tv~vP~~a~~~dfv 66 (87)
T PF03423_consen 1 GETVTVYYNPSLTALSGAP--NVHLHGGFNR-WT-HVPGFGMTKMCV-PDEGGWWKATVDVPEDAYVMDFV 66 (87)
T ss_dssp -SEEEEEE---E-SSS-S---EEEEEETTS--B--SSS-EE-EEESS----TTEEEEEEE--TTTSEEEEE
T ss_pred CCEEEEEEEeCCCCCCCCC--cEEEEecCCC-CC-cCCCCCcceeee-eecCCEEEEEEEEcCCceEEEEE
Confidence 7899999999877775222 2344444442 11 111123333221 11167899999999998766653
No 2
>PLN02316 synthase/transferase
Probab=93.91 E-value=0.11 Score=52.27 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=55.3
Q ss_pred CCCCCCCCCceEEEEccccCCCCCCcceeeeecCCCCCceecCC--chhhhhhhhhCCCCCCceEEEEeecCceeeEEE
Q 030195 99 NGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGG--EPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFT 175 (181)
Q Consensus 99 nGlpP~sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGG--ePR~M~~k~RGkad~PiYtI~I~vPkHa~~L~f 175 (181)
.=+-|.+|+.++|||||.-+-|.-..+ |=|-||||.=.---| .|-.|.+.+-| .-+.-.+.||.-|..+-|
T Consensus 483 eP~~~~aG~~v~v~Yn~~~t~l~~~~e--v~~~g~~NrWth~~~~~~~~~m~~~~~g----~~~~a~v~vP~da~~mdf 555 (1036)
T PLN02316 483 EPLEVQAGTTVTVLYNPANTVLNGKPE--VWFRGSFNRWTHRLGPLPPQKMVPADNG----SHLKATVKVPLDAYMMDF 555 (1036)
T ss_pred cCCCCCCCCEEEEEECCCCCcCCCCce--EEEEccccCcCCCCCCCCceeeeecCCC----ceEEEEEEccccceEEEE
Confidence 345689999999999999888875544 779999997555555 58889888776 577889999998765543
No 3
>PLN02316 synthase/transferase
Probab=89.22 E-value=0.96 Score=45.85 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=52.4
Q ss_pred CCCCCCCCCceEEEEccccCCCCCCcceeeeecCCCCCceecCCchhhhhhhhhCCCCCCceEEEEeecCceeeEEEee
Q 030195 99 NGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTDL 177 (181)
Q Consensus 99 nGlpP~sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGePR~M~~k~RGkad~PiYtI~I~vPkHa~~L~f~~ 177 (181)
....|-+|+.++|||||+-+.|.-.+ -|=+.||||.=..-.+.+-.|.+-+.+.-| .+.-.|.||+-|..|-|-+
T Consensus 321 ~P~~~~aG~~v~lyYN~~~~~L~~~~--~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~--ww~a~v~vP~~A~~mDfVF 395 (1036)
T PLN02316 321 EPSEFKAGDTVKLYYNRSSGPLAHST--EIWIHGGYNNWIDGLSIVEKLVKSEEKDGD--WWYAEVVVPERALVLDWVF 395 (1036)
T ss_pred cCCCcCCCCEEEEEECCCCCCCCCCC--cEEEEEeEcCCCCCCcccceeecccCCCCC--EEEEEEecCCCceEEEEEE
Confidence 35678999999999999999986443 467788888644333322234443433333 8899999999998887754
No 4
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=63.24 E-value=6 Score=25.62 Aligned_cols=14 Identities=36% Similarity=0.664 Sum_probs=11.2
Q ss_pred CCCCCCceEEEEcc
Q 030195 102 PPMSGEKLKIFYNP 115 (181)
Q Consensus 102 pP~sGe~L~lfyNp 115 (181)
|+....+|+||||=
T Consensus 1 ~~~~~~qLTIfY~G 14 (36)
T PF06200_consen 1 PSPETAQLTIFYGG 14 (36)
T ss_pred CCCCCCcEEEEECC
Confidence 45677899999984
No 5
>PF06830 Root_cap: Root cap; InterPro: IPR009646 The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die [].This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process.
Probab=59.11 E-value=4.6 Score=28.96 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=17.0
Q ss_pred eeeeecCCCCCceecCCchhhhh
Q 030195 126 FGIGFNGGFNQPFMCGGEPRAML 148 (181)
Q Consensus 126 fGiaFNGGFNQPIMCGGePR~M~ 148 (181)
|=--.+.|-+.||| |||++..+
T Consensus 23 yvn~vk~g~~MPvm-GG~~~y~t 44 (57)
T PF06830_consen 23 YVNPVKVGVAMPVM-GGEDKYRT 44 (57)
T ss_pred cccccccCCCCccc-cCCcccee
Confidence 33446788999999 99998654
No 6
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.65 E-value=16 Score=31.30 Aligned_cols=65 Identities=26% Similarity=0.471 Sum_probs=46.8
Q ss_pred CCCCCCceEEEEccccCCCCCCcceeeeecCC--------CCCce---------ecCCchhh------hhhhhhCCCCCC
Q 030195 102 PPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGG--------FNQPF---------MCGGEPRA------MLRKNRGQNDSP 158 (181)
Q Consensus 102 pP~sGe~L~lfyNp~as~l~PNe~fGiaFNGG--------FNQPI---------MCGGePR~------M~~k~RGkad~P 158 (181)
.-..|+.|+.-|+= +|.-+..|--.|+=| -+|=| ||=||=|. |...+||.. |
T Consensus 84 kak~GD~l~~HY~g---~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~--~ 158 (188)
T KOG0549|consen 84 KAKKGDTLHVHYTG---SLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAP--P 158 (188)
T ss_pred cccCCCEEEEEEEE---EecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCCC--C
Confidence 34579999999986 777787776666543 22323 99999775 567788873 2
Q ss_pred ceEEEEeecCceeeEEEeee
Q 030195 159 FYTIQICVPKHGMYYFTDLY 178 (181)
Q Consensus 159 iYtI~I~vPkHa~~L~f~~~ 178 (181)
+||--| .|+||+=
T Consensus 159 ------~IP~~A-~LiFdiE 171 (188)
T KOG0549|consen 159 ------KIPGDA-VLIFDIE 171 (188)
T ss_pred ------CCCCCe-eEEEEEE
Confidence 378888 8999973
No 7
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=48.58 E-value=17 Score=30.67 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=28.2
Q ss_pred CCcceEEEecCCCCCCCCC----------ceEEEEccccCCCCCCc
Q 030195 89 GKAPVYWKTMNGLPPMSGE----------KLKIFYNPYAKKLLPNE 124 (181)
Q Consensus 89 G~apVyWkt~nGlpP~sGe----------~L~lfyNp~as~l~PNe 124 (181)
-|-.+||=.-.++||...+ ++||||.|..-+..|++
T Consensus 110 DRESlf~lnv~~IPp~~~~~n~L~iair~riKLFyRP~~L~~~~~~ 155 (236)
T PRK11385 110 DRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLE 155 (236)
T ss_pred CceEEEEEEEEecCCCcCCCceEEEEEEeeEEEEEcccccCCChhh
Confidence 3447999999999997532 38999999987766665
No 8
>PF04411 DUF524: Protein of unknown function (DUF524); InterPro: IPR007505 This domain has been identified as a member of the PD-(D/E)XK nuclease superfamily through transitive meta profile searches []. The domain has two additional beta-strands inserted to the core fold after the first core alpha-helix. It has been speculated that it could function as s methylation-dependent restriction [].
Probab=42.41 E-value=93 Score=23.27 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCCceEEEEccccCCCCCCcceeeeecCCCCCceecCCchhhhhhhhhCCCCCCceEEEEeecCce-eeEEEee
Q 030195 105 SGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHG-MYYFTDL 177 (181)
Q Consensus 105 sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGePR~M~~k~RGkad~PiYtI~I~vPkHa-~~L~f~~ 177 (181)
-|+.+.|+|||.-..-..+. -.-...-.|-+.|.|.-+.+. ..++||-
T Consensus 54 ~~~~i~l~Yn~~~~~~~~~~-------------------------~s~s~~~rPDi~L~i~~~~~~~~~iifDA 102 (154)
T PF04411_consen 54 DGERIELYYNPKFPRKSSKT-------------------------YSYSVPQRPDIVLEIYKKGGYGGSIIFDA 102 (154)
T ss_pred CCcEEEEEECCccCCCCCcC-------------------------ccCccCCCCCEEEEEEECCCccEEEEEEe
Confidence 46788888888654332222 122234468999999999887 8889984
No 9
>PF10102 DUF2341: Domain of unknown function (DUF2341); InterPro: IPR018765 This domain of unknown function is found in various bacterial proteins, including MotA/TolQ/ExbB proton channels and other transport proteins.
Probab=41.38 E-value=35 Score=25.02 Aligned_cols=46 Identities=20% Similarity=0.518 Sum_probs=32.6
Q ss_pred CCchhhh-c-cCCcceEEEecCCCCCCCCCceEEEE-ccccCCCC-CCcce
Q 030195 80 RPSWAMF-E-LGKAPVYWKTMNGLPPMSGEKLKIFY-NPYAKKLL-PNEDF 126 (181)
Q Consensus 80 lpsWa~f-E-lG~apVyWkt~nGlpP~sGe~L~lfy-Np~as~l~-PNe~f 126 (181)
||-|-+. . .+.-.+.|--.+-+|+ ....+.|+| ||.|...- |...|
T Consensus 16 L~ywIE~wd~~~~~A~iWVkvp~i~~-~~~~i~lyyGn~~a~~~sn~~~vF 65 (89)
T PF10102_consen 16 LPYWIESWDPTNEQALIWVKVPSIPA-GSTTIYLYYGNPSATSASNGDAVF 65 (89)
T ss_pred eEEEEEECCCCCCeEEEEEECCCCCC-CCcEEEEEECCCCCccCCCcccEE
Confidence 7777665 2 3445788888888888 888999999 78776653 33443
No 10
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=40.58 E-value=19 Score=32.65 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=24.7
Q ss_pred cCCcceEEEecCCCCCCCCCceEEEEccccCCCCCCcceeeeecCCCCC
Q 030195 88 LGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQ 136 (181)
Q Consensus 88 lG~apVyWkt~nGlpP~sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQ 136 (181)
|...-+-....+. -.||.++|||.+.--.--==++-|..+|||.=|
T Consensus 31 L~~f~Iv~N~~~~---f~G~~itIfY~~~lG~yP~~~~~~~~~NGGlPQ 76 (337)
T PF01630_consen 31 LSAFGIVQNPNQT---FRGQNITIFYEPRLGLYPYYDEQGKPVNGGLPQ 76 (337)
T ss_dssp HCCCTEB--GGG----SSSSSEEEEESTSSST--EEEETSEEETTSSGG
T ss_pred chhcCCeeCcccc---ccCCeEEEEeCCCCCCcceECCCCCeecCCCCC
Confidence 3444444433333 369999999998332211112334888988765
No 11
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=39.93 E-value=36 Score=23.73 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=46.4
Q ss_pred ceEEEecCCCCC---CCCCceEEEEccccCCCCCCcceeeeecCCCCCceecCCchhhhhhhhhCCCCCCceEEEEeecC
Q 030195 92 PVYWKTMNGLPP---MSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPK 168 (181)
Q Consensus 92 pVyWkt~nGlpP---~sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGePR~M~~k~RGkad~PiYtI~I~vPk 168 (181)
-|.....+|.+- .+||.++|-+.=.+.+-.++-.+|+.+-.-..|+|+.--. ..+. ..=.....=.|++++.+|+
T Consensus 17 ~v~i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~t-~~~~-~~~~~~~~g~~~~~~~i~~ 94 (142)
T PF14524_consen 17 SVRILDSDGEPTSSFESGEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTNT-YDSG-FPIPLSEGGTYEVTFTIPK 94 (142)
T ss_dssp EEEEEETTEES-SSEETTSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEEH-HHHT---EEE-TT-EEEEEEEEE-
T ss_pred EEEEEeCCCCEeeEEeCCCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEECc-cccC-ccccccCCCEEEEEEEEcC
Confidence 356667777776 3799999999888888889999999999888888875221 1111 1111111446777777777
Q ss_pred c
Q 030195 169 H 169 (181)
Q Consensus 169 H 169 (181)
+
T Consensus 95 ~ 95 (142)
T PF14524_consen 95 P 95 (142)
T ss_dssp -
T ss_pred c
Confidence 6
No 12
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=37.31 E-value=33 Score=28.70 Aligned_cols=34 Identities=21% Similarity=0.709 Sum_probs=25.2
Q ss_pred CcceEEEecCCCCCCCCC--------------ceEEEEccccCCCCCC
Q 030195 90 KAPVYWKTMNGLPPMSGE--------------KLKIFYNPYAKKLLPN 123 (181)
Q Consensus 90 ~apVyWkt~nGlpP~sGe--------------~L~lfyNp~as~l~PN 123 (181)
+-.+||=.-..+||...+ .+||||.|..-+-.|+
T Consensus 103 rESlf~Lnv~eIP~~~~~~~~~~n~l~iair~~iKlFyRP~~l~~~~~ 150 (229)
T PRK15195 103 RESLFWMNVKAIPSVDKNALEGRNVLQLAILSRIKLFVRPINLQELPE 150 (229)
T ss_pred eeEEEEEEeeecCCCCcccccccceEEEEEEeEEEEEEcccccCCChh
Confidence 446999999999995321 3899999997654443
No 13
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=35.70 E-value=38 Score=28.64 Aligned_cols=37 Identities=16% Similarity=0.421 Sum_probs=28.3
Q ss_pred CCcceEEEecCCCCCCCCC-------------ceEEEEccccCCCCCCcc
Q 030195 89 GKAPVYWKTMNGLPPMSGE-------------KLKIFYNPYAKKLLPNED 125 (181)
Q Consensus 89 G~apVyWkt~nGlpP~sGe-------------~L~lfyNp~as~l~PNe~ 125 (181)
-|-.+||=.-.++||..-. .+||||-|..-+..+++.
T Consensus 104 DRESlf~lnv~~IP~~~~~~~~~n~l~ia~r~~IKLFyRP~~l~~~~~~a 153 (228)
T PRK15188 104 DRESVFYLNSKAIPSVDKNKLTGNSLQIATQSVIKLFIRPKNLAEAPAHA 153 (228)
T ss_pred CceEEEEEEEEecCCCCccccccceEEEEEeeeEEEEECCccCCCChhhh
Confidence 3447999999999996421 389999999877766654
No 14
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=33.61 E-value=1.1e+02 Score=22.22 Aligned_cols=65 Identities=28% Similarity=0.462 Sum_probs=37.2
Q ss_pred ceEEEEccccCCCC---------CCcceeeeecCCCCCce----e-cCCchhhhhhhhhCCCCCCceE--EEEe-ecC--
Q 030195 108 KLKIFYNPYAKKLL---------PNEDFGIGFNGGFNQPF----M-CGGEPRAMLRKNRGQNDSPFYT--IQIC-VPK-- 168 (181)
Q Consensus 108 ~L~lfyNp~as~l~---------PNe~fGiaFNGGFNQPI----M-CGGePR~M~~k~RGkad~PiYt--I~I~-vPk-- 168 (181)
.+.|.||+...+|. |..+ .+|.+.|. + .+...+.-++-.++ ..|+|- ..+. ++.
T Consensus 6 ~~sl~Y~~~~~~L~V~Vi~a~nL~~~~-----~~~~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 6 DVAFEYDPSARKLTVTVIRAQDIPTKD-----RGGASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred EEEEEECCCCCEEEEEEEEecCCCchh-----cCCCCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHH
Confidence 36788998765543 3333 25667772 2 23345556665555 688874 4443 333
Q ss_pred -ceeeEEEeeec
Q 030195 169 -HGMYYFTDLYS 179 (181)
Q Consensus 169 -Ha~~L~f~~~~ 179 (181)
+..+|.|.++.
T Consensus 79 l~~~~L~~~V~~ 90 (124)
T cd08389 79 LNNMALRFRLYG 90 (124)
T ss_pred hccCEEEEEEEE
Confidence 34467777764
No 15
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=33.28 E-value=35 Score=21.39 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=18.0
Q ss_pred CCCcceeeeecCCCCCceecCCchh
Q 030195 121 LPNEDFGIGFNGGFNQPFMCGGEPR 145 (181)
Q Consensus 121 ~PNe~fGiaFNGGFNQPIMCGGePR 145 (181)
.|+..=-+-|+..|||||..|=-|.
T Consensus 10 iP~~l~~L~~g~~fn~~i~~~~lP~ 34 (44)
T PF05725_consen 10 IPSSLKSLIFGSSFNQPIEPGSLPN 34 (44)
T ss_pred eCCCCeEEEECCccCccCCCCccCC
Confidence 3555556788999999998765443
No 16
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=32.00 E-value=19 Score=28.06 Aligned_cols=7 Identities=71% Similarity=1.668 Sum_probs=6.4
Q ss_pred CCCCCce
Q 030195 132 GGFNQPF 138 (181)
Q Consensus 132 GGFNQPI 138 (181)
||||-|+
T Consensus 170 GGFNRpL 176 (180)
T PF08648_consen 170 GGFNRPL 176 (180)
T ss_pred cccCCCC
Confidence 9999996
No 17
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=31.28 E-value=32 Score=24.62 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=12.0
Q ss_pred CCCceEEEEcccc
Q 030195 105 SGEKLKIFYNPYA 117 (181)
Q Consensus 105 sGe~L~lfyNp~a 117 (181)
.|+.++++|||.-
T Consensus 94 ~G~~V~V~Y~P~~ 106 (148)
T PF12158_consen 94 IGDTVTVYYNPNN 106 (148)
T ss_pred CcCEEEEEECCcC
Confidence 8999999999984
No 18
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=29.64 E-value=52 Score=28.19 Aligned_cols=36 Identities=22% Similarity=0.617 Sum_probs=27.3
Q ss_pred CCcceEEEecCCCCCCCCC----------ceEEEEccccCCCCCCc
Q 030195 89 GKAPVYWKTMNGLPPMSGE----------KLKIFYNPYAKKLLPNE 124 (181)
Q Consensus 89 G~apVyWkt~nGlpP~sGe----------~L~lfyNp~as~l~PNe 124 (181)
-|-.|||=..-+.||...+ ++||||-|++-+..+++
T Consensus 105 DRESlfwlnv~~IPp~~~~~n~L~iairtrIKLfYRP~~L~~~~~~ 150 (250)
T PRK15285 105 DRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQ 150 (250)
T ss_pred CceEEEEEEEEEcCCCCCCCcEEEEEeeeeeeEEECcccccCChhh
Confidence 3457999999999997532 48999999986555543
No 19
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=28.24 E-value=54 Score=27.81 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCcceEEEecCCCCCCCC-C---------ceEEEEccccCCCCCCc
Q 030195 89 GKAPVYWKTMNGLPPMSG-E---------KLKIFYNPYAKKLLPNE 124 (181)
Q Consensus 89 G~apVyWkt~nGlpP~sG-e---------~L~lfyNp~as~l~PNe 124 (181)
-|-.+||=.-..+||... + ++||||-|..-+-.+++
T Consensus 105 DRESlf~lnv~~IPp~~~~~n~l~iair~riKlFYRP~~L~~~~~~ 150 (234)
T PRK15192 105 DRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEGLAGNPQQ 150 (234)
T ss_pred cceEEEEEEEEecCCCCCCCcEEEEEEEeeeeEEEccccccCChhh
Confidence 344799999999999543 2 38999999987655543
No 20
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=28.04 E-value=61 Score=27.18 Aligned_cols=34 Identities=29% Similarity=0.705 Sum_probs=25.6
Q ss_pred CCcceEEEecCCCCCCCC------C---------ceEEEEccccCCCCC
Q 030195 89 GKAPVYWKTMNGLPPMSG------E---------KLKIFYNPYAKKLLP 122 (181)
Q Consensus 89 G~apVyWkt~nGlpP~sG------e---------~L~lfyNp~as~l~P 122 (181)
.+-.+||=.-..+||..- + .+||||.|..-+..+
T Consensus 107 DrESlf~lnv~eIP~~~~~~~~~~~n~l~iair~~IKLFyRP~~l~~~~ 155 (246)
T PRK09926 107 DRESVFWFNVLEVPPKPDAEKVANQSLLQLAFRTRIKLFYRPDGLKGNP 155 (246)
T ss_pred CceEEEEEEeeecCCCCccccccccceEEEeeeeeEEEEEcCccCCCCh
Confidence 455799999999999631 1 389999999865544
No 21
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=26.76 E-value=53 Score=27.92 Aligned_cols=36 Identities=19% Similarity=0.571 Sum_probs=27.1
Q ss_pred CCcceEEEecCCCCCCC----CC---------ceEEEEccccCCCCCCc
Q 030195 89 GKAPVYWKTMNGLPPMS----GE---------KLKIFYNPYAKKLLPNE 124 (181)
Q Consensus 89 G~apVyWkt~nGlpP~s----Ge---------~L~lfyNp~as~l~PNe 124 (181)
-|-.|||=.-.+.||.. ++ ++||||-|+.=+..+++
T Consensus 114 DRESlfwlnv~~IPp~~~~~~~~n~l~iairtriKLFYRP~~L~~~~~~ 162 (242)
T PRK15253 114 NKESLFYLNVLDIPPNSQENAGKNVLKFAMQNRIKLIWRPSRIAAVTKD 162 (242)
T ss_pred ceeEEEEEEEEEcCCCCCCcCcCcEEEEEeeeEEEEEEcchhcccchhh
Confidence 34579999999999963 22 38999999986555554
No 22
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=26.32 E-value=66 Score=27.05 Aligned_cols=35 Identities=17% Similarity=0.531 Sum_probs=26.3
Q ss_pred CcceEEEecCCCCCCCC----C---------ceEEEEccccCCCCCCc
Q 030195 90 KAPVYWKTMNGLPPMSG----E---------KLKIFYNPYAKKLLPNE 124 (181)
Q Consensus 90 ~apVyWkt~nGlpP~sG----e---------~L~lfyNp~as~l~PNe 124 (181)
|-.|||=...++||... + ++||||-|+.-+..+++
T Consensus 100 RESlfwlnv~~IPp~~~~~~~~n~L~iairtrIKLfYRP~~L~~~~~~ 147 (226)
T PRK15218 100 RESLFYLNVLDIPPNSDENKDKNIIKFALQNRIKLIYRPPGVQKVDKA 147 (226)
T ss_pred eeEEEEEEEEEcCCCCCCcCcCcEEEEEeeeEEEEEEcccccccChhh
Confidence 44799999999999642 2 38999999976554543
No 23
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=24.68 E-value=86 Score=24.21 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=20.9
Q ss_pred eecCCchhhhhhhhhCCCCCCceEEEEeecCceeeEEEe
Q 030195 138 FMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHGMYYFTD 176 (181)
Q Consensus 138 IMCGGePR~M~~k~RGkad~PiYtI~I~vPkHa~~L~f~ 176 (181)
|.+||-||. + .-..++|.|---++-+.|.|+
T Consensus 32 iFsGGmp~~-------~-ygdr~~vTV~~g~~~~~ldf~ 62 (105)
T PF08366_consen 32 IFSGGMPRA-------S-YGDRHCVTVMQGKTHVVLDFT 62 (105)
T ss_pred EEeCCcccc-------c-cCCCceEEEEeCCEEEEEEcC
Confidence 347888883 1 223467777778888888775
No 24
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=24.21 E-value=32 Score=23.95 Aligned_cols=9 Identities=56% Similarity=1.435 Sum_probs=7.4
Q ss_pred eecCCchhh
Q 030195 138 FMCGGEPRA 146 (181)
Q Consensus 138 IMCGGePR~ 146 (181)
+||||+|-.
T Consensus 4 L~C~~~P~~ 12 (80)
T PF01060_consen 4 LMCGGKPAK 12 (80)
T ss_pred EEeCCccCC
Confidence 699999954
No 25
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=22.30 E-value=77 Score=26.39 Aligned_cols=32 Identities=25% Similarity=0.742 Sum_probs=24.7
Q ss_pred CCcceEEEecCCCCCCCC---C---------ceEEEEccccCCC
Q 030195 89 GKAPVYWKTMNGLPPMSG---E---------KLKIFYNPYAKKL 120 (181)
Q Consensus 89 G~apVyWkt~nGlpP~sG---e---------~L~lfyNp~as~l 120 (181)
.+-.+||=...++||... + ++||||-|..-+.
T Consensus 97 DrEslf~lnv~~IP~~~~~~~~n~l~iair~rIKLFyRP~~L~~ 140 (226)
T PRK15295 97 DRESMYWLNIKGIPSIDDNASANRVEISINTQIKLIYRPPALTK 140 (226)
T ss_pred CceEEEEEEEEEcCCCCCcCccceEEEEeeeeeeEEEchhhcCC
Confidence 455799999999999532 1 3899999987654
No 26
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=21.64 E-value=66 Score=27.72 Aligned_cols=35 Identities=29% Similarity=0.776 Sum_probs=25.8
Q ss_pred CcceEEEecCCCCCCC-----CCc---------------eEEEEccccCCCCCCc
Q 030195 90 KAPVYWKTMNGLPPMS-----GEK---------------LKIFYNPYAKKLLPNE 124 (181)
Q Consensus 90 ~apVyWkt~nGlpP~s-----Ge~---------------L~lfyNp~as~l~PNe 124 (181)
|-.|||=.-.++||.. ++. +||||=|+.=+..|++
T Consensus 117 RESlfwlnv~~IPp~~~~~~~~~n~~~~~~~LqiairtrIKLFYRP~~L~~~~~~ 171 (246)
T PRK15233 117 EESLYWLCVKGVPPLNDNESNNKNNITTNLNVNVVTNSCIKLIYRPKTIDLTTME 171 (246)
T ss_pred ceEEEEEEEEEcCCCCcccccccccccccceEEEEeeeeeEEEEchhhcCCChhh
Confidence 3479999999999953 121 7899999976655544
No 27
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=21.03 E-value=96 Score=26.13 Aligned_cols=35 Identities=23% Similarity=0.605 Sum_probs=26.9
Q ss_pred CcceEEEecCCCCCCCC----C----------ceEEEEccccCCCCCCc
Q 030195 90 KAPVYWKTMNGLPPMSG----E----------KLKIFYNPYAKKLLPNE 124 (181)
Q Consensus 90 ~apVyWkt~nGlpP~sG----e----------~L~lfyNp~as~l~PNe 124 (181)
|-.+||=....+||... + ++||||-|+.-+..+++
T Consensus 93 RESlf~lnv~~IP~~~~~~~~~~~~l~iair~rIKlFyRP~~L~~~~~~ 141 (233)
T PRK15246 93 RESLFWLNIYQIPPVTQDIKNHPRKLVLPLRLRLKILIRPTGLKAPTEA 141 (233)
T ss_pred ceEEEEEEEEEcCCCCcccccccceEEEEeeeEEEEEECCcccCCChhh
Confidence 44799999999999642 1 38999999987665554
No 28
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=20.64 E-value=1.1e+02 Score=25.94 Aligned_cols=35 Identities=29% Similarity=0.690 Sum_probs=26.2
Q ss_pred CCcceEEEecCCCCCCCC----------CceEEEEccccCCCCCC
Q 030195 89 GKAPVYWKTMNGLPPMSG----------EKLKIFYNPYAKKLLPN 123 (181)
Q Consensus 89 G~apVyWkt~nGlpP~sG----------e~L~lfyNp~as~l~PN 123 (181)
.|-.+||=.-.++||..- .++||||-|..-+..++
T Consensus 96 DRESlf~lnv~~IP~~~~~~n~L~iair~~iKLFyRP~~L~~~~~ 140 (239)
T PRK15254 96 DRETLFWFNVRGVPPKPEDDNVLQLAMQSQLKLFYRPKAIIRSSS 140 (239)
T ss_pred CceEEEEEEEEEcCCCCCCCceEEEEEEeEEeEEEccccccCCcc
Confidence 455799999999999542 24899999998655554
No 29
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.20 E-value=1.1e+02 Score=25.49 Aligned_cols=36 Identities=28% Similarity=0.646 Sum_probs=28.0
Q ss_pred CCcceEEEecCCCCCCC----C---------CceEEEEccccCCCCCCc
Q 030195 89 GKAPVYWKTMNGLPPMS----G---------EKLKIFYNPYAKKLLPNE 124 (181)
Q Consensus 89 G~apVyWkt~nGlpP~s----G---------e~L~lfyNp~as~l~PNe 124 (181)
.+-.+||=.-.++||.. | ..+||||-|++-+-.|.|
T Consensus 105 drEslf~lnv~eIPp~~~~~~~~n~lq~a~r~riKlf~RP~~l~~~~~~ 153 (235)
T COG3121 105 DRESLFRLNVDEIPPKSKDDKGPNVLQLALRSRIKLFYRPAGLAGPPAE 153 (235)
T ss_pred CceeEEEEEeeecCCCCcccCCcceEEEEeeeeeeEEECcccCCCChhH
Confidence 45579999999999964 3 147999999988776654
No 30
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=20.01 E-value=99 Score=26.17 Aligned_cols=30 Identities=27% Similarity=0.695 Sum_probs=23.4
Q ss_pred CCcceEEEecCCCCCCCCC--------------ceEEEEccccC
Q 030195 89 GKAPVYWKTMNGLPPMSGE--------------KLKIFYNPYAK 118 (181)
Q Consensus 89 G~apVyWkt~nGlpP~sGe--------------~L~lfyNp~as 118 (181)
.|-.+||=.-..+||.... .+||||-|..-
T Consensus 111 DRESlf~lnv~eIP~~~~~~~~~~n~l~ialr~~IKLFyRP~~L 154 (253)
T PRK15249 111 DRESVFWFNVLQVPPTNIGSDSGQNKMLVMLRSRIKLFYRPDGL 154 (253)
T ss_pred CceEEEEEEeeecCCCCcccccccceEEEEeeeEEEEEEccccC
Confidence 3446999999999996421 38999999976
Done!