Query 030195
Match_columns 181
No_of_seqs 18 out of 20
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 16:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d6x_A (3R)-hydroxymyristoyl-[ 54.6 2.2 7.6E-05 29.9 -0.3 20 119-141 37-57 (146)
2 2gll_A FABZ, (3R)-hydroxymyris 33.1 8 0.00027 28.8 -0.3 28 106-141 51-79 (171)
3 1fcq_A Hyaluronoglucosaminidas 31.8 24 0.00082 31.1 2.4 30 104-136 46-80 (350)
4 2pe4_A Hyaluronidase-1; hyalur 31.0 21 0.00071 32.3 1.9 30 104-136 47-79 (424)
5 1klf_A FIMC chaperone, chapero 29.2 35 0.0012 26.6 2.8 63 40-123 50-125 (205)
6 2atm_A Hyaluronoglucosaminidas 26.4 32 0.0011 30.0 2.3 30 104-136 42-76 (331)
7 1u1z_A (3R)-hydroxymyristoyl-[ 26.4 32 0.0011 25.3 1.9 55 72-142 24-79 (168)
8 1jgn_B PAIP2, polyadenylate-bi 24.6 26 0.0009 21.0 1.0 16 113-128 6-21 (26)
9 1l4i_A SFAE protein; periplasm 24.4 36 0.0012 26.5 2.1 35 89-123 78-125 (206)
10 4h4g_A (3R)-hydroxymyristoyl-[ 23.0 26 0.0009 26.1 1.0 20 119-141 48-68 (160)
11 1wj3_A KIAA1496 protein; beta 22.1 42 0.0014 22.4 1.8 15 92-106 103-117 (117)
12 3gfu_C Chaperone protein FAEE; 21.9 66 0.0022 25.9 3.2 61 41-123 52-121 (224)
13 4ay0_A Chaperone protein CAF1M 20.2 53 0.0018 26.0 2.3 37 89-125 90-137 (218)
No 1
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=54.62 E-value=2.2 Score=29.94 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=17.0
Q ss_pred CCCCCcceeeeecCCC-CCceecC
Q 030195 119 KLLPNEDFGIGFNGGF-NQPFMCG 141 (181)
Q Consensus 119 ~l~PNe~fGiaFNGGF-NQPIMCG 141 (181)
.+.+|+.| |.|.| +||||-|
T Consensus 37 ~v~~~~~~---f~ghFp~~Pi~PG 57 (146)
T 3d6x_A 37 NISISDHV---FMGHFPGHPIYPG 57 (146)
T ss_dssp ECCTTBTH---HHHSCTTSCCCCH
T ss_pred EcCCCCCe---ecCCCCCCCcCch
Confidence 47788887 99999 7999977
No 2
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=33.08 E-value=8 Score=28.85 Aligned_cols=28 Identities=39% Similarity=0.730 Sum_probs=19.8
Q ss_pred CCceEEEEccccCCCCCCcceeeeecCCC-CCceecC
Q 030195 106 GEKLKIFYNPYAKKLLPNEDFGIGFNGGF-NQPFMCG 141 (181)
Q Consensus 106 Ge~L~lfyNp~as~l~PNe~fGiaFNGGF-NQPIMCG 141 (181)
|+.++-.. .+++|+.| |.|.| ++|||=|
T Consensus 51 g~~~~~~k-----~Vt~~e~f---f~GHFp~~PvmPG 79 (171)
T 2gll_A 51 NQKIVAYK-----NITFNEDV---FNGHFPNKPIFPG 79 (171)
T ss_dssp TTEEEEEE-----ECCSCSTH---HHHSCTTSCCCCH
T ss_pred CCEEEEEE-----EeCCCCCe---ecCCCCCCCcCch
Confidence 44555444 46677766 89999 8999976
No 3
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=31.80 E-value=24 Score=31.08 Aligned_cols=30 Identities=40% Similarity=0.757 Sum_probs=18.7
Q ss_pred CCCCceEEEEccccCCCCCCc--c-eeeee--cCCCCC
Q 030195 104 MSGEKLKIFYNPYAKKLLPNE--D-FGIGF--NGGFNQ 136 (181)
Q Consensus 104 ~sGe~L~lfyNp~as~l~PNe--~-fGiaF--NGGFNQ 136 (181)
-.||.++|||.| -+-|-= . =|..+ |||.=|
T Consensus 46 f~G~~itIfY~~---G~yP~~~~~~~g~~~~~NGGiPQ 80 (350)
T 1fcq_A 46 FRGEEIAILYDP---GMFPALLKDPNGNVVARNGGVPQ 80 (350)
T ss_dssp SSSSSEEEEESC---SCCCEEC-------CEETTSSGG
T ss_pred ccCCeEEEEeCC---CCCceeecCCCCCEeecCCCcCC
Confidence 379999999998 566632 1 46666 887655
No 4
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=30.99 E-value=21 Score=32.28 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=19.6
Q ss_pred CCCCceEEEEccccC---CCCCCcceeeeecCCCCC
Q 030195 104 MSGEKLKIFYNPYAK---KLLPNEDFGIGFNGGFNQ 136 (181)
Q Consensus 104 ~sGe~L~lfyNp~as---~l~PNe~fGiaFNGGFNQ 136 (181)
-.||.++|||.|.-- -+.++ |..+|||.=|
T Consensus 47 f~G~~itIfY~~~lG~yP~~~~~---g~~~NGGiPQ 79 (424)
T 2pe4_A 47 FRGPDMTIFYSSQLGTYPYYTPT---GEPVFGGLPQ 79 (424)
T ss_dssp SCCSSEEEECTTSSSCCCEECTT---SCEETTSSGG
T ss_pred cCCCeEEEEECCCCCCCceEcCC---CCcccCCcCC
Confidence 469999999997221 12222 5667888755
No 5
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=29.19 E-value=35 Score=26.60 Aligned_cols=63 Identities=22% Similarity=0.501 Sum_probs=40.6
Q ss_pred ccccccCCCccccceeEeeceeeeeeeecCCChhccccccCCchhhhccCCcceEEEecCCCCCCCCC------------
Q 030195 40 KGASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGE------------ 107 (181)
Q Consensus 40 ~g~~l~~s~~~~~~~Vr~~~~v~aaaa~at~~~e~~~ey~lpsWa~fElG~apVyWkt~nGlpP~sGe------------ 107 (181)
+..-+-|--+.++..|||..+. . -.|| ..+-.+||=.-..+||.+.+
T Consensus 50 vtPPl~rl~p~~~q~lRI~~~~-~--------------~~lP------~DrEslf~lnv~eIPp~~~~~~~~n~lqia~r 108 (205)
T 1klf_A 50 VTPPLFAMKGKKENTLRILDAT-N--------------NQLP------QDRESLFWMNVKAIPSMDKSKLTENTLQLAII 108 (205)
T ss_dssp EESSEEEECSSEEEEEEEEECS-C--------------SCSC------SSSCEEEEEEEEEECCCCTTSTTSCEEEEEEE
T ss_pred EcCCeEEECCCCceEEEEEecC-C--------------CCCC------CCceEEEEEEeEecCCCCccccCCceEEEEee
Confidence 3445556667777788864421 0 0233 24557999999999997532
Q ss_pred -ceEEEEccccCCCCCC
Q 030195 108 -KLKIFYNPYAKKLLPN 123 (181)
Q Consensus 108 -~L~lfyNp~as~l~PN 123 (181)
++||||-|+.-+-.|.
T Consensus 109 ~riKlFyRP~~l~~~~~ 125 (205)
T 1klf_A 109 SRIKLYYRPAKLALPPD 125 (205)
T ss_dssp EEEEEEEECTTCSSCGG
T ss_pred eeeeEEEcccccCCChh
Confidence 4899999987654333
No 6
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris}
Probab=26.43 E-value=32 Score=29.98 Aligned_cols=30 Identities=40% Similarity=0.617 Sum_probs=21.5
Q ss_pred CCCCceEEEEccccCCCCCCcc---eeeee--cCCCCC
Q 030195 104 MSGEKLKIFYNPYAKKLLPNED---FGIGF--NGGFNQ 136 (181)
Q Consensus 104 ~sGe~L~lfyNp~as~l~PNe~---fGiaF--NGGFNQ 136 (181)
-.||.++|||.| -+-|-=+ =|..+ |||.=|
T Consensus 42 f~G~~itIfY~~---G~yP~~~~~~~g~~~~~NGGiPQ 76 (331)
T 2atm_A 42 FQGDKIAIFYDP---GEFPALLSLKDGKYKKRNGGVPQ 76 (331)
T ss_dssp SSCSSEEEEESC---SCCCEEEECSSSCEEEETTSSGG
T ss_pred ccCCeEEEEeCC---CCCceeecCCCCCEeeCCCCcCC
Confidence 379999999999 6666321 36666 887655
No 7
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=26.36 E-value=32 Score=25.25 Aligned_cols=55 Identities=36% Similarity=0.562 Sum_probs=33.3
Q ss_pred hhccccccCCchhhhccCCcceEEEecCCCCCCCCCceEEEEccccCCCCCCcceeeeecCCC-CCceecCC
Q 030195 72 YEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGF-NQPFMCGG 142 (181)
Q Consensus 72 ~e~~~ey~lpsWa~fElG~apVyWkt~nGlpP~sGe~L~lfyNp~as~l~PNe~fGiaFNGGF-NQPIMCGG 142 (181)
.++|.++ ||.=.-|-|=..-+-|+- .|+.+.-|.| +++|+.| |.|-| .+|||-|-
T Consensus 24 ~~~I~~~-lPhr~p~llvDrv~~~~~-------~g~~i~~~~~-----vt~d~~f---f~ghFpg~pI~pGv 79 (168)
T 1u1z_A 24 INEIREY-LPHRYPFLLVDRVVELDI-------EGKRIRAYKN-----VSINEPF---FNGHFPEHPIMPGV 79 (168)
T ss_dssp HHHHTTT-CCCCTTSCCCCEEEEEET-------TTTEEEEEEE-----CCTTSTT---GGGSCTTSCCCCHH
T ss_pred HHHHHHh-CCCCCCeEEEEEEEEEec-------CCCEEEEEEE-----eCCCCCe---EeCCCCCCCccCHH
Confidence 4555553 565444444333344431 2567777775 5667765 58999 99999883
No 8
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=24.59 E-value=26 Score=21.00 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=14.2
Q ss_pred EccccCCCCCCcceee
Q 030195 113 YNPYAKKLLPNEDFGI 128 (181)
Q Consensus 113 yNp~as~l~PNe~fGi 128 (181)
.||.|....|.-.||-
T Consensus 6 lnp~akef~pgvkygn 21 (26)
T 1jgn_B 6 LNPNAKEFVPGVKYGN 21 (26)
T ss_dssp SCTTCCCCCTTSCTTC
T ss_pred CCcchhhcCCCceecc
Confidence 5999999999999883
No 9
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=24.40 E-value=36 Score=26.48 Aligned_cols=35 Identities=20% Similarity=0.703 Sum_probs=25.8
Q ss_pred CCcceEEEecCCCCCCCC-------------CceEEEEccccCCCCCC
Q 030195 89 GKAPVYWKTMNGLPPMSG-------------EKLKIFYNPYAKKLLPN 123 (181)
Q Consensus 89 G~apVyWkt~nGlpP~sG-------------e~L~lfyNp~as~l~PN 123 (181)
.+-.+||=.-..+||... .++||||-|+.-+-.|.
T Consensus 78 DrEslf~lnv~eIPp~~~~~~~~n~lqia~r~riKlFyRP~~l~~~~~ 125 (206)
T 1l4i_A 78 DRESLFWVNVKAIPAMDKAKTGENYLQFAIVSRIKLLYRPQGLVIPPE 125 (206)
T ss_dssp SSCEEEEEEEEEEECCC--------CCCEEEEEEEEEEECTTCSSCGG
T ss_pred CceEEEEEEeecCCCCcccccCCceEEEEhhheeeEEEeccccCCChh
Confidence 455799999999998753 25899999997654444
No 10
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=23.01 E-value=26 Score=26.12 Aligned_cols=20 Identities=45% Similarity=0.845 Sum_probs=16.6
Q ss_pred CCCCCcceeeeecCCC-CCceecC
Q 030195 119 KLLPNEDFGIGFNGGF-NQPFMCG 141 (181)
Q Consensus 119 ~l~PNe~fGiaFNGGF-NQPIMCG 141 (181)
.+++||.| |.|.| ++|||=|
T Consensus 48 ~Vt~~e~f---f~gHFp~~PvmPG 68 (160)
T 4h4g_A 48 NVTVNEPF---FTGHFPKRPVMPG 68 (160)
T ss_dssp ECCTTSGG---GGTSCTTSCCCCH
T ss_pred EeccCccc---ccCCCCCCCcCcH
Confidence 57889988 89998 7899965
No 11
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=22.05 E-value=42 Score=22.41 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=14.1
Q ss_pred ceEEEecCCCCCCCC
Q 030195 92 PVYWKTMNGLPPMSG 106 (181)
Q Consensus 92 pVyWkt~nGlpP~sG 106 (181)
+|.-+|..|.||+||
T Consensus 103 ~v~~~T~~~v~p~~~ 117 (117)
T 1wj3_A 103 QIRIPRITSSGPSSG 117 (117)
T ss_dssp CEEECCCCCCCSCCC
T ss_pred CEEEEcCCCCCCCCC
Confidence 789999999999998
No 12
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=21.89 E-value=66 Score=25.91 Aligned_cols=61 Identities=31% Similarity=0.487 Sum_probs=39.4
Q ss_pred cccccCCCccccceeEeeceeeeeeeecCCChhccccccCCchhhhccCCcceEEEecCCCCCCCCC---------ceEE
Q 030195 41 GASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGE---------KLKI 111 (181)
Q Consensus 41 g~~l~~s~~~~~~~Vr~~~~v~aaaa~at~~~e~~~ey~lpsWa~fElG~apVyWkt~nGlpP~sGe---------~L~l 111 (181)
..-+-|--+.++..|||-..- -.|| ..|-.+||=.-..+||...+ ++||
T Consensus 52 tPPlfRlep~~~q~lRIi~~~----------------~~LP------~DRESlf~lnv~eIPp~~~~n~Lqiair~rIKL 109 (224)
T 3gfu_C 52 TPSFFKVKPNGQQTLRIIMAS----------------DHLP------KDKESVYWLNLQDIPPALEGSGIAVALRTKLKL 109 (224)
T ss_dssp ESSEEEECTTCEEEEEEEECS----------------CCCC------SSSCEEEEEEEEEECCCCSSSBCCEEEEEEEEE
T ss_pred cCCeEEECCCCceEEEEEECC----------------CCCC------CCceEEEEEEeecCCCCCCCCeEEEEEEEEeeE
Confidence 345555666777777763220 0234 24557999999999997632 3899
Q ss_pred EEccccCCCCCC
Q 030195 112 FYNPYAKKLLPN 123 (181)
Q Consensus 112 fyNp~as~l~PN 123 (181)
||-|+.-+-.|.
T Consensus 110 FyRP~~L~~~~~ 121 (224)
T 3gfu_C 110 FYRPKALLEGRK 121 (224)
T ss_dssp EEECGGGTTCCT
T ss_pred EEcccccccCcc
Confidence 999987554443
No 13
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=20.17 E-value=53 Score=26.02 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=26.0
Q ss_pred CCcceEEEecCCCCCCCCC-----------ceEEEEccccCCCCCCcc
Q 030195 89 GKAPVYWKTMNGLPPMSGE-----------KLKIFYNPYAKKLLPNED 125 (181)
Q Consensus 89 G~apVyWkt~nGlpP~sGe-----------~L~lfyNp~as~l~PNe~ 125 (181)
.|-.+||=....+||..-+ ++||||-|+.-+-.|.+.
T Consensus 90 DRESlf~lnv~eIPp~~~~~~n~lqia~r~rIKlFyRP~~L~~~~~~~ 137 (218)
T 4ay0_A 90 DKESLKWLCVKGIPPKDEDIWVDVQFAINNCIKLLVRPNELKGTPIQF 137 (218)
T ss_dssp SSCEEEEEEEEEECC--------------CEEEEEEECTTCCSCGGGT
T ss_pred CcEEEEEEEEEecCCCCccccceeEEEEEEEEEEEEcCcccCCChhHh
Confidence 4557899999999987532 489999998876666553
Done!