BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030198
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 103/137 (75%), Gaps = 1/137 (0%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
HPL+ + FWY+RRTPG T + SYE NIK+I F++VE FW Y H+ RP L +D
Sbjct: 15 HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDF 74
Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSI 159
HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+LA++G+Q G+ ICGAV+S+
Sbjct: 75 HLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSV 134
Query: 160 RFNEDILSVWNRNASDH 176
RF EDI+S+WN+ ASD
Sbjct: 135 RFQEDIISIWNKTASDQ 151
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7-
Methyl-Gdp
Length = 177
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N + FW+ G Q ++ I I FSTVE FW Y ++ PS L D H
Sbjct: 2 HPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR 160
FK I P WED + NGGKW I + S FW +LA++G+Q D+GD ICGAV+S+R
Sbjct: 61 CFKNKIEPKWEDPISANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVR 120
Query: 161 FNEDILSVWNRNASD 175
++ +++W +NA++
Sbjct: 121 QKQERVAIWTKNAAN 135
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N + FW+ G Q ++ I I FSTVE FW Y ++ PS L D H
Sbjct: 2 HPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR 160
FK I P WED NGGKW I + S FW +LA++G+Q D+GD ICGAV+S+R
Sbjct: 61 CFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVR 120
Query: 161 FNEDILSVWNRNASD 175
++ +++W +NA++
Sbjct: 121 QKQERVAIWTKNAAN 135
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex
pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex
Length = 248
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL N + WY S+ED +I F TVE FW Y H+ PS + +D
Sbjct: 70 HPLMNVWTLWYLEND----RSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 125
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSG---RFWEDLVLALVGDQLDYGDNICGAVL 157
LFK+ IRP+WED+AN GG+W+I K W D++L L+G+ D+ D ICGAV+
Sbjct: 126 LFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVI 185
Query: 158 SIRFNEDILSVWNRNASDHQVC 179
+IR + +S+W + ++ +
Sbjct: 186 NIRGKSNKISIWTADGNNEEAA 207
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
Length = 178
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Query: 41 HPLKNKFVFWYTRRTPGVRT-QTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
H L+N + FW+ TP ++ Q ++ +++ I FSTVE FW Y ++ P L D
Sbjct: 3 HLLENSWTFWFD--TPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADF 60
Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSI 159
+ FK I P WED NGGKW + K S W +LA++G+Q D+GD ICGAV+++
Sbjct: 61 YCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 120
Query: 160 RFNEDILSVWNRNASD 175
R + +S+W +NAS+
Sbjct: 121 RGRAEKISIWTKNASN 136
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 9/138 (6%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+ + WY + +ED +K++ F TVE FW Y H+ S L +D +
Sbjct: 3 HPLQCHWALWYLK----ADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYY 58
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGR----FWEDLVLALVGDQL-DYGDNICGA 155
LFKEGI+P+WED N GG+W++ K + +W +L++A++G+Q D G+ ICGA
Sbjct: 59 LFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGA 118
Query: 156 VLSIRFNEDILSVWNRNA 173
V+++R D +S+W R++
Sbjct: 119 VVNVRQKGDKVSLWTRDS 136
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
Length = 217
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N++ W+ ++ +++ N++ I F TVE FW Y H+ S L D
Sbjct: 37 HPLQNRWALWFFKKDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 92
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQLD-YGDNICGA 155
LFK+GI P+WED N GG+W+I K RFW + +L L+G+ D Y D++CGA
Sbjct: 93 LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 152
Query: 156 VLSIRFNEDILSVW-----NRNASDH 176
V+++R D +++W NR A H
Sbjct: 153 VVNVRAKGDKIAIWTTECENREAVTH 178
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
pdb|4DUM|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
Length = 240
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N++ W+ + +++ N++ I F TVE FW Y H+ S L D
Sbjct: 60 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 115
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQLD-YGDNICGA 155
LFK+GI P+WED N GG+W+I K RFW + +L L+G+ D Y D++CGA
Sbjct: 116 LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 175
Query: 156 VLSIRFNEDILSVW-----NRNASDH 176
V+++R D +++W NR A H
Sbjct: 176 VVNVRAKGDKIAIWTTECENREAVTH 201
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gpppa
pdb|1IPC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gtp
pdb|2GPQ|A Chain A, Cap-Free Structure Of Eif4e Suggests Basis For Its
Allosteric Regulation
pdb|2V8W|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8W|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2W97|A Chain A, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
pdb|3TF2|A Chain A, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|B Chain B, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|C Chain C, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|D Chain D, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3U7X|A Chain A, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|3U7X|B Chain B, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|4AZA|A Chain A, Improved Eif4e Binding Peptides By Phage Display Guided
Design.
pdb|4AZA|C Chain C, Improved Eif4e Binding Peptides By Phage Display Guided
Design
Length = 217
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N++ W+ + +++ N++ I F TVE FW Y H+ S L D
Sbjct: 37 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 92
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQLD-YGDNICGA 155
LFK+GI P+WED N GG+W+I K RFW + +L L+G+ D Y D++CGA
Sbjct: 93 LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 152
Query: 156 VLSIRFNEDILSVW-----NRNASDH 176
V+++R D +++W NR A H
Sbjct: 153 VVNVRAKGDKIAIWTTECENREAVTH 178
>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ1|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ4|A Chain A, Cocrystal Structure Of Eif4e4E-Bp1 Peptide
pdb|1EJH|A Chain A, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|B Chain B, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|C Chain C, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|D Chain D, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1L8B|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
Length = 190
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N++ W+ + +++ N++ I F TVE FW Y H+ S L D
Sbjct: 10 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 65
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGA 155
LFK+GI P+WED N GG+W+I K RFW + +L L+G+ DY D++CGA
Sbjct: 66 LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 125
Query: 156 VLSIRFNEDILSVW-----NRNASDH 176
V+++R D +++W NR+A H
Sbjct: 126 VVNVRAKGDKIAIWTTECENRDAVTH 151
>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa-
4ebp1 Peptide
pdb|3AM7|A Chain A, Crystal Structure Of The Ternary Complex Of
Eif4e-M7gtp-4ebp2 Peptide
Length = 191
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N++ W+ + +++ N++ I F TVE FW Y H+ S L D
Sbjct: 11 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 66
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQLD-YGDNICGA 155
LFK+GI P+WED N GG+W+I K RFW + +L L+G+ D Y D++CGA
Sbjct: 67 LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 126
Query: 156 VLSIRFNEDILSVW-----NRNASDH 176
V+++R D +++W NR A H
Sbjct: 127 VVNVRAKGDKIAIWTTECENREAVTH 152
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp,
Nmr, 20 Structures
Length = 213
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL K+ WYT+ P V S+ D ++ + F TVE FW ++ P LP +D H
Sbjct: 37 HPLNTKWTLWYTK--PAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYH 94
Query: 101 LFKEGIRPLWEDSANCNGGKWI--IRFKKVVSGRFWEDLVLALVGDQLDYGDN-ICGAVL 157
+F+ +RP WED AN GGKW +R K W +LA++G+ +D D+ I G VL
Sbjct: 95 VFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVL 154
Query: 158 SIRFNEDILSVWNRN 172
SIR + ++W ++
Sbjct: 155 SIRKGGNKFALWTKS 169
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation
Factor Eif4e In Complex With M7gdp And Eif4gi Residues
393 To 490
Length = 213
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL K+ WYT+ P V S+ D ++ + F TVE FW ++ P LP +D H
Sbjct: 37 HPLNTKWTLWYTK--PAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYH 94
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRF--KKVVSGRFWEDLVLALVGDQLDYGDN-ICGAVL 157
+F+ +RP WED AN GGKW + K W +LA++G+ +D D+ I G VL
Sbjct: 95 VFRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIGETIDEDDSQINGVVL 154
Query: 158 SIRFNEDILSVWNR 171
SIR + ++W +
Sbjct: 155 SIRKGGNKFALWTK 168
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 42 PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHL 101
PL + + FW R PG T N+KKI TV+ FW Y ++ + LP HL
Sbjct: 31 PLHSPWTFWLDRSLPGA-TAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHL 89
Query: 102 FKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLD----YGDNICGAVL 157
+ RPLWE+ +N GG W ++ K + W++L+LA +G+Q D I G +
Sbjct: 90 MRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSV 149
Query: 158 SIRFNEDILSVWNRNAS 174
S+R ED++ VWN NAS
Sbjct: 150 SVRDREDVVQVWNVNAS 166
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With
M7gpppa And 4e-Bp
pdb|3HXI|A Chain A, Crystal Structure Of Schistosome Eif4e Complexed With
M7gpppg And 4e-Bp
Length = 189
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL++ + ++ + R +++ ++K+ FST+E FW H RP + DL+
Sbjct: 10 HPLQDSWSYYLFQ----FRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRF-WEDLVLALVGDQLDYGD---NICGAV 156
+FK I P WED N NGG+W+I F W++L++ L+G D + ICGAV
Sbjct: 66 MFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125
Query: 157 LSIRFNEDILSVW 169
R LSVW
Sbjct: 126 FQPRSRGSKLSVW 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,782,561
Number of Sequences: 62578
Number of extensions: 237205
Number of successful extensions: 475
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 19
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)