Query 030198
Match_columns 181
No_of_seqs 120 out of 642
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1670 Translation initiation 100.0 1.4E-52 3E-57 344.2 11.3 137 39-179 33-172 (212)
2 PTZ00040 translation initiatio 100.0 5.5E-49 1.2E-53 330.3 12.7 142 38-179 35-200 (233)
3 PF01652 IF4E: Eukaryotic init 100.0 2.1E-48 4.6E-53 310.3 12.6 137 42-179 1-141 (165)
4 KOG1669 Predicted mRNA cap-bin 100.0 1.9E-47 4E-52 307.1 9.1 154 25-179 14-167 (208)
5 COG5053 CDC33 Translation init 100.0 3.8E-40 8.3E-45 267.6 9.7 139 38-178 34-176 (217)
6 PF08939 DUF1917: Domain of un 82.4 3.3 7.1E-05 35.5 5.5 58 117-179 149-212 (243)
7 PF11525 CopK: Copper resistan 44.1 11 0.00024 26.6 0.8 20 92-112 11-30 (73)
8 PF08977 BOFC_N: Bypass of For 36.1 15 0.00032 24.3 0.4 30 72-104 21-50 (51)
9 KOG0080 GTPase Rab18, small G 33.4 72 0.0016 26.5 4.1 36 136-171 26-67 (209)
10 COG3822 ABC-type sugar transpo 30.2 47 0.001 28.0 2.6 29 99-127 91-125 (225)
11 PF06462 Hyd_WA: Propeller; I 25.1 59 0.0013 18.9 1.7 19 99-122 11-29 (32)
12 PF10842 DUF2642: Protein of u 21.8 1.7E+02 0.0036 20.2 3.7 41 129-169 7-50 (66)
13 PHA00689 hypothetical protein 21.3 50 0.0011 21.9 1.0 12 109-124 29-40 (62)
No 1
>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-52 Score=344.21 Aligned_cols=137 Identities=43% Similarity=0.869 Sum_probs=130.3
Q ss_pred CCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCCC
Q 030198 39 NLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG 118 (181)
Q Consensus 39 ~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~nG 118 (181)
..|||++.|||||..+..+ .+|++.|+.|.+|+|||+||++|++|++||.|+.+++|++||+||+||||||+|++|
T Consensus 33 ~~hpL~~~WTlW~l~~d~~----ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~G 108 (212)
T KOG1670|consen 33 IKHPLQNNWTLWFLKNDRN----KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKNG 108 (212)
T ss_pred cccccccceeEEeecCCcc----ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccCC
Confidence 5899999999999988642 389999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecC---CchHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198 119 GKWIIRFKK---VVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 119 G~w~i~~~k---~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v 179 (181)
|||++.+++ +..|.+|.++||+||||+|+++++|||+|+++|+.++|||||++++.+++++
T Consensus 109 GrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISvWT~~~~ne~~~ 172 (212)
T KOG1670|consen 109 GRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISVWTKNAGNEEAV 172 (212)
T ss_pred CeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEEEecCCCchHHH
Confidence 999999985 4689999999999999999999999999999999999999999999999875
No 2
>PTZ00040 translation initiation factor E4; Provisional
Probab=100.00 E-value=5.5e-49 Score=330.35 Aligned_cols=142 Identities=32% Similarity=0.628 Sum_probs=128.0
Q ss_pred CCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcc---------------eEEe
Q 030198 38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTD---------------LHLF 102 (181)
Q Consensus 38 ~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~---------------~~lF 102 (181)
...|||+++|||||+.+..+.....+|.++|++|++|+|||+||++|+||++||+|+.+++ ||||
T Consensus 35 ~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lF 114 (233)
T PTZ00040 35 STPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIF 114 (233)
T ss_pred CCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeeee
Confidence 5679999999999998754323345899999999999999999999999999999998874 9999
Q ss_pred eCCCcccCccCCCCCCcEEEEEecC-----CchHHHHHHHHHHHhhcCCCCCCCeeeEEE----EeeCCCcEEEEecCCC
Q 030198 103 KEGIRPLWEDSANCNGGKWIIRFKK-----VVSGRFWEDLVLALVGDQLDYGDNICGAVL----SIRFNEDILSVWNRNA 173 (181)
Q Consensus 103 K~gI~P~WEDp~N~nGG~w~i~~~k-----~~~~~~We~lvl~~IGe~~~~~~~I~Gvvl----s~R~~~~~IsIW~~~~ 173 (181)
|+||+||||||+|++||+|+|++++ ..++++|++|||++|||+|+.+++||||+| |+|++.+||+||++++
T Consensus 115 K~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~~ 194 (233)
T PTZ00040 115 KDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNL 194 (233)
T ss_pred cCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCCC
Confidence 9999999999999999999999964 357899999999999999998999999996 6778899999999999
Q ss_pred CCcccc
Q 030198 174 SDHQVC 179 (181)
Q Consensus 174 ~~~~~v 179 (181)
++++++
T Consensus 195 ~d~~~~ 200 (233)
T PTZ00040 195 GDQSDR 200 (233)
T ss_pred CCHHHH
Confidence 988764
No 3
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=100.00 E-value=2.1e-48 Score=310.31 Aligned_cols=137 Identities=50% Similarity=0.997 Sum_probs=124.4
Q ss_pred CCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCCCcEE
Q 030198 42 PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKW 121 (181)
Q Consensus 42 pL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~nGG~w 121 (181)
||+++|||||+......+ ..+|.++|++|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|++||+|
T Consensus 1 pL~~~Wt~w~~~~~~~~~-~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~ 79 (165)
T PF01652_consen 1 PLQNKWTFWYDKKQKNSK-SDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRW 79 (165)
T ss_dssp EEEEEEEEEEEECCCCCT-TSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEE
T ss_pred CcCCEEEEEEEecCCCCc-hhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEE
Confidence 799999999996544333 3589999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC---chHHHHHHHHHHHhhcCCCCC-CCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198 122 IIRFKKV---VSGRFWEDLVLALVGDQLDYG-DNICGAVLSIRFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 122 ~i~~~k~---~~~~~We~lvl~~IGe~~~~~-~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v 179 (181)
+|++++. .++++|++|||++|||+|+.. ++||||++|+|++.++|+||++++++++.+
T Consensus 80 ~i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~~~~ 141 (165)
T PF01652_consen 80 IIRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDSSDEDAQ 141 (165)
T ss_dssp EEEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESSTT-HHHH
T ss_pred EEEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCCCCHHHH
Confidence 9999998 899999999999999999865 899999999999999999999999887543
No 4
>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-47 Score=307.15 Aligned_cols=154 Identities=60% Similarity=1.074 Sum_probs=144.0
Q ss_pred ChHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeC
Q 030198 25 NKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKE 104 (181)
Q Consensus 25 ~~~~~~~~~~~~~~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~ 104 (181)
+....++.++.+..+.|||++..+|||..+.++..+ .+|++.+++||+|.|||+||++|.|+.+|+.|+...++||||+
T Consensus 14 n~~s~~r~a~v~~d~dh~l~y~~t~~y~~r~~Gv~~-qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKe 92 (208)
T KOG1669|consen 14 NSVSEERRARVLMDMDHPLQYVYTFWYERRTPGVSK-QSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKE 92 (208)
T ss_pred cchhhhhccccCCCCCCcceEEEEEEEEecCCCCCh-hhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhc
Confidence 344455666777788999999999999999888764 5999999999999999999999999999999999999999999
Q ss_pred CCcccCccCCCCCCcEEEEEecCCchHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198 105 GIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 105 gI~P~WEDp~N~nGG~w~i~~~k~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v 179 (181)
||+|+|||++|.|||+|+|+++|..+.++||+|||+++||+|..+++|||+|+|+|.++++||||++++++..++
T Consensus 93 GIkPvWED~aN~nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSiWnRna~dta~~ 167 (208)
T KOG1669|consen 93 GIKPVWEDKANCNGGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISIWNRNASDTADT 167 (208)
T ss_pred cCcccccCcCCCCCCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhhhcCCCCcchhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764
No 5
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-40 Score=267.61 Aligned_cols=139 Identities=37% Similarity=0.725 Sum_probs=127.8
Q ss_pred CCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCC
Q 030198 38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN 117 (181)
Q Consensus 38 ~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~n 117 (181)
-..|||+..|||||..++.. +.+.|.+.|+.|++|+|||+||.+.++|+.++.||..++|++||+||+|+|||++|++
T Consensus 34 ~~~hpl~~~wtlw~l~p~e~--g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~~ 111 (217)
T COG5053 34 MNKHPLAFHWTLWFLKPPED--GLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMN 111 (217)
T ss_pred hhcCccccceEEEEecCCcc--chhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccCC
Confidence 34799999999999988743 2346999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCC---chHHHHHHHHHHHhhcCCCC-CCCeeeEEEEeeCCCcEEEEecCCCCCccc
Q 030198 118 GGKWIIRFKKV---VSGRFWEDLVLALVGDQLDY-GDNICGAVLSIRFNEDILSVWNRNASDHQV 178 (181)
Q Consensus 118 GG~w~i~~~k~---~~~~~We~lvl~~IGe~~~~-~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~ 178 (181)
||+|.+.+++. ..+++|...++++||++|+. +.+|||||++.|++.+||+||++++.+.+.
T Consensus 112 Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dv 176 (217)
T COG5053 112 GGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDV 176 (217)
T ss_pred CCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHH
Confidence 99999999865 36789999999999999975 678999999999999999999999988765
No 6
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=82.36 E-value=3.3 Score=35.53 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=40.3
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHhhcCCCCCCCeeeEEEEe------eCCCcEEEEecCCCCCcccc
Q 030198 117 NGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSI------RFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 117 nGG~w~i~~~k~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~------R~~~~~IsIW~~~~~~~~~v 179 (181)
--|+|+|-+++..++.+|..+.-+++.+.|. +++-|+. ..+...|.|.+.|..+.+.|
T Consensus 149 ~sGKWmlf~~~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV 212 (243)
T PF08939_consen 149 TSGKWMLFPPPDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDV 212 (243)
T ss_dssp --EEEEEEE-TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-HHHH
T ss_pred ccceeEEEcCHHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCHHHH
Confidence 3799999999999999999999999987763 3445554 12346799999999988765
No 7
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=44.11 E-value=11 Score=26.59 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=15.5
Q ss_pred CCCCCcceEEeeCCCcccCcc
Q 030198 92 LLPSPTDLHLFKEGIRPLWED 112 (181)
Q Consensus 92 ~L~~~~~~~lFK~gI~P~WED 112 (181)
.|..++.+|+||+|--.| ||
T Consensus 11 ~LkDGstvyiFKDGKMam-Ed 30 (73)
T PF11525_consen 11 PLKDGSTVYIFKDGKMAM-ED 30 (73)
T ss_dssp EBTTSEEEEEETTS-EEE-EE
T ss_pred ecCCCCEEEEEcCCceeh-hh
Confidence 578999999999996554 55
No 8
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=36.08 E-value=15 Score=24.32 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=22.0
Q ss_pred eeecchhhHHHhhccCCCCCCCCCCcceEEeeC
Q 030198 72 VDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKE 104 (181)
Q Consensus 72 ~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~ 104 (181)
.++-|.|+||+-|..-...+ ...++.+||+
T Consensus 21 Eti~s~ed~w~~Y~~WqLv~---q~~~~ivFrk 50 (51)
T PF08977_consen 21 ETIWSMEDFWAKYKGWQLVD---QDDDQIVFRK 50 (51)
T ss_dssp EEEEEHHHHHHHSTTSEEEE---EETTEEEEEE
T ss_pred eeeccHHHHHHhhcCcEEEE---ccCCEEEEEc
Confidence 48889999999998766543 3345777774
No 9
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=33.44 E-value=72 Score=26.46 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCCCCC-CeeeEEE-----EeeCCCcEEEEecC
Q 030198 136 DLVLALVGDQLDYGD-NICGAVL-----SIRFNEDILSVWNR 171 (181)
Q Consensus 136 ~lvl~~IGe~~~~~~-~I~Gvvl-----s~R~~~~~IsIW~~ 171 (181)
.|+|.++...|+... --.||-| +++.+..+++||-.
T Consensus 26 SLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDT 67 (209)
T KOG0080|consen 26 SLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDT 67 (209)
T ss_pred HHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEec
Confidence 578899999997533 3478875 46678899999943
No 10
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=30.22 E-value=47 Score=27.98 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=23.2
Q ss_pred eEEeeCCCccc---C---ccCCCCCCcEEEEEecC
Q 030198 99 LHLFKEGIRPL---W---EDSANCNGGKWIIRFKK 127 (181)
Q Consensus 99 ~~lFK~gI~P~---W---EDp~N~nGG~w~i~~~k 127 (181)
+++++.-+.|| | ||-.|..||.+++++-+
T Consensus 91 M~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~ 125 (225)
T COG3822 91 MHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWN 125 (225)
T ss_pred EEeccCCcCcccccccchhhhhhcCCceEEEEEec
Confidence 56677777887 3 88899999999999743
No 11
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=25.12 E-value=59 Score=18.90 Aligned_cols=19 Identities=37% Similarity=0.760 Sum_probs=14.2
Q ss_pred eEEeeCCCcccCccCCCCCCcEEE
Q 030198 99 LHLFKEGIRPLWEDSANCNGGKWI 122 (181)
Q Consensus 99 ~~lFK~gI~P~WEDp~N~nGG~w~ 122 (181)
-.+||.||.| .|..|-.|.
T Consensus 11 ~v~~R~Gis~-----~~P~G~~W~ 29 (32)
T PF06462_consen 11 SVYFRTGISP-----SNPEGTSWE 29 (32)
T ss_pred CEEEECcCCC-----CCCCCCCcE
Confidence 5689999998 356677665
No 12
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=21.81 E-value=1.7e+02 Score=20.18 Aligned_cols=41 Identities=10% Similarity=0.223 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHhhcCCC---CCCCeeeEEEEeeCCCcEEEEe
Q 030198 129 VSGRFWEDLVLALVGDQLD---YGDNICGAVLSIRFNEDILSVW 169 (181)
Q Consensus 129 ~~~~~We~lvl~~IGe~~~---~~~~I~Gvvls~R~~~~~IsIW 169 (181)
..|-++-..+.++||..+- ..+.+-|+..+++...+.|+.+
T Consensus 7 ~vdpyvyq~lq~liG~~vvV~T~~g~v~G~L~~V~pDhIvl~~~ 50 (66)
T PF10842_consen 7 LVDPYVYQTLQSLIGQRVVVQTTRGSVRGILVDVKPDHIVLEEN 50 (66)
T ss_pred ccCHHHHHHHHHhcCCEEEEEEcCCcEEEEEEeecCCEEEEEeC
Confidence 3577888999999999872 3568999999999988888766
No 13
>PHA00689 hypothetical protein
Probab=21.35 E-value=50 Score=21.91 Aligned_cols=12 Identities=50% Similarity=1.487 Sum_probs=10.0
Q ss_pred cCccCCCCCCcEEEEE
Q 030198 109 LWEDSANCNGGKWIIR 124 (181)
Q Consensus 109 ~WEDp~N~nGG~w~i~ 124 (181)
-|||. ||.|++-
T Consensus 29 rwedd----ggewvlm 40 (62)
T PHA00689 29 RWEDD----GGEWVLM 40 (62)
T ss_pred eeecC----CCcEEEE
Confidence 59985 9999975
Done!