Query 030198
Match_columns 181
No_of_seqs 120 out of 642
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2idr_A Eukaryotic translation 100.0 4.6E-54 1.6E-58 347.5 11.5 139 40-179 1-139 (177)
2 2jgb_A Eukaryotic translation 100.0 3.4E-53 1.2E-57 347.1 13.5 144 36-179 10-154 (195)
3 1l8b_A Eukaryotic translation 100.0 2.8E-52 9.5E-57 340.4 11.8 138 38-179 7-149 (190)
4 3hxi_A Eukaryotic translation 100.0 2.9E-52 9.8E-57 340.3 9.8 143 33-179 2-148 (189)
5 1ipb_A Eukaryotic translation 100.0 6.3E-52 2.2E-56 344.6 10.8 138 38-179 34-176 (217)
6 3m94_A Translation initiation 100.0 2.3E-51 7.8E-56 335.0 12.7 136 40-179 2-142 (189)
7 1ap8_A Translation initiation 100.0 3.1E-51 1.1E-55 339.6 13.3 139 37-178 33-174 (213)
8 4axg_A Eukaryotic translation 100.0 3E-49 1E-53 334.2 13.5 141 35-179 64-207 (248)
9 1ztp_A Basophilic leukemia exp 98.7 1.1E-08 3.8E-13 86.1 6.0 61 113-179 121-185 (251)
10 2k0q_A Putative uncharacterize 40.4 10 0.00035 25.8 1.2 20 92-112 11-30 (74)
11 1nrp_R Receptor based peptide 28.6 18 0.00062 19.3 0.7 12 104-115 13-24 (26)
12 3hki_C Proteinase-activated re 25.7 29 0.001 18.0 1.2 10 104-113 9-18 (21)
13 1nro_R Receptor based peptide 24.2 23 0.00077 19.1 0.6 11 104-114 13-23 (27)
No 1
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=100.00 E-value=4.6e-54 Score=347.53 Aligned_cols=139 Identities=40% Similarity=0.826 Sum_probs=131.3
Q ss_pred CCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCCCc
Q 030198 40 LHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGG 119 (181)
Q Consensus 40 ~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~nGG 119 (181)
.|||+++|||||+.+..+.+ ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||
T Consensus 1 ~HpL~~~Wt~W~~~~~~~~~-~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG 79 (177)
T 2idr_A 1 AHPLENAWTFWFDNPQGKSR-QVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGG 79 (177)
T ss_dssp CCEEEEEEEEEEECTTCSSC-EEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCE
T ss_pred CCCCCCeEEEEEEcCCCCCc-ccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCC
Confidence 59999999999998764333 45899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198 120 KWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 120 ~w~i~~~k~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v 179 (181)
+|+|+++|..++++|++|||++|||+|+.+++|||||+|+|+++++|+||++++++++++
T Consensus 80 ~w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~ 139 (177)
T 2idr_A 80 KWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQ 139 (177)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEEEESCTTCHHHH
T ss_pred EEEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEEEcCCCCCHHHH
Confidence 999999999999999999999999999988999999999999999999999999988764
No 2
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=100.00 E-value=3.4e-53 Score=347.07 Aligned_cols=144 Identities=53% Similarity=1.069 Sum_probs=134.0
Q ss_pred ccCCCCCCCCceEEEEEcCCCCC-CCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCC
Q 030198 36 LKANLHPLKNKFVFWYTRRTPGV-RTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA 114 (181)
Q Consensus 36 ~~~~~hpL~~~WtfW~~~~~~~~-~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~ 114 (181)
.....|||+++|||||+.+.++. ....+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus 10 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~ 89 (195)
T 2jgb_A 10 PGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDA 89 (195)
T ss_dssp CCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTT
T ss_pred CCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCC
Confidence 45678999999999999875432 23458999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCchHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198 115 NCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 115 N~nGG~w~i~~~k~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v 179 (181)
|++||+|+|+++|..++++|++|||++|||+|+.+++|||||+|+|.++++|+||++++++++++
T Consensus 90 N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~ 154 (195)
T 2jgb_A 90 NKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATT 154 (195)
T ss_dssp TTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEEEESCTTCHHHH
T ss_pred CCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEEEcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988754
No 3
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=100.00 E-value=2.8e-52 Score=340.42 Aligned_cols=138 Identities=36% Similarity=0.841 Sum_probs=127.7
Q ss_pred CCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCC
Q 030198 38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN 117 (181)
Q Consensus 38 ~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~n 117 (181)
...|||+++|||||+.+.. ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus 7 ~~~hpL~~~Wt~W~~~~~~----~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~ 82 (190)
T 1l8b_A 7 YIKHPLQNRWALWFFKNDK----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR 82 (190)
T ss_dssp --CCEEEEEEEEEEEECCS----SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTT
T ss_pred cccCCCCCeEEEEEEcCCC----ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence 4689999999999998753 247999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCc----hHHHHHHHHHHHhhcCC-CCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198 118 GGKWIIRFKKVV----SGRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 118 GG~w~i~~~k~~----~~~~We~lvl~~IGe~~-~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v 179 (181)
||+|+|++++.. ++++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++++
T Consensus 83 GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~ 149 (190)
T 1l8b_A 83 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAV 149 (190)
T ss_dssp CEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHH
T ss_pred CCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCCCCHHHH
Confidence 999999998764 49999999999999999 668899999999999999999999999988764
No 4
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=100.00 E-value=2.9e-52 Score=340.33 Aligned_cols=143 Identities=29% Similarity=0.625 Sum_probs=129.8
Q ss_pred hhcccCCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCcc
Q 030198 33 ARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWED 112 (181)
Q Consensus 33 ~~~~~~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WED 112 (181)
|...+...|||+++|||||+++.. + .+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+|||||
T Consensus 2 ~~~~~~~~HpL~~~Wt~W~~~~~~---~-~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED 77 (189)
T 3hxi_A 2 PLGSPEFPHPLQDSWSYYLFQFRK---A-LDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWED 77 (189)
T ss_dssp -----CCCCEEEEEEEEEEECCCT---T-CCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTS
T ss_pred CCCCCCccCCCCCeEEEEEECCCC---c-cChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCC
Confidence 345678899999999999998653 2 479999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEecCC-chHHHHHHHHHHHhhcCC-CCCCC--eeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198 113 SANCNGGKWIIRFKKV-VSGRFWEDLVLALVGDQL-DYGDN--ICGAVLSIRFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 113 p~N~nGG~w~i~~~k~-~~~~~We~lvl~~IGe~~-~~~~~--I~Gvvls~R~~~~~IsIW~~~~~~~~~v 179 (181)
|+|++||+|+|+++|. .++++|++|||++|||+| +.+++ |||||+|+|+++++|+||++++++++++
T Consensus 78 ~~N~~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~ 148 (189)
T 3hxi_A 78 PKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETI 148 (189)
T ss_dssp HHHHTCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCSCCHHHH
T ss_pred cCCCCCcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCCCCHHHH
Confidence 9999999999999987 689999999999999999 55667 9999999999999999999999988764
No 5
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=100.00 E-value=6.3e-52 Score=344.62 Aligned_cols=138 Identities=36% Similarity=0.843 Sum_probs=128.8
Q ss_pred CCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCC
Q 030198 38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN 117 (181)
Q Consensus 38 ~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~n 117 (181)
...|||+++|||||+.+.. ..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus 34 ~~~hpL~~~Wt~W~~~~~~----~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~ 109 (217)
T 1ipb_A 34 YIKHPLQNRWALWFFKNDK----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR 109 (217)
T ss_dssp TSCCEEEEEEEEEEECCCT----TSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTT
T ss_pred ccCCCCCCeEEEEEEeCCc----ccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence 3579999999999998652 347999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCc----hHHHHHHHHHHHhhcCC-CCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198 118 GGKWIIRFKKVV----SGRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 118 GG~w~i~~~k~~----~~~~We~lvl~~IGe~~-~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v 179 (181)
||+|+|+++|.. ++++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++++
T Consensus 110 GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~ 176 (217)
T 1ipb_A 110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAV 176 (217)
T ss_dssp CEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCTTCHHHH
T ss_pred CCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCCCCHHHH
Confidence 999999999864 49999999999999999 778899999999999999999999999988764
No 6
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=100.00 E-value=2.3e-51 Score=335.04 Aligned_cols=136 Identities=38% Similarity=0.848 Sum_probs=127.0
Q ss_pred CCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCCCCc
Q 030198 40 LHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGG 119 (181)
Q Consensus 40 ~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~nGG 119 (181)
.|||+++|||||+++.. ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||
T Consensus 2 ~HpL~~~Wt~W~~~~~~----~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GG 77 (189)
T 3m94_A 2 RHPLQCHWALWYLKADR----SKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGG 77 (189)
T ss_dssp CCEEEEEEEEEEECCCS----SSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCE
T ss_pred CCCCCCcEEEEEECCCC----ccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCC
Confidence 69999999999987542 24899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC----chHHHHHHHHHHHhhcCCC-CCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198 120 KWIIRFKKV----VSGRFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 120 ~w~i~~~k~----~~~~~We~lvl~~IGe~~~-~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v 179 (181)
+|+|+++|. .++++|++|||++|||+|+ .+++|||||||+|+++++|+||++++++++++
T Consensus 78 kw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~ 142 (189)
T 3m94_A 78 RWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVN 142 (189)
T ss_dssp EEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCTTCHHHH
T ss_pred EEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCCCCHHHH
Confidence 999999875 4699999999999999994 68999999999999999999999999988754
No 7
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=100.00 E-value=3.1e-51 Score=339.63 Aligned_cols=139 Identities=34% Similarity=0.737 Sum_probs=127.3
Q ss_pred cCCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCCCC
Q 030198 37 KANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANC 116 (181)
Q Consensus 37 ~~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~ 116 (181)
....|||+++|||||+.+.. ....+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus 33 ~~~~hpL~~~Wt~W~~~~~~--~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~ 110 (213)
T 1ap8_A 33 FDVKHPLNTKWTLWYTKPAV--DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANA 110 (213)
T ss_dssp CCCSSEEEEEEEEEEECCCG--GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTT
T ss_pred CCCccccCCcEEEEEEcCCc--ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCC
Confidence 34789999999999998764 1235799999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEec--CCchHHHHHHHHHHHhhcCCCCCC-CeeeEEEEeeCCCcEEEEecCCCCCccc
Q 030198 117 NGGKWIIRFK--KVVSGRFWEDLVLALVGDQLDYGD-NICGAVLSIRFNEDILSVWNRNASDHQV 178 (181)
Q Consensus 117 nGG~w~i~~~--k~~~~~~We~lvl~~IGe~~~~~~-~I~Gvvls~R~~~~~IsIW~~~~~~~~~ 178 (181)
+||||+|+++ +..++++|++|||++|||+|+..+ +|||||+|+|+++++|+||++++ ++++
T Consensus 111 ~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~-~~~~ 174 (213)
T 1ap8_A 111 KGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE-DKEP 174 (213)
T ss_dssp TSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS-CHHH
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC-CHHH
Confidence 9999999984 347899999999999999998766 99999999999999999999998 6554
No 8
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=3e-49 Score=334.21 Aligned_cols=141 Identities=38% Similarity=0.797 Sum_probs=129.0
Q ss_pred cccCCCCCCCCceEEEEEcCCCCCCCccchhhhcceeeeecchhhHHHhhccCCCCCCCCCCcceEEeeCCCcccCccCC
Q 030198 35 ELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA 114 (181)
Q Consensus 35 ~~~~~~hpL~~~WtfW~~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~y~~i~~ps~L~~~~~~~lFK~gI~P~WEDp~ 114 (181)
......|||+++|||||+.+.. ..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus 64 ~~~~~kHpL~~~WtlW~~~~~~----~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~ 139 (248)
T 4axg_A 64 TEHLYKHPLMNVWTLWYLENDR----SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAA 139 (248)
T ss_dssp --CCCCCEEEEEEEEEEESCSC----CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTT
T ss_pred cccccCCCCCCeEEEEEeeCCC----ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCcc
Confidence 3445579999999999997643 247999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCc---hHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCCCcEEEEecCCCCCcccc
Q 030198 115 NCNGGKWIIRFKKVV---SGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQVC 179 (181)
Q Consensus 115 N~nGG~w~i~~~k~~---~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~~~~IsIW~~~~~~~~~v 179 (181)
|++||+|+|+++|.. ++++|++|||++|||+|+.+++|||||+|+|+++++|+||++++++++++
T Consensus 140 N~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~~~~ 207 (248)
T 4axg_A 140 NKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAA 207 (248)
T ss_dssp TTTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEEEESCTTCHHHH
T ss_pred CCCccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEEeCCCCcCHHHH
Confidence 999999999998754 57899999999999999988999999999999999999999999998754
No 9
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A
Probab=98.73 E-value=1.1e-08 Score=86.09 Aligned_cols=61 Identities=18% Similarity=0.370 Sum_probs=55.0
Q ss_pred CCCCCCcEEEEEecC-CchHHHHHHHHHHHhhcCCCCCCCeeeEEEEeeCC---CcEEEEecCCCCCcccc
Q 030198 113 SANCNGGKWIIRFKK-VVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFN---EDILSVWNRNASDHQVC 179 (181)
Q Consensus 113 p~N~nGG~w~i~~~k-~~~~~~We~lvl~~IGe~~~~~~~I~Gvvls~R~~---~~~IsIW~~~~~~~~~v 179 (181)
+.|..||||+|.+++ ..++++|+++++++|+++ +||++|+.|.. ..+|+||++|..+.+.|
T Consensus 121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~edV 185 (251)
T 1ztp_A 121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDRLGV 185 (251)
T ss_dssp HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCHHHH
T ss_pred HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCHHHH
Confidence 468999999999988 789999999999999764 49999999986 79999999999998875
No 10
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=40.35 E-value=10 Score=25.78 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=15.8
Q ss_pred CCCCCcceEEeeCCCcccCcc
Q 030198 92 LLPSPTDLHLFKEGIRPLWED 112 (181)
Q Consensus 92 ~L~~~~~~~lFK~gI~P~WED 112 (181)
.|..++.+|+||+|--.| ||
T Consensus 11 ~LkDGstvyiFKDGKMam-Ed 30 (74)
T 2k0q_A 11 DLQDGSKVHVFKDGKMGM-EN 30 (74)
T ss_dssp EBTTSCEEEEETTSCEEE-EC
T ss_pred ecCCCcEEEEEcCCceeh-hh
Confidence 578899999999996543 44
No 11
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=28.59 E-value=18 Score=19.35 Aligned_cols=12 Identities=33% Similarity=0.925 Sum_probs=9.1
Q ss_pred CCCcccCccCCC
Q 030198 104 EGIRPLWEDSAN 115 (181)
Q Consensus 104 ~gI~P~WEDp~N 115 (181)
+..+|-|||.+.
T Consensus 13 dkyepfwedee~ 24 (26)
T 1nrp_R 13 DKYEPFWEDEEX 24 (26)
T ss_pred cccCcccccccc
Confidence 357899999753
No 12
>3hki_C Proteinase-activated receptor 1; serine protease, acute phase, blood coagulation, cleavage on basic residues, disulfide bond; HET: NAG; 2.20A {Homo sapiens} PDB: 3hkj_C*
Probab=25.67 E-value=29 Score=18.04 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=8.0
Q ss_pred CCCcccCccC
Q 030198 104 EGIRPLWEDS 113 (181)
Q Consensus 104 ~gI~P~WEDp 113 (181)
+|.+|+|||.
T Consensus 9 ~~fEp~~~de 18 (21)
T 3hki_C 9 DKYEPFWEDE 18 (26)
T ss_pred cccccccccc
Confidence 4788999984
No 13
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=24.15 E-value=23 Score=19.14 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=8.6
Q ss_pred CCCcccCccCC
Q 030198 104 EGIRPLWEDSA 114 (181)
Q Consensus 104 ~gI~P~WEDp~ 114 (181)
+..+|-|||.+
T Consensus 13 dkyepfwedee 23 (27)
T 1nro_R 13 DKYEPFWEDEE 23 (27)
T ss_pred cccCccccchh
Confidence 35689999974
Done!