BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030200
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron
Splicing Factor Crs2
Length = 205
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 109/156 (69%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG+KY GTRHNVGFEM+D A +GI+MNT+ K+ G G +G+ PVL+ K
Sbjct: 17 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
PQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+ +
Sbjct: 77 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 136
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
G REF RL IGIG PPG+MDP+AFLLQKF++ R
Sbjct: 137 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172
>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2
Length = 212
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 108/156 (69%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG+KY GTRHNVGFEM+D A +GI+MNT K+ G G +G+ PVL+ K
Sbjct: 17 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVVK 76
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
PQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+ +
Sbjct: 77 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 136
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
G REF RL IGIG PPG+MDP+AFLLQKF++ R
Sbjct: 137 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172
>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing
Factor Crs2
Length = 202
Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 108/156 (69%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG+KY GTRHNVGFEM+D A +GI+MNT K+ G G +G+ PVL+ K
Sbjct: 5 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVK 64
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
PQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+ +
Sbjct: 65 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 124
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
G REF RL IGIG PPG+MDP+AFLLQKF++ R
Sbjct: 125 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 160
>pdb|2LGJ|A Chain A, Solution Structure Of Mspth
Length = 191
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 89/161 (55%), Gaps = 4/161 (2%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
+A P L VGLGNPG Y TRHN+GF + D A G S VH K A G +
Sbjct: 1 MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTS 59
Query: 73 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 132
V+LAKP+ YMN SG GPLA +Y +P +++V HD++ + G +
Sbjct: 60 VVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLR 119
Query: 133 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
SV + G + F R+RIG+GRPPG+ DP AF+L+ F A R
Sbjct: 120 SVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAER 159
>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis
pdb|3KK0|A Chain A, Crystal Structure Of Partially Folded Intermediate State
Of Peptidyl- Trna Hydrolase From Mycobacterium Smegmatis
pdb|3P2J|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis At 2.2 A Resolution
Length = 191
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
+A P L VGLGNPG Y TRHN+GF + D A G S VH K A G +
Sbjct: 1 MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTT 59
Query: 73 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 132
V+LAKP+ MN SG GPLA +Y +P +++V HD++ + G +
Sbjct: 60 VVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLR 119
Query: 133 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
SV + G + F R+RIG+GRPPG+ DP AF+L+ F + R
Sbjct: 120 SVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAER 159
>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis H37rv
Length = 204
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPV 73
+A P L VGLGNPG Y TRHN+GF + D A G A G +
Sbjct: 1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60
Query: 74 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 133
+LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +S
Sbjct: 61 VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRS 120
Query: 134 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
V+ G ++F R+RIGIGRPPG+ DP AF+L+ F R
Sbjct: 121 VVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAER 159
>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|A Chain A, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|B Chain B, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2K|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|3TCK|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 4
pdb|3TCN|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TCN|B Chain B, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TD2|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 5
pdb|3TD6|A Chain A, Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis
From Trigonal Partially Dehydrated Crystal
Length = 191
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPV 73
+A P L VGLGNPG Y TRHN+GF + D A G A G +
Sbjct: 1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60
Query: 74 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 133
+LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +S
Sbjct: 61 VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRS 120
Query: 134 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
V+ G ++F R+RIGIGRPPG+ DP AF+L+ F R
Sbjct: 121 VVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAER 159
>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From
Burkholderia Thailandensis
Length = 222
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
L VGLGNPG +Y TRHN GF ++D A G ++ + + + + V L +P
Sbjct: 25 LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEP 84
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
QTYMN SG+S LA ++K+ N +LV HD++ LP G K + +
Sbjct: 85 QTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL 144
Query: 139 RGNREFARLRIGIGRP 154
++++ RLRIGIG P
Sbjct: 145 -SSQQYWRLRIGIGHP 159
>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DHW|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DJJ|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4DJJ|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4ERX|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4ERX|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4FNO|A Chain A, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
pdb|4FNO|B Chain B, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
Length = 194
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVL 74
L VGLGNPG +Y TRHN G ++ A +QG+S+ V + F G VG V
Sbjct: 6 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYF--GLVGKFSHQGKDVR 61
Query: 75 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 134
L P TYMN SG+S LA ++++ + +LV HD++ +P GV + +
Sbjct: 62 LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDI 121
Query: 135 MNNFRGNREFARLRIGIGRP 154
+ F RLR+GIG P
Sbjct: 122 IAQLGNQNSFHRLRLGIGHP 141
>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase
Length = 199
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVL 74
L VGLGNPG +Y TRHN G ++ A +QG+S+ V + F G VG V
Sbjct: 12 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYF--GLVGKFSHQGKDVR 67
Query: 75 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 134
L P TYMN SG+S LA ++++ + +LV HD++ +P GV + +
Sbjct: 68 LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDI 127
Query: 135 MNNFRGNREFARLRIGIGRP 154
+ F RLR+GIG P
Sbjct: 128 IAQLGNQNSFHRLRLGIGHP 147
>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Acinetobacter Baumannii At 1.86 A Resolution
pdb|4FOT|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 2.20 A Resolution
pdb|4HOY|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 1.78 A Resolution
pdb|4IKO|A Chain A, Structure Of Peptidyl- Trna Hydrolase From Acinetobacter
Baumannii At 1.90 A Resolution
Length = 193
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
L VGLGNPG +Y TRHN GF ++ A+ GI++ N G+G + V L P
Sbjct: 6 LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
TYMN SG+S P + +Y++ +L+ HD++ + GV + ++ +
Sbjct: 66 MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI 125
Query: 139 RGNREFARLRIGIGRP 154
N F RLRIGIG P
Sbjct: 126 GPN--FHRLRIGIGHP 139
>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli
Length = 193
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
L VGL NPG +Y TRHN G +D AE + +A F + +G V L
Sbjct: 4 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 60
Query: 76 AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
P T+MNLSG++ +A+++++ + +LV HD++ LP GV K ++
Sbjct: 61 LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 120
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQK 167
+ N F RLRIGIG P + F+L K
Sbjct: 121 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGK 152
>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
pdb|3VJR|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
Length = 197
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
L VGL NPG +Y TRHN G +D AE + +A F + +G V L
Sbjct: 8 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 64
Query: 76 AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
P T+MNLSG++ +A+++++ + +LV HD++ LP GV K ++
Sbjct: 65 LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 124
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQK 167
+ N F RLRIGIG P + F+L K
Sbjct: 125 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGK 156
>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
Length = 211
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
L VGL NPG +Y TRHN G +D AE + +A F + +G V L
Sbjct: 25 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 81
Query: 76 AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
P T+MNLSG++ +A+++++ + +LV HD++ LP GV K ++
Sbjct: 82 LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 141
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQK 167
+ N F RLRIGIG P + F+L K
Sbjct: 142 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGK 173
>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Francisella Tularensis
Length = 207
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 7/165 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT---VHCKATFGQGFVGDAPVLLA 76
+ +GLGN G +Y+ TRHNVG I A+ S ++ ++C + + V+L
Sbjct: 25 MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNC--NLAKVSIDYNNVVLV 82
Query: 77 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 136
P TYMN SG + +A +YK+ +LV HD++ + G +S+ N
Sbjct: 83 FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSI-N 141
Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNNIL 181
G ++ RLRIGIG P + ++L +IA+++++++ +
Sbjct: 142 QHLGTNDYLRLRIGIGHPGHKSKVANYVLSN-PSIAQKKDIDSAI 185
>pdb|3S5T|A Chain A, Crystal Structure Of A Member Of Duf3298 Family (Bf2082)
From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
Length = 265
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 53 SMNTVHCKATFGQGFVGDAPVLLAKPQT 80
S+N+ A FG+G++G+ P + K T
Sbjct: 56 SLNSYFIAACFGEGYIGEKPAQVVKEYT 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,123,653
Number of Sequences: 62578
Number of extensions: 185634
Number of successful extensions: 408
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 17
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)