Query 030200
Match_columns 181
No_of_seqs 158 out of 1028
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pth_A Peptidyl-tRNA hydrolase 100.0 4.1E-73 1.4E-77 466.6 16.6 162 18-180 2-165 (193)
2 3nea_A PTH, peptidyl-tRNA hydr 100.0 8E-73 2.7E-77 468.8 17.4 163 17-180 22-185 (207)
3 2z2i_A PTH, peptidyl-tRNA hydr 100.0 3.1E-73 1.1E-77 466.7 14.7 163 17-180 3-166 (191)
4 1ryb_A CRS2; alpha-beta, hydro 100.0 1.4E-72 4.8E-77 466.9 17.5 167 14-180 13-179 (205)
5 4fyj_A PTH, peptidyl-tRNA hydr 100.0 6.4E-72 2.2E-76 461.2 16.8 162 18-180 10-173 (199)
6 3v2i_A PTH, peptidyl-tRNA hydr 100.0 2.1E-71 7.3E-76 464.4 16.7 165 15-180 20-195 (222)
7 4hoy_A PTH, peptidyl-tRNA hydr 100.0 3.7E-71 1.3E-75 455.0 17.0 162 17-180 3-165 (193)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 4.1E-73 1.4E-77 466.8 0.0 162 18-180 4-167 (194)
9 1cfz_A Hydrogenase 2 maturatio 50.7 16 0.00054 27.9 3.9 104 18-151 2-119 (162)
10 2jva_A Peptidyl-tRNA hydrolase 49.7 6.9 0.00024 28.6 1.6 41 104-152 2-44 (108)
11 3utn_X Thiosulfate sulfurtrans 41.3 26 0.00089 29.8 4.2 36 78-113 90-125 (327)
12 4dh9_Y YAEJ; ribosome, YAEJ, r 41.2 5.8 0.0002 30.3 0.1 41 104-152 2-44 (140)
13 2e85_A Hydrogenase 3 maturatio 41.1 26 0.00089 26.6 3.8 123 18-179 5-138 (159)
14 3pu6_A Uncharacterized protein 38.8 34 0.0011 26.0 4.1 126 18-179 4-137 (157)
15 2ba3_A NIKA; dimer, bacterial 32.1 21 0.00071 21.7 1.6 29 151-179 4-33 (51)
16 1c8b_A Spore protease; novel f 29.4 39 0.0013 29.8 3.4 93 15-123 111-214 (371)
17 3fzq_A Putative hydrolase; YP_ 24.7 43 0.0015 25.7 2.6 25 85-109 201-225 (274)
18 3r4c_A Hydrolase, haloacid deh 24.3 43 0.0015 25.9 2.5 24 86-109 196-219 (268)
19 2l32_A Small archaeal modifier 22.5 60 0.0021 21.5 2.7 31 86-116 20-50 (74)
20 3mpo_A Predicted hydrolase of 22.4 45 0.0015 25.9 2.3 25 85-109 198-222 (279)
21 3dnp_A Stress response protein 22.4 49 0.0017 25.9 2.5 25 85-109 203-227 (290)
22 3b64_A Macrophage migration in 22.2 63 0.0021 22.3 2.9 22 93-115 85-106 (112)
23 3ddh_A Putative haloacid dehal 22.1 60 0.0021 23.5 2.9 29 85-113 159-189 (234)
24 3dao_A Putative phosphatse; st 22.0 50 0.0017 26.1 2.5 25 85-109 212-236 (283)
25 4dw8_A Haloacid dehalogenase-l 21.9 46 0.0016 25.8 2.3 24 86-109 199-222 (279)
26 2pq0_A Hypothetical conserved 21.8 43 0.0015 25.9 2.1 24 86-109 185-208 (258)
27 3pgv_A Haloacid dehalogenase-l 21.5 51 0.0018 26.0 2.5 25 85-109 210-234 (285)
28 3l7y_A Putative uncharacterize 20.9 53 0.0018 26.2 2.5 24 86-109 230-253 (304)
No 1
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=4.1e-73 Score=466.62 Aligned_cols=162 Identities=37% Similarity=0.635 Sum_probs=154.1
Q ss_pred CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 96 (181)
Q Consensus 18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~ 96 (181)
|+|||||||||++|+.||||||||++|+||++++.+++ +.++.+.++++.+.+++++|+||+||||+||++|+++++||
T Consensus 2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y 81 (193)
T 2pth_A 2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81 (193)
T ss_dssp CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence 78999999999999999999999999999999999986 55788999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcC-CCCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200 97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRG-NREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (181)
Q Consensus 97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~g-t~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~ 175 (181)
|++++++||||||||||+|++|+|.+||++||||||||+++| | |++|+|||||||||.++.++++|||++|+++|++.
T Consensus 82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-g~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 160 (193)
T 2pth_A 82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL-GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL 160 (193)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHT-TSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999 6 89999999999999644568999999999999999
Q ss_pred HHhhh
Q 030200 176 ELNNI 180 (181)
Q Consensus 176 l~~~~ 180 (181)
|++++
T Consensus 161 l~~~i 165 (193)
T 2pth_A 161 IDEAI 165 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 2
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=8e-73 Score=468.80 Aligned_cols=163 Identities=34% Similarity=0.612 Sum_probs=156.3
Q ss_pred CCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 030200 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (181)
Q Consensus 17 ~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~ 95 (181)
.|+|||||||||++|+.|||||||+++|+||++++.++.+. +|.+.++++.+.+++++|+||+||||+||++|+++++|
T Consensus 22 ~~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~ 101 (207)
T 3nea_A 22 KIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANF 101 (207)
T ss_dssp CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHH
T ss_pred CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHH
Confidence 47999999999999999999999999999999999998765 68899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (181)
Q Consensus 96 ~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~ 175 (181)
||++++++||||||||||+|++|+|++||++||||||||+++| ||+||+|||||||||+++.++++|||++|+++|++.
T Consensus 102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~ 180 (207)
T 3nea_A 102 YKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKD 180 (207)
T ss_dssp HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred hCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 599999999999999877789999999999999999
Q ss_pred HHhhh
Q 030200 176 ELNNI 180 (181)
Q Consensus 176 l~~~~ 180 (181)
|++++
T Consensus 181 l~~~i 185 (207)
T 3nea_A 181 IDSAI 185 (207)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 3
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=3.1e-73 Score=466.66 Aligned_cols=163 Identities=44% Similarity=0.823 Sum_probs=154.5
Q ss_pred CCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 030200 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (181)
Q Consensus 17 ~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~ 95 (181)
.|+|||||||||++|+.|||||||+++|+||++++.++.+ .++.+.++++.+.+++++|+||+||||+||++|+++++|
T Consensus 3 ~m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~ 82 (191)
T 2z2i_A 3 EPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKF 82 (191)
T ss_dssp SCEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHH
T ss_pred ccEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHH
Confidence 4799999999999999999999999999999999998865 468899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (181)
Q Consensus 96 ~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~ 175 (181)
||++++++||||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.
T Consensus 83 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 161 (191)
T 2z2i_A 83 YSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAE 161 (191)
T ss_dssp TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTT
T ss_pred hCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 699999999999999655679999999999999999
Q ss_pred HHhhh
Q 030200 176 ELNNI 180 (181)
Q Consensus 176 l~~~~ 180 (181)
|++++
T Consensus 162 l~~~i 166 (191)
T 2z2i_A 162 VPTIC 166 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 4
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=1.4e-72 Score=466.87 Aligned_cols=167 Identities=57% Similarity=1.062 Sum_probs=157.2
Q ss_pred CCCCCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHH
Q 030200 14 AVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA 93 (181)
Q Consensus 14 ~~~~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~ 93 (181)
++..++|||||||||++|+.|||||||+++|+||+++++++++.++.+.++++.+.+++++|+||+||||+||++|++++
T Consensus 13 ~~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~ 92 (205)
T 1ryb_A 13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA 92 (205)
T ss_dssp --CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred CCCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence 45678999999999999999999999999999999999998877889999999999999999999999999999999999
Q ss_pred HHcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHH
Q 030200 94 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173 (181)
Q Consensus 94 ~~~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~ 173 (181)
+|||++++++||||||||||+|++|+|.+||++||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|+
T Consensus 93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~ 172 (205)
T 1ryb_A 93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172 (205)
T ss_dssp HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence 99999999999999999999999999999999999999999999933899999999999997556799999999999999
Q ss_pred HHHHhhh
Q 030200 174 ERELNNI 180 (181)
Q Consensus 174 ~~l~~~~ 180 (181)
+.|++++
T Consensus 173 ~~l~~~i 179 (205)
T 1ryb_A 173 VQIDTAL 179 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 5
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=6.4e-72 Score=461.22 Aligned_cols=162 Identities=38% Similarity=0.656 Sum_probs=154.2
Q ss_pred CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 96 (181)
Q Consensus 18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~ 96 (181)
.-|||||||||++|+.|||||||+++|+||++++.++.+ .+|.+.++++.+.+++++|+||+||||+||++|+++++||
T Consensus 10 ~~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y 89 (199)
T 4fyj_A 10 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF 89 (199)
T ss_dssp CCEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHT
T ss_pred eeEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHh
Confidence 459999999999999999999999999999999998764 4688999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCC-CccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200 97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNR-EFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (181)
Q Consensus 97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~-~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~ 175 (181)
+++++++||||||||||+|++|+|++||++||||||||+++| ||+ ||+|||||||||+.+.++++|||++|+++|++.
T Consensus 90 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 168 (199)
T 4fyj_A 90 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL 168 (199)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred CCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHH
Confidence 999999999999999999999999999999999999999999 587 999999999999877789999999999999999
Q ss_pred HHhhh
Q 030200 176 ELNNI 180 (181)
Q Consensus 176 l~~~~ 180 (181)
|++++
T Consensus 169 l~~~i 173 (199)
T 4fyj_A 169 LDTSI 173 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 6
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=2.1e-71 Score=464.40 Aligned_cols=165 Identities=38% Similarity=0.639 Sum_probs=152.5
Q ss_pred CCCCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHH
Q 030200 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA 93 (181)
Q Consensus 15 ~~~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~ 93 (181)
+..|+|||||||||++|+.|||||||+++|+||++++.++.+. +|.+.++++.+.+++++|+||+||||+||++|++++
T Consensus 20 ~m~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~ 99 (222)
T 3v2i_A 20 GSMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALA 99 (222)
T ss_dssp --CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred CceEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHH
Confidence 3457899999999999999999999999999999999998653 688999999999999999999999999999999999
Q ss_pred HHcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCC----------CCCCCcccc
Q 030200 94 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRP----------PGQMDPKAF 163 (181)
Q Consensus 94 ~~~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP----------~~~~~~~~y 163 (181)
+|||++++++||||||||||+|++|+|.+||++||||||||+++| ||++|+||||||||| +.+.++++|
T Consensus 100 ~~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~y 178 (222)
T 3v2i_A 100 HFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANF 178 (222)
T ss_dssp HHHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHH
T ss_pred HHhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHH
Confidence 999999999999999999999999999999999999999999999 689999999999999 555688999
Q ss_pred cCCCCCHHHHHHHHhhh
Q 030200 164 LLQKFNAIARERELNNI 180 (181)
Q Consensus 164 VL~~f~~~E~~~l~~~~ 180 (181)
||++|+++|++.|++++
T Consensus 179 VL~~fs~~E~~~l~~~i 195 (222)
T 3v2i_A 179 VLKPPRKEEQDVIDAAI 195 (222)
T ss_dssp TTSCCCHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHH
Confidence 99999999999998765
No 7
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=3.7e-71 Score=455.01 Aligned_cols=162 Identities=38% Similarity=0.683 Sum_probs=154.0
Q ss_pred CCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 030200 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (181)
Q Consensus 17 ~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~ 95 (181)
.++|||||||||++|++|||||||+++|+||++++.+++. .++.+.++++.+.+++++|+||+||||+||+||+++++|
T Consensus 3 ~ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~ 82 (193)
T 4hoy_A 3 NISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKF 82 (193)
T ss_dssp CCCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred CceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHH
Confidence 3579999999999999999999999999999999999854 477889999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (181)
Q Consensus 96 ~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~ 175 (181)
|+++++++||||||||||+|++|+|++||++||||||||+++| || ||+|||||||||+++.++++|||++|+++|++.
T Consensus 83 ~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 160 (193)
T 4hoy_A 83 YQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSL 160 (193)
T ss_dssp TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHH
T ss_pred cCCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 56 799999999999988889999999999999999
Q ss_pred HHhhh
Q 030200 176 ELNNI 180 (181)
Q Consensus 176 l~~~~ 180 (181)
|++++
T Consensus 161 l~~~i 165 (193)
T 4hoy_A 161 MDGAI 165 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=4.1e-73 Score=466.83 Aligned_cols=162 Identities=38% Similarity=0.652 Sum_probs=152.8
Q ss_pred CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 96 (181)
Q Consensus 18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~ 96 (181)
|+|||||||||++|+.|||||||+++|+||++++.++. +.++.+.++++.+.+++++|+||+||||+||++|+++++||
T Consensus 4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fy 83 (194)
T 4fno_A 4 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF 83 (194)
Confidence 57999999999999999999999999999999999876 45688889988888899999999999999999999999999
Q ss_pred CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCC-CCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200 97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGN-REFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (181)
Q Consensus 97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt-~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~ 175 (181)
||+++++||||||||||+|++|+|.+||++||||||||+++| || ++|+|||||||||.++.++++|||++|+++|++.
T Consensus 84 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 162 (194)
T 4fno_A 84 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL 162 (194)
Confidence 999999999999999999999999999999999999999999 58 8999999999999645579999999999999999
Q ss_pred HHhhh
Q 030200 176 ELNNI 180 (181)
Q Consensus 176 l~~~~ 180 (181)
|++++
T Consensus 163 l~~~i 167 (194)
T 4fno_A 163 LDTSI 167 (194)
Confidence 98765
No 9
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=50.74 E-value=16 Score=27.86 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=57.0
Q ss_pred CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 030200 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK 97 (181)
Q Consensus 18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~k 97 (181)
+.+|+|+|||= ..-==+|..++++|++++..+. .+-++--.| .|..+...+
T Consensus 2 ~ilVlGiGN~l----~gDDG~G~~v~~~L~~~~~~p~-----------------~v~vid~gt----~~~~l~~~l---- 52 (162)
T 1cfz_A 2 RILVLGVGNIL----LTDEAIGVRIVEALEQRYILPD-----------------YVEILDGGT----AGMELLGDM---- 52 (162)
T ss_dssp CEEEEEESCTT----BGGGGHHHHHHHHHHHHEECCT-----------------TEEEEEEET----CCGGGHHHH----
T ss_pred CEEEEEECCcc----cccccHHHHHHHHHHhhCCCCC-----------------CeEEEECCC----CHHHHHHHH----
Confidence 47899999993 2233699999999998753320 111111111 122111111
Q ss_pred CCCCcEEEEee---cCCCCCceEEEecC--------CCCCCCC-chhhHHHhhcCCCCcc-EE-EEcc
Q 030200 98 LPLNRVLVFHD---DMGLPCGVLRLRHN--------GGHGGHN-GLKSVMNNFRGNREFA-RL-RIGI 151 (181)
Q Consensus 98 i~~~~ilVvhD---dldl~~G~vrlk~~--------Gs~~GHN-GlkSI~~~l~gt~~f~-Rl-rIGI 151 (181)
.-.+.+||-| +.+.++|+++.-.. .+...|+ |+..+.+.+.-..+++ ++ =|||
T Consensus 53 -~~~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi 119 (162)
T 1cfz_A 53 -ANRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV 119 (162)
T ss_dssp -SSCSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE
T ss_pred -hCCCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEE
Confidence 1236667778 56889999886321 1233454 7777776652112344 33 4577
No 10
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=49.72 E-value=6.9 Score=28.61 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=29.8
Q ss_pred EEEeecCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCccEEEEccc
Q 030200 104 LVFHDDMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGIG 152 (181)
Q Consensus 104 lVvhDdldl~~G~vrlk--~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIG 152 (181)
+.+.+++++|...++++ +.+|+||.|= ..++.=.||+.=+.
T Consensus 2 l~i~~~i~I~~~dl~~~~~RssGpGGQnV--------NKv~SaV~L~~d~~ 44 (108)
T 2jva_A 2 LVISNNVHLPDAEIELTAIRAQGAGGQNV--------NKVSSAMHLRFDIN 44 (108)
T ss_dssp EECSSSCEECGGGEEEEECCCTTCSSSSS--------CCCCCCEEEEEETT
T ss_pred cccccccccChHHEEEEEEECCCCCCCCc--------CCCcceEEEEEEcc
Confidence 45678899999988887 5788999872 12444578887663
No 11
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=41.26 E-value=26 Score=29.81 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=29.0
Q ss_pred CCCcccccchhHHHHHHHcCCCCCcEEEEeecCCCC
Q 030200 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLP 113 (181)
Q Consensus 78 P~TyMN~SG~aV~~~~~~~ki~~~~ilVvhDdldl~ 113 (181)
|...|=-|-+...+.++.++|..++.||||||-+.-
T Consensus 90 ~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~ 125 (327)
T 3utn_X 90 PYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNF 125 (327)
T ss_dssp SSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSS
T ss_pred CCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 344566677788888999999999999999997653
No 12
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=41.24 E-value=5.8 Score=30.30 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=29.0
Q ss_pred EEEeecCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCccEEEEccc
Q 030200 104 LVFHDDMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGIG 152 (181)
Q Consensus 104 lVvhDdldl~~G~vrlk--~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIG 152 (181)
+.|.+++++|...+++. +.+|+||+|= ..++.=.+|++=|.
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQnV--------NKv~SaV~L~~~~~ 44 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQHV--------NKTSTAIHLRFDIR 44 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHHH--------HTTCCCEEEEECCS
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCcc--------ccccceEEEEEecc
Confidence 45788999999988887 5778899662 12344577777553
No 13
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=41.13 E-value=26 Score=26.60 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=66.2
Q ss_pred CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCC-CcccccchhHHHHHHHc
Q 030200 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ-TYMNLSGESTGPLAAYY 96 (181)
Q Consensus 18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~-TyMN~SG~aV~~~~~~~ 96 (181)
+.+|+|+|||= ..-==+|..++++|++.+ . . .+-++--. .-||+-. .+.. +
T Consensus 5 ~~lVlGiGN~l----~gDDG~G~~v~~~L~~~~-~--~----------------~v~vid~gt~~~~l~~----~l~~-~ 56 (159)
T 2e85_A 5 TDVLLCVGNSM----MGDDGAGPLLAEKCAAAP-K--G----------------NWVVIDGGSAPENDIV----AIRE-L 56 (159)
T ss_dssp CEEEEEECCGG----GGGGGHHHHHHHHHHHSC-C--T----------------TCEEEECTTCSGGGHH----HHHH-H
T ss_pred CEEEEEECCcc----cccccHHHHHHHHHhhhC-C--C----------------CeEEEECCCCHHHHHH----HHhc-C
Confidence 36999999993 123369999999998742 0 0 11122211 1233321 2222 1
Q ss_pred CCCCCcEEEEee--cCCCCCceEEEec------CCC-CCCCCchhhHHHhhcCCCCccEEE-EcccCCCCCCCcccccCC
Q 030200 97 KLPLNRVLVFHD--DMGLPCGVLRLRH------NGG-HGGHNGLKSVMNNFRGNREFARLR-IGIGRPPGQMDPKAFLLQ 166 (181)
Q Consensus 97 ki~~~~ilVvhD--dldl~~G~vrlk~------~Gs-~~GHNGlkSI~~~l~gt~~f~Rlr-IGIGrP~~~~~~~~yVL~ 166 (181)
. .+.+||-| +.+.++|+++.-. .-+ +...-|+..+.+.+. .+..++. ||| .|.. + +| =.
T Consensus 57 --~-~d~lIiVDA~~~g~~PGti~~~~~~~l~~~~~~s~H~~~l~~~L~~l~--~~~p~v~liGi-~p~~---~-~~-g~ 125 (159)
T 2e85_A 57 --R-PTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK--EDIGEVIFLGI-QPDI---V-GF-YY 125 (159)
T ss_dssp --C-CSEEEEEEECCCSSCTTCEEECCHHHHHHTTCBCTTCCBHHHHHHHHH--HHHSEEEEEEE-CCSC---C-CT-TC
T ss_pred --C-CCEEEEEEeCCCCCCCCEEEEechhHcccccCCCCCcCCHHHHHHHHh--CCCCcEEEEEE-EEeE---c-CC-CC
Confidence 2 24555556 4678899998532 122 334448999998884 2344543 477 3432 2 22 12
Q ss_pred CCCHHHHHHHHhh
Q 030200 167 KFNAIARERELNN 179 (181)
Q Consensus 167 ~f~~~E~~~l~~~ 179 (181)
..|++=++.++++
T Consensus 126 ~LS~~v~~av~~a 138 (159)
T 2e85_A 126 PMTQPIKDAVETV 138 (159)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4566555555544
No 14
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=38.84 E-value=34 Score=25.98 Aligned_cols=126 Identities=13% Similarity=0.044 Sum_probs=60.0
Q ss_pred CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 030200 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK 97 (181)
Q Consensus 18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~k 97 (181)
+.||+|+|||= ..-==+|..++++|++.+ + .+.++--.| .|..+...++..
T Consensus 4 ~ilVlGiGN~L----~gDDG~G~~v~~~L~~~~--p------------------~v~vid~Gt----~~~~l~~~l~~~- 54 (157)
T 3pu6_A 4 KKVLLCVGNEL----RGDDGVAIALGRLVEEQM--P------------------EWSVFFGYD----TPESEFGKLREL- 54 (157)
T ss_dssp CEEEEEECCTT----BGGGGHHHHHHHHHHHHC--T------------------TEEEEEEET----CGGGGHHHHHHH-
T ss_pred CEEEEEECCcc----cccccHHHHHHHHHHhhC--C------------------CeEEEECCC----CHHHHHHHHHhc-
Confidence 47899999993 233468999999998432 1 011111111 222222222221
Q ss_pred CCCCcEEEEeec-CCCCCceEEEecCC------CCCCCCchhhHHHhhcCCCCccEEE-EcccCCCCCCCcccccCCCCC
Q 030200 98 LPLNRVLVFHDD-MGLPCGVLRLRHNG------GHGGHNGLKSVMNNFRGNREFARLR-IGIGRPPGQMDPKAFLLQKFN 169 (181)
Q Consensus 98 i~~~~ilVvhDd-ldl~~G~vrlk~~G------s~~GHNGlkSI~~~l~gt~~f~Rlr-IGIGrP~~~~~~~~yVL~~f~ 169 (181)
..+. +||-|= .+.++|+++.-..- -+...-|+..+.+.+.. ...++. |||- |.. .+..+|- ...|
T Consensus 55 -~~d~-lIiVDA~~g~~PGti~~~~~~~~~~~~~s~H~~~l~~~L~~l~~--~~p~v~liGie-p~~-~~~~~~g-~~LS 127 (157)
T 3pu6_A 55 -APDV-IVVADAMSGFKEGEIEFLDLSDERTYLYSTHNLPTPILISYLRG--ICSKTIFLGIS-VLL-ENVLHFS-EGLS 127 (157)
T ss_dssp -CCSE-EEEEEEEEC----CEEEEETTSHHHHHC-----CCHHHHHHHHH--HCSEEEEEEEE-ECG-GGGSSCB-CSCC
T ss_pred -CCCE-EEEEEecCCCCCcEEEEEchhHhcCCCCCCCCCCHHHHHHHHHc--cCCCEEEEEEE-Eee-cCCCCCC-CCCC
Confidence 2344 444443 47789999875432 23455688888888742 234544 4554 321 1112332 2566
Q ss_pred HHHHHHHHhh
Q 030200 170 AIARERELNN 179 (181)
Q Consensus 170 ~~E~~~l~~~ 179 (181)
++=++.++++
T Consensus 128 ~~V~~av~~a 137 (157)
T 3pu6_A 128 QGASDSAFVA 137 (157)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 15
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=32.10 E-value=21 Score=21.72 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=19.4
Q ss_pred ccCCCCCCCccc-ccCCCCCHHHHHHHHhh
Q 030200 151 IGRPPGQMDPKA-FLLQKFNAIARERELNN 179 (181)
Q Consensus 151 IGrP~~~~~~~~-yVL~~f~~~E~~~l~~~ 179 (181)
.|||.+.....+ .+-=+++++|.+.|++.
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~ 33 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKK 33 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHH
Confidence 578865322333 34458999999999764
No 16
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2
Probab=29.42 E-value=39 Score=29.75 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=55.5
Q ss_pred CCCCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEE--CCeeEEEEeC----CCcccccchh
Q 030200 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFV--GDAPVLLAKP----QTYMNLSGES 88 (181)
Q Consensus 15 ~~~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~--~~~~v~L~kP----~TyMN~SG~a 88 (181)
.....|||||||.. -|--..|-.+++.|. ++ ..-+. ++...+ .-..|.-+-| +|=||. ++.
T Consensus 111 ~~~~iLVVGLGN~~----vTpDALGP~Vv~~l~----vT--rHl~~--~g~~~~~~~~~pVsAiaPGVmg~TGiEt-~Ei 177 (371)
T 1c8b_A 111 DDASCLVVGLGNLS----VTPDALGPKAVDNLL----IT--RHLFE--LQPESVQDGFRPVSAIVPGVMGMTGIET-SDI 177 (371)
T ss_dssp TTCCEEEEECSCSS----SGGGCHHHHHHTTCC----CC--HHHHH--HSCCSSCSSCCCEEEECSGGGCCCSSCH-HHH
T ss_pred CCCcEEEEEcCCCC----cCccccCcceeeeee----EE--eehhh--hCchhhccCCCceEEecCCccccccccH-HHH
Confidence 34568999999974 689999999998663 11 10000 111001 1235666666 455664 355
Q ss_pred HHHHHHHcCCCCCcEEEEeecCCC----CCc-eEEEecCC
Q 030200 89 TGPLAAYYKLPLNRVLVFHDDMGL----PCG-VLRLRHNG 123 (181)
Q Consensus 89 V~~~~~~~ki~~~~ilVvhDdldl----~~G-~vrlk~~G 123 (181)
++.+.+.++ .+++|.-|-|-. -+| +|++--.|
T Consensus 178 I~gIv~k~k---Pd~VIAIDALAars~~Rl~~TIQIsdTG 214 (371)
T 1c8b_A 178 IFGVVKKVN---PDFIIAIDALAARSIERVNATIQISDSG 214 (371)
T ss_dssp HHHHHHHHC---CSEEEEEEEECCSSGGGSSSEEEEETTC
T ss_pred HHHHHHhcC---CCEEEEEchhhcCcHhhcCCeEEECCCC
Confidence 666776665 467777787544 356 78877544
No 17
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=24.68 E-value=43 Score=25.74 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.8
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeec
Q 030200 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (181)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVvhDd 109 (181)
-|.++..+++.+++++++++++=|.
T Consensus 201 K~~~l~~l~~~lgi~~~~~i~~GD~ 225 (274)
T 3fzq_A 201 KGKAIKRLQERLGVTQKETICFGDG 225 (274)
T ss_dssp HHHHHHHHHHHHTCCSTTEEEECCS
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCC
Confidence 3677888999999999999999884
No 18
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=24.26 E-value=43 Score=25.87 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=21.9
Q ss_pred chhHHHHHHHcCCCCCcEEEEeec
Q 030200 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (181)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVvhDd 109 (181)
|.++..+++.+++++++++++=|.
T Consensus 196 ~~~l~~l~~~lgi~~~~~ia~GD~ 219 (268)
T 3r4c_A 196 ATGLSLFADYYRVKVSEIMACGDG 219 (268)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCc
Confidence 588899999999999999999995
No 19
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=22.50 E-value=60 Score=21.51 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=26.4
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecCCCCCce
Q 030200 86 GESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 116 (181)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVvhDdldl~~G~ 116 (181)
|..|+.+++.++++++.++|+-+.--+|...
T Consensus 20 g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 20 DGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp TCSHHHHHHTTCCCSSCCCEECCCCCCCTTS
T ss_pred CCcHHHHHHHcCCCcceEEEEECCEECCHHH
Confidence 5689999999999999998888887777665
No 20
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=22.42 E-value=45 Score=25.93 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.5
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeec
Q 030200 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (181)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVvhDd 109 (181)
-|.++..+++.+++++++++++=|.
T Consensus 198 K~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 3mpo_A 198 KGGTLSELVDQLGLTADDVMTLGDQ 222 (279)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEC--C
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4788899999999999999999884
No 21
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=22.36 E-value=49 Score=25.88 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.1
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeec
Q 030200 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (181)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVvhDd 109 (181)
-|.++..+++.+++++++++++=|.
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~ 227 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQ 227 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCc
Confidence 3678889999999999999999994
No 22
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=22.25 E-value=63 Score=22.34 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=18.4
Q ss_pred HHHcCCCCCcEEEEeecCCCCCc
Q 030200 93 AAYYKLPLNRVLVFHDDMGLPCG 115 (181)
Q Consensus 93 ~~~~ki~~~~ilVvhDdldl~~G 115 (181)
.+..+++++++.|+.+|++ .+|
T Consensus 85 ~~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 85 TKECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp HHHHCCCGGGEEEEEECCS-CCE
T ss_pred HHHhCcCcceEEEEEEEhh-Hee
Confidence 4457899999999999998 665
No 23
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=22.11 E-value=60 Score=23.50 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=25.2
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecC--CCC
Q 030200 85 SGESTGPLAAYYKLPLNRVLVFHDDM--GLP 113 (181)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVvhDdl--dl~ 113 (181)
++.++..+++.++++++++++|=|.+ |+.
T Consensus 159 k~~~~~~~~~~lgi~~~~~i~iGD~~~~Di~ 189 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELLMVGNSFKSDIQ 189 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEEESCCCCCCH
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCcHHHhH
Confidence 67888899999999999999999986 554
No 24
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=21.98 E-value=50 Score=26.10 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.0
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeec
Q 030200 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (181)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVvhDd 109 (181)
-|.++..+++.+++++++++++=|.
T Consensus 212 K~~~l~~l~~~lgi~~~e~ia~GD~ 236 (283)
T 3dao_A 212 KWTALSYLIDRFDLLPDEVCCFGDN 236 (283)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCC
Confidence 3668899999999999999999984
No 25
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=21.85 E-value=46 Score=25.83 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.1
Q ss_pred chhHHHHHHHcCCCCCcEEEEeec
Q 030200 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (181)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVvhDd 109 (181)
|.++..+++.+++++++++++=|.
T Consensus 199 ~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 4dw8_A 199 ALSLSVLLENIGMTREEVIAIGDG 222 (279)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCC
Confidence 788899999999999999999994
No 26
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=21.79 E-value=43 Score=25.85 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.3
Q ss_pred chhHHHHHHHcCCCCCcEEEEeec
Q 030200 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (181)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVvhDd 109 (181)
|.++..+++.+++++++++++=|.
T Consensus 185 ~~~l~~l~~~lgi~~~~~ia~GDs 208 (258)
T 2pq0_A 185 AEGIRMMIEKLGIDKKDVYAFGDG 208 (258)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCS
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc
Confidence 667889999999999999999884
No 27
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=21.53 E-value=51 Score=25.98 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.3
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeec
Q 030200 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (181)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVvhDd 109 (181)
-|.++..+++.+++++++++++=|.
T Consensus 210 K~~al~~l~~~lgi~~~~~ia~GD~ 234 (285)
T 3pgv_A 210 KGHALEAVAKMLGYTLSDCIAFGDG 234 (285)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred hHHHHHHHHHHhCCCHHHEEEECCc
Confidence 3778899999999999999999995
No 28
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=20.90 E-value=53 Score=26.21 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.5
Q ss_pred chhHHHHHHHcCCCCCcEEEEeec
Q 030200 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (181)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVvhDd 109 (181)
|.++..+++.++++++++++|=|.
T Consensus 230 ~~al~~l~~~lgi~~~e~i~~GDs 253 (304)
T 3l7y_A 230 GWALQQLLKRWNFTSDHLMAFGDG 253 (304)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHhCcCHHHEEEECCC
Confidence 558889999999999999999994
Done!