RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 030200
         (181 letters)



>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score =  154 bits (389), Expect = 2e-48
 Identities = 97/164 (59%), Positives = 125/164 (76%), Gaps = 1/164 (0%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 3   PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 62

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +
Sbjct: 63  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 122

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNNIL 181
             G REF RL IGIG PPG+MDP+AFLLQKF++  R  +++  L
Sbjct: 123 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERV-QIDTAL 165


>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
           [TaxId: 562]}
          Length = 193

 Score =  136 bits (344), Expect = 1e-41
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKP 78
           L VGL NPG +Y  TRHN G   +D  AE     +           +  +G   V L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
            T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNGLK +++  
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL 123

Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174
             N  F RLRIGIG P  +     F+L K     ++
Sbjct: 124 GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK 159


>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
           1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 267

 Score = 25.1 bits (54), Expect = 4.9
 Identities = 13/114 (11%), Positives = 33/114 (28%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
              +       + +        E+   +A+++      +    T           +L  P
Sbjct: 109 PTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSP 168

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLK 132
                          + + + L +++   +  GL   V+ +R  G H    G+ 
Sbjct: 169 TVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGIT 222


>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
           [TaxId: 1394]}
          Length = 208

 Score = 24.9 bits (54), Expect = 5.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 23  GLGNPGDKYKGTR 35
           GLG+ GD+  GT+
Sbjct: 196 GLGDAGDRLFGTK 208


>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
           [TaxId: 274]}
          Length = 208

 Score = 24.2 bits (52), Expect = 9.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 23  GLGNPGDKYKGTR 35
           GLG+ GD+  GT+
Sbjct: 196 GLGDAGDRIYGTK 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.143    0.448 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 699,962
Number of extensions: 30556
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 8
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.4 bits)