Query 030201
Match_columns 181
No_of_seqs 151 out of 848
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r90_A Malignant T cell-amplif 100.0 1.4E-55 4.7E-60 348.9 12.3 179 1-180 1-180 (188)
2 3d79_A PUA domain, putative un 100.0 6.6E-45 2.3E-49 285.9 13.9 165 8-179 8-178 (179)
3 2cx0_A Hypothetical protein AP 100.0 2E-42 6.8E-47 273.4 12.5 157 12-178 14-179 (187)
4 1q7h_A Conserved hypothetical 100.0 1.1E-40 3.7E-45 255.7 14.2 153 10-179 1-153 (153)
5 1iq8_A Archaeosine tRNA-guanin 99.9 5.9E-25 2E-29 198.8 8.5 143 19-171 435-582 (582)
6 3zv0_C H/ACA ribonucleoprotein 99.9 7.1E-25 2.4E-29 172.6 6.5 139 29-179 17-163 (195)
7 2q07_A Uncharacterized protein 99.9 3.6E-23 1.2E-27 174.1 12.1 128 19-174 168-301 (306)
8 2p38_A Protein involved in rib 99.6 5.3E-16 1.8E-20 119.9 4.7 136 14-174 8-164 (166)
9 3u28_A H/ACA ribonucleoprotein 99.2 3.4E-11 1.2E-15 103.9 7.3 85 90-179 265-354 (400)
10 1sqw_A Saccharomyces cerevisia 98.9 1.9E-08 6.5E-13 78.6 12.4 150 15-174 3-173 (188)
11 2j5v_A Glutamate 5-kinase; pro 98.6 4.7E-08 1.6E-12 83.9 7.4 63 90-157 274-337 (367)
12 2aus_C Pseudouridine synthase; 98.6 6.9E-08 2.4E-12 81.9 8.0 78 91-173 250-327 (334)
13 2apo_A Probable tRNA pseudouri 98.5 1.9E-07 6.5E-12 79.8 7.8 79 90-173 268-346 (357)
14 1r3e_A TRNA pseudouridine synt 87.5 0.91 3.1E-05 37.7 5.6 53 90-148 228-280 (309)
15 3c0k_A UPF0064 protein YCCW; P 84.4 1.1 3.7E-05 37.7 4.8 54 91-149 2-56 (396)
16 1k8w_A TRNA pseudouridine synt 81.5 2.6 8.9E-05 35.2 5.8 47 91-148 264-310 (327)
17 2as0_A Hypothetical protein PH 73.3 4.6 0.00016 33.8 5.1 54 92-150 2-56 (396)
18 1sgv_A TRNA pseudouridine synt 64.5 9.4 0.00032 31.7 5.0 44 91-148 236-279 (316)
19 4dmg_A Putative uncharacterize 62.4 8.7 0.0003 32.5 4.7 51 91-149 5-56 (393)
20 1hmj_A RPB5, protein (subunit 45.3 16 0.00055 24.0 2.7 28 89-136 32-59 (78)
21 1eik_A RNA polymerase subunit 41.9 13 0.00043 24.5 1.8 29 88-136 33-61 (77)
22 2oka_A Hypothetical protein; P 40.2 72 0.0025 21.9 5.6 52 22-84 23-74 (104)
23 2p0g_A Selenoprotein W-related 36.6 83 0.0028 21.6 5.5 52 22-84 21-72 (105)
24 4ayb_H DNA-directed RNA polyme 34.1 30 0.001 22.9 2.7 28 89-136 40-67 (84)
25 2ojl_A Hypothetical protein; B 30.6 89 0.0031 21.6 4.8 52 22-84 26-77 (108)
26 3dex_A SAV_2001; alpha-beta pr 27.9 1.4E+02 0.0049 20.5 5.5 51 22-84 30-80 (107)
27 2fa8_A Hypothetical protein AT 27.6 1.1E+02 0.0037 21.0 4.8 53 21-84 24-76 (105)
28 2hd9_A UPF0310 protein PH1033; 21.3 1E+02 0.0035 22.1 3.9 26 124-149 33-67 (145)
29 1dzf_A DNA-directed RNA polyme 21.0 51 0.0017 25.7 2.3 28 89-136 173-200 (215)
No 1
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-55 Score=348.90 Aligned_cols=179 Identities=55% Similarity=0.999 Sum_probs=167.3
Q ss_pred CCCCC-CCCCcccccccCHHHHHHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEECCEEEEEEecCCCcch
Q 030201 1 MFKKF-SAEEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMP 79 (181)
Q Consensus 1 MFkK~-~~~~~k~~~~l~~sd~kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~P 79 (181)
||||+ +..++|++++||+||+|+||+.+.+|||..++.+++|||+++.+++.|++++.++|++||+|+||+.++|.++|
T Consensus 1 MFkk~~~~~~vk~~~~lk~Sd~kkLr~~l~~qf~~~~~~~d~l~pkk~~v~~~k~~~~~~iy~~~~~pl~f~~~dg~l~P 80 (188)
T 3r90_A 1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYP 80 (188)
T ss_dssp CCTTCCHHHHEEEEEECCHHHHHHHHHHHHHHCGGGGGGHHHHSCTTSCEEEEEEGGGEEEEEETTEEEEEEETTCCCEE
T ss_pred CCCCCcCccCccccEeccHHHHHHHHHHHHHHcCCchhhHHhhCCCCCCEEEEEeCCeEEEEEECCEEEEEEeCCCeEec
Confidence 99996 22689999999999999999999999997656788999999999999999999999999999999998889999
Q ss_pred hhhhhhcCCCCccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHHhcCC
Q 030201 80 TLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAIN 159 (181)
Q Consensus 80 Tl~~l~~~p~~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i~~~~ 159 (181)
|||+||++|.++|+|+||++|+++|++|||||+|||++..+.+ ++|++||+|+|++++++.++|||++.||++||....
T Consensus 81 Tl~~l~~~p~~lp~v~Vd~~av~~v~~GA~Lm~PGv~~~~~~~-~~i~~Gd~V~V~~~~~~~~vAVG~a~mss~e~~~~~ 159 (188)
T 3r90_A 81 TLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKL-YPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVN 159 (188)
T ss_dssp CHHHHHHSGGGSCEEEECGGGHHHHTTTCCEETHHHHSTTCBC-CCCCTTCEEEEEETTCSSCSEEEEESSCHHHHHHHC
T ss_pred hHHHHhhCcccCCEEEEChhHHHHhhcCCccccCeEEccCCCc-ccccCCCEEEEEECCCCcEEEEEEEEeCHHHHhhcC
Confidence 9999999999999999999999999999999999999965544 489999999999987899999999999999999899
Q ss_pred cceEEEEEEEEcccccCCCcC
Q 030201 160 KGIGVDNMHYLNDGLWKMERL 180 (181)
Q Consensus 160 kG~av~~~h~~~D~Lw~~~~~ 180 (181)
+|+||+++|++||+||++++-
T Consensus 160 kG~aV~v~H~~~D~LW~~~~~ 180 (188)
T 3r90_A 160 KGIGIENIHYLNDGLWHMKTY 180 (188)
T ss_dssp CSEEEEEEEETTSHHHHHCBS
T ss_pred CcEEEEEEEEECchhhhcCCc
Confidence 999999999999999999863
No 2
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.6e-45 Score=285.88 Aligned_cols=165 Identities=25% Similarity=0.447 Sum_probs=151.4
Q ss_pred CCcccccccCHHHHHHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEECCEEEEEEecCCCcchhhhhhhcC
Q 030201 8 EEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLLHQY 87 (181)
Q Consensus 8 ~~~k~~~~l~~sd~kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l~~~ 87 (181)
+++|++++||+||+|+||+.+.+|||. +..++++|+++.+.+.|+.++.++|++||.|+||+. ++.++||+|++|++
T Consensus 8 ~~v~~~~~lk~sd~k~l~~~l~~qfg~--~~~~~l~p~k~~v~~~k~~~~~~~~~~dg~pl~f~~-dg~l~PTl~~l~~~ 84 (179)
T 3d79_A 8 MELKIKHPLSKKDVKEIIAQLSQMFGE--EIARKMLNKKDEVKVAEFDKTTEIILVNDKPMFIRR-KDLIFPLVIALYNL 84 (179)
T ss_dssp ----CCEECCHHHHHHHHHHHHHHHCH--HHHHHHCCTTSCEEEEEEETTEEEEEETTEEEEEEE-TTEEEECHHHHHHH
T ss_pred EeecccccCCHHHHHHHHHHHHHHhCC--CchHHhcCCCCcEEEEEcCCceEEEEECCEEEEEEe-CCeEeehHHHHHhC
Confidence 579999999999999999999999973 456778999999999999889999999999999995 67899999999999
Q ss_pred CCCc------cEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHHhcCCcc
Q 030201 88 PNIM------KKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKG 161 (181)
Q Consensus 88 p~~l------p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i~~~~kG 161 (181)
|..+ |+|+||++|+++|++|||||+|||++ .+++|++||+|+|++++++.++|+|++.+|++||....+|
T Consensus 85 p~~~p~~~~~~~v~vd~gA~~~l~~GasL~~~GV~~----~~g~f~~Gd~V~v~~~~~g~~iavG~~~~ss~e~~~~~kG 160 (179)
T 3d79_A 85 SDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVD----ADEGIKEGDFVFVVEEKYGRPLAIGIALMSGKVMKEKNRG 160 (179)
T ss_dssp TTTSCGGGSTTEEEECGGGHHHHHTTCCEEGGGEEE----ECTTCCTTCEEEEEETTTCCEEEEEEESSCHHHHHHCSSS
T ss_pred chhccccccCCEEEECccHHHHHhCCCCcCCCcEEE----ccCCccCCCEEEEEECCCCeEEEEEEEEcCHHHHHhcCCc
Confidence 9988 99999999999999999999999998 6778999999999997689999999999999999999999
Q ss_pred eEEEEEEEEcccccCCCc
Q 030201 162 IGVDNMHYLNDGLWKMER 179 (181)
Q Consensus 162 ~av~~~h~~~D~Lw~~~~ 179 (181)
+||+++|++||+||++++
T Consensus 161 ~av~~~H~~~D~Lw~~~~ 178 (179)
T 3d79_A 161 KAVKVIHHARDKIWEVTA 178 (179)
T ss_dssp EEEEEEEETTSHHHHHHC
T ss_pred eEEEEEEEeCCEEEEeec
Confidence 999999999999998764
No 3
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A
Probab=100.00 E-value=2e-42 Score=273.44 Aligned_cols=157 Identities=22% Similarity=0.436 Sum_probs=145.9
Q ss_pred cccccCHHHHHHHHHHHHhHCCCCcchhcccCCCCCcEEEEEe--eC-ceEEEEECCEEEEEEecCCCcchhhhhhhcCC
Q 030201 12 AQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKC--QN-HLNLVLVNNVPLFFNIRDGPYMPTLRLLHQYP 88 (181)
Q Consensus 12 ~~~~l~~sd~kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~--~~-~~~~y~~dg~pl~f~~~~~~~~PTl~~l~~~p 88 (181)
+.++||+||+|+||+.+.+|||. +++|+++.++++|+ .+ +.++|++||.|+||+.+++.++||+|++|++|
T Consensus 14 ~~~~lk~sd~k~Lr~~l~~qfg~------~l~p~k~~v~~~k~~t~~~~~~iy~~dg~pl~f~~~dg~l~PTl~~l~~~p 87 (187)
T 2cx0_A 14 EARALSKKERRSLLERLKPYYTR------IPFSEKADLRLVKARTDSGEYEIITVDGVPCLFEWSDGRIYPTLQCLKAFG 87 (187)
T ss_dssp EEEECCHHHHHHHHHHHTTTSSS------CCSCTTSCEEEEEEECSSCEEEEEEETTEEEEEECTTSCEEECHHHHHHHC
T ss_pred HhccCCHHHHHHHHHHHHHHcCc------cccCCCCcEEEEEecCCCccEEEEEECCEEEEEEeCCCeEEEEHHHHHhCC
Confidence 46789999999999999999982 57899999999999 44 78999999999999987788999999999999
Q ss_pred CC-cc-EEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHH----hcCCcce
Q 030201 89 NI-MK-KLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDI----KAINKGI 162 (181)
Q Consensus 89 ~~-lp-~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i----~~~~kG~ 162 (181)
.+ +| +|+||++|+++|++|||||+|||++ .+++|++||+|+|++++++.++|+|.+.+|++|| ..+.+|+
T Consensus 88 ~~~l~g~v~vd~gA~~al~~GasLl~~GV~~----~~g~f~~Gd~V~I~~~~~g~~iA~G~~~~ss~ei~~~~~~~~kG~ 163 (187)
T 2cx0_A 88 VDWLKGVVLVDKGAAIALAKGAHLMIPGVVG----VEGSFTRGDVVAALYHETRTPVMVGVAEVDSSALEKLYREKARGR 163 (187)
T ss_dssp STTSSEEEEECHHHHHHHHHTCCEEGGGEEE----EEECCCTTCEEEEEETTTTEEEEEEEESSCHHHHHHHHHHTCCSE
T ss_pred cccCCcEEEECccHHHHHhCCCCcCCCccEe----CCCCcCCCCEEEEEECCCCeEEEEEEEecCHHHHhHHHhccCCce
Confidence 87 78 9999999999999999999999998 6678999999999996679999999999999999 7789999
Q ss_pred EEEEEEEEcccccCCC
Q 030201 163 GVDNMHYLNDGLWKME 178 (181)
Q Consensus 163 av~~~h~~~D~Lw~~~ 178 (181)
|++++|++||+||+++
T Consensus 164 av~v~H~~gD~Lw~~~ 179 (187)
T 2cx0_A 164 AVRRVHRLGDALWELA 179 (187)
T ss_dssp EEEEEEETTSHHHHHH
T ss_pred EEEEEEEcCCeEEhhh
Confidence 9999999999999876
No 4
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=100.00 E-value=1.1e-40 Score=255.65 Aligned_cols=153 Identities=20% Similarity=0.392 Sum_probs=141.7
Q ss_pred cccccccCHHHHHHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEECCEEEEEEecCCCcchhhhhhhcCCC
Q 030201 10 VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPN 89 (181)
Q Consensus 10 ~k~~~~l~~sd~kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l~~~p~ 89 (181)
.|++++|++||+|+|++.+.+ || ++|+++.+.+.|+. +.++|++||+|+||+ ++.++||++++|++|.
T Consensus 1 ~k~~~~L~~se~k~l~~~l~~-~g--------~~~~~~~~~~~k~~-~~~~~~v~g~~l~f~--~g~~~ptl~~l~~l~~ 68 (153)
T 1q7h_A 1 MTSKHFISKKEAKRIWEQMSR-YG--------IDITGESLEVAAQK-SASAYYIGGKPMVFQ--AGDLIPSVYLLNYRNP 68 (153)
T ss_dssp --CCEECCHHHHHHHHHHHHT-TT--------CCCTTCCCEEEECS-SCEEEEETTEEEEEE--SSSEEECHHHHHHSCC
T ss_pred CCccccCCHHHHHHHHHHHHH-cC--------CccCCCcEEEEEeC-CcEEEEECCEEEEEE--CCeeeeehHHHhhCCc
Confidence 378899999999999999999 98 46777888889865 889999999999999 6789999999999999
Q ss_pred CccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEE
Q 030201 90 IMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHY 169 (181)
Q Consensus 90 ~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i~~~~kG~av~~~h~ 169 (181)
..|+|+||++|+++|++|||||+|||++ .+++|++||.|+|+++ ++.++|+|++.+|++||....+|+|++++|+
T Consensus 69 ~~~~v~vd~ga~~~l~~Ga~ll~~GV~~----~~~~~~~gd~V~V~~~-~g~~ia~G~~~~ss~e~~~~~~G~~v~v~h~ 143 (153)
T 1q7h_A 69 SRNIVTVDEGAEPHILNGSDLFAPGIVS----MDDSIRKGDMIFVKSS-KGYFIAVGMAEMDAGEVMATKRGKAARIIHF 143 (153)
T ss_dssp SSSEEEECTTTHHHHTTTCCEEGGGEEE----ECTTCCTTCEEEEEET-TSCEEEEEEESSCHHHHHHHCCSEEEEEEEC
T ss_pred cCCEEEECHhHHHHHHcCCCcCccccCc----ccCceeCCCEEEEEEC-CCCEEEEEEEecCHHHHHhcCCCeEEEEEEE
Confidence 9999999999999999999999999998 6778999999999995 7999999999999999998899999999999
Q ss_pred EcccccCCCc
Q 030201 170 LNDGLWKMER 179 (181)
Q Consensus 170 ~~D~Lw~~~~ 179 (181)
+||+||++++
T Consensus 144 ~~D~lw~~~~ 153 (153)
T 1q7h_A 144 PGDELIRAFP 153 (153)
T ss_dssp TTSHHHHHCC
T ss_pred cCCEEEEecC
Confidence 9999999875
No 5
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=99.91 E-value=5.9e-25 Score=198.80 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEECCEEEEEEe-cCCCcchhhhhhhcC----CCCccE
Q 030201 19 SVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNI-RDGPYMPTLRLLHQY----PNIMKK 93 (181)
Q Consensus 19 sd~kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl~f~~-~~~~~~PTl~~l~~~----p~~lp~ 93 (181)
.+.+.+++.+.+|||. ..+.++|+ ..+.++| ++++++|.+||+|++|.. ++|.++||++++++. |...++
T Consensus 435 ~~l~~i~~i~~~qFG~---~~~~l~~~-~~v~~~k-~~r~~~v~vdg~~l~~~~~~dg~~~ptl~g~~~~~~~~~~~~g~ 509 (582)
T 1iq8_A 435 DAIKYVMAIAEYQFGE---GASRAFDD-AKVELSK-TGMPRQVKVNGKRLATVRADDGLLTLGIEGAKRLHRVLPYPRMR 509 (582)
T ss_dssp THHHHHHHHHHHHHCT---TGGGGTTT-CEEEECS-SSCEEEEECSSSEEEEECTTTSCEEECHHHHHHHHHHSCTTTTE
T ss_pred HHHHHHHHHHHHHcCC---ChHHhCCC-cceeecc-cCceEEEEECCEEEEEEECCCCcEEecHHHHHHHHhhccCCCCE
Confidence 3445566677999994 26778887 6777888 889999999999998875 678899999998765 334579
Q ss_pred EEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEEEc
Q 030201 94 LQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLN 171 (181)
Q Consensus 94 v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i~~~~kG~av~~~h~~~ 171 (181)
|+||++|+++|++||+||+|||++ ++++|++||+|+|+++ ++.++|+|++.+|++||....+|+||+++|++.
T Consensus 510 v~VD~gA~~av~~GasLl~~GV~~----~~g~f~~Gd~V~V~~~-~g~~ia~G~a~~ss~ei~~~~kG~aV~v~~~~~ 582 (582)
T 1iq8_A 510 VVVNKEAEPFARKGKDVFAKFVIF----ADPGIRPYDEVLVVNE-NDELLATGQALLSGREMIVFQYGRAVKVRKGVE 582 (582)
T ss_dssp EEECTTTHHHHHTTCCEEGGGEEE----ECTTCCTTCEEEEECT-TCCEEEEEEESSCHHHHHHCCSSEEEEEEEECC
T ss_pred EEECchHHHHHhcCCCcCCCceEe----cCCCcCCCCEEEEEeC-CCCEEEEEEEeeCHHHHHhcCCceEEEEEeccC
Confidence 999999999999999999999999 6778999999999984 799999999999999999999999999999863
No 6
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.1e-25 Score=172.56 Aligned_cols=139 Identities=21% Similarity=0.324 Sum_probs=107.5
Q ss_pred HhHCCCCc-chhcccCCCCCcEEEEEeeCceEEEEECCEEEEEEecCCCc--chhhhhhhcCCCCccEEEECcchhhhhh
Q 030201 29 ADEYPGLE-PVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPY--MPTLRLLHQYPNIMKKLQVDRGAIKFVL 105 (181)
Q Consensus 29 ~~~f~~~~-~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~--~PTl~~l~~~p~~lp~v~v~~~a~~~i~ 105 (181)
.++|+.++ +++.+|+|+++.+... .+....|.....|++|++. ..+ +|.-++|+. +|+|+||++|+++|+
T Consensus 17 ~~~~psl~~~~~~~L~~nke~l~~~--~t~~~~~~~~~~~~k~~l~-~wI~~~P~E~aL~~----~g~VvVD~GAv~Al~ 89 (195)
T 3zv0_C 17 EAAGASTDTSEWPLLLKNFDKLLVR--SGHYTPIPAGSSPLKRDLK-SYISSGPLETLLVG----YKRIVVKDSAVNAVC 89 (195)
T ss_dssp ---------CCCCGGGSSGGGEEEC--CC---------CCCCCCHH-HHBCSSCGGGGGTT----SEEEEECHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHcCCHHHheee--eeEEEecCCCCChHHHHHH-HHHhhccHHHHhcc----CCeEEECHHHHHHHh
Confidence 45788664 6688899999977554 4556666665678877664 245 898888874 589999999999999
Q ss_pred cCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEEEcc-----cccCCCc
Q 030201 106 SGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLND-----GLWKMER 179 (181)
Q Consensus 106 ~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i~~~~kG~av~~~h~~~D-----~Lw~~~~ 179 (181)
+||+||+|||+. ++++|++||+|+|++ .++.++|+|++.+|++||...++|+||+++|+++| .+|.+|+
T Consensus 90 ~GaSLl~pGV~~----v~g~F~~GD~V~V~~-~~G~~IAvG~a~~sS~Ei~~~~kG~aVkv~rVimd~~~Yp~~W~~gp 163 (195)
T 3zv0_C 90 YGAKLMIPGLLR----YEEGIELYDEIVLIT-TKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGP 163 (195)
T ss_dssp TTCCEEGGGEEE----EETTCCTTCEEEEEC-TTCCEEEEEEESSCHHHHHHCSSSEEEEEEEECBCTTSSCCCCSSCC
T ss_pred cCCCccCCCcEe----cCCCcCCCCEEEEEc-CCCCEEEEEEEcCCHHHHhhcCCcEEEEEEEEEeCCCCcCcccccCc
Confidence 999999999999 677999999999998 46889999999999999999999999999999999 9999997
No 7
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=99.89 E-value=3.6e-23 Score=174.06 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCc--eEEEEECCEEEE-EEecCCCcchhh---hhhhcCCCCcc
Q 030201 19 SVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNH--LNLVLVNNVPLF-FNIRDGPYMPTL---RLLHQYPNIMK 92 (181)
Q Consensus 19 sd~kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~--~~~y~~dg~pl~-f~~~~~~~~PTl---~~l~~~p~~lp 92 (181)
.|...||+.+.+|||.. ||+ +++++ ..++++||+|++ |+.+++.++||+ ..|+++|. |
T Consensus 168 ~d~~~ir~i~~yqFG~~-------~~~-------~~~gr~p~~~v~vdg~~l~~~~~~dg~~~ptl~Ga~~l~~~~~--~ 231 (306)
T 2q07_A 168 LYRRILEHMLSYQFGIT-------WSG-------KVAGRYPELELLEGKKRLARVDRIYGMLDIYEKIAAYLLEKNI--Y 231 (306)
T ss_dssp HHHHHHHHHHHHHHSCC-------CCC-------EEESSTTSCEEEETTEEEEEEETTTTEEEECHHHHHHHHHTTC--S
T ss_pred HHHHHHHHHHHHHcCCC-------Ccc-------ccCCCCceEEEEECCEEEEEEEccCCeEEEcHHHHHHhhhCCC--C
Confidence 68999999999999941 555 44677 456789999998 777788899999 55676654 8
Q ss_pred EEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEEEcc
Q 030201 93 KLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLND 172 (181)
Q Consensus 93 ~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i~~~~kG~av~~~h~~~D 172 (181)
+|+||+ ++++| |||+|||++ ++++|++||.|+| . + ++++|||+|+||++||....+|+||+++|+++|
T Consensus 232 ~V~Vd~----~v~~G-~v~~pGv~~----~~~~i~~gd~V~V-~-~-g~~vavG~a~ms~~em~~~~kG~aV~v~~~~~~ 299 (306)
T 2q07_A 232 TVEIGD----FEVKG-TIFAGGVLR----ADEKIRPNDVVVF-H-N-SRIFGVGLAAMSGKEMAGSEKGIAINVKRKFSE 299 (306)
T ss_dssp EEEECS----SCCCS-EEEGGGEEE----ECTTCCTTCEEEE-E-C-SSCEEEEEESSCHHHHSCC--CEEEEEEEEEC-
T ss_pred EEEEcc----cccCC-ceeCCeeEe----CCCCcCCCCEEEE-E-C-CEEEEEEEEeeCHHHHhhcCCceEEEEEEEccC
Confidence 999998 88999 999999999 7788999999999 3 4 799999999999999999999999999999999
Q ss_pred cc
Q 030201 173 GL 174 (181)
Q Consensus 173 ~L 174 (181)
.-
T Consensus 300 ~~ 301 (306)
T 2q07_A 300 GH 301 (306)
T ss_dssp --
T ss_pred Cc
Confidence 63
No 8
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=99.60 E-value=5.3e-16 Score=119.89 Aligned_cols=136 Identities=11% Similarity=0.106 Sum_probs=103.9
Q ss_pred cccCHHHHHHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEECCEEE-----------E-------EEe---
Q 030201 14 NQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPL-----------F-------FNI--- 72 (181)
Q Consensus 14 ~~l~~sd~kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl-----------~-------f~~--- 72 (181)
-+|+++|.+.+.+.+.+ |+.. +.+.+.+.+.. ..++|++++.|+ . |+.
T Consensus 8 R~L~~~E~k~i~~~L~~-y~~~---------~~~~~~~~~~~-~~~Vy~v~~~~~~~~~~~~~~l~s~G~~~Gk~~~~~t 76 (166)
T 2p38_A 8 RRASSWELDLILKEAEK-YGEL---------LHEFFCVVEGK-YRDVYAVNEEVWKIIEDINMRPYSLGTFVGTIRVDEN 76 (166)
T ss_dssp EECCHHHHHHHHHHHHT-TEEE---------CCCCEEEEESS-SEEEEEECHHHHHHTTTCCCCGGGTEEEEEEEEECTT
T ss_pred ccCCHHHHHHHHHHHHH-hcCC---------CcccEEEEEcc-CcEEEEECcHHHHHhhccCccceEEEEEEEEEEeccc
Confidence 36899999999999985 5421 12335555543 568888888764 2 212
Q ss_pred cCCCcchhhhhhhcCCCCccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCH
Q 030201 73 RDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSA 152 (181)
Q Consensus 73 ~~~~~~PTl~~l~~~p~~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~ 152 (181)
.++.++||+.++...+.....|+|+++|..++++|||+|.|||.+ ++ +.+||.|+|+.+ ++.|+|+|++++|
T Consensus 77 ~~~kf~pti~~l~~l~~~k~kV~V~~~ae~~flyG~dV~k~gI~~----~~--~~~~~~VvV~~~-~~~pLG~G~a~~s- 148 (166)
T 2p38_A 77 LVEKFYPNLEFFSLIKLEKNYVILGPKASFLFTTGKDAPKEAVRE----IK--WQGSKRVVVLND-LGDIIGIGLINPK- 148 (166)
T ss_dssp SCEEEEECHHHHTTEEECSSEEEECHHHHHHHHTTCCBCGGGEEE----EE--CSSCSEEEEECT-TSCEEEEEEECTT-
T ss_pred CCCeEEEehHHhhhccccccEEEECCcceEeeecCCCcchhcceE----Ee--ecCCCEEEEEEC-CCcEEEEEEEEEC-
Confidence 145699999888665444568999999999999999999999998 65 899999999985 8999999999998
Q ss_pred HHHhcCCcceEEEEEEEEcccc
Q 030201 153 KDIKAINKGIGVDNMHYLNDGL 174 (181)
Q Consensus 153 ~~i~~~~kG~av~~~h~~~D~L 174 (181)
.+|++++..|.+|-.|
T Consensus 149 ------~~gkvv~n~~dvGeYL 164 (166)
T 2p38_A 149 ------SDRRFIKNLKDVGEFL 164 (166)
T ss_dssp ------CSTTSEEEEEC-----
T ss_pred ------CCCEEEEEcccceeee
Confidence 7999999999999765
No 9
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=99.17 E-value=3.4e-11 Score=103.94 Aligned_cols=85 Identities=22% Similarity=0.411 Sum_probs=74.5
Q ss_pred CccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEE
Q 030201 90 IMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHY 169 (181)
Q Consensus 90 ~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i~~~~kG~av~~~h~ 169 (181)
.+|+|.+++.+++++++|+.|+.||+.. .+++++.||.|++++ .++.++|+|++.|++++|...++|++|++..+
T Consensus 265 ~lp~V~L~deaa~~V~NGq~L~~pgVl~----~~~~i~~gd~VvVvt-~kGelLAIG~A~mss~em~~~~~G~vvk~~rV 339 (400)
T 3u28_A 265 GYKRIVVKDSAVNAVCYGAKLMIPGLLR----YEEGIELYDEIVLIT-TKGEAIAVAIAQMSTVDLASCDHGVVASVKRC 339 (400)
T ss_dssp TSCEEEECHHHHHHHHHHSEEEGGGEEE----ECTTCCTTCEEEEEC-TTCCEEEEEEESSCHHHHHHCSSSEEEEEEEE
T ss_pred hCCccccCHHHHHHHHCcCccccCcccc----ccccCCCCCEEEEEe-CCCcEEEEEEEEeCHHHHhhcCCcEEEEEEEE
Confidence 3689999999999999999999999987 556788999999998 57999999999999999999999999999999
Q ss_pred Ecc-----cccCCCc
Q 030201 170 LND-----GLWKMER 179 (181)
Q Consensus 170 ~~D-----~Lw~~~~ 179 (181)
+++ ..|-+|+
T Consensus 340 ~m~~~~yp~~w~~~~ 354 (400)
T 3u28_A 340 IMERDLYPRRWGLGP 354 (400)
T ss_dssp CSCTTSSCCCC----
T ss_pred eecCCCCccccCcCh
Confidence 998 5687776
No 10
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=98.91 E-value=1.9e-08 Score=78.62 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=105.2
Q ss_pred ccCHHHHHHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEEC------------------CEEE-EEEecCC
Q 030201 15 QVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVN------------------NVPL-FFNIRDG 75 (181)
Q Consensus 15 ~l~~sd~kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~d------------------g~pl-~f~~~~~ 75 (181)
+|...|.+.+.+.|..-.|. .+..|+...+.--+.+... .++|++. |..+ .|+ .++
T Consensus 3 ~Lt~~E~~~vf~kL~~yiG~---n~~~li~~~~~~~~frl~~-~rVyyv~~~i~~~a~~i~r~~l~s~Gtc~Gkft-k~g 77 (188)
T 1sqw_A 3 PLTEEETRVMFEKIAKYIGE---NLQLLVDRPDGTYCFRLHN-DRVYYVSEKIMKLAANISGDKLVSLGTCFGKFT-KTH 77 (188)
T ss_dssp ECCHHHHHHHHHHHHHHHGG---GTHHHHEETTEEEEEEEET-TEEEEEEHHHHHTTTSSCHHHHHHHSEEEEEEC-TTS
T ss_pred CCCHHHHHHHHHHHHHHhcc---CHHHHhcCCCCceEEEecC-CEEEEECHHHHHHHhcCCcCCeeEeeeEEEEEe-cCC
Confidence 58889999999999866653 2444433222233455433 2444432 2222 233 346
Q ss_pred CcchhhhhhhcC-CCCccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHH
Q 030201 76 PYMPTLRLLHQY-PNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKD 154 (181)
Q Consensus 76 ~~~PTl~~l~~~-p~~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~ 154 (181)
.+.|++.++... |....+|.|.+.+..+++.|.|++..+|.. +++++++||.|+|+. .++.|+|+|++..|++|
T Consensus 78 kF~L~It~l~~La~~~~~kV~Vk~~~E~~flyG~nVfk~~V~~----i~e~i~~~~~VvV~n-~~d~pLG~G~a~~s~~e 152 (188)
T 1sqw_A 78 KFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGR----ITENTSQYQGVVVYS-MADIPLGFGVAAKSTQD 152 (188)
T ss_dssp CEEECGGGHHHHGGGCSCEEEECHHHHHHHTTTCCEEGGGEEE----ECTTCCTTCEEEEEE-TTCCEEEEEEESSCHHH
T ss_pred cEEEchhHHHHhhhccCcEEEECCCceeeEEeccchhHHhhhh----cCCCCCCCCEEEEEe-CCCCEEEEEEeecCHHH
Confidence 788888554322 233468999999999999999999999999 889999999999999 66899999999999999
Q ss_pred HhcC-CcceEEEEEEEEcccc
Q 030201 155 IKAI-NKGIGVDNMHYLNDGL 174 (181)
Q Consensus 155 i~~~-~kG~av~~~h~~~D~L 174 (181)
+... ..|++|...-=+|..|
T Consensus 153 ~~~~~~~~~vv~~q~D~GeYL 173 (188)
T 1sqw_A 153 CRKVDPMAIVVFHQADIGEYV 173 (188)
T ss_dssp HHHSCTTSEEEEEEEEGGGTC
T ss_pred HHhcCCCcEEEEEcccceeee
Confidence 9884 5567666655444443
No 11
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=98.65 E-value=4.7e-08 Score=83.90 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=57.7
Q ss_pred CccEEEECcchhhhhh-cCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHHhc
Q 030201 90 IMKKLQVDRGAIKFVL-SGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKA 157 (181)
Q Consensus 90 ~lp~v~v~~~a~~~i~-~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i~~ 157 (181)
....|+||++|+++|. +|++||.+||++ +..+|++||.|.|++ .++.++|.|.+.+|++|+..
T Consensus 274 ~~G~v~vD~gA~~al~~~g~sLl~~Gi~~----v~g~F~~gd~V~i~~-~~g~~ia~G~~~y~s~e~~~ 337 (367)
T 2j5v_A 274 PAGEITVDEGATAAILERGSSLLPKGIKS----VTGNFSRGEVIRICN-LEGRDIAHGVSRYNSDALRR 337 (367)
T ss_dssp CSCEEEECHHHHHHHHHHCCCBCGGGEEE----EESCCCTTCEEEEEE-TTCCEEEEEECSSCHHHHHH
T ss_pred CCCEEEECcCHHHHHHhCCCccCCcccEE----EECcccCCCEEEEEC-CCCCEEEEEEecCCHHHHHH
Confidence 4569999999999997 799999999999 778999999999999 47899999999999999864
No 12
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=98.63 E-value=6.9e-08 Score=81.88 Aligned_cols=78 Identities=29% Similarity=0.425 Sum_probs=69.6
Q ss_pred ccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEEE
Q 030201 91 MKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYL 170 (181)
Q Consensus 91 lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i~~~~kG~av~~~h~~ 170 (181)
+|.+.+++.+++++++|+.|+.||+.. .++++..|+.|.|++ .++.++|+|++.+++++|....+|.++++.+.+
T Consensus 250 ~p~V~L~de~a~~V~nGq~L~~~gv~~----~~~~i~~gd~V~V~~-~~G~fLAIGe~~~s~~e~~~~~~G~~vKp~rV~ 324 (334)
T 2aus_C 250 LPKIWIKDSAVAAVAHGANLTVPGIVK----LNAGIKKGDLVAIMT-LKDELVALGKAMMSTQEMIERSKGIAVDVEKVF 324 (334)
T ss_dssp SCEEEECHHHHHHHHTTCCEEGGGEEE----EETTCCTTCEEEEEE-TTCCEEEEEEESSCHHHHHHCSSSEEEEEEEEC
T ss_pred ccEEEECHHHHHHHHCCCccccCcccc----cccccCCCCEEEEEe-cCCeEEEEEEeccCchhccccCCCeEEEEEEEe
Confidence 799999999999999999999999865 445678899999987 568999999999999999999999999999999
Q ss_pred ccc
Q 030201 171 NDG 173 (181)
Q Consensus 171 ~D~ 173 (181)
++.
T Consensus 325 ~~~ 327 (334)
T 2aus_C 325 MPR 327 (334)
T ss_dssp SCT
T ss_pred eCC
Confidence 763
No 13
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=98.52 E-value=1.9e-07 Score=79.75 Aligned_cols=79 Identities=28% Similarity=0.422 Sum_probs=69.5
Q ss_pred CccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEE
Q 030201 90 IMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHY 169 (181)
Q Consensus 90 ~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~~~~~i~~~~kG~av~~~h~ 169 (181)
.+|.+.+++.+++.|++|+.|+.||+.. .+.++..|+.|++++ .++.++|+|++.+++++|....+|.+++...+
T Consensus 268 ~lP~v~l~~~~~~~i~nG~~L~~pgi~~----~~~~i~~gd~V~v~~-~~G~flAIGea~~~~~ei~~~~kG~vvKp~rV 342 (357)
T 2apo_A 268 HLKKVVVKDSAVDAICHGADVYVRGIAK----LSKGIGKGETVLVET-LKGEAVAVGKALMNTKEILNADKGVAVDVERV 342 (357)
T ss_dssp TSEEEEECHHHHHHHHTTCCEEGGGEEE----EETTCCTTCEEEEEC-TTSCEEEEEEESSCHHHHHHCSSSEEEEEEEE
T ss_pred cCcEEEECHHHHHHHhCcCccCCCcccc----cccccCCCCeEEEEc-CCCEEEEEEEeccccccccccCCCeEEEEEEE
Confidence 3699999999999999999999999864 334677889899887 56899999999999999999999999999999
Q ss_pred Eccc
Q 030201 170 LNDG 173 (181)
Q Consensus 170 ~~D~ 173 (181)
+++.
T Consensus 343 f~~~ 346 (357)
T 2apo_A 343 YMDR 346 (357)
T ss_dssp CSCT
T ss_pred eeCC
Confidence 8763
No 14
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=87.48 E-value=0.91 Score=37.73 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=39.4
Q ss_pred CccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEE
Q 030201 90 IMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFT 148 (181)
Q Consensus 90 ~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~ 148 (181)
.+|.+.+++..+..+++|+.+..+++.. +..+..|+.+.++. .++.++|+|..
T Consensus 228 ~~p~v~l~~~~~~~~~~G~~l~~~~~~~-----~~~~~~~~~~~~~~-~~g~~~ai~~~ 280 (309)
T 1r3e_A 228 WLPRVVVHQESTKMILNGSQIHLEMLKE-----WDGFKKGEVVRVFN-EEGRLLALAEA 280 (309)
T ss_dssp TSCEEECCTTTHHHHTTTCCEESSSCCE-----ECCCCTTCEEEEEC-SSSCEEEEEEE
T ss_pred CCCeEEeCHHHHHHHHCcCcccCCcccc-----cccccCCCEEEEEc-CCCeEEEEEEE
Confidence 3799999999999999999998776420 01223355677776 56789999987
No 15
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=84.44 E-value=1.1 Score=37.75 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=44.1
Q ss_pred ccEEEECcchhhhhhcCCc-ccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEe
Q 030201 91 MKKLQVDRGAIKFVLSGAN-IMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTK 149 (181)
Q Consensus 91 lp~v~v~~~a~~~i~~GAd-Lm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~ 149 (181)
++.|+++.+..+.+.+|-. ++..-|.+ ...+++.|++|.|.+ .++.++++|...
T Consensus 2 ~~~~~l~~~~~~~~~~~~pwv~~~~i~~----~~~~~~~g~~v~v~~-~~g~~l~~G~~~ 56 (396)
T 3c0k_A 2 SVRLVLAKGREKSLLRRHPWVFSGAVAR----MEGKASLGETIDIVD-HQGKWLARGAYS 56 (396)
T ss_dssp CCEEEECTTCCHHHHTTCSEEEGGGEEE----EESCCCTTCEEEEEC-TTCCEEEEEEEC
T ss_pred ceEEEECchHHHHHhcCCCeEEhhHhhc----ccCCCCCCCEEEEEc-CCCCEEEEEEEC
Confidence 4578899999999999987 67887765 445689999999988 668889999764
No 16
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=81.48 E-value=2.6 Score=35.25 Aligned_cols=47 Identities=11% Similarity=0.146 Sum_probs=36.2
Q ss_pred ccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEE
Q 030201 91 MKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFT 148 (181)
Q Consensus 91 lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~ 148 (181)
+|.+.+++..+..+++|+.|..+++. .++.+.++...++.++|+|..
T Consensus 264 lp~v~l~~~~~~~l~~G~~l~~~~~~-----------~~~~v~v~~~~~g~~lai~~~ 310 (327)
T 1k8w_A 264 YPVVNLPLTSSVYFKNGNPVRTSGAP-----------LEGLVRVTEGENGKFIGMGEI 310 (327)
T ss_dssp SCEEEECHHHHHHHTTTCCBCCSSCC-----------SSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEeCHHHHHHHhCcCccCCCCCC-----------CCCeEEEEECCCCEEEEEEEE
Confidence 69999999999999999998776521 124577762256899999976
No 17
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=73.27 E-value=4.6 Score=33.81 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=42.0
Q ss_pred cEEEECcchhhhhhcCCc-ccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEec
Q 030201 92 KKLQVDRGAIKFVLSGAN-IMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKM 150 (181)
Q Consensus 92 p~v~v~~~a~~~i~~GAd-Lm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~~ 150 (181)
+.|+++.++.++|.+|.. +|.-.+.. ...++..|++|.|++ .++.++++|.-.-
T Consensus 2 ~~v~l~~~~~~~l~~g~pw~yrn~i~~----~~~~~~~g~~v~v~~-~~g~~l~~G~~~~ 56 (396)
T 2as0_A 2 ARVVVDAQAARAIGKGAMIVFKKGVVR----VEGDIKPGDIVEVYT-RGGKFLGKGFANP 56 (396)
T ss_dssp CEEEECHHHHHHHHTTCCEEEGGGEEE----EESCCCTTCEEEEEE-TTCCEEEEEEECT
T ss_pred ceEEECHhHHHHHHcCCcEEEHHHccc----cCCCCCCCCEEEEEc-CCCCEEEEEEECC
Confidence 468999999999988875 66777655 234578899999998 5578899997643
No 18
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=64.49 E-value=9.4 Score=31.70 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=32.6
Q ss_pred ccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEE
Q 030201 91 MKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFT 148 (181)
Q Consensus 91 lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~ 148 (181)
+|.+.+++..+..+++|+.|..++. ++.+.+.. .++.++|+|..
T Consensus 236 ~p~v~l~~~~~~~l~~G~~l~~~~~-------------~~~~~~~~-~~g~~lai~~~ 279 (316)
T 1sgv_A 236 FARRDLTAAEASAAANGRSLPAVGI-------------DGVYAACD-ADGRVIALLRD 279 (316)
T ss_dssp SEEEECCHHHHHHHHTTCCCBCCCC-------------CSCEEEEC-TTSCEEEEEEE
T ss_pred CCeEEeCHHHHHHHHCcCcccCCCC-------------CCeEEEEC-CCCEEEEEEEE
Confidence 6899999999999999998865441 12355554 45678888865
No 19
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=62.43 E-value=8.7 Score=32.47 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=39.2
Q ss_pred ccEEEECcchhhhhhcCCcc-cCCcccCCCCCCCcCCCCCCeEEEEeCCCCeEEEEEEEe
Q 030201 91 MKKLQVDRGAIKFVLSGANI-MCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTK 149 (181)
Q Consensus 91 lp~v~v~~~a~~~i~~GAdL-m~pGV~~~~~~~~~~i~~Gd~V~V~~~~~~~~vaVG~~~ 149 (181)
++.|++..+..+.+.+|-.. +.--|.. .+.+ ||+|.|.+ .++.++|+|...
T Consensus 5 ~~~~~l~~~~~~~~~~g~pwi~~~~i~~----~~~~---G~~v~v~~-~~g~~lg~g~~~ 56 (393)
T 4dmg_A 5 VLRLVVKAGKERKLRNFYPNLYRDEIAA----PPEG---VGVAEAVD-AEGHFLAVGYYD 56 (393)
T ss_dssp CCEEEECTTCCHHHHTTCCEECGGGEEE----CCSS---SEEEEEEC-TTCCEEEEEEEC
T ss_pred CcEEEECcchHHHHhcCCCEEEHHHhcC----cCCC---CCEEEEEc-CCCCEEEEEEEC
Confidence 67899999999999999874 4444544 2222 99999998 668999999774
No 20
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=45.28 E-value=16 Score=23.99 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=23.2
Q ss_pred CCccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEe
Q 030201 89 NIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMA 136 (181)
Q Consensus 89 ~~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~ 136 (181)
.-||++...|++++++ ++++||+|-|.-
T Consensus 32 ~qLPrI~~~DPvar~~--------------------G~k~GdVvkI~R 59 (78)
T 1hmj_A 32 QQLPKIYEDDPVIQEI--------------------GAKEGDVVRVIR 59 (78)
T ss_pred HHCCeeeCcCHhhHHh--------------------CCCCCCEEEEEE
Confidence 4589999999999887 467799998865
No 21
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=41.91 E-value=13 Score=24.46 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=23.9
Q ss_pred CCCccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEe
Q 030201 88 PNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMA 136 (181)
Q Consensus 88 p~~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~ 136 (181)
+.-+|+|...|++++++ ++++||+|-|.-
T Consensus 33 ~~qLP~I~~~DPvar~~--------------------G~k~GdVvkI~R 61 (77)
T 1eik_A 33 PEQLPKIKTTDPVAKAI--------------------GAKRGDIVKIIR 61 (77)
T ss_dssp TTTSCCCBTTSHHHHGG--------------------GCCTTCEEEEEE
T ss_pred HHHCCeeeCcCHhhHHh--------------------CCCCCCEEEEEE
Confidence 45689999999999887 467899998865
No 22
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=40.18 E-value=72 Score=21.89 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=34.1
Q ss_pred HHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEECCEEEEEEecCCCcchhhhhh
Q 030201 22 RKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLL 84 (181)
Q Consensus 22 kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l 84 (181)
..+.+++.++|+.. +. .+++.-.++..-++.+||+++|=+..++. ||....|
T Consensus 23 ~~laqeLl~tF~~~---l~-------~v~l~P~~~G~FEV~vng~lV~SKk~~gg-FPe~~eL 74 (104)
T 2oka_A 23 AWLAQELLSTFADD---LG-------KVCLEPGTGGVFRITCDGVQVWERKADGG-FPEAKAL 74 (104)
T ss_dssp HHHHHHHHHHSTTT---CS-------EEEEEEECTTCEEEEETTEEEEEHHHHTS-CCCHHHH
T ss_pred HHHHHHHHHHcCcc---cc-------eEEEEeCCCceEEEEECCEEEEEEecCCC-CCCHHHH
Confidence 35788899999842 21 25555555666777899999986655443 6766444
No 23
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=36.56 E-value=83 Score=21.61 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=33.8
Q ss_pred HHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEECCEEEEEEecCCCcchhhhhh
Q 030201 22 RKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLL 84 (181)
Q Consensus 22 kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l 84 (181)
..+.+++..+|+.. +. .+++.-.++..-++.+||+++|=+..++. ||....|
T Consensus 21 ~~laqeLl~tF~~~---l~-------~v~l~P~~~G~FEV~vng~lV~SKk~~gg-FPe~~eL 72 (105)
T 2p0g_A 21 AWLSQELLHTFSEE---IE-------YVALHPDTGGRFEIFCNGVQIWERKQEGG-FPEAKVL 72 (105)
T ss_dssp HHHHHHHHHHTTTT---EE-------EEEEEEESTTCEEEEETTEEEEEHHHHTS-CCCHHHH
T ss_pred HHHHHHHHHHcCcc---cc-------eEEEEeCCCceEEEEECCEEEEEEecCCC-CCCHHHH
Confidence 35788899999842 21 24555545666677889999986655443 6766544
No 24
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=34.09 E-value=30 Score=22.94 Aligned_cols=28 Identities=4% Similarity=0.100 Sum_probs=22.8
Q ss_pred CCccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEe
Q 030201 89 NIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMA 136 (181)
Q Consensus 89 ~~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~ 136 (181)
+-||+|...|++++++ ++++||+|-|.-
T Consensus 40 ~qLP~I~~~DPva~~~--------------------g~k~GdVvkI~R 67 (84)
T 4ayb_H 40 EQLPWIRASDPVARSI--------------------NAKPGDIIRIIR 67 (84)
T ss_dssp GGSCCEESSSHHHHHH--------------------TCCTTCEEEEEE
T ss_pred hHCCeecccCHhHHhh--------------------CCCCCCEEEEEE
Confidence 4579999999998887 467899998865
No 25
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=30.63 E-value=89 Score=21.61 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=33.4
Q ss_pred HHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEECCEEEEEEecCCCcchhhhhh
Q 030201 22 RKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLL 84 (181)
Q Consensus 22 kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l 84 (181)
..|.+++..+|+. .+ ..+++...++..-.+.+||+++|=+..++. ||....|
T Consensus 26 ~~laqeLl~tF~~---~l-------~eV~L~P~~~G~FeV~vng~lVwsRk~~gg-FPe~keL 77 (108)
T 2ojl_A 26 AWMAQELLSTFGA---DL-------GEVALVPGTGGVFRIHYNGAPLWDREVDGG-FPEAKVL 77 (108)
T ss_dssp HHHHHHHHHHHGG---GS-------SEEEEEEECTTCEEEEETTEEEEEHHHHCS-CCCHHHH
T ss_pred HHHHHHHHHhcCc---cc-------ceEEEEeCCCceEEEEECCEEEEEEccCCC-CCCHHHH
Confidence 3577889999973 12 125555545566667789999986654443 5766544
No 26
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=27.90 E-value=1.4e+02 Score=20.50 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEECCEEEEEEecCCCcchhhhhh
Q 030201 22 RKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLL 84 (181)
Q Consensus 22 kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l 84 (181)
..+.+++.++|+.. +++ +++.--++..-.+.+||+.+|=+. ++ =||....|
T Consensus 30 ~~laqeLl~tF~~~---l~e-------VsL~Pg~gG~FeV~vdg~lVwsRk-~g-GFPd~keL 80 (107)
T 3dex_A 30 AWLAQELLTTFETE---LTE-------LALKPGTGGVFVVRVDDEVVWDRR-EQ-GFPEPTAV 80 (107)
T ss_dssp HHHHHHHHHHSTTT---EEE-------EEEEEESSSCEEEEETTEEEEEHH-HH-CSCCHHHH
T ss_pred HHHHHHHHHhcccc---cce-------EEEEeCCCceEEEEECCEEEEEec-CC-CCCCHHHH
Confidence 45788899999842 222 444444555566678999998554 22 26766444
No 27
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=27.62 E-value=1.1e+02 Score=20.99 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=33.4
Q ss_pred HHHHHHHHHhHCCCCcchhcccCCCCCcEEEEEeeCceEEEEECCEEEEEEecCCCcchhhhhh
Q 030201 21 QRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLL 84 (181)
Q Consensus 21 ~kkLr~~~~~~f~~~~~~~~~llp~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l 84 (181)
...+.++|.++|+. .+. .+++.-..+..-++.+||+++|=+.+++. ||....|
T Consensus 24 a~~laqeLl~tF~~---~l~-------~V~l~P~~~G~FEV~vng~lV~SKk~~gg-FPe~~el 76 (105)
T 2fa8_A 24 AGWMAQEILQTFAS---DIG-------EVSLIPSTGGLFEITVDGTIIWERKRDGG-FPGPKEL 76 (105)
T ss_dssp HHHHHHHHHHHHGG---GCS-------EEEEEEECTTCEEEEETTEEEEEHHHHTS-CCCHHHH
T ss_pred HHHHHHHHHHHcCc---ccc-------eEEEEcCCCcEEEEEECCEEEEEeccCCC-CCCHHHH
Confidence 34578889999973 121 24555445556667789999986665443 6766444
No 28
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=21.25 E-value=1e+02 Score=22.10 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=19.1
Q ss_pred cCCCCCCeEEEEeCCC---------CeEEEEEEEe
Q 030201 124 EEVGAETPVAIMAEGK---------QHALAIGFTK 149 (181)
Q Consensus 124 ~~i~~Gd~V~V~~~~~---------~~~vaVG~~~ 149 (181)
...++||.+..+..+. ..++|||++.
T Consensus 33 r~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~ 67 (145)
T 2hd9_A 33 SRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVT 67 (145)
T ss_dssp TTCCTTCEEEEEECCEECTTCCEECCEEEEEEEEC
T ss_pred HhCCCCCEEEEEEccccccCCCCCCceEEEEEEEc
Confidence 3689999999998543 4677777664
No 29
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=21.00 E-value=51 Score=25.72 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCccEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEEe
Q 030201 89 NIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMA 136 (181)
Q Consensus 89 ~~lp~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~i~~Gd~V~V~~ 136 (181)
.-||+|...|++++++ ++++||+|-|.-
T Consensus 173 ~qLP~I~~~DPvar~~--------------------g~k~G~vvkI~R 200 (215)
T 1dzf_A 173 SQLPRIQRADPVALYL--------------------GLKRGEVVKIIR 200 (215)
T ss_dssp GGSCEECTTCHHHHHH--------------------TCCTTCEEEEEC
T ss_pred HHCCceeccChhhHHh--------------------CCcCCCEEEEEE
Confidence 4578888888888887 567899998865
Done!