BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030202
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CNW|A Chain A, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196.
pdb|3CNW|B Chain B, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196
Length = 148
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 23/138 (16%)
Query: 30 EQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWT 89
EQ+W + F L W P + + +G G VR A N D D
Sbjct: 17 EQVWQLIGGFNSLPDWLPYIPSSKLTEG-----GRVRHLA-------NPDGDT------I 58
Query: 90 KQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTV--APKENGCYIEWKYEVEPVKGWRLE 147
++L N +E TYSI + Y+ST+ V + N +EW PV+ E
Sbjct: 59 IERLEVFNDKERYYTYSIXNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVEVSDEE 118
Query: 148 DLDCF---ISSGLQVMAR 162
++ F S GL+ + +
Sbjct: 119 AINLFHGIYSDGLKALQQ 136
>pdb|3F08|A Chain A, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153.
pdb|3F08|B Chain B, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153
Length = 146
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 20/116 (17%)
Query: 28 KAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVN 87
EQ+W + F L W P + + +G G VR A + D E +
Sbjct: 13 STEQVWQLIGGFNSLPDWLPYIPSSKLTEG-----GRVRHLA---------NPDGETII- 57
Query: 88 WTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTV--APKENGCYIEWKYEVEPV 141
++L N +E TYSI + Y+ST+ V + N +EW PV
Sbjct: 58 ---ERLEVFNDKERYYTYSIXNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPV 110
>pdb|2LE1|A Chain A, Solution Nmr Structure Of Tfu_2981 From Thermobifida
Fusca, Northeast Structural Genomics Consortium Target
Tfr85a
Length = 151
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 22/145 (15%)
Query: 26 GVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQ-PGCVR-FCAGFKTPVDNKDDDHE 83
A +W + DF + +W P ++ ++G S PG R F AG + + + + +
Sbjct: 11 AAPAADVWTLVGDFSAIHRWHPQVSAPT-LRGASPHTPGAERVFGAGTEEELVERLVERD 69
Query: 84 QSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWK--YEVEP 140
+S L Y++ D + + L V P+++ C + W ++ P
Sbjct: 70 ESAR--------------RLVYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFDCSP 115
Query: 141 VKGWRLEDL--DCFISSGLQVMARR 163
LE + D + GL +A R
Sbjct: 116 ETARELESVIGDGVFAVGLNALAER 140
>pdb|2G5G|X Chain X, Cofacial Heme Binding To Chan Of Campylobacter Jejuni
Length = 268
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 81 DHEQSVN---WTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYE 137
D+EQ VN ++K K+L N +T SI +G GYVST K+ I ++
Sbjct: 122 DYEQFVNVVFYSKSKILGANLSRSEIT-SIYNGAQPLKGYVSTTNEVKKQLFDIISLSHK 180
Query: 138 VEPVKGWRLED 148
+ P + L D
Sbjct: 181 LNPEENKELLD 191
>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-3
Length = 433
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 136 YEVEPVKGWRLEDLDCFISS 155
YE+ P K +L+DLD FISS
Sbjct: 250 YEMTPEKNPQLKDLDVFISS 269
>pdb|2R7A|A Chain A, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2R7A|B Chain B, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2R7A|C Chain C, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2R7A|D Chain D, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2RG7|A Chain A, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
pdb|2RG7|B Chain B, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
pdb|2RG7|C Chain C, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
pdb|2RG7|D Chain D, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
Length = 256
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 82 HEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLT 122
H+Q +++ + L+A N E + +T +VDG++ ++ +T
Sbjct: 177 HQQYKSYSAESLIAANPEVIVVTSQMVDGDINRLRSIAGIT 217
>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-1
Length = 434
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 136 YEVEPVKGWRLEDLDCFISS 155
YE+ P K +L+DLD FISS
Sbjct: 251 YEMTPEKNPQLKDLDVFISS 270
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 72 KTPVDNKDDDHEQSVNWTKQKLLAINAEEM-TLTYSIVDGNVGFYGYVSTLTVAPKENGC 130
+ P+ +K++ S+ W +++L + AEEM T + + Y S P N
Sbjct: 344 RLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDI--PATNKT 401
Query: 131 YIEWKY 136
++EWK+
Sbjct: 402 FLEWKH 407
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 72 KTPVDNKDDDHEQSVNWTKQKLLAINAEEM-TLTYSIVDGNVGFYGYVSTLTVAPKENGC 130
+ P+ +K++ S+ W +++L + AEEM T + + Y S P N
Sbjct: 339 RLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPS--FDIPATNKT 396
Query: 131 YIEWKY 136
++EWK+
Sbjct: 397 FLEWKH 402
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 72 KTPVDNKDDDHEQSVNWTKQKLLAINAEEM-TLTYSIVDGNVGFYGYVSTLTVAPKENGC 130
+ P+ +K++ S+ W +++L + AEEM T + + Y S P N
Sbjct: 344 RLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDI--PATNKT 401
Query: 131 YIEWKY 136
++EWK+
Sbjct: 402 FLEWKH 407
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 72 KTPVDNKDDDHEQSVNWTKQKLLAINAEEM-TLTYSIVDGNVGFYGYVSTLTVAPKENGC 130
+ P+ +K++ S+ W +++L + AEEM T + + Y S P N
Sbjct: 344 RLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDI--PATNKT 401
Query: 131 YIEWKY 136
++EWK+
Sbjct: 402 FLEWKH 407
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 72 KTPVDNKDDDHEQSVNWTKQKLLAINAEEM-TLTYSIVDGNVGFYGYVSTLTVAPKENGC 130
+ P+ +K++ S+ W +++L + AEEM T + + Y S P N
Sbjct: 344 RLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFDI--PATNKT 401
Query: 131 YIEWKY 136
++EWK+
Sbjct: 402 FLEWKH 407
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 26.9 bits (58), Expect = 6.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 74 PVDNKDDDHEQSVNWTKQKLLAINA 98
PV + +D + + WTKQ L++I+A
Sbjct: 278 PVGTRIEDQQLGIIWTKQALVSISA 302
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 72 KTPVDNKDDDHEQSVNWTKQKLLAINAEEM-TLTYSIVDGNVGFYGYVSTLTVAPKENGC 130
+ P+ +K++ S+ W +++L + AEEM T + + Y S P N
Sbjct: 339 RLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPS--FDIPATNKT 396
Query: 131 YIEWKY 136
++EWK+
Sbjct: 397 FLEWKH 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,081,080
Number of Sequences: 62578
Number of extensions: 253749
Number of successful extensions: 495
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 16
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)