BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030202
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P59082|LFS_ALLCE Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1
Length = 169
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 15 KWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTP 74
KW G+ L K EQ W L+DF L K P+L+ C ++G + GCVR+ G P
Sbjct: 20 KWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHP 79
Query: 75 VDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTV--APKENGCYI 132
++ + W K+KL+A++ + M+ +Y + G+ Y +T+ + P+ G
Sbjct: 80 IEEE--------FWAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIVEGPEHKGSRF 131
Query: 133 EWKYEVEPVKG 143
+W ++ + ++G
Sbjct: 132 DWSFQCKYIEG 142
>sp|Q93VR4|ML423_ARATH MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=1 SV=1
Length = 155
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 29 AEQIWAFLEDFFGL-DKWFPT-LTTCIPIQGISGQPGCVRFCA-GFKTPVDNKDDDHEQS 85
AE+ W L D L K FP T + G PG +R G +P+
Sbjct: 17 AEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITYGEGSPL---------- 66
Query: 86 VNWTKQKLLAINAEEMTLTYSIVDGNVGFY--GYVSTLTVAPKENGCYIEWKYEVE 139
V + +++ A++ E +++YSI+ G + Y + T+TV PK+ G ++W E E
Sbjct: 67 VKISAERIEAVDLENKSMSYSIIGGEMLEYYKTFKGTITVIPKDGGSLLKWSGEFE 122
>sp|Q5THJ4|VP13D_HUMAN Vacuolar protein sorting-associated protein 13D OS=Homo sapiens
GN=VPS13D PE=1 SV=1
Length = 4387
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 31 QIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGC---VRFCAGFKTPVDNKDDDHEQS-- 85
Q W + DFFG+ +P +GI +G + PV+ K D S
Sbjct: 1824 QTWVVILDFFGIGSTADNHAMRLPPEGILHNVKLEPHASMESGLQDPVNTKLDLKVHSLS 1883
Query: 86 --VNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVA 124
+N T +L N ++ +++G++ G + +L+++
Sbjct: 1884 LVLNKTTSELAKANVSKLVAHLEMIEGDLALQGSIGSLSLS 1924
>sp|Q9RSP3|SYT_DEIRA Threonine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=thrS PE=3 SV=1
Length = 649
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 65 VRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA-EEMTLTYSIVDGNVGFYG 116
VRF G + P +K EQ NW + I A EE+ L Y+I G+ FYG
Sbjct: 423 VRFRVGVRDPESDKYVGDEQ--NWALAERQIIEAVEEVGLPYTIEPGDAAFYG 473
>sp|P27538|PR2_PETCR Pathogenesis-related protein 2 OS=Petroselinum crispum GN=PR2 PE=2
SV=1
Length = 158
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 90 KQKLLAINAEEMTLTYSIVDGNVGFYGYV----STLTVAPKENGCYIE 133
KQ++ I+AE + +YSI++G++ G + S TV P + GC ++
Sbjct: 69 KQRIDEIDAEALKYSYSIIEGDL-LLGIIESITSKFTVVPTDGGCIVK 115
>sp|P75175|Y620_MYCPN Uncharacterized protein MG422 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_620 PE=4 SV=1
Length = 839
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 77 NKDDDHEQSVNWTKQKLLAINAE---EMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIE 133
N+ + H + VN KQ +L + E++ +YS+V+ F G++ T+ A Y +
Sbjct: 423 NRCEQHNKLVNELKQNVLLNQNQYKGEVSQSYSVVNQKAVFKGFIQTVKAALN----YTK 478
Query: 134 WKYEVEPVKGWRLEDLDCF 152
K+ ++P + CF
Sbjct: 479 LKHTLDPFNLMNIVQERCF 497
>sp|Q9NQX4|MYO5C_HUMAN Unconventional myosin-Vc OS=Homo sapiens GN=MYO5C PE=1 SV=2
Length = 1742
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 78 KDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYE 137
K D+E+ + K+++ A+ E+M L + + +V G + + K+ E++ E
Sbjct: 1018 KTQDYEKQIQSLKEEIKALKDEKMQLQHLVEGEHVTSDGLKAEVARLSKQVKTISEFEKE 1077
Query: 138 VEPVKGWRLEDLDCFISSGLQVMARRM----KEALQAYEV 173
+E ++ ++ D++ + S + M +M K+ L++Y++
Sbjct: 1078 IELLQAQKI-DVEKHVQSQKREMREKMSEITKQLLESYDI 1116
>sp|Q9SSK9|MLP28_ARATH MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 82 HEQSVNWTKQKLLAINAEEMTLTYSIVDGNV--GFYGYVSTLTVAPKEN--GCYIEWKYE 137
H++ K+++ A+ + +T+ ++DG++ + ++ T+ V PK G + W E
Sbjct: 243 HDREAKVAKERIEAVEPNKNLITFRVIDGDLMKEYKSFLLTIQVTPKLGGPGSIVHWHLE 302
Query: 138 VEPV 141
E +
Sbjct: 303 YEKI 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,783,227
Number of Sequences: 539616
Number of extensions: 2975356
Number of successful extensions: 5962
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5959
Number of HSP's gapped (non-prelim): 9
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)