Query 030202
Match_columns 181
No_of_seqs 134 out of 1022
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 4E-24 8.6E-29 163.2 19.7 134 19-168 4-145 (148)
2 PF00407 Bet_v_1: Pathogenesis 99.9 4.9E-20 1.1E-24 141.4 18.2 139 19-170 7-150 (151)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 2.9E-17 6.3E-22 121.0 17.8 135 19-168 4-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.8 3.1E-16 6.7E-21 115.6 20.9 134 16-167 2-137 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 4.3E-16 9.3E-21 116.5 17.2 135 19-169 2-143 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.7 7.3E-15 1.6E-19 108.0 16.9 106 20-140 3-108 (140)
7 cd07819 SRPBCC_2 Ligand-bindin 99.7 2E-14 4.3E-19 106.3 18.0 134 19-167 5-139 (140)
8 cd08862 SRPBCC_Smu440-like Lig 99.6 1.7E-13 3.7E-18 101.1 17.1 132 18-168 3-136 (138)
9 cd07818 SRPBCC_1 Ligand-bindin 99.6 9.9E-14 2.1E-18 104.5 15.8 111 16-141 2-117 (150)
10 cd07822 SRPBCC_4 Ligand-bindin 99.6 8E-13 1.7E-17 97.3 17.2 136 19-168 3-140 (141)
11 cd07813 COQ10p_like Coenzyme Q 99.5 2.5E-13 5.5E-18 101.2 14.1 131 20-168 3-135 (138)
12 cd08861 OtcD1_ARO-CYC_like N-t 99.5 5.8E-13 1.2E-17 99.3 16.0 109 20-142 3-112 (142)
13 cd08860 TcmN_ARO-CYC_like N-te 99.5 1.8E-12 3.8E-17 98.8 16.3 134 19-166 4-144 (146)
14 cd07812 SRPBCC START/RHO_alpha 99.5 8.2E-12 1.8E-16 89.5 16.7 134 19-166 2-139 (141)
15 cd07824 SRPBCC_6 Ligand-bindin 99.5 4.7E-12 1E-16 95.6 15.6 107 20-141 5-112 (146)
16 cd07817 SRPBCC_8 Ligand-bindin 99.4 1E-11 2.2E-16 91.7 15.6 104 19-142 3-107 (139)
17 cd07814 SRPBCC_CalC_Aha1-like 99.4 4.2E-12 9E-17 93.7 13.4 134 19-168 3-137 (139)
18 cd07825 SRPBCC_7 Ligand-bindin 99.4 1.2E-11 2.7E-16 92.2 14.5 111 19-141 3-115 (144)
19 cd05018 CoxG Carbon monoxide d 99.4 2.8E-11 6E-16 89.7 14.3 109 19-141 4-113 (144)
20 cd07820 SRPBCC_3 Ligand-bindin 99.4 6.5E-11 1.4E-15 88.4 15.9 108 20-141 3-112 (137)
21 PRK10724 hypothetical protein; 99.3 1.6E-10 3.4E-15 89.3 13.5 134 19-169 18-152 (158)
22 PF03364 Polyketide_cyc: Polyk 99.2 7.2E-10 1.5E-14 81.4 13.8 122 25-164 1-129 (130)
23 cd07823 SRPBCC_5 Ligand-bindin 99.2 1.1E-09 2.4E-14 82.5 14.6 135 21-168 4-144 (146)
24 cd08898 SRPBCC_CalC_Aha1-like_ 99.1 2.8E-09 6.2E-14 79.3 13.6 133 19-169 4-144 (145)
25 cd08893 SRPBCC_CalC_Aha1-like_ 98.9 3E-08 6.4E-13 72.9 12.5 128 19-169 3-135 (136)
26 cd08899 SRPBCC_CalC_Aha1-like_ 98.9 3.3E-08 7.1E-13 75.7 11.6 125 18-170 13-137 (157)
27 cd08894 SRPBCC_CalC_Aha1-like_ 98.7 5.4E-07 1.2E-11 67.3 13.7 134 19-169 3-138 (139)
28 cd08897 SRPBCC_CalC_Aha1-like_ 98.7 5.1E-07 1.1E-11 67.0 13.2 127 19-169 3-132 (133)
29 cd08876 START_1 Uncharacterize 98.7 2.4E-06 5.2E-11 67.2 17.7 141 17-168 42-194 (195)
30 cd07826 SRPBCC_CalC_Aha1-like_ 98.7 1E-06 2.2E-11 66.3 14.6 137 19-169 3-141 (142)
31 COG3427 Carbon monoxide dehydr 98.7 3.8E-07 8.3E-12 69.3 11.8 107 21-141 6-113 (146)
32 cd08895 SRPBCC_CalC_Aha1-like_ 98.7 3.2E-06 6.8E-11 63.7 16.3 137 19-169 3-145 (146)
33 COG5637 Predicted integral mem 98.6 6.6E-07 1.4E-11 69.9 11.2 106 18-143 72-179 (217)
34 cd08896 SRPBCC_CalC_Aha1-like_ 98.6 2.6E-06 5.6E-11 64.2 13.9 134 19-169 3-145 (146)
35 cd08900 SRPBCC_CalC_Aha1-like_ 98.6 6.9E-06 1.5E-10 61.5 15.5 134 19-168 3-141 (143)
36 COG2867 Oligoketide cyclase/li 98.6 1.1E-06 2.3E-11 66.5 10.4 133 20-168 6-139 (146)
37 cd08892 SRPBCC_Aha1 Putative h 98.5 4.3E-06 9.2E-11 61.7 13.5 99 19-141 3-102 (126)
38 cd08901 SRPBCC_CalC_Aha1-like_ 98.5 4.1E-06 8.8E-11 62.5 12.5 128 19-171 3-133 (136)
39 cd08891 SRPBCC_CalC Ligand-bin 98.5 8.7E-06 1.9E-10 61.5 14.0 131 19-169 3-148 (149)
40 PF06240 COXG: Carbon monoxide 98.5 5.1E-06 1.1E-10 62.5 12.2 132 21-167 2-138 (140)
41 PF08327 AHSA1: Activator of H 98.4 4.7E-06 1E-10 60.2 11.0 120 26-168 1-123 (124)
42 COG3832 Uncharacterized conser 98.0 0.00015 3.3E-09 55.2 11.9 133 19-169 11-148 (149)
43 PTZ00220 Activator of HSP-90 A 98.0 0.00014 3E-09 54.2 10.8 89 26-137 2-93 (132)
44 cd08874 START_STARD9-like C-te 98.0 0.00098 2.1E-08 53.6 16.1 122 21-151 50-186 (205)
45 cd08905 START_STARD1-like Chol 97.6 0.0053 1.2E-07 49.3 15.0 139 19-168 52-206 (209)
46 cd08873 START_STARD14_15-like 97.6 0.0091 2E-07 49.1 16.3 138 19-165 80-233 (235)
47 cd08870 START_STARD2_7-like Li 97.6 0.017 3.6E-07 46.2 17.4 147 15-170 49-208 (209)
48 cd08914 START_STARD15-like Lip 97.5 0.0074 1.6E-07 49.6 14.5 135 17-166 79-235 (236)
49 cd08871 START_STARD10-like Lip 97.5 0.024 5.2E-07 45.7 17.1 142 20-170 51-202 (222)
50 cd08911 START_STARD7-like Lipi 97.4 0.023 5.1E-07 45.4 16.5 142 20-170 49-206 (207)
51 cd00177 START Lipid-binding ST 97.4 0.034 7.5E-07 42.6 16.7 140 16-166 39-190 (193)
52 cd08906 START_STARD3-like Chol 97.4 0.02 4.4E-07 46.0 15.8 138 19-168 52-206 (209)
53 cd08869 START_RhoGAP C-termina 97.2 0.035 7.6E-07 44.1 15.6 119 19-149 47-175 (197)
54 cd08877 START_2 Uncharacterize 97.2 0.013 2.8E-07 47.0 13.2 138 18-170 48-214 (215)
55 PF10698 DUF2505: Protein of u 97.2 0.0069 1.5E-07 46.5 10.7 67 97-164 85-155 (159)
56 cd08868 START_STARD1_3_like Ch 97.1 0.055 1.2E-06 43.1 15.8 122 18-149 50-185 (208)
57 cd08903 START_STARD5-like Lipi 97.1 0.056 1.2E-06 43.3 15.4 124 18-149 48-185 (208)
58 cd08913 START_STARD14-like Lip 97.0 0.043 9.3E-07 45.2 14.2 112 19-140 84-209 (240)
59 COG4276 Uncharacterized conser 97.0 0.098 2.1E-06 39.4 14.7 111 22-143 8-120 (153)
60 cd08908 START_STARD12-like C-t 96.8 0.18 3.9E-06 40.5 16.5 125 18-156 54-189 (204)
61 smart00234 START in StAR and p 96.8 0.19 4.1E-06 39.4 16.3 144 14-168 43-200 (206)
62 PF08982 DUF1857: Domain of un 96.5 0.16 3.5E-06 38.8 13.3 121 26-170 17-147 (149)
63 cd08910 START_STARD2-like Lipi 96.3 0.2 4.4E-06 40.1 13.4 143 17-170 50-206 (207)
64 cd08867 START_STARD4_5_6-like 96.0 0.61 1.3E-05 37.0 16.4 142 19-168 49-205 (206)
65 cd08904 START_STARD6-like Lipi 95.5 1 2.2E-05 36.2 15.7 141 18-168 48-203 (204)
66 KOG3177 Oligoketide cyclase/li 94.6 0.69 1.5E-05 37.3 10.5 100 25-140 76-180 (227)
67 cd08872 START_STARD11-like Cer 94.2 2.6 5.7E-05 34.5 14.5 141 18-169 54-225 (235)
68 cd08863 SRPBCC_DUF1857 DUF1857 93.4 2.6 5.7E-05 32.0 13.7 90 27-139 17-108 (141)
69 cd08902 START_STARD4-like Lipi 91.3 6.6 0.00014 31.6 15.6 140 18-168 49-201 (202)
70 PF01852 START: START domain; 90.4 7 0.00015 30.3 17.0 145 14-168 44-200 (206)
71 cd08909 START_STARD13-like C-t 89.3 10 0.00022 30.5 15.8 129 13-157 51-191 (205)
72 PF11687 DUF3284: Domain of un 89.1 7.1 0.00015 28.5 12.3 50 88-141 53-103 (120)
73 COG4891 Uncharacterized conser 85.5 5.9 0.00013 27.9 6.8 81 88-170 10-92 (93)
74 PLN00188 enhanced disease resi 65.4 1.3E+02 0.0029 28.8 13.3 115 20-141 231-361 (719)
75 KOG2936 Uncharacterized conser 63.0 44 0.00096 28.5 7.5 97 20-142 177-276 (301)
76 KOG2761 START domain-containin 47.3 1.6E+02 0.0034 24.1 13.6 144 18-171 55-215 (219)
77 PF09366 DUF1997: Protein of u 33.5 2.1E+02 0.0045 21.6 9.8 24 116-139 85-108 (158)
78 PF02087 Nitrophorin: Nitropho 28.9 2.9E+02 0.0063 21.7 6.7 25 88-112 49-73 (178)
79 PF06200 tify: tify domain; I 24.6 1E+02 0.0023 17.7 2.6 21 16-37 12-32 (36)
80 cd08907 START_STARD8-like C-te 22.2 4.2E+02 0.0091 21.4 13.0 125 14-154 52-188 (205)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.93 E-value=4e-24 Score=163.20 Aligned_cols=134 Identities=25% Similarity=0.452 Sum_probs=108.1
Q ss_pred EEEEEEeCCCHHHHHHHHhccCC-c-ccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFG-L-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI 96 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~-~-~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~ 96 (181)
..+++| +||+|+||++++||.+ + +.|.|.+.+|+.++|+ +++|++|.+++. .+ + ...+++|||+.+
T Consensus 4 ~~e~~i-~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~~~----~~--~----~~~~~kE~l~~~ 71 (148)
T cd07816 4 EHEVEL-KVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFG----PG--G----KVKYVKERIDAV 71 (148)
T ss_pred EEEEEe-cCCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEEEc----CC--C----cceEEEEEEEEE
Confidence 467888 9999999999999994 5 6788999999988887 789999999972 22 1 134799999999
Q ss_pred ecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Q 030202 97 NAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGW--RLEDLDCFISSGLQVMARRMKEAL 168 (181)
Q Consensus 97 D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~--~~~~~~~~~~~gl~~l~~~le~~~ 168 (181)
|+++|+++|++++|++ ++++|.++++|.|.++ +|.++|+++|+|..+. .++.+.. .+..+.+.+++++
T Consensus 72 D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~----~~~~~~~~~~~~~ 145 (148)
T cd07816 72 DEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKA----GKEKALKMFKAVE 145 (148)
T ss_pred cccccEEEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHh----HHHHHHHHHHHHH
Confidence 9999999999999987 5999999999999965 6999999999998763 3444433 3345555555554
No 2
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.86 E-value=4.9e-20 Score=141.37 Aligned_cols=139 Identities=24% Similarity=0.375 Sum_probs=110.1
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCc-cccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGL-DKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI 96 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~-~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~ 96 (181)
..++++ ++||+++|+++.+..++ |+.+|. +.++++++|+++..|+||.+++. + + | + ...++||++.+
T Consensus 7 ~~E~~~-~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~--~--~--~---~-~~~~Kekve~~ 75 (151)
T PF00407_consen 7 EVEVEV-KVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFG--P--G--G---P-FKYVKEKVEAI 75 (151)
T ss_dssp EEEEEE-SS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEE--T--T--S---S-EEEEEEEEEEE
T ss_pred EEEEEe-cCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEec--C--C--C---C-cceeEEEEEee
Confidence 457888 99999999999876555 999996 45567778876555699999983 2 2 3 2 35899999999
Q ss_pred ecCCCeEEEEEeeccc--ceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202 97 NAEEMTLTYSIVDGNV--GFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQA 170 (181)
Q Consensus 97 D~~~~~~~y~v~~g~~--p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~ 170 (181)
|+++++++|++++|.+ .+..|..++++.|.++| |.++|+++|++..+..+... -+..++..|.+.+|+|+++
T Consensus 76 D~~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~--~~~~~~~~~~K~ieayLla 150 (151)
T PF00407_consen 76 DEENKTITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPE--KYLDFAVGMFKAIEAYLLA 150 (151)
T ss_dssp ETTTTEEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcH--HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999985 47789999999998875 99999999999876553322 2444588999999999976
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.78 E-value=2.9e-17 Score=121.02 Aligned_cols=135 Identities=29% Similarity=0.543 Sum_probs=105.0
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
..+++| +||+++||+++.|+.++++|+|.+.+++...+.+ ++|+++.+.. .+ | ..++++++.+|+
T Consensus 4 ~~~~~i-~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~-~~g~~~~~~~-----~~--g------~~~~~~i~~~~~ 68 (140)
T cd07821 4 TVSVTI-DAPADKVWALLSDFGGLHKWHPAVASCELEGGGP-GVGAVRTVTL-----KD--G------GTVRERLLALDD 68 (140)
T ss_pred EEEEEE-CCCHHHHHHHHhCcCchhhhccCcceEEeecCCC-CCCeEEEEEe-----CC--C------CEEEEEehhcCc
Confidence 467888 9999999999999999999999998888766544 6899888875 12 2 168899999998
Q ss_pred CCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202 99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL 168 (181)
Q Consensus 99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~ 168 (181)
.+++++|++.++..|+..+.++++|+|.++ +|+|+|+..+++..+.....+...+..+++...+.|++++
T Consensus 69 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 69 AERRYSYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred cCCEEEEEecCCCCCcccceEEEEEEECCCCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 658999999987677888899999999987 7999999999987543333334445555555555555543
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.77 E-value=3.1e-16 Score=115.55 Aligned_cols=134 Identities=21% Similarity=0.414 Sum_probs=98.0
Q ss_pred eeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202 16 WQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA 95 (181)
Q Consensus 16 w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~ 95 (181)
++-.++++| +||+++||++++|+.++++|.|.+..++..++ +++|..+.+.. . | . ..++++++.
T Consensus 2 ~~~~~~~~v-~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~-----~---g--~---~~~~~~i~~ 65 (139)
T PF10604_consen 2 FKVEVSIEV-PAPPEAVWDLLSDPENWPRWWPGVKSVELLSG--GGPGTERTVRV-----A---G--R---GTVREEITE 65 (139)
T ss_dssp EEEEEEEEE-SS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE--CSTEEEEEEEE-----C---S--C---SEEEEEEEE
T ss_pred EEEEEEEEE-CCCHHHHHHHHhChhhhhhhhhceEEEEEccc--cccceeEEEEe-----c---c--c---cceeEEEEE
Confidence 455788999 99999999999999999999999999987762 23465566653 2 2 1 279999999
Q ss_pred EecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEee-CCCCCH-HHHHHHHHHHHHHHHHHHHHH
Q 030202 96 INAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEP-VKGWRL-EDLDCFISSGLQVMARRMKEA 167 (181)
Q Consensus 96 ~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p-~~~~~~-~~~~~~~~~gl~~l~~~le~~ 167 (181)
+++.++.+.|++. ..|+..+..+++|.|.++||+|+|++++++ ..+... ..+...+...++...++|+++
T Consensus 66 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 137 (139)
T PF10604_consen 66 YDPEPRRITWRFV--PSGFTNGTGRWRFEPVGDGTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRA 137 (139)
T ss_dssp EETTTTEEEEEEE--SSSSCEEEEEEEEEEETTTEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcEEEEEEE--ecceeEEEEEEEEEEcCCCEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 9987899999996 556777899999999999999999999996 323332 223333444444444444433
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.73 E-value=4.3e-16 Score=116.53 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=97.4
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCC-----ceEEEEeeeecCCCCCCCCCcCccceEEEEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQP-----GCVRFCAGFKTPVDNKDDDHEQSVNWTKQKL 93 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~v-----GsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl 93 (181)
+.++.| +||+++||+++.|++++++|+|.+.+|+++++.+++. |..+.+.. . . ...+..++
T Consensus 2 ~~~~~i-~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~---~--------~--~~~v~~~~ 67 (144)
T cd08866 2 VARVRV-PAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFF---K--------F--EARVVLEL 67 (144)
T ss_pred eEEEEE-CCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEee---e--------e--eEEEEEEE
Confidence 357888 9999999999999999999999999999876533221 11111110 0 0 01345566
Q ss_pred EEEecCCCeEEEEEeecccceeeEEEEEEEEEcCC--ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202 94 LAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKEN--GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 94 ~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~--gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~ 169 (181)
.+.++.++.++|++++|+ +..+.++++|+|.++ +|+|+|.++++|..+.....+..+++..+..+.+.|+++++
T Consensus 68 ~~~~~~~~~i~~~~~~g~--~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 68 REREEFPRELDFEMVEGD--FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEecCCCceEEEEEcCCc--hhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666655789999999774 577899999999986 59999999999975444433355677777777777777664
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.67 E-value=7.3e-15 Score=107.95 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=84.1
Q ss_pred EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202 20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE 99 (181)
Q Consensus 20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~ 99 (181)
.+++| +||+++||+++.|+.++++|.|.+..+..+.+.+.++|+...+.... + | . .-.++++++.+++
T Consensus 3 ~~~~i-~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~----~--g--~--~~~~~~~v~~~~p- 70 (140)
T cd08865 3 ESIVI-ERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKF----L--G--R--RIELTYEITEYEP- 70 (140)
T ss_pred eEEEE-cCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEe----c--C--c--eEEEEEEEEEecC-
Confidence 57788 99999999999999999999999988887665455678777665421 1 2 1 1156899999987
Q ss_pred CCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEee
Q 030202 100 EMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEP 140 (181)
Q Consensus 100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p 140 (181)
++.+.|....+++ .+..+++|.|.++||+++|++++++
T Consensus 71 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~t~v~~~~~~~~ 108 (140)
T cd08865 71 GRRVVFRGSSGPF---PYEDTYTFEPVGGGTRVRYTAELEP 108 (140)
T ss_pred CcEEEEEecCCCc---ceEEEEEEEEcCCceEEEEEEEEcc
Confidence 6899998776533 3688999999988999999999986
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.66 E-value=2e-14 Score=106.26 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=89.2
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
+.+++| +||+++||++|.|+.++++|+|.+.+++.+.+.+++.+....+... .+ + ...+.+..++.
T Consensus 5 ~~s~~i-~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~--~-------~~~~~~~~~~~ 70 (140)
T cd07819 5 SREFEI-EAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG----AY--G-------IKDTYALEYTW 70 (140)
T ss_pred EEEEEE-eCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEe----ee--e-------EEEEEEEEEEE
Confidence 457888 9999999999999999999999999998865433322222223220 11 1 22233334433
Q ss_pred C-CCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 030202 99 E-EMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEA 167 (181)
Q Consensus 99 ~-~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~ 167 (181)
. .+.++|+..++. +...+.++++|.|.++||+|+|+.++++...........+.+.++..+.+.|+++
T Consensus 71 ~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 71 DGAGSVSWTLVEGE-GNRSQEGSYTLTPKGDGTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred cCCCcEEEEEeccc-ceeEEEEEEEEEECCCCEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 2 578999988764 5677889999999999999999999997543222222333444455555555543
No 8
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.60 E-value=1.7e-13 Score=101.11 Aligned_cols=132 Identities=13% Similarity=0.024 Sum_probs=91.0
Q ss_pred eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202 18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN 97 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D 97 (181)
-+.+++| +||+++||+++.|+.++++|+|.+.+++...+.+ ++|+...+.. .+ + ..+..++++++
T Consensus 3 ~~~~~~i-~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~-~~G~~~~~~~-----~~--~------~~~~~~i~~~~ 67 (138)
T cd08862 3 FEATIVI-DAPPERVWAVLTDVENWPAWTPSVETVRLEGPPP-AVGSSFKMKP-----PG--L------VRSTFTVTELR 67 (138)
T ss_pred EEEEEEE-cCCHHHHHHHHHhhhhcccccCcceEEEEecCCC-CCCcEEEEec-----CC--C------CceEEEEEEec
Confidence 3568889 9999999999999999999999998888765432 6776655553 11 1 15778899998
Q ss_pred cCCCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202 98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKG-WRLEDLDCFISSGLQVMARRMKEAL 168 (181)
Q Consensus 98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~-~~~~~~~~~~~~gl~~l~~~le~~~ 168 (181)
+ +++++|+.... ...+..+++|++.+ ++|+++|++++..... .....+...++.+++...+.|++.+
T Consensus 68 p-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 136 (138)
T cd08862 68 P-GHSFTWTGPAP---GISAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAA 136 (138)
T ss_pred C-CCEEEEEecCC---CEEEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 7 56899875532 23456799999988 5799999999885321 1112233444444444444444443
No 9
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.59 E-value=9.9e-14 Score=104.48 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=82.2
Q ss_pred eeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEE----ecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEE
Q 030202 16 WQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIP----IQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQ 91 (181)
Q Consensus 16 w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~----~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~E 91 (181)
|.-+.++.| +||+++||+++.|+.++++|+|.+..+.. ..+...++|+...+.. + .+. | ....
T Consensus 2 ~~~~~s~~I-~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~---~-~~~-~-------~~~~ 68 (150)
T cd07818 2 YRVERSIVI-NAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEG---N-DKV-G-------EGEM 68 (150)
T ss_pred eEEEEEEEE-eCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEec---C-Ccc-c-------ceEE
Confidence 566789999 99999999999999999999997654321 1233456787766653 1 100 1 3456
Q ss_pred EEEEEecCCCeEEEEEeecccce-eeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202 92 KLLAINAEEMTLTYSIVDGNVGF-YGYVSTLTVAPKENGCYIEWKYEVEPV 141 (181)
Q Consensus 92 rl~~~D~~~~~~~y~v~~g~~p~-~~~~~t~~v~p~~~gT~v~W~~~~~p~ 141 (181)
+++.+++ ++++.|++..+ .|+ .....+++|+|.++||+|+|+++++..
T Consensus 69 ~v~~~~p-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~gT~v~~~~~~~~~ 117 (150)
T cd07818 69 EITESVP-NERIEYELRFI-KPFEATNDVEFTLEPVGGGTKVTWGMSGELP 117 (150)
T ss_pred EEEecCC-CcEEEEEEEec-CCccccceEEEEEEEcCCceEEEEEEEecCC
Confidence 7888876 67899998853 233 367899999999889999999999854
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.55 E-value=8e-13 Score=97.28 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=94.8
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
+.+++| +||+++||+++.|+.++++|+|.+..+.... ..+|+...+... .+ + | . ...+.++++++|+
T Consensus 3 ~~~~~i-~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~---~~~G~~~~~~~~-~~--~--~---~-~~~~~~~v~~~~p 69 (141)
T cd07822 3 STEIEI-NAPPEKVWEVLTDFPSYPEWNPFVRSATGLS---LALGARLRFVVK-LP--G--G---P-PRSFKPRVTEVEP 69 (141)
T ss_pred EEEEEe-cCCHHHHHHHHhccccccccChhheeEeccc---cCCCCEEEEEEe-CC--C--C---C-cEEEEEEEEEEcC
Confidence 467888 9999999999999999999999876655431 345655555431 11 1 1 1 1267889999998
Q ss_pred CCCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Q 030202 99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKGW-RLEDLDCFISSGLQVMARRMKEAL 168 (181)
Q Consensus 99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~-~~~~~~~~~~~gl~~l~~~le~~~ 168 (181)
++++.|+...++.+......+++|.|.+ ++|+++|+..+...... ....+...+..+++.+.+.|++++
T Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 140 (141)
T cd07822 70 -PRRLAWRGGLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARA 140 (141)
T ss_pred -CCEeEEEecCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhh
Confidence 6799999887655444567799999984 57999999888743211 112234567777777777777665
No 11
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.55 E-value=2.5e-13 Score=101.21 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=90.6
Q ss_pred EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202 20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE 99 (181)
Q Consensus 20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~ 99 (181)
.+++| +||++.||+++.|++++++|+|++.+++++++.+. +....+... .+ | . . ..+..++. +++
T Consensus 3 ~s~~i-~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~--~~~~~~~~~-~~-----~--~-~-~~~~~~~~-~~~- 67 (138)
T cd07813 3 KSRLV-PYSAEQMFDLVADVERYPEFLPWCTASRVLERDED--ELEAELTVG-FG-----G--I-R-ESFTSRVT-LVP- 67 (138)
T ss_pred EEEEc-CCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCC--EEEEEEEEe-ec-----c--c-c-EEEEEEEE-ecC-
Confidence 47788 99999999999999999999999999998875432 222223221 11 1 1 0 13344444 666
Q ss_pred CCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHHHHHH
Q 030202 100 EMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRMKEAL 168 (181)
Q Consensus 100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~le~~~ 168 (181)
+.++++...+| +++.+.++++|+|.++ +|+|+|..+++|..+ .+..+ ..+++..+..+.+.+++++
T Consensus 68 ~~~i~~~~~~g--~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~-l~~~l~~~~~~~~~~~~l~~f~~~~ 135 (138)
T cd07813 68 PESIEAELVDG--PFKHLEGEWRFKPLGENACKVEFDLEFEFKSR-LLEALAGLVFDEVAKKMVDAFEKRA 135 (138)
T ss_pred CCEEEEEecCC--ChhhceeEEEEEECCCCCEEEEEEEEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66899988877 4567889999999985 699999999998742 22222 3445555666666666554
No 12
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.55 E-value=5.8e-13 Score=99.28 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=78.1
Q ss_pred EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202 20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE 99 (181)
Q Consensus 20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~ 99 (181)
.+++| +||+++||+++.|+.++++|+|. ..+..+++.+ ....++.+.. .+ . | . ....+....++++
T Consensus 3 ~s~~i-~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~-~~~~~~~~~~--~~-~---g--~---~~~~~~~~~~~~~ 68 (142)
T cd08861 3 HSVTV-AAPAEDVYDLLADAERWPEFLPT-VHVERLELDG-GVERLRMWAT--AF-D---G--S---VHTWTSRRVLDPE 68 (142)
T ss_pred EEEEE-cCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcC-CEEEEEEEEE--cC-C---C--c---EEEEEEEEEEcCC
Confidence 57888 99999999999999999999998 5555444321 1113443332 01 1 2 1 1222445567777
Q ss_pred CCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCC
Q 030202 100 EMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVK 142 (181)
Q Consensus 100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~ 142 (181)
++++.|...+++.++..+.++++|+|.+ ++|+|+|..++++..
T Consensus 69 ~~~i~~~~~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~ 112 (142)
T cd08861 69 GRRIVFRQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGI 112 (142)
T ss_pred CCEEEEEEeeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECC
Confidence 8899999887555678889999999998 469999999999763
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.51 E-value=1.8e-12 Score=98.81 Aligned_cols=134 Identities=9% Similarity=0.143 Sum_probs=88.3
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEE-eeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFC-AGFKTPVDNKDDDHEQSVNWTKQKLLAIN 97 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~-~~~~~~~~g~~G~~~~~~~~~~Erl~~~D 97 (181)
.-+++| +|||++||+++.|+.+||+|+|.++.+++++.++.+.|. |.. .. +. + | . ...+..++. .|
T Consensus 4 ~~si~i-~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~-r~~i~~---~~-~--g--~-~~~w~s~~~--~~ 70 (146)
T cd08860 4 DNSIVI-DAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRF-RLTMHP---DA-N--G--T-VWSWVSERT--LD 70 (146)
T ss_pred eeEEEE-cCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEE-EEEEEe---cc-C--C--E-EEEEEEEEE--ec
Confidence 458899 999999999999999999999999999987754445553 331 21 11 2 3 1 122333332 56
Q ss_pred cCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCH--HHHHHH----HHHHHHHHHHHHHH
Q 030202 98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRL--EDLDCF----ISSGLQVMARRMKE 166 (181)
Q Consensus 98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~--~~~~~~----~~~gl~~l~~~le~ 166 (181)
+..+++.++ .....|+....+.++|+|.++||+|++..+|+...+... .-+... +...|++|++.+|+
T Consensus 71 ~~~~~i~~~-~~~~~p~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 71 PVNRTVRAR-RVETGPFAYMNIRWEYTEVPEGTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred CCCcEEEEE-EecCCCcceeeeeEEEEECCCCEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 666677764 222246888999999999988999999999996532221 112233 44455555555554
No 14
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.47 E-value=8.2e-12 Score=89.48 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=97.3
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
+.++.| +||+++||+++.|+.++++|+|.+..+....+.....|....+... + + + ......++..+++
T Consensus 2 ~~~~~i-~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~--~-----~~~~~~~v~~~~~ 69 (141)
T cd07812 2 EASIEI-PAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRK--G--G--R-----RLTLTSEVTEVDP 69 (141)
T ss_pred cEEEEe-CCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEec--C--C--c-----cccceEEEEEecC
Confidence 357788 9999999999999999999999999888776555566665555431 0 1 1 1256788888887
Q ss_pred CCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCC---CHHHHHHHHHHHHHHHHHHHHH
Q 030202 99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGW---RLEDLDCFISSGLQVMARRMKE 166 (181)
Q Consensus 99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~---~~~~~~~~~~~gl~~l~~~le~ 166 (181)
+..++|+...++.+ ..+..++++.+.++ +|+|+|..++.+.... ....+...++..+..+.+.+++
T Consensus 70 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 70 -PRPGRFRVTGGGGG-VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred -CCceEEEEecCCCC-cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 67899998876554 46788999999998 8999999999976432 2233445555555555555544
No 15
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.46 E-value=4.7e-12 Score=95.61 Aligned_cols=107 Identities=18% Similarity=0.253 Sum_probs=77.6
Q ss_pred EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec-CCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ-GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~-G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
-+.+| +||+++||++++|+.++++|+|.+.++..++ +.+.++|+....... . .. | . ...++-+++.+++
T Consensus 5 ~~~~i-~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~--~-~~--~--~--~~~~~~~v~~~~p 74 (146)
T cd07824 5 TVWRI-PAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWR--G-LL--P--Y--RLRFELRVTRIEP 74 (146)
T ss_pred EEEEe-cCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEE--e-cC--C--c--EEEEEEEEEeecC
Confidence 35678 9999999999999999999999999988876 345567765433211 0 01 1 1 0145566677766
Q ss_pred CCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202 99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPV 141 (181)
Q Consensus 99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~ 141 (181)
++.++|+. .|+ +. ...+++|+|.++||+|+++.++++.
T Consensus 75 -~~~~~~~~-~g~--~~-~~~~~~~~~~~~gt~vt~~~~~~~~ 112 (146)
T cd07824 75 -LSLLEVRA-SGD--LE-GVGRWTLAPDGSGTVVRYDWEVRTT 112 (146)
T ss_pred -CcEEEEEE-EEe--ee-EEEEEEEEEcCCCEEEEEEEEEEcC
Confidence 67899985 453 33 3688999998889999999999853
No 16
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=1e-11 Score=91.67 Aligned_cols=104 Identities=16% Similarity=0.270 Sum_probs=76.6
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
+.+++| +||+++||+++.|+.++++|+|.+.+++...+. +....+.. | . | ... ....+++.+++
T Consensus 3 ~~~i~I-~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~----~~~~~~~~---~-~---g---~~~-~~~~~v~~~~~ 66 (139)
T cd07817 3 EKSITV-NVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT----RSHWKAKG---P-A---G---LSV-EWDAEITEQVP 66 (139)
T ss_pred eEEEEe-CCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC----ceEEEEec---C-C---C---CcE-EEEEEEeccCC
Confidence 357889 999999999999999999999999888876441 22222222 2 1 2 112 45666777776
Q ss_pred CCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCC
Q 030202 99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVK 142 (181)
Q Consensus 99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~ 142 (181)
++.+.|....+.+ .+.++++|+|.++ +|+|++++.++|..
T Consensus 67 -~~~i~~~~~~~~~---~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 67 -NERIAWRSVEGAD---PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred -CCEEEEEECCCCC---CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 5679998776543 5678999999876 79999999999764
No 17
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.44 E-value=4.2e-12 Score=93.65 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=88.5
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
..+++| +||+++||+++.|+.++++|+|.+..+..... .| |+.+.+.. ...| + ...+..+++.+++
T Consensus 3 ~~s~~I-~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~-~G--g~~~~~~~---~~~g--~-----~~~~~~~i~~~~~ 68 (139)
T cd07814 3 TIEREF-DAPPELVWRALTDPELLAQWFGPTTTAEMDLR-VG--GRWFFFMT---GPDG--E-----EGWVSGEVLEVEP 68 (139)
T ss_pred EEEEEe-cCCHHHHHHHcCCHHHHHhhhCcCCceEEccc-CC--ceEEEEEE---CCCC--C-----EEeccEEEEEEcC
Confidence 357889 99999999999999999999996322222111 11 56665543 1111 1 1257889999997
Q ss_pred CCCeEEEEEeeccc-ceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202 99 EEMTLTYSIVDGNV-GFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL 168 (181)
Q Consensus 99 ~~~~~~y~v~~g~~-p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~ 168 (181)
++.+.|+...+.. +......+++|.|.+++|+|+|+.++.+.... ...+...+..+.+.+...|++++
T Consensus 69 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 69 -PRRLVFTWAFSDETPGPETTVTVTLEETGGGTRLTLTHSGFPEEDA-EQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred -CCeEEEEecccCCCCCCceEEEEEEEECCCCEEEEEEEEccChHhH-HHHHHhCHhhHHHHHHHHHHHHh
Confidence 5789999887643 34456888999999988999999998875321 22223334444444444554444
No 18
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=1.2e-11 Score=92.24 Aligned_cols=111 Identities=14% Similarity=0.013 Sum_probs=77.1
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecC-CCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQG-ISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN 97 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G-~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D 97 (181)
..+++| +||+++||+++.|+.++++|+|.........+ ..-++|....+... .+ | + . ..+..+++.++
T Consensus 3 ~~~~~i-~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~--g--~---~--~~~~~~v~~~~ 71 (144)
T cd07825 3 SVSRTV-DAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMR-LD--G--G---P--YRITNHVVAFE 71 (144)
T ss_pred EEEEEE-eCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEE-cC--C--C---c--eEEEEEEEEEC
Confidence 578899 99999999999999999999985332222222 23467876655542 11 2 2 1 25667789998
Q ss_pred cCCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeC
Q 030202 98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPV 141 (181)
Q Consensus 98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~ 141 (181)
+ +++++|+......+......+++|++.++ +|+|+++..|...
T Consensus 72 p-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~ 115 (144)
T cd07825 72 E-NRLIAWRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAV 115 (144)
T ss_pred C-CCEEEEEccCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCC
Confidence 8 67899986522223344567889999885 6999999998854
No 19
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.38 E-value=2.8e-11 Score=89.72 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=74.3
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
+.+++| ++|+++||+++.|++++++|+|.+.+++.+++.. ......+.. .| .+ + . -...-+++.+++
T Consensus 4 ~~~~~i-~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~--~~~~~~~~~--~~-~~--~----~-~~~~~~~~~~~~ 70 (144)
T cd05018 4 SGEFRI-PAPPEEVWAALNDPEVLARCIPGCESLEKIGPNE--YEATVKLKV--GP-VK--G----T-FKGKVELSDLDP 70 (144)
T ss_pred eeEEEe-cCCHHHHHHHhcCHHHHHhhccchhhccccCCCe--EEEEEEEEE--cc-EE--E----E-EEEEEEEEecCC
Confidence 467889 9999999999999999999999998877654321 111111111 01 00 0 0 022456666665
Q ss_pred CCCeEEEEEeec-ccceeeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202 99 EEMTLTYSIVDG-NVGFYGYVSTLTVAPKENGCYIEWKYEVEPV 141 (181)
Q Consensus 99 ~~~~~~y~v~~g-~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~ 141 (181)
++.+.++.... ......+..+++|+|.++||+|+|+.++++.
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~ 113 (144)
T cd05018 71 -PESYTITGEGKGGAGFVKGTARVTLEPDGGGTRLTYTADAQVG 113 (144)
T ss_pred -CcEEEEEEEEcCCCceEEEEEEEEEEecCCcEEEEEEEEEEEc
Confidence 46777776542 2235578999999999778999999999975
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.37 E-value=6.5e-11 Score=88.41 Aligned_cols=108 Identities=10% Similarity=0.028 Sum_probs=81.2
Q ss_pred EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCC--CCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202 20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGIS--GQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN 97 (181)
Q Consensus 20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~--~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D 97 (181)
.+++| +||+++||+++.|..++++|+|.+.+++++...+ -.+|+.-.+... + . | . .. ..+-+++.++
T Consensus 3 ~s~~I-~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~--~--~--~--~-~~-~w~~~it~~~ 71 (137)
T cd07820 3 RSTVI-PAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLR--H--F--G--I-PQ-RWTTEITEVE 71 (137)
T ss_pred EEEEc-CCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEE--e--c--C--C-ce-EEEEEEEEEc
Confidence 57788 9999999999999999999999988887764222 244665555442 1 1 1 1 12 3466778888
Q ss_pred cCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202 98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPV 141 (181)
Q Consensus 98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~ 141 (181)
+ ++.++++...|+ +..+..++.+.|.++||+|+++.+|++.
T Consensus 72 p-~~~f~~~~~~G~--~~~w~h~~~f~~~~~gT~vt~~v~~~~p 112 (137)
T cd07820 72 P-PRRFVDEQVSGP--FRSWRHTHRFEAIGGGTLMTDRVEYRLP 112 (137)
T ss_pred C-CCeEEEEeccCC--chhCEEEEEEEECCCceEEEEEEEEeCC
Confidence 6 678999988764 4557778899998889999999999974
No 21
>PRK10724 hypothetical protein; Provisional
Probab=99.27 E-value=1.6e-10 Score=89.30 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=92.0
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
+.++.| ++|++++|+++.|.+++|+|+|.+..+++++-.+++ ....+... -+ | . ......+.. +++
T Consensus 18 ~~~~~v-~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~--~~a~l~v~----~~--g--~--~~~f~srv~-~~~ 83 (158)
T PRK10724 18 SRTALV-PYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ--MTAAVDVS----KA--G--I--SKTFTTRNQ-LTS 83 (158)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE--EEEEEEEe----eC--C--c--cEEEEEEEE-ecC
Confidence 456778 999999999999999999999999999887633322 12222210 01 2 1 113444444 344
Q ss_pred CCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202 99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~ 169 (181)
++++.+.+++| |++.+.+.++|.|.++ +|+|++..+|+.........+..+++.....|.+.+++++.
T Consensus 84 -~~~I~~~~~~G--pF~~l~g~W~f~p~~~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~ 152 (158)
T PRK10724 84 -NQSILMQLVDG--PFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAK 152 (158)
T ss_pred -CCEEEEEecCC--ChhhccceEEEEECCCCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999988 4788999999999885 69999999999653222222345566666777777776653
No 22
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.21 E-value=7.2e-10 Score=81.38 Aligned_cols=122 Identities=16% Similarity=0.253 Sum_probs=76.8
Q ss_pred eCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEE-EeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeE
Q 030202 25 TGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRF-CAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTL 103 (181)
Q Consensus 25 ~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~-~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~ 103 (181)
++||+++||+++.|++++++|+|.+.++++++..++ + ++. +... .+ + ... ....++....+ .. +
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~--~-~~~~~~~~----~~--~---~~~-~~~~~~~~~~~-~~-~ 65 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD--G-MRARWEVK----FG--G---IKR-SWTSRVTEDPP-ER-I 65 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC--E-EEEEEEEC----TT--T---TCE-EEEEEEEEECT-TT-E
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC--e-EEEEEEEe----cC--C---EEE-EEEEEEEEEEe-ee-e
Confidence 399999999999999999999999999998875433 2 222 2221 11 1 112 34555554443 33 7
Q ss_pred EEEEeecccceeeEEEEEEEEEcCC---ceEEEEEEEEe--eCCCCCHHHH-HHHHHHHHHHHHHHH
Q 030202 104 TYSIVDGNVGFYGYVSTLTVAPKEN---GCYIEWKYEVE--PVKGWRLEDL-DCFISSGLQVMARRM 164 (181)
Q Consensus 104 ~y~v~~g~~p~~~~~~t~~v~p~~~---gT~v~W~~~~~--p~~~~~~~~~-~~~~~~gl~~l~~~l 164 (181)
.+....| +++.+.+++++.|.++ ||++..++++. |.. ..+..+ +.+++..+..+.+.|
T Consensus 66 ~~~~~~g--~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 66 RFEQISG--PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG-PLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp EEESSET--TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSS-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecCC--CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc-HhHHHHHHHHHHHHHHHHHHhh
Confidence 7777766 4688999999999986 76555555554 442 333333 344555555555544
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.20 E-value=1.1e-09 Score=82.53 Aligned_cols=135 Identities=11% Similarity=0.071 Sum_probs=78.2
Q ss_pred EEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCC
Q 030202 21 CEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEE 100 (181)
Q Consensus 21 ~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~ 100 (181)
+++| +||+++||++|.|+.+++.|+|++.+.+...+ +.....-.+.. + + ....-..+=+++.+++.+
T Consensus 4 ~~~v-~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~--~~~~~~~~~~~------g--~--~~~~~~~~~~~~~~~~~~ 70 (146)
T cd07823 4 EFTV-PAPPDRVWALLLDIERVAPCLPGASLTEVEGD--DEYKGTVKVKL------G--P--ISASFKGTARLLEDDEAA 70 (146)
T ss_pred eEEe-cCCHHHHHHHhcCHHHHHhcCCCceeccccCC--CeEEEEEEEEE------c--c--EEEEEEEEEEEEeccCCC
Confidence 5778 99999999999999999999998876665332 11111111111 1 0 000001122566666357
Q ss_pred CeEEEEEeeccc---ceeeEEEEEEEEEcCCceEEEEEEEEeeC---CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202 101 MTLTYSIVDGNV---GFYGYVSTLTVAPKENGCYIEWKYEVEPV---KGWRLEDLDCFISSGLQVMARRMKEAL 168 (181)
Q Consensus 101 ~~~~y~v~~g~~---p~~~~~~t~~v~p~~~gT~v~W~~~~~p~---~~~~~~~~~~~~~~gl~~l~~~le~~~ 168 (181)
+.+.+.....+. +--....+++|.|.++||+|+|..+++.. .......+....+..++.+.+.|++++
T Consensus 71 ~~~~~~~~g~~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 71 RRAVLEATGKDARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred cEEEEEEEEecCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 788887554211 11135668888886678999999988743 222222233444545555555555544
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.12 E-value=2.8e-09 Score=79.28 Aligned_cols=133 Identities=11% Similarity=0.149 Sum_probs=83.2
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
..+++| +||+++||+++.|...+++|++... +....+ .+..|. +.. + + + . .....-+++.+++
T Consensus 4 ~~~i~i-~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~-~~~~g~---~~~---~--~--~---~-~~~~~~~i~~~~p 66 (145)
T cd08898 4 ERTILI-DAPRERVWRALTDPEHFGQWFGVKL-GPFVVG-EGATGE---ITY---P--G--Y---E-HGVFPVTVVEVDP 66 (145)
T ss_pred EEEEEe-cCCHHHHHHHhcChhhhhhcccccC-CCcccC-CcceeE---Eec---C--C--C---C-ccceEEEEEEeCC
Confidence 357889 9999999999999999999998543 211111 111122 221 1 1 0 0 0145678888987
Q ss_pred CCCeEEEEEeecc----c---ceeeEEEEEEEEEcCCceEEEEEEE-EeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202 99 EEMTLTYSIVDGN----V---GFYGYVSTLTVAPKENGCYIEWKYE-VEPVKGWRLEDLDCFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 99 ~~~~~~y~v~~g~----~---p~~~~~~t~~v~p~~~gT~v~W~~~-~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~ 169 (181)
++.++|+..... . +......+++|.+.++||+|+++.. +........+........|.+.+...|++++.
T Consensus 67 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 67 -PRRFSFRWHPPAIDPGEDYSAEPSTLVEFTLEPIAGGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred -CcEEEEEecCCCcccccccCCCCceEEEEEEEecCCcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 678888865432 1 1223567899999988999999865 43321111122334566777777777777764
No 25
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.94 E-value=3e-08 Score=72.86 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=79.0
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN 97 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D 97 (181)
..+++| +||+++||+++.|...+++|++... + ..+ -.+| ..+.... . .+ ...+.-++++++
T Consensus 3 ~~~~~i-~ap~e~Vw~~~td~~~~~~W~~~~~-~---~~~-~~~G~~~~~~~~---~-~~--------~~~~~~~v~~~~ 64 (136)
T cd08893 3 VYVTYI-RATPEKVWQALTDPEFTRQYWGGTT-V---ESD-WKVGSAFEYRRG---D-DG--------TVDVEGEVLESD 64 (136)
T ss_pred EEEEEe-cCCHHHHHHHHcCchhhhheecccc-c---ccC-CcCCCeEEEEeC---C-Cc--------ccccceEEEEec
Confidence 357888 9999999999999999999998622 1 111 1234 3333221 0 00 013455677787
Q ss_pred cCCCeEEEEEeeccc----ceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202 98 AEEMTLTYSIVDGNV----GFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 98 ~~~~~~~y~v~~g~~----p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~ 169 (181)
+ ++.++|+...+.. +......++.|++.+++|+++.+....+... .+....+.|.+.+.+.|+++++
T Consensus 65 ~-~~~l~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~t~l~~~~~~~~~~~----~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 65 P-PRRLVHTWRAVWDPEMAAEPPSRVTFEIEPVGDVVKLTVTHDGFPPGS----PTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred C-CCeEEEEEecCCCcccCCCCCEEEEEEEEecCCcEEEEEEecCCCCch----hHHHhhhcCHHHHHHHHHHHhc
Confidence 6 6677777653222 1235677899999888899888877644321 2233455556666666666553
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.89 E-value=3.3e-08 Score=75.73 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=81.1
Q ss_pred eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202 18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN 97 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D 97 (181)
=.++++| +||+++||+++.|+.++++|+|.. .. .-.+|....+... + .+ + .....++++++
T Consensus 13 i~~~~~i-~Ap~e~Vw~altdp~~~~~W~~~~-~~------~~~~G~~~~~~~~--~-~~--~------~~~~~~v~e~~ 73 (157)
T cd08899 13 LRFERLL-PAPIEDVWAALTDPERLARWFAPG-TG------DLRVGGRVEFVMD--D-EE--G------PNATGTILACE 73 (157)
T ss_pred EEEEEec-CCCHHHHHHHHcCHHHHHhhcCCC-CC------CcccCceEEEEec--C-CC--C------CccceEEEEEc
Confidence 4568888 999999999999999999999932 11 1124433333321 1 01 0 14567888998
Q ss_pred cCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202 98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQA 170 (181)
Q Consensus 98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~ 170 (181)
+ ++.+.|+...+. .....+++|++.++||+|+.+.++.+.. ........|.+.+...|++++..
T Consensus 74 p-~~~l~~~~~~~~---~~~~~~~~l~~~~~gT~v~~~~~~~~~~-----~~~~~~~~GW~~~L~~Lk~~~e~ 137 (157)
T cd08899 74 P-PRLLAFTWGEGG---GESEVRFELAPEGDGTRLTLTHRLLDER-----FGAGAVGAGWHLCLDVLEAALEG 137 (157)
T ss_pred C-CcEEEEEecCCC---CCceEEEEEEEcCCCEEEEEEEeccCch-----hhhhhhcccHHHHHHHHHHHHcC
Confidence 7 578888876543 2346688899888889999998887643 12233444555555555555543
No 27
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.74 E-value=5.4e-07 Score=67.33 Aligned_cols=134 Identities=17% Similarity=0.172 Sum_probs=79.3
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccc-cceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFP-TLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI 96 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~ 96 (181)
.++.+| +||+++||+++.|-..+.+|++ .-..+.....+ ..+| .-|.... .| + | . .-...-+++++
T Consensus 3 ~~~r~i-~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d-~~~GG~~~~~~~--~~-~---g--~--~~~~~g~v~e~ 70 (139)
T cd08894 3 VTTRVI-DAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFD-LRPGGRWRFVMH--GP-D---G--T--DYPNRIVFLEI 70 (139)
T ss_pred EEEEEe-CCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEE-ecCCCEEEEEEE--CC-C---C--C--EecceEEEEEE
Confidence 467889 9999999999999999999984 21112111111 1233 3333221 12 2 2 1 01234678999
Q ss_pred ecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202 97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~ 169 (181)
++ ++++.|+.... +. ....+++|+|.++||+|+.+..+.+.. .....+......|...+...|++++.
T Consensus 71 ~p-~~~l~~t~~~~--~~-~~~v~~~~~~~~~gT~ltl~~~~~~~~-~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 71 EP-PERIVYDHGSG--PP-RFRLTVTFEEQGGKTRLTWRQVFPTAA-ERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred cC-CCEEEEEeccC--CC-cEEEEEEEEECCCCEEEEEEEEcCCHH-HHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 88 67888886543 21 245789999988889999987654321 10111123355666666666666653
No 28
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.73 E-value=5.1e-07 Score=66.98 Aligned_cols=127 Identities=12% Similarity=0.165 Sum_probs=76.4
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCccccccccee--EEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTT--CIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA 95 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~--~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~ 95 (181)
.+++.| +||+++||+++.|-..+.+|++.... +...+.+ -.+| ..+.... .+ +| + . ...+.-++++
T Consensus 3 ~~~~~~-~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d-~~~GG~~~~~~~--~~-~g--~---~-~~~~~g~~~e 71 (133)
T cd08897 3 TVETTV-DAPIEKVWEAWTTPEHITKWNFASDDWHCPSAEND-LRVGGKFSYRME--AK-DG--S---M-GFDFEGTYTE 71 (133)
T ss_pred EEEEEe-CCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeec-CCcCCEEEEEEE--cC-CC--C---c-ccccceEEEE
Confidence 467889 99999999999999999999643211 1111111 1234 3333321 11 22 1 0 0134567888
Q ss_pred EecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202 96 INAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 96 ~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~ 169 (181)
+++ ++++.|+...+ ...+++|+|.++||+++-+ +.+......+ ....|...+...|+++++
T Consensus 72 i~p-~~~l~~~~~~~------~~v~~~l~~~~~gT~l~l~--~~~~~~~~~~----~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 72 VEP-HKLIEYTMEDG------REVEVEFTEEGDGTKVVET--FDAENENPVE----MQRQGWQAILDNFKKYVE 132 (133)
T ss_pred ECC-CCEEEEEcCCC------CEEEEEEEECCCCEEEEEE--ECCCCCCcHH----HHHHHHHHHHHHHHHHhh
Confidence 887 68999986432 3678999998888999875 4443222222 345555666666666653
No 29
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.73 E-value=2.4e-06 Score=67.20 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=84.7
Q ss_pred eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCC-CCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202 17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISG-QPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA 95 (181)
Q Consensus 17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~-~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~ 95 (181)
.=+++.+| ++|+++||+++.|.+.+++|.|.+..+.+++..+. .......+.. ..|..+ . ..+..+-..
T Consensus 42 ~~k~~~~i-~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~-p~pvs~--R------dfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEV-DASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDL-PWPVKD--R------DMVLRSTTE 111 (195)
T ss_pred EEEEEEEE-eCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEec-ccccCC--c------eEEEEEEEE
Confidence 34567778 99999999999999999999999999988763222 2222222221 011111 0 122222222
Q ss_pred EecCCCeEEEEEeecc--cc-------eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHH
Q 030202 96 INAEEMTLTYSIVDGN--VG-------FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRM 164 (181)
Q Consensus 96 ~D~~~~~~~y~v~~g~--~p-------~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~l 164 (181)
.+..+..+...+.+.+ .| +..+.+.+.++|.++ +|+|++...++|.. ..+..+ ..+....+..+.+.|
T Consensus 112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g-~iP~~lv~~~~~~~~~~~l~~l 190 (195)
T cd08876 112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGG-SIPGWLANAFAKDAPYNTLENL 190 (195)
T ss_pred EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 2221233333333221 12 456777889999976 59999999999974 444444 345666666676777
Q ss_pred HHHH
Q 030202 165 KEAL 168 (181)
Q Consensus 165 e~~~ 168 (181)
++++
T Consensus 191 ~~~~ 194 (195)
T cd08876 191 RKQL 194 (195)
T ss_pred HHhh
Confidence 6654
No 30
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.72 E-value=1e-06 Score=66.29 Aligned_cols=137 Identities=13% Similarity=0.039 Sum_probs=80.9
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccc-eeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTL-TTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI 96 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v-~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~ 96 (181)
.++.+| +||+++||+++.|-..+.+|+..- ..+...+.+ -.+| ..+.... .+ + | . ...+.=+++++
T Consensus 3 ~i~r~~-~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~~--~~-~---g--~--~~~~~g~~~ei 70 (142)
T cd07826 3 VITREF-DAPRELVFRAHTDPELVKRWWGPRGLTMTVCECD-IRVGGSYRYVHR--AP-D---G--E--EMGFHGVYHEV 70 (142)
T ss_pred EEEEEE-CCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEe-ccCCCEEEEEEE--CC-C---C--C--EecceEEEEEE
Confidence 467888 999999999999999999998532 122222211 1233 3443321 11 2 2 1 11356678889
Q ss_pred ecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202 97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~ 169 (181)
+| ++++.|+-.-...+-.....+++|.+.++||+++.+..+.... ............|...+..+|++++.
T Consensus 71 ~p-~~~l~~t~~~~~~~~~~s~v~~~l~~~~~gT~l~l~~~~~~~~-~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 71 TP-PERIVQTEEFEGLPDGVALETVTFTELGGRTRLTATSRYPSKE-ARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred cC-CCEEEEEeEecCCCCCceEEEEEEEECCCCEEEEEEEEeCCHH-HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 87 5677776442222223457789999988889999886653211 11112233456677777777777664
No 31
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.70 E-value=3.8e-07 Score=69.30 Aligned_cols=107 Identities=16% Similarity=0.312 Sum_probs=73.1
Q ss_pred EEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCC
Q 030202 21 CEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEE 100 (181)
Q Consensus 21 ~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~ 100 (181)
+..| ++|+++||++|.|.+.+..-+|++.+.+. .|+ .-.+.+|.--+ |.. + --.-+-++..+|+.+
T Consensus 6 ~f~V-~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~-~g~-e~~~~v~l~ig---~l~---~-----~~~g~~~~~~v~~~~ 71 (146)
T COG3427 6 TFRV-AAPPEAVWEFLNDPEQVAACIPGVQSVET-NGD-EYTAKVKLKIG---PLK---G-----TFSGRVRFVNVDEPP 71 (146)
T ss_pred eEEe-cCCHHHHHHHhcCHHHHHhhcCCcceeee-cCC-eEEEEEEEeec---cee---E-----EEEEEEEEccccCCC
Confidence 5678 99999999999999999888999877664 343 11122222221 110 0 002344566657777
Q ss_pred CeEEEEEeeccc-ceeeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202 101 MTLTYSIVDGNV-GFYGYVSTLTVAPKENGCYIEWKYEVEPV 141 (181)
Q Consensus 101 ~~~~y~v~~g~~-p~~~~~~t~~v~p~~~gT~v~W~~~~~p~ 141 (181)
++++-+...+.. .+-...+.++|.|.+++|+|.|.++.+-.
T Consensus 72 ~~~~i~g~G~~~~g~~~~~~~v~l~~~g~gt~v~w~~~~~~g 113 (146)
T COG3427 72 RSITINGSGGGAAGFADGTVDVQLEPSGEGTRVNWFADANVG 113 (146)
T ss_pred cEEEEEeecccccceeeeeeEEEEEEcCCCcEEEEEEEcccc
Confidence 888877666333 46677888999999999999999998853
No 32
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.68 E-value=3.2e-06 Score=63.67 Aligned_cols=137 Identities=17% Similarity=0.161 Sum_probs=79.5
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCccccccc-ceeEEEe--cCCCCCCceEEEEeeeecCCCCC-CCCCcCccceEEEEEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPT-LTTCIPI--QGISGQPGCVRFCAGFKTPVDNK-DDDHEQSVNWTKQKLL 94 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v~~~~~~--~G~~~~vGsvR~~~~~~~~~~g~-~G~~~~~~~~~~Erl~ 94 (181)
.++..| +||+++||+++.|...+.+|++. -..+... +-..| |..+.......+..|. +| . ...+.=+++
T Consensus 3 ~~~r~i-~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~G--G~~~~~~~~~~~~~g~~~g--~--~~~~~g~v~ 75 (146)
T cd08895 3 RLHRVI-AAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREG--GGFRMSLTYFDPSVGKTTG--N--TDVFGGRFL 75 (146)
T ss_pred EEEEEE-CCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccC--CeEEEEEEcCCccccccCC--c--EeeeEEEEE
Confidence 467889 99999999999999999999962 1122222 21122 2222221100000000 01 0 013455788
Q ss_pred EEecCCCeEEEEEee--cccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202 95 AINAEEMTLTYSIVD--GNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 95 ~~D~~~~~~~y~v~~--g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~ 169 (181)
++++ ++++.|+..- ...+ .....++.|++.+++|+|+++...-+.. ........|-..+...|++++.
T Consensus 76 ~v~p-~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~T~lt~~~~~~~~~-----~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 76 ELVP-NERIVYTDVFDDPSLS-GEMTMTWTLSPVSGGTDVTIVQSGIPDG-----IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred EEcC-CCEEEEEEEecCCCCC-ceEEEEEEEEecCCCEEEEEEEeCCCch-----hhhhHHHHHHHHHHHHHHHHhc
Confidence 8988 5688777542 1122 2346789999998889999998753321 1123456666666667777664
No 33
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.62 E-value=6.6e-07 Score=69.89 Aligned_cols=106 Identities=16% Similarity=0.275 Sum_probs=76.4
Q ss_pred eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202 18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN 97 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D 97 (181)
=+++++| ++|++.||++++|++++|.|+..+.+.++++... + |...- .| + | ..+.| +-+|++.
T Consensus 72 v~~~V~I-~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr----S-rW~~~--ap--~--g---~~v~W-ea~it~d- 134 (217)
T COG5637 72 VEVQVTI-DKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR----S-RWKAN--AP--L--G---LEVEW-EAEITKD- 134 (217)
T ss_pred EEEEEEe-CChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc----c-ceeEc--CC--C--C---ceEEE-eehhhcc-
Confidence 4578899 9999999999999999999999998888776432 2 33321 23 2 3 22323 4455554
Q ss_pred cCCCeEEEEEeecc-cceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCC
Q 030202 98 AEEMTLTYSIVDGN-VGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKG 143 (181)
Q Consensus 98 ~~~~~~~y~v~~g~-~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~ 143 (181)
..+..+.|.-++|. ++ ..+.++|.+..+ .|+|+-++.|.|..+
T Consensus 135 ~~~e~I~W~Sl~Ga~v~---NsG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 135 IPGERIQWESLPGARVE---NSGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred CCCcEEeeecCCCCcCC---CCccEEeeeCCCCceEEEEEEEecCCcc
Confidence 45789999988873 33 255678888765 589999999998754
No 34
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.60 E-value=2.6e-06 Score=64.15 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=77.5
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCccccccc----ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPT----LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLL 94 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~----v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~ 94 (181)
.+++.| +||+++||+++.|-..+.+|++. +..+...-. .| |..+.... .+ + | . . -.+.=+++
T Consensus 3 ~i~r~i-~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~-~G--G~~~~~~~--~~-~---g--~-~-~~~~g~v~ 68 (146)
T cd08896 3 VLSRTI-DAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLR-PG--GAFRTVMR--GP-D---G--E-E-FPNPGCFL 68 (146)
T ss_pred EEEEEe-CCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEee-cC--cEEEEEEE--CC-C---C--C-E-ecceEEEE
Confidence 467889 99999999999999999899852 222222111 11 33444321 11 2 2 1 0 13456788
Q ss_pred EEecCCCeEEEEEe--ecccce-e-eEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030202 95 AINAEEMTLTYSIV--DGNVGF-Y-GYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 95 ~~D~~~~~~~y~v~--~g~~p~-~-~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~~le~~~~ 169 (181)
++++ ++++.|+-. ++..+. . ....+++|++.++||+++.+..+.+. ...+... .-+..|...+..+|++++.
T Consensus 69 ~i~p-~~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~~gT~Ltl~~~~~~~--~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 69 EVVP-GERLVFTDALTPGWRPAEKPFMTAIITFEDEGGGTRYTARARHWTE--ADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeC-CCEEEEEEeecCCcCCCCCCcEEEEEEEEecCCcEEEEEEEEeCCH--HHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9998 577777632 221111 1 13568999998889999986443221 1111111 1135667777777777664
No 35
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.58 E-value=6.9e-06 Score=61.53 Aligned_cols=134 Identities=14% Similarity=0.120 Sum_probs=78.3
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccc--eeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTL--TTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA 95 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v--~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~ 95 (181)
.++..| +||+++||+++.|-..+.+|+..- ..+.....+ -.+| ..+.... .+ + | . .....=++++
T Consensus 3 ~i~r~~-~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---g--~--~~~~~g~~~~ 70 (143)
T cd08900 3 TLERTY-PAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFD-FRVGGREVSRGG--PK-G---G--P--EITVEARYHD 70 (143)
T ss_pred EEEEEe-CCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEe-cCCCCEEEEEEE--CC-C---C--C--EEeeeEEEEE
Confidence 457788 999999999999999999998531 112211111 1223 4444321 11 2 2 1 1245668888
Q ss_pred EecCCCeEEEEEee--cccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202 96 INAEEMTLTYSIVD--GNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL 168 (181)
Q Consensus 96 ~D~~~~~~~y~v~~--g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~ 168 (181)
+++ ++++.|+-.. ...+......++.|.+.++||+++.+...-..... +. ...+..|-..+..+|++++
T Consensus 71 ~~p-~~~l~~t~~~~~~~~~~~~s~v~~~l~~~~~gT~l~~~~~~~~~~~~--~~-~~~~~~GW~~~l~~L~~~l 141 (143)
T cd08900 71 IVP-DERIVYTYTMHIGGTLLSASLATVEFAPEGGGTRLTLTEQGAFLDGD--DD-PAGREQGTAALLDNLAAEL 141 (143)
T ss_pred ecC-CceEEEEEeeccCCccccceEEEEEEEECCCCEEEEEEEEEeccccc--ch-hhhHHHHHHHHHHHHHHHH
Confidence 987 6787776432 22222234578999998888999998665322111 11 2234555555556666655
No 36
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.55 E-value=1.1e-06 Score=66.54 Aligned_cols=133 Identities=9% Similarity=0.077 Sum_probs=88.7
Q ss_pred EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202 20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE 99 (181)
Q Consensus 20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~ 99 (181)
.+.-+ +.+|+++++++.|...||+++|.+..+.+.+..+...-+--.+.+ . | . .+++.-|.+ .++.
T Consensus 6 ~s~lv-~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~------k--~--i--~e~F~Trv~-~~~~ 71 (146)
T COG2867 6 RTALV-PYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGF------K--G--I--RETFTTRVT-LKPT 71 (146)
T ss_pred eeeec-cCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEh------h--h--e--eeeeeeeee-ecCc
Confidence 34556 999999999999999999999999988887654433222222221 1 2 1 113444443 3344
Q ss_pred CCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202 100 EMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL 168 (181)
Q Consensus 100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~ 168 (181)
.+.+.=+.++| |++...+.++++|.+ ++|+|...++|+...-.....+..++..+...|.+.+++++
T Consensus 72 ~~~I~~~l~~G--PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA 139 (146)
T COG2867 72 ARSIDMKLIDG--PFKYLKGGWQFTPLSEDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRA 139 (146)
T ss_pred hhhhhhhhhcC--ChhhhcCceEEEECCCCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555655 457778899999966 57999999999976533333345667777777777777765
No 37
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.55 E-value=4.3e-06 Score=61.66 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=64.3
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
.+++.| +||+++||+++.|-..+.+|+..........| |..+... | .+.=+++++++
T Consensus 3 ~~~r~i-~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~~G-----G~~~~~~----------g-------~~~g~~~~i~p 59 (126)
T cd08892 3 SLTETF-QVPAEELYEALTDEERVQAFTRSPAKVDAKVG-----GKFSLFG----------G-------NITGEFVELVP 59 (126)
T ss_pred EEEEEE-CCCHHHHHHHHCCHHHHHhhcCCCceecCCCC-----CEEEEeC----------C-------ceEEEEEEEcC
Confidence 467888 99999999999999999899853222222112 3333321 2 24456888887
Q ss_pred CCCeEEEEEeecccce-eeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202 99 EEMTLTYSIVDGNVGF-YGYVSTLTVAPKENGCYIEWKYEVEPV 141 (181)
Q Consensus 99 ~~~~~~y~v~~g~~p~-~~~~~t~~v~p~~~gT~v~W~~~~~p~ 141 (181)
+++++|+-.....+. .....++.|++.++||+|+.+-..-|.
T Consensus 60 -~~~l~~~w~~~~~~~~~~s~v~~~l~~~~~gT~ltl~~~g~~~ 102 (126)
T cd08892 60 -GKKIVQKWRFKSWPEGHYSTVTLTFTEKDDETELKLTQTGVPA 102 (126)
T ss_pred -CCEEEEEEEcCCCCCCCcEEEEEEEEECCCCEEEEEEEECCCC
Confidence 567766544222221 234678999998788999888776654
No 38
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.50 E-value=4.1e-06 Score=62.45 Aligned_cols=128 Identities=12% Similarity=0.017 Sum_probs=77.9
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
..++.| +||+++||+++.+-..+.+|++.-...+...| |..+. .+. + .+ + .+.=+++++++
T Consensus 3 ~~~~~i-~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~~G-----g~~~~-~~~--~-~~--~-------~~~g~~~~~~p 63 (136)
T cd08901 3 KTAMLI-RRPVAEVFEAFVDPEITTKFWFTGSSGRLEEG-----KTVTW-DWE--M-YG--A-------SVPVNVLEIEP 63 (136)
T ss_pred eEEEEe-cCCHHHHHHHhcCHHHhccccccCCCccccCC-----CEEEE-EEE--c-cC--C-------ceEEEEEEEcC
Confidence 467889 99999999999999999998754222222222 33333 221 1 11 1 34557888887
Q ss_pred CCCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCCCCHHHHH--HHHHHHHHHHHHHHHHHHhhh
Q 030202 99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKGWRLEDLD--CFISSGLQVMARRMKEALQAY 171 (181)
Q Consensus 99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~~~~~~~--~~~~~gl~~l~~~le~~~~~~ 171 (181)
++++.|+-.... + ....+++|.+.+ +||+++-+-..-|.. ..+.+. .....|...+...|+++++++
T Consensus 64 -~~~l~~~w~~~~-~--~s~v~~~l~~~~~ggT~ltl~~~~~~~~--~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 64 -NKRIVIEWGDPG-E--PTTVEWTFEELDDGRTFVTITESGFPGT--DDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred -CCEEEEEecCCC-C--CEEEEEEEEECCCCcEEEEEEECCCCCC--cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 678888755321 1 245789999988 679998875433321 221111 113456666667777776554
No 39
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.48 E-value=8.7e-06 Score=61.46 Aligned_cols=131 Identities=13% Similarity=0.140 Sum_probs=75.6
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCccccccc-c-------eeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPT-L-------TTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTK 90 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v-------~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~ 90 (181)
+.+++| +||+++||+++.| .+.+|++. . ..|.. +-..| |..+... + + | . . ...
T Consensus 3 ~~~~~i-~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~-d~~~G--G~~~~~~----~-~---g--~-~--~~~ 63 (149)
T cd08891 3 RKSVTV-PAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVF-EPRAG--GRWYEIG----E-D---G--T-E--CEW 63 (149)
T ss_pred EEEEEe-cCCHHHHHHHHHh--chhhccCCCcccccCCCccEEE-cccCC--cEEEEec----C-C---C--c-E--ece
Confidence 467889 9999999999998 47788752 1 22333 21111 3333221 1 2 3 1 1 234
Q ss_pred EEEEEEecCCCeEEEEEeec--ccce--eeEEEEEEEEEcC-CceEEEEEEEEeeCCCC--CHHHHHHHHHHHHHHHHHH
Q 030202 91 QKLLAINAEEMTLTYSIVDG--NVGF--YGYVSTLTVAPKE-NGCYIEWKYEVEPVKGW--RLEDLDCFISSGLQVMARR 163 (181)
Q Consensus 91 Erl~~~D~~~~~~~y~v~~g--~~p~--~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~--~~~~~~~~~~~gl~~l~~~ 163 (181)
=+++++++ +++++|+-... ..+. ..-..+++|++.+ +||+|+.+...-+.... ........+..|-..+..+
T Consensus 64 g~v~~v~p-~~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~ 142 (149)
T cd08891 64 GTVLAWEP-PSRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLER 142 (149)
T ss_pred EEEEEEcC-CCEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHH
Confidence 67888887 57887764411 1111 1346789999998 78999988665432110 1122223355666666666
Q ss_pred HHHHHh
Q 030202 164 MKEALQ 169 (181)
Q Consensus 164 le~~~~ 169 (181)
|++++.
T Consensus 143 L~~~l~ 148 (149)
T cd08891 143 YAAAAE 148 (149)
T ss_pred HHHHhc
Confidence 666654
No 40
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.46 E-value=5.1e-06 Score=62.47 Aligned_cols=132 Identities=17% Similarity=0.268 Sum_probs=70.7
Q ss_pred EEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCC
Q 030202 21 CEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEE 100 (181)
Q Consensus 21 ~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~ 100 (181)
+.+| ++|+++||++|.|..++..-+|++.+.+... +. --+.++.--+ |..+ .-..+=++...+++.
T Consensus 2 s~~v-~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~-~~~~~~v~vG---~i~~--------~~~g~~~~~~~~~~~ 67 (140)
T PF06240_consen 2 SFEV-PAPPEKVWAFLSDPENLARCIPGVESIEKVG-DE-YKGKVKVKVG---PIKG--------TFDGEVRITEIDPPE 67 (140)
T ss_dssp EEEE-CS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TE-EEEEEEEESC---CCEE--------EEEEEEEEEEEETTT
T ss_pred cEEe-cCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cE-EEEEEEEEec---cEEE--------EEEEEEEEEEcCCCc
Confidence 5678 9999999999999999988889988777654 21 1122221111 1000 002344566777754
Q ss_pred Ce-EEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCC---CCCHHHHHHHHHHHHHHHHHHHHHH
Q 030202 101 MT-LTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVK---GWRLEDLDCFISSGLQVMARRMKEA 167 (181)
Q Consensus 101 ~~-~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~---~~~~~~~~~~~~~gl~~l~~~le~~ 167 (181)
+. +..+....... ......+++...++ +|+|+|..+++... ......+....+..++.+.+.|++.
T Consensus 68 ~~~~~~~g~g~~~~-~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~ 138 (140)
T PF06240_consen 68 SYTLEFEGRGRGGG-SSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERK 138 (140)
T ss_dssp EEEEEEEEEECTCC-EEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEeeeeccCCccc-eEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 33333322222 23345555655443 49999999998532 1122223344444445555555443
No 41
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.43 E-value=4.7e-06 Score=60.16 Aligned_cols=120 Identities=21% Similarity=0.279 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeEE
Q 030202 26 GVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLT 104 (181)
Q Consensus 26 ~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~~ 104 (181)
+||+++||+++.+-..+.+|++. ..... +- .+| ..+... + ++ + . ....=+++++++ ++.+.
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~-~~~~~-~~---~~Gg~~~~~~----~-~g--~----~-~~~~~~v~~~~p-~~~i~ 62 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTT-SEAEM-DF---RPGGSFRFMD----P-DG--G----E-FGFDGTVLEVEP-PERIV 62 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEE-EEEEE-EC---STTEEEEEEE----T-TS--E----E-EEEEEEEEEEET-TTEEE
T ss_pred CcCHHHHHHHHCCHhHHhhccCC-Cccee-ee---ecCCEEEEEe----c-CC--C----C-ceeeEEEEEEeC-CEEEE
Confidence 69999999999999999999321 11222 11 223 455511 1 22 1 1 134445899988 57788
Q ss_pred EEEeecccc-eeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHH-HHHHHHHHHHHHHHHH
Q 030202 105 YSIVDGNVG-FYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCF-ISSGLQVMARRMKEAL 168 (181)
Q Consensus 105 y~v~~g~~p-~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~-~~~gl~~l~~~le~~~ 168 (181)
|+......+ -.....+++|.+.+++|+|+-+..-.+.. ..... +..|.+.+..+|++++
T Consensus 63 ~~~~~~~~~~~~~~~v~~~~~~~~~~T~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 63 FTWRMPDDPDGPESRVTFEFEEEGGGTRLTLTHSGFPDD-----DEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp EEEEEETSSSCEEEEEEEEEEEETTEEEEEEEEEEEHSH-----HHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEEEccCCCCCCceEEEEEEEEcCCcEEEEEEEEcCCcc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 885543322 33567889999977789998887544431 11121 5555555556666555
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00015 Score=55.21 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=73.7
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
.++..| ++|+++||+++.|-..+.+|+. -..+.. +...++ +....+.. + + | + ...+..++.++++
T Consensus 11 ~~er~i-~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~-d~r~gg-~~~~~~~~---~-~---g---~-~~~~~~~~~~v~p 75 (149)
T COG3832 11 EIERLI-DAPPEKVFEALTDPELLARWFM-PGGAEF-DARTGG-GERVRFRG---P-D---G---P-VHSFEGEYLEVVP 75 (149)
T ss_pred EEEEee-cCCHHHHHHHhcCHHHHHhhcC-CCCCcc-ceecCC-ceEEeeec---C-C---C---C-eeecceEEEEEcC
Confidence 457788 9999999999999999999998 322211 111110 12222222 1 2 2 1 1256778888988
Q ss_pred CCCeEEEE--EeecccceeeEEEEEEEEEcCCc--eEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHHHHHHh
Q 030202 99 EEMTLTYS--IVDGNVGFYGYVSTLTVAPKENG--CYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 99 ~~~~~~y~--v~~g~~p~~~~~~t~~v~p~~~g--T~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~le~~~~ 169 (181)
++++.|+ ..+...|...-..+++|++..+| |+..-...+.-.. ..+.. ...+..|...+...|++.+.
T Consensus 76 -~~rIv~tw~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 76 -PERIVFTWDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGGGFLE--DEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred -CcEEEEEeccCCCCCcccCceEEEEEEEecCCCcEEEEEEeeccccc--hhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 5555544 44444343345778888887654 2222222221111 11111 11247777778777777664
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.98 E-value=0.00014 Score=54.21 Aligned_cols=89 Identities=8% Similarity=-0.008 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeEE
Q 030202 26 GVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLT 104 (181)
Q Consensus 26 ~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~~ 104 (181)
+||+++||+++.|-..+.+|+-. ..++. + -.+| .-+.+. | .+.=+++++++ ++++.
T Consensus 2 ~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~-d---~~~GG~f~~~~----------~-------~~~G~~~ev~p-p~rlv 58 (132)
T PTZ00220 2 YVPPEVLYNAFLDAYTLTRLSLG-SPAEM-D---AKVGGKFSLFN----------G-------SVEGEFTELEK-PKKIV 58 (132)
T ss_pred CCCHHHHHHHHcCHHHHHHHhcC-CCccc-c---CCcCCEEEEec----------C-------ceEEEEEEEcC-CCEEE
Confidence 89999999999998888888521 11222 1 1233 333332 1 24446788888 45665
Q ss_pred EEEeecc-cceeeEEEEEEEEEcC-CceEEEEEEE
Q 030202 105 YSIVDGN-VGFYGYVSTLTVAPKE-NGCYIEWKYE 137 (181)
Q Consensus 105 y~v~~g~-~p~~~~~~t~~v~p~~-~gT~v~W~~~ 137 (181)
|+-.-.. .+-.....+++|++.+ ++|+++-+..
T Consensus 59 ~tw~~~~~~~~~~s~vt~~~~~~~~g~T~lt~~~~ 93 (132)
T PTZ00220 59 QKWRFRDWEEDVYSKVTIEFRAVEEDHTELKLTQT 93 (132)
T ss_pred EEEecCCCCCCCceEEEEEEEeCCCCcEEEEEEEe
Confidence 5443221 1111246789999976 4799998877
No 44
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.96 E-value=0.00098 Score=53.60 Aligned_cols=122 Identities=10% Similarity=-0.045 Sum_probs=75.9
Q ss_pred EEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCC--CCCCCCCcCccceEEEEEEEEec
Q 030202 21 CEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPV--DNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 21 ~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~--~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
..+| ++|+++||++|.|....++|.+.+.++++++..+....-++...-...|. .. . ..+.-+....+.
T Consensus 50 e~~v-~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~--R------DfV~l~~~~~~~ 120 (205)
T cd08874 50 AGVI-KAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQP--R------DFCCLQVEAKEG 120 (205)
T ss_pred EEEE-cCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCC--C------eEEEEEEEEECC
Confidence 5578 99999999999999999999999999988763332233344443212221 11 1 133333333333
Q ss_pred CCCeEEEEEeec-cc--------ceeeEEEEEEEEEc---CC-ceEEEEEEEEeeCCCCCHHHHHH
Q 030202 99 EEMTLTYSIVDG-NV--------GFYGYVSTLTVAPK---EN-GCYIEWKYEVEPVKGWRLEDLDC 151 (181)
Q Consensus 99 ~~~~~~y~v~~g-~~--------p~~~~~~t~~v~p~---~~-gT~v~W~~~~~p~~~~~~~~~~~ 151 (181)
+...+.-+-+.. .. ......+-+.++|. ++ .|+|++....+|..|..|..+.+
T Consensus 121 ~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N 186 (205)
T cd08874 121 ELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLS 186 (205)
T ss_pred CcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHh
Confidence 333333333332 11 23466778889998 76 49999999999985555655543
No 45
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.60 E-value=0.0053 Score=49.26 Aligned_cols=139 Identities=11% Similarity=0.180 Sum_probs=77.5
Q ss_pred EEEEEEeCCCHHHHH-HHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecC---CCCCCCCCcCccceEEEEEE
Q 030202 19 RACEELTGVKAEQIW-AFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTP---VDNKDDDHEQSVNWTKQKLL 94 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW-~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~---~~g~~G~~~~~~~~~~Erl~ 94 (181)
+++.+| ++|+++++ .++.|.+..++|.+.+..+++++-.+..---++.... ..| ..+ . ..+.-+..
T Consensus 52 k~e~~i-~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~-p~p~~~vs~--R------D~V~~~~~ 121 (209)
T cd08905 52 RLEVVV-DQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAA-ETAGNVVGP--R------DFVSVRCA 121 (209)
T ss_pred EEEEEe-cCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEec-cCCCCccCc--c------ceEEEEEE
Confidence 356677 99999999 6677999999999999888776522111111233221 011 111 1 13333333
Q ss_pred EEecCCCeE-EEEEeeccc-------ceeeEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHHHH-HHHHHHHHHHH
Q 030202 95 AINAEEMTL-TYSIVDGNV-------GFYGYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDLDC-FISSGLQVMAR 162 (181)
Q Consensus 95 ~~D~~~~~~-~y~v~~g~~-------p~~~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~~~-~~~~gl~~l~~ 162 (181)
..+..+..+ ..++..... ......+-+.|+|.++ +|+|+|.+..+|.+ ..|..+.+ ++....-...+
T Consensus 122 ~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG-~iP~~lvN~~~~~~~~~~~~ 200 (209)
T cd08905 122 KRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKG-WLPKSIINQVLSQTQVDFAN 200 (209)
T ss_pred EEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCC-CCCHHHHHHHhHHhHHHHHH
Confidence 333333222 222221111 2446677888999864 49999999999974 45544432 23444444444
Q ss_pred HHHHHH
Q 030202 163 RMKEAL 168 (181)
Q Consensus 163 ~le~~~ 168 (181)
.|++++
T Consensus 201 ~Lr~~~ 206 (209)
T cd08905 201 HLRQRM 206 (209)
T ss_pred HHHHHH
Confidence 455544
No 46
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.58 E-value=0.0091 Score=49.06 Aligned_cols=138 Identities=10% Similarity=0.102 Sum_probs=80.4
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE--E
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA--I 96 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~--~ 96 (181)
++..++ ++|+++++++|.|....++|.+.+.++++++--+...+-++...-...|... . ..+.-+-.. .
T Consensus 80 k~e~~v-d~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~--R------DfV~~~s~~~~~ 150 (235)
T cd08873 80 CVELKV-QTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKP--N------DFVLLVSRRKPA 150 (235)
T ss_pred EEEEEe-cCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCC--c------eEEEEEEEEecc
Confidence 556668 9999999999999999999999999998876222223334433211112111 1 123322222 1
Q ss_pred ecCC-CeEEEEEeecc--------cceeeEEEEEEEEEcCC-ceEEEEEEEEeeCC----CCCHHHHHHHHHHHHHHHHH
Q 030202 97 NAEE-MTLTYSIVDGN--------VGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVK----GWRLEDLDCFISSGLQVMAR 162 (181)
Q Consensus 97 D~~~-~~~~y~v~~g~--------~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~----~~~~~~~~~~~~~gl~~l~~ 162 (181)
+... ..+...-+..+ .....+.+-+.+.|.++ +|.|++....+|.- .-...++...|...+..+.+
T Consensus 151 ~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (235)
T cd08873 151 TDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQ 230 (235)
T ss_pred CCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHH
Confidence 2211 23343334311 13557788899999986 59999999999831 01223344444445555554
Q ss_pred HHH
Q 030202 163 RMK 165 (181)
Q Consensus 163 ~le 165 (181)
.|+
T Consensus 231 ~~~ 233 (235)
T cd08873 231 FLV 233 (235)
T ss_pred Hhc
Confidence 443
No 47
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.56 E-value=0.017 Score=46.23 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=87.9
Q ss_pred CeeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCC-CCceEEEEeeeecCCCCCCCCCcCccceEEEEE
Q 030202 15 KWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISG-QPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKL 93 (181)
Q Consensus 15 ~w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~-~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl 93 (181)
...=++..++.++|++.+.+++.|.....+|.+.+..++.++-... +.--++...-...|... . ..+--|.
T Consensus 49 ~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~--R------D~V~~r~ 120 (209)
T cd08870 49 LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSD--R------EYVIARR 120 (209)
T ss_pred ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCC--c------eEEEEEE
Confidence 3445666677467999999999999889999999988877653221 12223333221123221 1 1343343
Q ss_pred EEEe-cCCCeEEEEEeec-------ccceeeEEEEEEEEEc--CC-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHH
Q 030202 94 LAIN-AEEMTLTYSIVDG-------NVGFYGYVSTLTVAPK--EN-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMA 161 (181)
Q Consensus 94 ~~~D-~~~~~~~y~v~~g-------~~p~~~~~~t~~v~p~--~~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~ 161 (181)
...+ +....+....+.. ...+..+.+.+.++|. ++ +|.+++++..+|.. ..+.-+ ..+...++-.+.
T Consensus 121 ~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G-~IP~wlvN~~~~~~~~~~l 199 (209)
T cd08870 121 LWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDG-GIPRELAKLAVKRGMPGFL 199 (209)
T ss_pred EEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCC-CCCHHHHHHHHHhhhHHHH
Confidence 3344 2222222322322 2236688899999998 54 59999999999853 344444 344666666666
Q ss_pred HHHHHHHhh
Q 030202 162 RRMKEALQA 170 (181)
Q Consensus 162 ~~le~~~~~ 170 (181)
+.|.+++.+
T Consensus 200 ~~l~~a~~~ 208 (209)
T cd08870 200 KKLENALRK 208 (209)
T ss_pred HHHHHHHhc
Confidence 667666643
No 48
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.48 E-value=0.0074 Score=49.59 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=77.9
Q ss_pred eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeeec-CCCCCCCCCcCccceEEEEE
Q 030202 17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKT-PVDNKDDDHEQSVNWTKQKL 93 (181)
Q Consensus 17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~-~~~g~~G~~~~~~~~~~Erl 93 (181)
.=+++.++ ++|++++.++|.|....++|.+.+.++++++ +++.. ++.+.-... |..+ . ..+.-+-
T Consensus 79 ~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~---vY~~~~pPw~Pvk~--R------D~V~~~s 146 (236)
T cd08914 79 SVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ---IYHITCPIVNNDKP--K------DLVVLVS 146 (236)
T ss_pred EEEEEEEE-cCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC---EEEEecCCCCCCCC--c------eEEEEEE
Confidence 34556688 9999999999999999999999999998865 32222 455442111 2221 1 0222211
Q ss_pred EE-EecCC--CeEEEEEeec-ccc-------eee-EEEEEEEEEcCC-ceEEEEEEEEeeCCCCCH------HHHHHHHH
Q 030202 94 LA-INAEE--MTLTYSIVDG-NVG-------FYG-YVSTLTVAPKEN-GCYIEWKYEVEPVKGWRL------EDLDCFIS 154 (181)
Q Consensus 94 ~~-~D~~~--~~~~y~v~~g-~~p-------~~~-~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~------~~~~~~~~ 154 (181)
.. ..+.+ ..+.-.-+.. .+| +.. ..+. .+.|.++ +|.|++....+| |..+ .++-.-+.
T Consensus 147 ~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP--g~lp~~~~n~~~~~~~~~ 223 (236)
T cd08914 147 RRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA--SILPYFAGNLGGWSKSIE 223 (236)
T ss_pred EEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC--ccchheEEecchhhhHHH
Confidence 11 12123 2223222322 222 334 4444 7889876 699999999999 3332 33334455
Q ss_pred HHHHHHHHHHHH
Q 030202 155 SGLQVMARRMKE 166 (181)
Q Consensus 155 ~gl~~l~~~le~ 166 (181)
..+.++.+.||.
T Consensus 224 ~~~~~~~~~~~~ 235 (236)
T cd08914 224 ETAASCIQFLEN 235 (236)
T ss_pred HHHHHHHHHHhc
Confidence 555666666553
No 49
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.46 E-value=0.024 Score=45.66 Aligned_cols=142 Identities=12% Similarity=0.146 Sum_probs=75.6
Q ss_pred EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202 20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE 99 (181)
Q Consensus 20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~ 99 (181)
++.+|+++|++.+++++.|.+...+|.+.+..+..++.-+..---++...-...|..+ . ..+.-+...-++.
T Consensus 51 ~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~--R------DfV~~r~~~~~~~ 122 (222)
T cd08871 51 VSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKN--R------DFVNLRSWLEFGG 122 (222)
T ss_pred EEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCC--C------eEEEEEEEEeCCC
Confidence 3455547999999999999988899999998887765222111112222111122221 1 1333333333332
Q ss_pred CCeE-EEEEeecccc-------eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHH-HHHHHHHHHHHHHHHHHh
Q 030202 100 EMTL-TYSIVDGNVG-------FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDC-FISSGLQVMARRMKEALQ 169 (181)
Q Consensus 100 ~~~~-~y~v~~g~~p-------~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~-~~~~gl~~l~~~le~~~~ 169 (181)
...+ ..++.....| ...+.+-+.++|.++ +|+|+|....+|.+ ..+.-+.+ +...+.-.+.+.|++++.
T Consensus 123 ~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G-~IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 123 EYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKG-SLPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred EEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCC-CcCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2122 2222211112 334567788899865 69999999999873 44444432 223333333344444443
Q ss_pred h
Q 030202 170 A 170 (181)
Q Consensus 170 ~ 170 (181)
.
T Consensus 202 ~ 202 (222)
T cd08871 202 K 202 (222)
T ss_pred H
Confidence 3
No 50
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.41 E-value=0.023 Score=45.44 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=84.4
Q ss_pred EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCC-CCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISG-QPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~-~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
+..++.++|++.+.+++.|.+...+|.+.+.++++++.... .--.+....-...|... . ..+-.|....|+
T Consensus 49 ~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~--R------D~V~~r~~~~~~ 120 (207)
T cd08911 49 VYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFAN--R------DYVYVRRYIIDE 120 (207)
T ss_pred EEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCC--c------cEEEEEEEEEcC
Confidence 43445599999999999999999999999998887753211 11112222111122221 1 155556556666
Q ss_pred CCCeE---EEEEee-------cccceeeEEEEEEEEEcC----CceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHHH
Q 030202 99 EEMTL---TYSIVD-------GNVGFYGYVSTLTVAPKE----NGCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMARR 163 (181)
Q Consensus 99 ~~~~~---~y~v~~-------g~~p~~~~~~t~~v~p~~----~gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~~ 163 (181)
++..+ .+++.. |...+..+.+.+.++|.+ +||.+++.+..+|. |..+.-+. .+...++-.+.+.
T Consensus 121 ~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg-G~IP~~lvN~~~~~~~~~~l~~ 199 (207)
T cd08911 121 ENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG-VNIPSYITSWVAMSGMPDFLER 199 (207)
T ss_pred CCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC-CccCHHHHHHHHHhhccHHHHH
Confidence 54331 222221 112366888999999973 47999988887776 44444443 3456666666666
Q ss_pred HHHHHhh
Q 030202 164 MKEALQA 170 (181)
Q Consensus 164 le~~~~~ 170 (181)
|++++..
T Consensus 200 l~~a~~~ 206 (207)
T cd08911 200 LRNAALK 206 (207)
T ss_pred HHHHHhc
Confidence 6666543
No 51
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=97.39 E-value=0.034 Score=42.57 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=76.7
Q ss_pred eeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEee-eecCCCCCCCCCcCccceEEEEEE
Q 030202 16 WQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAG-FKTPVDNKDDDHEQSVNWTKQKLL 94 (181)
Q Consensus 16 w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~-~~~~~~g~~G~~~~~~~~~~Erl~ 94 (181)
..-+...+| ++|+++|++++.|....++|.|.+..++.++.-+... .+....+ ...|..+ ...+--+-.
T Consensus 39 ~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~-~i~~~~~~~p~p~~~--------Rdfv~~~~~ 108 (193)
T cd00177 39 KLLKAEGVI-PASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHT-DIIYYKTKPPWPVSP--------RDFVYLRRR 108 (193)
T ss_pred eeEEEEEEE-CCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCe-EEEEEEeeCCCccCC--------ccEEEEEEE
Confidence 344567778 9999999999999999999999999888776322222 2323222 1111111 012222222
Q ss_pred EEecCCC-eEEEEEeecc-cc-----e--eeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHH
Q 030202 95 AINAEEM-TLTYSIVDGN-VG-----F--YGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARR 163 (181)
Q Consensus 95 ~~D~~~~-~~~y~v~~g~-~p-----~--~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~ 163 (181)
..++++. .+...-++.+ .| + ..+.+-+.++|.++ +|++++...++|.. ..+..+ ...+......+.+.
T Consensus 109 ~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g-~iP~~~~~~~~~~~~~~~~~~ 187 (193)
T cd00177 109 RKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKG-SIPKSLVNSAAKKQLASFLKD 187 (193)
T ss_pred EEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCC-CccHHHHHhhhhhccHHHHHH
Confidence 2233221 2222222221 11 2 23345677889865 59999999999974 333333 33344444444444
Q ss_pred HHH
Q 030202 164 MKE 166 (181)
Q Consensus 164 le~ 166 (181)
++.
T Consensus 188 ~~~ 190 (193)
T cd00177 188 LRK 190 (193)
T ss_pred HHH
Confidence 433
No 52
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.38 E-value=0.02 Score=45.97 Aligned_cols=138 Identities=10% Similarity=0.058 Sum_probs=73.8
Q ss_pred EEEEEEeCCCHHHHH-HHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeee--cCCCCCCCCCcCccceEEEEE
Q 030202 19 RACEELTGVKAEQIW-AFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFK--TPVDNKDDDHEQSVNWTKQKL 93 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW-~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~--~~~~g~~G~~~~~~~~~~Erl 93 (181)
++..+| ++|++.++ +++.|.+..++|.+.+.++++++ ++...+ ++.+.... .|..+ . -.+.-|-
T Consensus 52 k~~~~v-~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i--~Y~v~~p~~~~pv~~--R------DfV~~r~ 120 (209)
T cd08906 52 ILKAFM-QCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLV--SYDVAAGAAGGVVSP--R------DFVNVRR 120 (209)
T ss_pred EEEEEE-cCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEE--EEEEccccccCCCCC--C------ceEEEEE
Confidence 667788 99999998 58899999999999999988765 222222 22222100 01111 1 1344344
Q ss_pred EEEecCCCe-EEEEEeecccc-------ee-eEEEEEEEEE-cCC-ceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHH
Q 030202 94 LAINAEEMT-LTYSIVDGNVG-------FY-GYVSTLTVAP-KEN-GCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMA 161 (181)
Q Consensus 94 ~~~D~~~~~-~~y~v~~g~~p-------~~-~~~~t~~v~p-~~~-gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~ 161 (181)
..-+..... +..++....+| .. ...+.+-..+ .++ +|.++|.+..+|.+ ..|.-+. .++....-...
T Consensus 121 ~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~~~~ 199 (209)
T cd08906 121 IERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMFEFA 199 (209)
T ss_pred EEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 333333322 23333322222 12 2223333333 344 59999999999974 4554443 33333433444
Q ss_pred HHHHHHH
Q 030202 162 RRMKEAL 168 (181)
Q Consensus 162 ~~le~~~ 168 (181)
..|++++
T Consensus 200 ~~LR~~~ 206 (209)
T cd08906 200 SHLRQRI 206 (209)
T ss_pred HHHHHHH
Confidence 4444444
No 53
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=97.24 E-value=0.035 Score=44.09 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=68.5
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA 98 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~ 98 (181)
+++.+| ++++++|++.+.|.. .+|.+.+.++++++--+..---++...-...|... ...+.-|....+.
T Consensus 47 K~~~~v-~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~--------RDfV~~r~~~~~~ 115 (197)
T cd08869 47 RASTEV-EAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPT--------RDYVVLRTWRTDL 115 (197)
T ss_pred EEEEEe-CCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCC--------ceEEEEEEEEecC
Confidence 667888 999999999887753 79999999988865221111112222211122111 1134444444333
Q ss_pred CC--CeEEEEEeec--ccc-----eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH
Q 030202 99 EE--MTLTYSIVDG--NVG-----FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL 149 (181)
Q Consensus 99 ~~--~~~~y~v~~g--~~p-----~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~ 149 (181)
++ ..+...-++. ..| ...+.+-+.++|.++ +|+|+|....+|. |..+.-+
T Consensus 116 ~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~-G~iP~wl 175 (197)
T cd08869 116 PKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLR-GRSPEWY 175 (197)
T ss_pred CCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCC-CCCCcee
Confidence 22 2333333321 222 345567788999876 5999999999996 3444333
No 54
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.24 E-value=0.013 Score=46.98 Aligned_cols=138 Identities=12% Similarity=0.184 Sum_probs=80.6
Q ss_pred eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEee-eecCCCCCCCCCcCccceEEEEEE--
Q 030202 18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAG-FKTPVDNKDDDHEQSVNWTKQKLL-- 94 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~-~~~~~~g~~G~~~~~~~~~~Erl~-- 94 (181)
=++..+| ++|++.+.+++.|.+.+++|.|.+..+..+...+. --.+-...+ ...|.. -+|-+.
T Consensus 48 ~k~e~~i-~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~-~~~v~y~~~~~PwPv~------------~RD~v~~~ 113 (215)
T cd08877 48 LRMEGEI-DGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGR-ADKVCYLRVDLPWPLS------------NREAVFRG 113 (215)
T ss_pred EEEEEEe-cCChhHeEEEEehhhhHhhhcccceeeEEEeecCC-ceEEEEEEEeCceEec------------ceEEEEEE
Confidence 3567788 99999999999999999999999888876542211 011111111 011211 122221
Q ss_pred ----EEecCCCeEE--EEEee------------------cccceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHH
Q 030202 95 ----AINAEEMTLT--YSIVD------------------GNVGFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDL 149 (181)
Q Consensus 95 ----~~D~~~~~~~--y~v~~------------------g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~ 149 (181)
.+++ +..+. -+-+. +...+....+-+.++|.+++ |.+++.+..+|.....|..+
T Consensus 114 ~~~~~~~~-~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~l 192 (215)
T cd08877 114 FGVDRLEE-NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSL 192 (215)
T ss_pred EEEeeecc-CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHH
Confidence 1222 23332 11111 11124567778889998864 99999999999754355555
Q ss_pred HH-HHHHHHHHHHHHHHHHHhh
Q 030202 150 DC-FISSGLQVMARRMKEALQA 170 (181)
Q Consensus 150 ~~-~~~~gl~~l~~~le~~~~~ 170 (181)
.+ +.+.....+...|++++.+
T Consensus 193 iN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 193 LNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 33 3455555666666666543
No 55
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=97.20 E-value=0.0069 Score=46.52 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=40.2
Q ss_pred ecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEe---eCCCCCHHHH-HHHHHHHHHHHHHHH
Q 030202 97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVE---PVKGWRLEDL-DCFISSGLQVMARRM 164 (181)
Q Consensus 97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~---p~~~~~~~~~-~~~~~~gl~~l~~~l 164 (181)
++..++.+|++.-...|++ ..++++|.|.++||++++..+++ |.-|...+.+ ...+...|+...+.+
T Consensus 85 ~~g~~~g~~~~~~~G~P~~-~~G~~~L~~~~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~~ 155 (159)
T PF10698_consen 85 DDGRRTGTFTVSIPGAPVS-ISGTMRLRPDGGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQEFT 155 (159)
T ss_pred CCCeEEEEEEEEecCceEE-EEEEEEEecCCCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666554445644 68999999988899999998887 4333233322 333444444444333
No 56
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=97.14 E-value=0.055 Score=43.10 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=69.0
Q ss_pred eEEEEEEeCCCHHHHHH-HHhccCCcccccccceeEEEecCCCCCCceEEEEeeee--cCCCCCCCCCcCccceEEEEEE
Q 030202 18 GRACEELTGVKAEQIWA-FLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFK--TPVDNKDDDHEQSVNWTKQKLL 94 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~-~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~--~~~~g~~G~~~~~~~~~~Erl~ 94 (181)
=+++.+| ++|+++|++ ++.|.+..++|.+.+..+..++.-++..--++.+.... .|..+ . ..+.-|..
T Consensus 50 ~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~--R------DfV~~r~~ 120 (208)
T cd08868 50 FRLTGVL-DCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSP--R------DFVSLRHW 120 (208)
T ss_pred EEEEEEE-cCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccc--c------ceEEEEEE
Confidence 3456677 999999986 56799999999999998877652221111122222100 11111 1 13333433
Q ss_pred EEecCCCeEEEEEeecc-c-------ceeeEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHH
Q 030202 95 AINAEEMTLTYSIVDGN-V-------GFYGYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDL 149 (181)
Q Consensus 95 ~~D~~~~~~~y~v~~g~-~-------p~~~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~ 149 (181)
..++....+...-++.+ . ....+.+.+.++|.++ +|.|+|.+..+|. |..|.-+
T Consensus 121 ~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~-G~iP~~l 185 (208)
T cd08868 121 GIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLK-GWLPQYL 185 (208)
T ss_pred EecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCC-CCCccee
Confidence 34443333333333321 1 2335567788899753 4999999999997 3444333
No 57
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=97.09 E-value=0.056 Score=43.32 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=65.7
Q ss_pred eEEEEEEeCCCHHHHHHHHhccCCc--ccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202 18 GRACEELTGVKAEQIWAFLEDFFGL--DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA 95 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~~l~Df~~~--~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~ 95 (181)
=+++.+| +++++++++++.|..+. ++|.+.+.++++++--+....-+|... ..|. + +. ......+.-+...
T Consensus 48 ~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~--p~~~-~--~~-vs~RDfV~~~~~~ 120 (208)
T cd08903 48 YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVT--PSAA-M--KI-ISPRDFVDVVLVK 120 (208)
T ss_pred EEEEEEe-cCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEec--chhc-C--CC-cCCCceEEEEEEE
Confidence 4567778 99999999999887655 899999999888753222222233311 0110 0 00 0000123322222
Q ss_pred EecCC-CeEEEEEeecc-cc-----eee----EEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH
Q 030202 96 INAEE-MTLTYSIVDGN-VG-----FYG----YVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL 149 (181)
Q Consensus 96 ~D~~~-~~~~y~v~~g~-~p-----~~~----~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~ 149 (181)
..+++ ..+.+..++.+ .| ++. +...++..|.++ +|.|+|.+..+|. |..|..+
T Consensus 121 ~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP~~l 185 (208)
T cd08903 121 RYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLPQTV 185 (208)
T ss_pred ecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC-CCcCHHH
Confidence 22222 23334334442 22 222 233344444344 5999999999997 4455444
No 58
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.00 E-value=0.043 Score=45.22 Aligned_cols=112 Identities=10% Similarity=0.088 Sum_probs=66.8
Q ss_pred EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeec--CCCCCCCCCcCccceEEEEEEEE
Q 030202 19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKT--PVDNKDDDHEQSVNWTKQKLLAI 96 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~--~~~g~~G~~~~~~~~~~Erl~~~ 96 (181)
++..++ ++|+++++++|.|.+..++|.+.+.+|++++-.+..- .+..+..... |... . ..+.-+-..-
T Consensus 84 K~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~--R------DfV~~~s~~~ 153 (240)
T cd08913 84 KVEMVV-HVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSLSGHGKP--Q------DFVILASRRK 153 (240)
T ss_pred EEEEEE-cCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-EEEEEecCCCCCCCCC--C------eEEEEEEEEe
Confidence 455678 9999999999999999999999999998875222111 2444432111 1111 1 1222221112
Q ss_pred ecCCC---eEEEEEeecc-c-------ceeeEEEEEEEEEcCCc-eEEEEEEEEee
Q 030202 97 NAEEM---TLTYSIVDGN-V-------GFYGYVSTLTVAPKENG-CYIEWKYEVEP 140 (181)
Q Consensus 97 D~~~~---~~~y~v~~g~-~-------p~~~~~~t~~v~p~~~g-T~v~W~~~~~p 140 (181)
+.+.. .+.-..+..+ . ......+-+.+.|.+++ |+|+|....+|
T Consensus 154 ~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 154 PCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred ccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 11121 2333333322 2 24467788899998865 99999887777
No 59
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.098 Score=39.40 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=69.8
Q ss_pred EEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE--EecC
Q 030202 22 EELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA--INAE 99 (181)
Q Consensus 22 ~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~--~D~~ 99 (181)
.+| +||.|.||+.-+.-+++...-|--. ..+-+|..-..|+.-....+..+... | ..-+-|+++ +|+
T Consensus 8 ~~i-~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~eitqgtri~m~l~pfglp~--~------~tW~Arhte~~~d~- 76 (153)
T COG4276 8 TTI-TAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGSEITQGTRIAMGLTPFGLPA--G------LTWVARHTESGFDN- 76 (153)
T ss_pred eEe-cCCHHHHhhhhcCccHHHhcCCCcE-EeccCCCcccceeeeeecceeecCCC--C------ceEEEEeeecccCC-
Confidence 456 9999999999887777755444222 22223321122221111111111100 2 145566666 776
Q ss_pred CCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCC
Q 030202 100 EMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKG 143 (181)
Q Consensus 100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~ 143 (181)
..+|+=..+.+|+|.-+..-+-++.+.+++|.+.=...|++..+
T Consensus 77 ~~~FtDv~i~gPfp~~~WrHtH~F~~egg~TvliD~Vsye~p~g 120 (153)
T COG4276 77 GSRFTDVCITGPFPALNWRHTHNFVDEGGGTVLIDSVSYELPAG 120 (153)
T ss_pred cceeeeeeecCCccceeeEEEeeeecCCCcEEEEeeEEeeccCc
Confidence 56788888888888667888999999999999999999997644
No 60
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=96.85 E-value=0.18 Score=40.54 Aligned_cols=125 Identities=11% Similarity=0.036 Sum_probs=73.1
Q ss_pred eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202 18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA 95 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~ 95 (181)
=+++++| ++++++|...+.|- .++|.+.+..+.+++ ++...++ +...-.+.|... ...+.-|...
T Consensus 54 ~r~~~~i-~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~--Yy~~~~PwP~~~--------RD~V~~Rs~~ 120 (204)
T cd08908 54 WRTTIEV-PAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIY--QYVQNSMAPHPA--------RDYVVLRTWR 120 (204)
T ss_pred EEEEEEe-CCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEE--EEEccCCCCCCC--------cEEEEEEEEE
Confidence 3456677 99999999988766 689999988887764 3222232 222111123211 1144444443
Q ss_pred EecCCCeEEEE---Eeecccc-----eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHHHH
Q 030202 96 INAEEMTLTYS---IVDGNVG-----FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFISSG 156 (181)
Q Consensus 96 ~D~~~~~~~y~---v~~g~~p-----~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~~g 156 (181)
.+..+..+.-. +.....| +..+.+.+.++|.++ +|+|++....+|. |..+.-+.+.+...
T Consensus 121 ~~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg-G~iP~W~~N~~g~~ 189 (204)
T cd08908 121 TNLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR-GHMPEWYTKSFGHL 189 (204)
T ss_pred EeCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC-CCCcHHHHhhHHHH
Confidence 33333333222 2222223 335677788999886 5999999999997 45665555544433
No 61
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=96.75 E-value=0.19 Score=39.43 Aligned_cols=144 Identities=17% Similarity=0.233 Sum_probs=79.6
Q ss_pred CCeeeEEEEEEeCCCHHHHH-HHHhccCCcccccccceeEEEecCCCCCCceEEEEee-eec-CCCCCCCCCcCccceEE
Q 030202 14 PKWQGRACEELTGVKAEQIW-AFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAG-FKT-PVDNKDDDHEQSVNWTK 90 (181)
Q Consensus 14 ~~w~~~v~~~I~~Ap~e~VW-~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~-~~~-~~~g~~G~~~~~~~~~~ 90 (181)
+.-.=++...| +++++++. +++.|....++|.+.+..++.++--+.. ..+..... ... |..+ . ..+-
T Consensus 43 ~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~--R------Dfv~ 112 (206)
T smart00234 43 PGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNG-TVIYHYVSKFVAGPVSP--R------DFVF 112 (206)
T ss_pred ceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchhcccEEEEEEECCC-CeEEEEEEecccCcCCC--C------eEEE
Confidence 34555677788 99999855 5788999999999999988776522211 13333322 111 2221 1 1333
Q ss_pred EEEEEEecC-CCeEEEEEeecc-c-------ceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHH-HHHHHHHHHH
Q 030202 91 QKLLAINAE-EMTLTYSIVDGN-V-------GFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDL-DCFISSGLQV 159 (181)
Q Consensus 91 Erl~~~D~~-~~~~~y~v~~g~-~-------p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~ 159 (181)
-|-...++. ...+..+.+..+ . ....+.+-+.++|.+++ |+|+|....+|.+ ..+..+ ..++..+.-.
T Consensus 113 ~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G-~iP~~lvn~~~~~~~~~ 191 (206)
T smart00234 113 VRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKG-WLPHWLVRSLIKSGLAE 191 (206)
T ss_pred EEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCC-CccceeehhhhhhhHHH
Confidence 333333332 223333223222 1 13456778889998875 9999999999874 333333 2333444444
Q ss_pred HHHHHHHHH
Q 030202 160 MARRMKEAL 168 (181)
Q Consensus 160 l~~~le~~~ 168 (181)
+.+.+.+++
T Consensus 192 ~~~~~~~~~ 200 (206)
T smart00234 192 FAKTWVATL 200 (206)
T ss_pred HHHHHHHHH
Confidence 444444433
No 62
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.53 E-value=0.16 Score=38.81 Aligned_cols=121 Identities=16% Similarity=0.179 Sum_probs=64.7
Q ss_pred CCCHHHHHHHH-hccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeEE
Q 030202 26 GVKAEQIWAFL-EDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLT 104 (181)
Q Consensus 26 ~Ap~e~VW~~l-~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~~ 104 (181)
....++||.-| .-..+-..|.|++.+|++++..+ ..-.|.+.+ | + ..++|+++.+. ...+.
T Consensus 17 ~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~--~~~~R~v~f------g--~------~~v~E~v~~~~--~~~V~ 78 (149)
T PF08982_consen 17 VLTREQLWRGLVLKARNPQLFVPGIDSCEVLSESD--TVLTREVTF------G--G------ATVRERVTLYP--PERVD 78 (149)
T ss_dssp ---HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-S--SEEEEEEEE------T--T------EEEEEEEEEET--TTEEE
T ss_pred ccCHHHHHHHHHHHHhChhhCccccCeEEEEecCC--CeEEEEEEE------C--C------cEEEEEEEEeC--CcEEE
Confidence 45678999854 45566678899999999986432 346788887 2 2 17999988764 46888
Q ss_pred EEEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEe-e-CCCCCH------HHHHHHHHHHHHHHHHHHHHHHhh
Q 030202 105 YSIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVE-P-VKGWRL------EDLDCFISSGLQVMARRMKEALQA 170 (181)
Q Consensus 105 y~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~-p-~~~~~~------~~~~~~~~~gl~~l~~~le~~~~~ 170 (181)
|.... +-.-++.+...++| =.+++.++.. | ....++ +.....|+.+...-.+.+.+.+..
T Consensus 79 f~~~~------Gs~lt~~I~e~~~g~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~ 147 (149)
T PF08982_consen 79 FAQHD------GSSLTNIISEPEPGDLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKE 147 (149)
T ss_dssp ESSSB------EEEEEEEEEEEETTEEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EEcCC------CCEEEEEEecCCCCcEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 82111 12334444433344 4455555554 3 111111 223566777776666666666544
No 63
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=96.31 E-value=0.2 Score=40.06 Aligned_cols=143 Identities=12% Similarity=0.105 Sum_probs=81.8
Q ss_pred eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceE-EEEEEE
Q 030202 17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWT-KQKLLA 95 (181)
Q Consensus 17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~-~Erl~~ 95 (181)
.=++..++.+++++.+.+++.|.+...+|.+.+.+......++..+ ++...-...|..+ . ..+ ..+...
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~~~i--~y~~~k~PwPvs~--R------D~V~~r~~~~ 119 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDGETV--IYWEVKYPFPLSN--R------DYVYIRQRRD 119 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCCCEE--EEEEEEcCCCCCC--c------eEEEEEEecc
Confidence 4456677723899999999999999999999876632222222112 2221111122221 1 122 112223
Q ss_pred EecCCCeEE---EEEeecc--------cceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHH
Q 030202 96 INAEEMTLT---YSIVDGN--------VGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMAR 162 (181)
Q Consensus 96 ~D~~~~~~~---y~v~~g~--------~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~ 162 (181)
++.++..+. ...++.+ ..+..+.+.+.++|.++ +|.+++....+|. |..|.-+. .+...++..+.+
T Consensus 120 ~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~wlvN~~~~~~~~~~l~ 198 (207)
T cd08910 120 LDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPSWLINWAAKNGVPNFLK 198 (207)
T ss_pred ccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchHHHHHHHHHHhhHHHHH
Confidence 443332211 1122221 23668899999999875 6999999999996 44554443 445666667777
Q ss_pred HHHHHHhh
Q 030202 163 RMKEALQA 170 (181)
Q Consensus 163 ~le~~~~~ 170 (181)
.|..++..
T Consensus 199 ~l~ka~~~ 206 (207)
T cd08910 199 DMQKACQN 206 (207)
T ss_pred HHHHHHhc
Confidence 77776643
No 64
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=95.97 E-value=0.61 Score=36.97 Aligned_cols=142 Identities=12% Similarity=0.029 Sum_probs=74.8
Q ss_pred EEEEEEeCCCHHHHHHHHhc--cCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEE-EEEEE
Q 030202 19 RACEELTGVKAEQIWAFLED--FFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTK-QKLLA 95 (181)
Q Consensus 19 ~v~~~I~~Ap~e~VW~~l~D--f~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~-Erl~~ 95 (181)
+++.+| ++++++|.+++.| .....+|.+.+..+.+++.-+. . ....... .|...- +. ......+. +....
T Consensus 49 k~~~~i-~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~--~-~~i~~~~-~p~~~~-~~-vs~RDfV~~~~~~~ 121 (206)
T cd08867 49 RAEGIV-DALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISE--D-LCVGRTI-TPSAAM-GL-ISPRDFVDLVYVKR 121 (206)
T ss_pred EEEEEE-cCCHHHHHHHHHhcCccccccccccccceEEEEEeCC--C-eEEEEEE-cccccc-Cc-cCCcceEEEEEEEE
Confidence 567778 9999999999988 6677999999999888753221 1 1111110 110000 00 00001221 22233
Q ss_pred EecCCCeEEEEEeeccc--c------eeeEEEEEEEEEcC---CceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHHH
Q 030202 96 INAEEMTLTYSIVDGNV--G------FYGYVSTLTVAPKE---NGCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMARR 163 (181)
Q Consensus 96 ~D~~~~~~~y~v~~g~~--p------~~~~~~t~~v~p~~---~gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~~ 163 (181)
++.....+....++.+. | .....+-+-+.|.+ ++|.++|.+.++|.+ ..|.-+. ..+..++....+.
T Consensus 122 ~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP~~lvn~~~~~~~~~~~~~ 200 (206)
T cd08867 122 YEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIPQSLVESAMPSNLVNFYTD 200 (206)
T ss_pred eCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCcHHHHHhhhhhhHHHHHHH
Confidence 33322223333332221 1 22334445567654 359999999999984 4444443 3455555555555
Q ss_pred HHHHH
Q 030202 164 MKEAL 168 (181)
Q Consensus 164 le~~~ 168 (181)
|++++
T Consensus 201 lr~~~ 205 (206)
T cd08867 201 LVKGV 205 (206)
T ss_pred HHHhc
Confidence 65543
No 65
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.51 E-value=1 Score=36.18 Aligned_cols=141 Identities=9% Similarity=-0.055 Sum_probs=78.6
Q ss_pred eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEE-
Q 030202 18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLL- 94 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~- 94 (181)
-+++.+| +++++++|+++.+-....+|.+.+..+.+++ +.+.-+.-.+.-.. + + +. ......+.-|-.
T Consensus 48 ~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~---~--~--~~-vspRDfV~vr~~~ 118 (204)
T cd08904 48 YRVEGII-PESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSF---A--M--GS-ISPRDFVDLVHIK 118 (204)
T ss_pred EEEEEEe-cCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccc---c--C--Cc-ccCceEEEEEEEE
Confidence 3567888 9999999999988777799999988887765 32222221111110 0 0 00 000012332222
Q ss_pred EEecCCCeEEEEEeeccc--cee------eEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHH
Q 030202 95 AINAEEMTLTYSIVDGNV--GFY------GYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMAR 162 (181)
Q Consensus 95 ~~D~~~~~~~y~v~~g~~--p~~------~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~ 162 (181)
.++.....+.+..++.+. |-+ .+.+=+-+.|.++ +|.++|-+..+|. |..|..+ ..++...+-.+..
T Consensus 119 r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~Dlk-G~lP~~vv~~~~~~~~~~f~~ 197 (204)
T cd08904 119 RYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELR-GNLSRSVIEKTMPTNLVNLIL 197 (204)
T ss_pred EeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCC-CCCCHHHHHHHhHHHHHHHHH
Confidence 234323233344444432 222 3334456778753 5999999999987 5555444 3445666666666
Q ss_pred HHHHHH
Q 030202 163 RMKEAL 168 (181)
Q Consensus 163 ~le~~~ 168 (181)
.|++++
T Consensus 198 ~~~~~~ 203 (204)
T cd08904 198 DAKDGI 203 (204)
T ss_pred HHHHhc
Confidence 666543
No 66
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=94.61 E-value=0.69 Score=37.32 Aligned_cols=100 Identities=13% Similarity=0.239 Sum_probs=63.1
Q ss_pred eCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeE
Q 030202 25 TGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTL 103 (181)
Q Consensus 25 ~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~ 103 (181)
+..+++.++.++++...+.++.|.++++.+..-.++++- +--.+.+ .| .. ....-+++-.++ .+
T Consensus 76 igysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGF--k~-l~---------E~y~S~Vt~~~p---~l 140 (227)
T KOG3177|consen 76 IGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGF--KP-LD---------ERYTSNVTCVKP---HL 140 (227)
T ss_pred hCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecC--cc-cc---------hhheeeeEEecc---cc
Confidence 499999999999999999999999999988653323322 2222222 11 11 133444444333 34
Q ss_pred EEEEe-ecccceeeEEEEEEEEEcCC--c-eEEEEEEEEee
Q 030202 104 TYSIV-DGNVGFYGYVSTLTVAPKEN--G-CYIEWKYEVEP 140 (181)
Q Consensus 104 ~y~v~-~g~~p~~~~~~t~~v~p~~~--g-T~v~W~~~~~p 140 (181)
++.+. ++.+ +......+++.|..+ + |.|.....|+-
T Consensus 141 ~kt~~~d~rL-F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF 180 (227)
T KOG3177|consen 141 TKTVCADGRL-FNHLITIWSFKPGPNIPRTCTLDFSVSFEF 180 (227)
T ss_pred eEEeeccccH-HHhhhheeeeccCCCCCCeEEEEEEEEEEe
Confidence 44444 3433 334566788998773 4 99999988774
No 67
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=94.19 E-value=2.6 Score=34.46 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeeecCCCCCCCCCcCccceEE-EEEE
Q 030202 18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTK-QKLL 94 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~-Erl~ 94 (181)
-++..+|.+++++.+.+++.|.+...+|...+.++.+++ +++..++ +...-...|... . -.+. -.+.
T Consensus 54 ~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~--Y~~~k~PwPvs~--R------D~V~~~~~~ 123 (235)
T cd08872 54 LKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIF--HQTHKRVWPAAQ--R------DALFVSHIR 123 (235)
T ss_pred EEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEE--EEEccCCCCCCC--c------EEEEEEEEE
Confidence 467777823999999999999999999999988887664 2221221 221111123221 1 0222 2223
Q ss_pred EEecCC--------CeEEEEEeeccccee-eEE-EE-----------------EEEEEcCCceEEEEEEEEeeCCCCCHH
Q 030202 95 AINAEE--------MTLTYSIVDGNVGFY-GYV-ST-----------------LTVAPKENGCYIEWKYEVEPVKGWRLE 147 (181)
Q Consensus 95 ~~D~~~--------~~~~y~v~~g~~p~~-~~~-~t-----------------~~v~p~~~gT~v~W~~~~~p~~~~~~~ 147 (181)
..++.. -.+..++.-...|.+ +|. +. +.++|.+++|.|+|....+|.+ ..|.
T Consensus 124 ~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG-~iP~ 202 (235)
T cd08872 124 KIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGG-WAPA 202 (235)
T ss_pred ecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCC-CccH
Confidence 333311 113333332222322 221 11 2344522359999999999974 4444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHh
Q 030202 148 DL-DCFISSGLQVMARRMKEALQ 169 (181)
Q Consensus 148 ~~-~~~~~~gl~~l~~~le~~~~ 169 (181)
-+ +.+++...-.+.++|.++++
T Consensus 203 wvvn~~~k~~~P~~l~~~~~~~~ 225 (235)
T cd08872 203 SVLRAVYKREYPKFLKRFTSYVQ 225 (235)
T ss_pred HHHHHHHHhhchHHHHHHHHHHH
Confidence 44 45577777777777777754
No 68
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=93.44 E-value=2.6 Score=31.96 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=56.8
Q ss_pred CCHHHHHH-HHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeEEE
Q 030202 27 VKAEQIWA-FLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTY 105 (181)
Q Consensus 27 Ap~e~VW~-~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~~y 105 (181)
-..+++|. ++.-..+-..+.|++.+|++++..++ --.|.+.+ .+ ..++|+++... ...+.|
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~--~l~Rel~f-----~~---------~~v~e~vt~~~--~~~v~f 78 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGT--VLERELTF-----GP---------AKIRETVTLEP--PSRVHF 78 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCCC--EEEEEEEE-----CC---------ceEEEEEEecC--CcEEEE
Confidence 46789998 44566666778899999999875432 34688887 11 17899988653 478889
Q ss_pred EEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEe
Q 030202 106 SIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVE 139 (181)
Q Consensus 106 ~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~ 139 (181)
.+..+. -.-++.+....+| =.+++.++..
T Consensus 79 ~~~~~g-----~~l~~~iee~~~g~L~lrf~ye~~ 108 (141)
T cd08863 79 LQADAG-----GTLTNTIEEPEDGALYLRFVYETT 108 (141)
T ss_pred EecCCC-----CeEEEEeccCCCCcEEEEEEEEec
Confidence 866511 1223333332345 4455555554
No 69
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=91.34 E-value=6.6 Score=31.61 Aligned_cols=140 Identities=14% Similarity=0.049 Sum_probs=74.4
Q ss_pred eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceE-EEEeeeecCCCCCCCCCcCccceEE-EEEEE
Q 030202 18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCV-RFCAGFKTPVDNKDDDHEQSVNWTK-QKLLA 95 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsv-R~~~~~~~~~~g~~G~~~~~~~~~~-Erl~~ 95 (181)
=+.+..| +..+++||+.+.+-....+|.|.+..+.+++--+... +| |..+.. + .+ |. ..+...+. -++..
T Consensus 49 ~R~Egvv-~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt-~I~~yvt~~--~-~~--~i-ISpRDFVdv~~~~~ 120 (202)
T cd08902 49 YKAQGVV-EDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENC-CVMRYTTAG--Q-LL--NI-ISPREFVDFSYTTQ 120 (202)
T ss_pred EEEEEEe-cCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCc-EEEEEEccc--C-Cc--Cc-cCccceEEEEEEEE
Confidence 3566777 8999999999998777789999999998876211111 22 333320 0 11 10 00000111 11222
Q ss_pred EecCCCeEEE--EEeecccc---ee--eEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHH
Q 030202 96 INAEEMTLTY--SIVDGNVG---FY--GYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRM 164 (181)
Q Consensus 96 ~D~~~~~~~y--~v~~g~~p---~~--~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~l 164 (181)
+.+ ++ ++= ++.-.+.| ++ ++-.-+-+.|.++ .|.++|-+.+++. |..+..+ ..++-..+-.+...|
T Consensus 121 ~~d-~~-~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLk-G~LPqsiIdq~~~~~~~~F~~~L 197 (202)
T cd08902 121 YED-GL-LSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLR-GMLPQSAVDTAMASTLVNFYSDL 197 (202)
T ss_pred eCC-Ce-EEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCC-CCccHHHHHHHhhHHHHHHHHHH
Confidence 222 22 221 11111111 22 2233455677653 4999999999887 5565555 344555556666666
Q ss_pred HHHH
Q 030202 165 KEAL 168 (181)
Q Consensus 165 e~~~ 168 (181)
.+++
T Consensus 198 rk~~ 201 (202)
T cd08902 198 KKAL 201 (202)
T ss_pred HHhc
Confidence 6553
No 70
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=90.41 E-value=7 Score=30.32 Aligned_cols=145 Identities=15% Similarity=0.159 Sum_probs=79.6
Q ss_pred CCeeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEE
Q 030202 14 PKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKL 93 (181)
Q Consensus 14 ~~w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl 93 (181)
+.+.-++...| +++++++...+.+-.. +|.+.+..+++++--+.. ..+..... ..|. + ++ ......+.-|.
T Consensus 44 ~~~~~k~~~~v-~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~-~~i~~~~~-~~~~-~--~p-~~~RDfv~~~~ 114 (206)
T PF01852_consen 44 PIKMFKAEGVV-PASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDED-TDIVYFVM-KSPW-P--GP-VSPRDFVFLRS 114 (206)
T ss_dssp SCEEEEEEEEE-SSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETT-EEEEEEEE-E-CT-T--TT-SSEEEEEEEEE
T ss_pred cceEEEEEEEE-cCChHHHHHHHHhhHh--hcccchhhheeeeecCCC-CeEEEEEe-cccC-C--CC-CCCcEEEEEEE
Confidence 55667788888 9999988776654433 899999888776521111 33444332 1121 0 10 00011222222
Q ss_pred EEEecC-CCeEEEEEeecc-c--------ceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHH
Q 030202 94 LAINAE-EMTLTYSIVDGN-V--------GFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMA 161 (181)
Q Consensus 94 ~~~D~~-~~~~~y~v~~g~-~--------p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~ 161 (181)
...+.. ...+..+-++.+ . ....+.+-+.++|.+++ |+|++....+|. |..+..+. .++....-.+.
T Consensus 115 ~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~-G~iP~~~~n~~~~~~~~~~~ 193 (206)
T PF01852_consen 115 WRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPK-GWIPSWLVNMVVKSQPPNFL 193 (206)
T ss_dssp EEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESS-SSSHHHHHHHHHHHHHHHHH
T ss_pred EEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCC-CCChHHHHHHHHHHhHHHHH
Confidence 222222 223444333322 1 13366678889999987 999999999997 45554443 33455444444
Q ss_pred HHHHHHH
Q 030202 162 RRMKEAL 168 (181)
Q Consensus 162 ~~le~~~ 168 (181)
+.+.+++
T Consensus 194 ~~~~~~~ 200 (206)
T PF01852_consen 194 KNLRKAL 200 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 71
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=89.29 E-value=10 Score=30.53 Aligned_cols=129 Identities=9% Similarity=0.006 Sum_probs=73.0
Q ss_pred CCCeeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec-CC-CCCCceEEEEeeeecCCCCCCCCCcCccceEE
Q 030202 13 QPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ-GI-SGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTK 90 (181)
Q Consensus 13 ~~~w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~-G~-~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~ 90 (181)
...|++ +++| +++++.|-..+.+ .-++|-..+..+..++ -+ ...++.-+.-. +.|... . ..+.
T Consensus 51 lk~~r~--~~ei-~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~--~~P~~~--R------D~v~ 115 (205)
T cd08909 51 LRLWKV--SVEV-EAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNC--MAPHPS--R------DFVV 115 (205)
T ss_pred eEEEEE--EEEe-CCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeec--CCCCCC--C------EEEE
Confidence 446664 7788 9999999887655 4678999888776654 22 23333222221 112211 1 1444
Q ss_pred EEEEEEecC--CCeEEEEEeecc-cc------eeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHHHHHHHHHH
Q 030202 91 QKLLAINAE--EMTLTYSIVDGN-VG------FYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDLDCFISSGL 157 (181)
Q Consensus 91 Erl~~~D~~--~~~~~y~v~~g~-~p------~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~~~~~~~gl 157 (181)
-|-...|.. ...+.+.-++.+ .| ...+.+-+-++|.++| |+|++...++|. |..+.-+.+.|...+
T Consensus 116 ~R~w~~~~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpk-G~~P~W~~n~~g~~~ 191 (205)
T cd08909 116 LRSWRTDLPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLK-GHSPEWYNKGFGHLC 191 (205)
T ss_pred EEEEEEeCCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCC-CCChHHHHHhHHHHH
Confidence 454444432 222233333332 12 2234566778999875 999999999997 566655555444333
No 72
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=89.05 E-value=7.1 Score=28.48 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=39.8
Q ss_pred eEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEeeC
Q 030202 88 WTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVEPV 141 (181)
Q Consensus 88 ~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~ 141 (181)
..+=+|+++.+ ++.|.++.... ...+..++++.|.++| |.|+++-++++.
T Consensus 53 ~~~v~It~~~~-~~~Y~~~~~s~---~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~ 103 (120)
T PF11687_consen 53 EAKVKITEYEP-NKRYAATFSSS---RGTFTISYEIEPLDDGSIEVTYEEEYESK 103 (120)
T ss_pred EEEEEEEEEcC-CCEEEEEEEec---CCCEEEEEEEEECCCCcEEEEEEEEEccC
Confidence 56667999987 67888876643 2346778999999987 999999999976
No 73
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=85.45 E-value=5.9 Score=27.86 Aligned_cols=81 Identities=12% Similarity=0.042 Sum_probs=54.0
Q ss_pred eEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEeeCC-CCCHHHHHHHHHHHHHHHHHHHH
Q 030202 88 WTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVEPVK-GWRLEDLDCFISSGLQVMARRMK 165 (181)
Q Consensus 88 ~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~-~~~~~~~~~~~~~gl~~l~~~le 165 (181)
.+.-+|..+.+ .+.++|.---.-..+-.-.-++++++..++ |++.-...|.++- ....+ ++.-+...+.++...+.
T Consensus 10 ~~~P~il~~~P-~reL~W~~~~~~~~l~~~~~~~~le~~~~~~t~~~q~e~F~Gvlv~fv~~-lr~~~~~~f~~~n~alr 87 (93)
T COG4891 10 KIRPVILGLEP-LRELTWLGNVRFPGLLDGERYFELEALWGGRTRFAQGESFSGVLVPFVSE-LRRGLTASFENMNPALR 87 (93)
T ss_pred EEeeEEEeccc-chheeeecccccceEEeeEEEEEEeecCCccceeeccceecceeeccchh-hhccchhhhhhhCHHHH
Confidence 45566776766 678999754433345566778999999775 9999999998642 12222 44445666677777777
Q ss_pred HHHhh
Q 030202 166 EALQA 170 (181)
Q Consensus 166 ~~~~~ 170 (181)
+++++
T Consensus 88 ~raE~ 92 (93)
T COG4891 88 ARAEA 92 (93)
T ss_pred hhhhc
Confidence 76653
No 74
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=65.37 E-value=1.3e+02 Score=28.83 Aligned_cols=115 Identities=7% Similarity=0.017 Sum_probs=60.7
Q ss_pred EEEEEeCCCHHHHHHHHhccCCc-ccccccceeEEEecCCCCCCceE-EEEeeeecCCCCCCCCCcCccceEEEEE-EEE
Q 030202 20 ACEELTGVKAEQIWAFLEDFFGL-DKWFPTLTTCIPIQGISGQPGCV-RFCAGFKTPVDNKDDDHEQSVNWTKQKL-LAI 96 (181)
Q Consensus 20 v~~~I~~Ap~e~VW~~l~Df~~~-~~w~P~v~~~~~~~G~~~~vGsv-R~~~~~~~~~~g~~G~~~~~~~~~~Erl-~~~ 96 (181)
+.-.| +|++++||+.|.+.+.. .+|-..+..+.+++--++..--+ +.++-...| +- ....-.+--|- ...
T Consensus 231 avGVV-~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~-----~~-ispRDFV~~Rywrr~ 303 (719)
T PLN00188 231 AVGVV-EATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFP-----MF-VWPRDLCYVRYWRRN 303 (719)
T ss_pred EEEEe-cCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEecccccc-----Cc-cCcceeEEEEEEEEc
Confidence 34567 99999999999877644 78999888887765222111111 222200000 00 00000222222 233
Q ss_pred ecCCCeEEEEEeeccc--cee------eEEEEEEEEEcC-----CceEEEEEEEEeeC
Q 030202 97 NAEEMTLTYSIVDGNV--GFY------GYVSTLTVAPKE-----NGCYIEWKYEVEPV 141 (181)
Q Consensus 97 D~~~~~~~y~v~~g~~--p~~------~~~~t~~v~p~~-----~gT~v~W~~~~~p~ 141 (181)
++..+.+.|.-++.+- |.+ ...+-+.+.|.. .+|.|+|-+..++.
T Consensus 304 eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 304 DDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLK 361 (719)
T ss_pred CCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccC
Confidence 3333444555455432 222 223556677742 35999999999976
No 75
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.00 E-value=44 Score=28.52 Aligned_cols=97 Identities=11% Similarity=0.204 Sum_probs=60.2
Q ss_pred EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202 20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE 99 (181)
Q Consensus 20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~ 99 (181)
.+.++ +|+++++++++.|-..+..|.-+. .. ++.+.+ |..-.+. | -+.-+++++.++
T Consensus 177 l~~tf-n~~~~eLy~~fld~~rv~~wt~S~--a~-l~~~~~--g~f~lf~----------G-------nVtg~~~~~e~~ 233 (301)
T KOG2936|consen 177 LSATF-NCRVDELYEIFLDPERVKAWTRSP--AE-LEADPG--GKFSLFD----------G-------NVTGEFLELEKN 233 (301)
T ss_pred ehhhc-CCCHHHHHHHHhcHHHHHHhcCCh--hh-cccCCC--CceEEec----------c-------cceeeeeeecCC
Confidence 45678 999999999999988887776522 22 233222 3333332 3 244456666665
Q ss_pred CC-eEEEEEeecccceeeEEEEEEEEEcCC--ceEEEEEEEEeeCC
Q 030202 100 EM-TLTYSIVDGNVGFYGYVSTLTVAPKEN--GCYIEWKYEVEPVK 142 (181)
Q Consensus 100 ~~-~~~y~v~~g~~p~~~~~~t~~v~p~~~--gT~v~W~~~~~p~~ 142 (181)
+. .+.|++-+=| .++.+|+.++.... .|.+.....=-|+.
T Consensus 234 K~Iv~kWrl~~Wp---~~~~atI~~~f~~~~~~t~l~~~~kgVP~~ 276 (301)
T KOG2936|consen 234 KKIVMKWRLKSWP---DGHDATITLTFYESQGETKLQVKQKGVPIG 276 (301)
T ss_pred CeEEEEEecccCC---CCccceEEEEEecCCCceEEEEEecCCCcc
Confidence 44 4678865432 33567788877653 38887776666664
No 76
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=47.27 E-value=1.6e+02 Score=24.08 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc--eEEEEeeeecCCCCCCCCCcCccceEEE-EEE
Q 030202 18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG--CVRFCAGFKTPVDNKDDDHEQSVNWTKQ-KLL 94 (181)
Q Consensus 18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG--svR~~~~~~~~~~g~~G~~~~~~~~~~E-rl~ 94 (181)
=++..++-|++|+.|.+++-|-+=-++|--.+...+.++-++ .+| -+|...-+..|... . ..+-- |+.
T Consensus 55 Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~-~tg~~vv~w~~kfP~p~~~--R------dYV~~Rr~~ 125 (219)
T KOG2761|consen 55 YKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDP-VTGTEVVYWVKKFPFPMSN--R------DYVYVRRWW 125 (219)
T ss_pred EEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecC-CCCceEEEEEEeCCcccCC--c------cEEEEEEEE
Confidence 345566679999999999988665578998887776654332 123 23333221112221 1 12332 333
Q ss_pred EEecCCCe--EEEEEeecccc-------eeeEEEEEEEE-----EcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHH
Q 030202 95 AINAEEMT--LTYSIVDGNVG-------FYGYVSTLTVA-----PKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVM 160 (181)
Q Consensus 95 ~~D~~~~~--~~y~v~~g~~p-------~~~~~~t~~v~-----p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l 160 (181)
.-|+ +.. +++.+....+| +..|..-+.+. +.++||.+...+--.|..+.......-..+.|.=+.
T Consensus 126 ~~~~-k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~ 204 (219)
T KOG2761|consen 126 ESDE-KDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHNPGGGIPKWVVKLAVRKGMPGA 204 (219)
T ss_pred ecCC-ceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEECCCCCCcHHHHHHHHHhcChHH
Confidence 3332 222 22332222222 33455445444 223479999998888876555544444466666566
Q ss_pred HHHHHHHHhhh
Q 030202 161 ARRMKEALQAY 171 (181)
Q Consensus 161 ~~~le~~~~~~ 171 (181)
.++|+.+++++
T Consensus 205 vkKm~~a~~~Y 215 (219)
T KOG2761|consen 205 VKKMEKALLAY 215 (219)
T ss_pred HHHHHHHHHhh
Confidence 66666665554
No 77
>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised.
Probab=33.49 E-value=2.1e+02 Score=21.55 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=17.6
Q ss_pred eEEEEEEEEEcCCceEEEEEEEEe
Q 030202 116 GYVSTLTVAPKENGCYIEWKYEVE 139 (181)
Q Consensus 116 ~~~~t~~v~p~~~gT~v~W~~~~~ 139 (181)
.+.+.+.+.+.++.|.|.|..+..
T Consensus 85 ~~~~~l~~~~~~~~t~l~~~~~l~ 108 (158)
T PF09366_consen 85 DLQASLYPEEPPGRTRLEGDADLS 108 (158)
T ss_pred EEEEEEEEecCCCceEEEEEEEEE
Confidence 567777776655679999987765
No 78
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=28.86 E-value=2.9e+02 Score=21.73 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.2
Q ss_pred eEEEEEEEEecCCCeEEEEEeeccc
Q 030202 88 WTKQKLLAINAEEMTLTYSIVDGNV 112 (181)
Q Consensus 88 ~~~Erl~~~D~~~~~~~y~v~~g~~ 112 (181)
.++|-+..+++.+....|.+-++.+
T Consensus 49 kvKE~~~~ynp~~~~~~Y~is~~~l 73 (178)
T PF02087_consen 49 KVKEALYHYNPKNKTYFYDISESKL 73 (178)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred ceEEEEEEecCCCceEEEEeeeeec
Confidence 7999999999999999999887654
No 79
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=24.58 E-value=1e+02 Score=17.68 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=16.2
Q ss_pred eeeEEEEEEeCCCHHHHHHHHh
Q 030202 16 WQGRACEELTGVKAEQIWAFLE 37 (181)
Q Consensus 16 w~~~v~~~I~~Ap~e~VW~~l~ 37 (181)
.+|+|.+-= ++|++|+.+++.
T Consensus 12 Y~G~V~Vfd-~v~~~Ka~~im~ 32 (36)
T PF06200_consen 12 YGGQVCVFD-DVPPDKAQEIML 32 (36)
T ss_pred ECCEEEEeC-CCCHHHHHHHHH
Confidence 467777754 699999999875
No 80
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=22.24 E-value=4.2e+02 Score=21.35 Aligned_cols=125 Identities=10% Similarity=0.053 Sum_probs=64.2
Q ss_pred CCeeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeeecCCCCCCCCCcCccceEEE
Q 030202 14 PKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQ 91 (181)
Q Consensus 14 ~~w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~E 91 (181)
..|+ ++++|.+.|++-+.++|.| -..|-+.+..+..++ .++..+|- -.+.. +.|... ..++.-
T Consensus 52 ~lwk--~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~dI~y-Y~~~~-~~p~p~--------RDfv~l 116 (205)
T cd08907 52 RLWK--VSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIEALENNTEVYH-YVTDS-MAPHPR--------RDFVVL 116 (205)
T ss_pred EEEE--EEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhheeecCCCEEEE-EEecC-CCCCCC--------ceEEEE
Confidence 4555 4555657777777889988 346888776654433 34445552 12211 111111 113333
Q ss_pred EEEEEecC--CCe-EEEEEeeccc-ce-----eeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHH
Q 030202 92 KLLAINAE--EMT-LTYSIVDGNV-GF-----YGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFIS 154 (181)
Q Consensus 92 rl~~~D~~--~~~-~~y~v~~g~~-p~-----~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~ 154 (181)
|--.-|.. .+. +.++|.-... |. ..+..-+-++|.|. +|+|++-...+|. |-.++-..+.+.
T Consensus 117 RsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~r-G~~P~Wynk~~g 188 (205)
T cd08907 117 RMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRLTHICRADLR-GRSPDWYNKVFG 188 (205)
T ss_pred EEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEEEEEEEeCCC-CCCcHHHHHhHH
Confidence 33111111 111 2344432112 22 13444556788876 5999999999987 455544444444
Done!