Query 030204
Match_columns 181
No_of_seqs 103 out of 1089
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02945 nicotinamide-nucleoti 100.0 4.4E-42 9.6E-47 275.5 17.6 176 1-176 61-236 (236)
2 TIGR00482 nicotinate (nicotina 100.0 4.1E-42 8.8E-47 268.2 15.8 161 1-175 31-193 (193)
3 PRK06973 nicotinic acid mononu 100.0 1E-41 2.2E-46 273.7 15.5 164 1-177 56-243 (243)
4 cd09286 NMNAT_Eukarya Nicotina 100.0 3.8E-41 8.2E-46 268.1 16.6 175 1-175 40-225 (225)
5 PRK00071 nadD nicotinic acid m 100.0 2.4E-40 5.3E-45 260.0 15.4 162 1-176 38-202 (203)
6 COG1057 NadD Nicotinic acid mo 100.0 6.1E-40 1.3E-44 255.4 13.7 156 1-176 37-196 (197)
7 cd02165 NMNAT Nicotinamide/nic 100.0 1.1E-37 2.3E-42 243.0 15.0 159 1-175 33-192 (192)
8 PRK08887 nicotinic acid mononu 100.0 8.8E-37 1.9E-41 234.4 12.0 136 1-178 33-173 (174)
9 PRK07152 nadD putative nicotin 100.0 2.9E-36 6.2E-41 253.7 13.9 150 1-177 35-186 (342)
10 KOG3199 Nicotinamide mononucle 100.0 2.4E-32 5.1E-37 209.6 13.7 179 1-179 48-234 (234)
11 TIGR01510 coaD_prev_kdtB pante 99.9 5.7E-23 1.2E-27 155.1 8.4 124 1-172 31-154 (155)
12 cd02163 PPAT Phosphopantethein 99.9 2.5E-22 5.5E-27 151.3 7.9 123 1-171 31-153 (153)
13 PRK00168 coaD phosphopantethei 99.8 1.4E-20 3.1E-25 142.6 9.0 123 2-172 34-156 (159)
14 PF01467 CTP_transf_2: Cytidyl 99.8 2.6E-19 5.6E-24 133.1 2.9 124 2-150 32-157 (157)
15 COG0669 CoaD Phosphopantethein 99.2 3.6E-11 7.8E-16 89.4 6.4 122 4-172 36-157 (159)
16 TIGR01527 arch_NMN_Atrans nico 99.1 1.4E-09 3E-14 82.9 10.4 121 2-173 33-155 (165)
17 cd02168 NMNAT_Nudix Nicotinami 99.0 1.1E-09 2.4E-14 84.6 8.6 33 141-173 132-166 (181)
18 cd02039 cytidylyltransferase_l 99.0 1.2E-09 2.6E-14 80.0 6.6 107 2-149 33-142 (143)
19 cd02166 NMNAT_Archaea Nicotina 99.0 7.2E-09 1.6E-13 78.8 11.0 35 140-174 124-158 (163)
20 TIGR00339 sopT ATP sulphurylas 99.0 7.7E-09 1.7E-13 88.4 12.2 144 1-170 217-382 (383)
21 PRK01153 nicotinamide-nucleoti 98.8 6E-08 1.3E-12 74.5 11.1 34 140-173 125-158 (174)
22 smart00764 Citrate_ly_lig Citr 98.7 8.1E-08 1.7E-12 74.3 9.3 30 140-169 151-182 (182)
23 cd02169 Citrate_lyase_ligase C 98.6 9.2E-08 2E-12 79.3 6.5 134 10-169 152-297 (297)
24 PRK05379 bifunctional nicotina 98.5 3.5E-07 7.5E-12 77.3 8.4 121 5-172 44-171 (340)
25 PRK13964 coaD phosphopantethei 98.5 2.5E-07 5.5E-12 68.6 5.4 106 2-154 34-139 (140)
26 cd02167 NMNAT_NadR Nicotinamid 98.1 2.1E-05 4.6E-10 59.5 8.1 41 1-41 31-73 (158)
27 PRK13793 nicotinamide-nucleoti 98.1 2.5E-05 5.4E-10 61.0 8.5 33 140-172 134-166 (196)
28 cd02170 cytidylyltransferase c 98.0 2.8E-05 6.1E-10 57.0 7.0 87 12-152 48-134 (136)
29 TIGR00124 cit_ly_ligase [citra 97.7 0.00012 2.6E-09 61.8 6.4 34 140-173 295-330 (332)
30 PF08218 Citrate_ly_lig: Citra 97.2 0.00033 7.2E-09 53.6 3.5 31 139-169 150-182 (182)
31 cd02064 FAD_synthetase_N FAD s 96.9 0.0067 1.4E-07 46.6 8.3 104 12-155 54-159 (180)
32 COG3053 CitC Citrate lyase syn 96.8 0.005 1.1E-07 50.8 7.2 33 140-172 302-336 (352)
33 PRK08099 bifunctional DNA-bind 96.6 0.013 2.9E-07 50.7 8.5 30 11-40 103-132 (399)
34 PRK00777 phosphopantetheine ad 96.5 0.0047 1E-07 46.5 4.4 22 8-29 43-65 (153)
35 cd02171 G3P_Cytidylyltransfera 95.8 0.053 1.1E-06 39.1 7.3 16 11-26 47-62 (129)
36 TIGR01526 nadR_NMN_Atrans nico 95.7 0.01 2.2E-07 49.9 3.6 39 1-39 33-74 (325)
37 PF01747 ATP-sulfurylase: ATP- 95.3 0.28 6.1E-06 39.0 10.0 32 140-171 181-213 (215)
38 PRK07143 hypothetical protein; 94.9 0.21 4.5E-06 41.3 8.7 16 140-155 148-163 (279)
39 TIGR00083 ribF riboflavin kina 93.8 0.69 1.5E-05 38.4 9.4 102 13-155 53-157 (288)
40 cd00517 ATPS ATP-sulfurylase. 93.7 1.6 3.4E-05 37.3 11.6 137 9-171 197-352 (353)
41 PRK05627 bifunctional riboflav 93.0 0.81 1.8E-05 38.2 8.7 57 12-81 68-125 (305)
42 PRK04149 sat sulfate adenylylt 91.7 5.5 0.00012 34.5 12.4 34 139-172 346-380 (391)
43 cd02174 CCT CTP:phosphocholine 91.4 2.6 5.6E-05 31.5 9.0 50 12-82 51-100 (150)
44 PRK05537 bifunctional sulfate 87.2 14 0.0003 33.7 12.0 139 9-172 226-384 (568)
45 TIGR00125 cyt_tran_rel cytidyl 85.6 0.9 1.9E-05 28.3 2.6 26 5-30 38-64 (66)
46 KOG0564 5,10-methylenetetrahyd 77.9 2.9 6.2E-05 37.2 3.7 34 28-61 113-146 (590)
47 PRK13670 hypothetical protein; 77.2 2.8 6E-05 36.3 3.5 32 140-171 199-232 (388)
48 PRK15364 pathogenicity island 71.8 4.7 0.0001 31.1 3.1 20 155-174 93-112 (196)
49 PRK13671 hypothetical protein; 71.1 3.4 7.5E-05 34.5 2.4 30 141-170 195-224 (298)
50 PRK13660 hypothetical protein; 69.0 52 0.0011 25.5 11.9 136 19-171 32-177 (182)
51 cd02173 ECT CTP:phosphoethanol 67.2 16 0.00035 27.2 5.2 50 12-82 51-100 (152)
52 cd02164 PPAT_CoAS phosphopante 66.0 9.6 0.00021 28.2 3.7 18 13-30 49-66 (143)
53 TIGR02199 rfaE_dom_II rfaE bif 64.9 10 0.00022 27.9 3.7 24 127-152 120-143 (144)
54 PRK13671 hypothetical protein; 62.8 6.7 0.00015 32.8 2.6 26 1-26 34-61 (298)
55 COG2046 MET3 ATP sulfurylase ( 59.4 11 0.00024 32.5 3.3 34 139-172 342-376 (397)
56 COG1056 NadR Nicotinamide mono 58.7 12 0.00026 28.7 3.2 33 139-171 126-159 (172)
57 COG0196 RibF FAD synthase [Coe 56.7 6.9 0.00015 32.8 1.7 16 140-155 159-174 (304)
58 KOG1946 RNA polymerase I trans 52.6 9.4 0.0002 30.9 1.8 41 139-180 103-143 (240)
59 TIGR01518 g3p_cytidyltrns glyc 50.8 6.8 0.00015 27.9 0.6 12 140-151 114-125 (125)
60 PF02201 SWIB: SWIB/MDM2 domai 50.6 7.7 0.00017 25.3 0.8 17 163-179 27-43 (76)
61 PF03433 EspA: EspA-like secre 49.6 5.5 0.00012 30.9 0.0 17 158-174 96-112 (188)
62 PLN02388 phosphopantetheine ad 43.8 14 0.0003 28.5 1.4 15 139-153 152-166 (177)
63 PF06908 DUF1273: Protein of u 42.7 65 0.0014 24.7 5.0 111 45-169 55-175 (177)
64 PLN02406 ethanolamine-phosphat 41.5 89 0.0019 27.5 6.2 53 9-79 96-150 (418)
65 PF05636 HIGH_NTase1: HIGH Nuc 40.4 9.3 0.0002 33.1 0.0 30 140-169 200-231 (388)
66 PF07875 Coat_F: Coat F domain 39.8 12 0.00025 23.5 0.4 39 140-178 25-63 (64)
67 CHL00132 psaF photosystem I su 39.2 36 0.00078 26.3 3.0 23 71-93 82-104 (185)
68 KOG0037 Ca2+-binding protein, 39.1 24 0.00052 28.1 2.1 31 139-172 138-168 (221)
69 smart00151 SWIB SWI complex, B 38.9 27 0.00058 22.8 2.0 18 161-178 25-42 (77)
70 PTZ00308 ethanolamine-phosphat 35.0 91 0.002 26.7 5.2 49 12-81 241-289 (353)
71 COG1323 Predicted nucleotidylt 34.9 22 0.00049 30.5 1.4 33 140-172 203-237 (358)
72 PF08483 IstB_IS21_ATP: IstB-l 32.3 37 0.00081 18.2 1.6 13 12-24 10-22 (30)
73 COG1019 Predicted nucleotidylt 32.0 68 0.0015 24.2 3.4 51 101-151 92-146 (158)
74 PRK06015 keto-hydroxyglutarate 31.3 1.8E+02 0.0039 22.8 5.9 121 14-171 13-137 (201)
75 PF10828 DUF2570: Protein of u 30.3 66 0.0014 22.5 3.1 31 141-171 77-107 (110)
76 PLN00019 photosystem I reactio 27.6 44 0.00096 26.5 1.9 23 71-93 122-144 (223)
77 COG1167 ARO8 Transcriptional r 25.9 77 0.0017 27.9 3.3 28 1-29 232-259 (459)
78 TIGR03765 ICE_PFL_4695 integra 25.6 45 0.00098 23.4 1.5 34 72-110 26-61 (105)
79 PF03040 CemA: CemA family; I 25.3 6.2 0.00013 31.7 -3.3 21 70-90 151-171 (230)
80 TIGR01182 eda Entner-Doudoroff 24.4 2.5E+02 0.0054 22.0 5.6 121 14-171 17-141 (204)
81 PRK05718 keto-hydroxyglutarate 23.7 2E+02 0.0043 22.7 5.0 54 14-85 24-78 (212)
82 PF02826 2-Hacid_dh_C: D-isome 23.7 3.2E+02 0.0068 20.4 6.4 62 94-155 84-145 (178)
83 COG0615 TagD Cytidylyltransfer 23.5 1.5E+02 0.0032 22.0 3.9 15 11-25 48-62 (140)
84 PF11072 DUF2859: Protein of u 22.6 53 0.0012 24.4 1.4 35 71-110 63-99 (142)
85 CHL00043 cemA envelope membran 22.3 5.8 0.00013 32.4 -4.0 21 70-90 182-202 (261)
86 cd02156 nt_trans nucleotidyl t 21.8 59 0.0013 22.1 1.5 25 2-26 32-58 (105)
87 COG3443 Predicted periplasmic 21.7 68 0.0015 24.6 1.8 34 59-92 141-178 (193)
88 PRK02507 proton extrusion prot 20.4 7.3 0.00016 34.1 -4.0 21 70-90 343-363 (422)
No 1
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=100.00 E-value=4.4e-42 Score=275.46 Aligned_cols=176 Identities=71% Similarity=1.218 Sum_probs=146.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
|+|++++|+|+..+++++|++||++|+++++++.|+++|+++++++||++||+++++.||..++-+....+++||||+|+
T Consensus 61 ~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 140 (236)
T PLN02945 61 MSPVNDAYKKKGLASAEHRIQMCQLACEDSDFIMVDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDL 140 (236)
T ss_pred ECCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhH
Confidence 57999999998899999999999999999999999999999999999999999999998621111111258999999999
Q ss_pred hhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCcc
Q 030204 81 LESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYL 160 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~l 160 (181)
+.+|++|+.|++++.++|++.|+|+|+.|+|+.......+...+.....++++++.....+||||+||++++.|+++.++
T Consensus 141 l~~l~~~~~W~~~~~~~l~~~~~~vV~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~i~~l 220 (236)
T PLN02945 141 LESFSTPGVWIPDQVRTICRDYGVVCIRREGQDVEKLVSQDEILNENRGNILVVDDLVPNSISSTRVRECISRGLSVKYL 220 (236)
T ss_pred HHhcCCCCcCCHHHHHHHHHhCCEEEEeCCCCCHHHHhhcchhhhhCcCCEEEecccccccccHHHHHHHHHcCCCchhh
Confidence 99999998899875567999999999999998764322111223333456777754445899999999999999999999
Q ss_pred ChHHHHHHHHhCCCCC
Q 030204 161 TEDKVIDYIRESRLYL 176 (181)
Q Consensus 161 vp~~V~~yI~~~~LY~ 176 (181)
||++|.+||++|+||.
T Consensus 221 vP~~V~~YI~~~~LY~ 236 (236)
T PLN02945 221 TPDGVIDYIKEHGLYM 236 (236)
T ss_pred CCHHHHHHHHHcCCCC
Confidence 9999999999999994
No 2
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=100.00 E-value=4.1e-42 Score=268.19 Aligned_cols=161 Identities=29% Similarity=0.471 Sum_probs=139.0
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEec
Q 030204 1 MSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGS 78 (181)
Q Consensus 1 ~~P~~~~~~K~--~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~ 78 (181)
|+|++.+|+|+ ..+++++|++||++|+++++++.|+++|+++++++||++||++|+++||+ .+++||||+
T Consensus 31 ~~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~p~--------~~~~~iiG~ 102 (193)
T TIGR00482 31 FVPTANPPHKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPSYTIDTLKHLKKKYPD--------VELYFIIGA 102 (193)
T ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCCCHHHHHHHHHHHCCC--------CeEEEEEcH
Confidence 58999999997 46899999999999999999999999999999999999999999999997 589999999
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCC
Q 030204 79 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIK 158 (181)
Q Consensus 79 D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~ 158 (181)
|++.+|++|+.| ++|++.++|+|++|+|+...............+.++++++ .+..+||||+||++++.|++++
T Consensus 103 D~l~~l~~W~~~-----~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~iSST~IR~~l~~g~~~~ 176 (193)
T TIGR00482 103 DALRSFPLWKDW-----QELLELVHLVIVPRPGYTLDKALLEKAILRMHHGNLTLLH-NPRVPISSTEIRQRIRQGKSIE 176 (193)
T ss_pred HHhhhhccccCH-----HHHHHhCcEEEEeCCCCCcchhhhHHHHhcccCCcEEEEc-CCccccCHHHHHHHHHcCCCch
Confidence 999999966655 9999999999999999864321100000001235678876 5568999999999999999999
Q ss_pred ccChHHHHHHHHhCCCC
Q 030204 159 YLTEDKVIDYIRESRLY 175 (181)
Q Consensus 159 ~lvp~~V~~yI~~~~LY 175 (181)
++||++|.+||.+|+||
T Consensus 177 ~lvP~~V~~YI~~~~LY 193 (193)
T TIGR00482 177 YLLPDPVIKYIKQHGLY 193 (193)
T ss_pred hhCCHHHHHHHHHhCCC
Confidence 99999999999999999
No 3
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=1e-41 Score=273.68 Aligned_cols=164 Identities=22% Similarity=0.285 Sum_probs=137.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCC----CceeechhhhcCCCccchHHHHHHHHHHh-cccccccCCCceEEEE
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSS----DFIMVDPWEANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLV 75 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~----~~~~v~~~E~~~~~~syT~~tl~~l~~~~-~~~~~~~~~~~~~~fi 75 (181)
|||++.+|+|+..+++++|++||++|+++. ++|.|+++|+++++++||++||++|+++| |+ .+++||
T Consensus 56 ~iP~~~pp~K~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~Ei~~~g~syTidTL~~l~~~~~p~--------~~~~fi 127 (243)
T PRK06973 56 LIPAGQPWQKADVSAAEHRLAMTRAAAASLVLPGVTVRVATDEIEHAGPTYTVDTLARWRERIGPD--------ASLALL 127 (243)
T ss_pred EEECCcCCCCCCCCCHHHHHHHHHHHHHhccCCCceEEEeHhhhhCCCCCcHHHHHHHHHHHcCCC--------CCEEEE
Confidence 589999999977899999999999999963 48999999999999999999999999999 66 589999
Q ss_pred EechhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhh-----------chHHHhhcCCcEEEEcCCCCCcccH
Q 030204 76 CGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIIS-----------DNEILDKNKGNIKLVDELVPNQISS 144 (181)
Q Consensus 76 iG~D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ISS 144 (181)
||+|++.+|++|+.| ++|+++|+|+|+.|+|++...... +...+.+.....+++...+..+|||
T Consensus 128 iG~D~l~~l~~W~~~-----~~L~~~~~lvV~~R~g~~~~~~~~~~~~~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ISS 202 (243)
T PRK06973 128 IGADQLVRLDTWRDW-----RRLFDYAHLCAATRPGFDLGAASPAVAAEIAARQADADVLQATPAGHLLIDTTLAFDLSA 202 (243)
T ss_pred EchhhHhhcCCcccH-----HHHHHhCCEEEEECCCCCcccchhHHHHHHhhhhhhhhhhhcCCCceEEEcCCCcccccH
Confidence 999999999977777 999999999999999976431100 0111111122344554455689999
Q ss_pred HHHHHHHHcC--------CCCCccChHHHHHHHHhCCCCCC
Q 030204 145 TRIRDCICRG--------LSIKYLTEDKVIDYIRESRLYLN 177 (181)
Q Consensus 145 T~IR~~l~~g--------~~~~~lvp~~V~~yI~~~~LY~~ 177 (181)
|+||++++.| +++.++||++|++||++|+||.+
T Consensus 203 T~IR~~l~~g~~~~~~~~~~i~~lvP~~V~~YI~~~~LY~~ 243 (243)
T PRK06973 203 TDIRAHLRACIARRAQVPDASAEHVPAAVWAYILQHRLYHR 243 (243)
T ss_pred HHHHHHHHcCCCcccccCCChhHhCCHHHHHHHHHcCCCCC
Confidence 9999999999 99999999999999999999963
No 4
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=100.00 E-value=3.8e-41 Score=268.13 Aligned_cols=175 Identities=47% Similarity=0.847 Sum_probs=144.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhccc-----c---cc---cCCC
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEA-----G---LI---STES 69 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~-----~---~~---~~~~ 69 (181)
++|++++|+|..++++++|++|+++|+++++++.|+++|+.+++++||++||+++++.||++ | .+ +...
T Consensus 40 ~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~~~~~~syT~~TL~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 119 (225)
T cd09286 40 ISPVNDAYGKKGLASAKHRVAMCRLAVQSSDWIRVDDWESLQPEWMRTAKVLRHHREEINNKYGGIEGAAKRVLDGSRRE 119 (225)
T ss_pred EEeeccCCCCCCCCCHHHHHHHHHHHHccCCCEEEEehhccCCccccHHHHHHHHHHHhcccccccccccccccccccCC
Confidence 36999999998899999999999999999999999999999999999999999999999820 0 00 0001
Q ss_pred ceEEEEEechhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHH
Q 030204 70 LKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRD 149 (181)
Q Consensus 70 ~~~~fiiG~D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~ 149 (181)
.+++||||+|++.+|++|+.|++...++|++.++|+|+.|+|+...........+.++.+++.+++.....+||||+||+
T Consensus 120 ~~~~fiiG~D~l~~l~~~~~W~~~~~e~ll~~~~~vv~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~ 199 (225)
T cd09286 120 VKIMLLCGADLLESFGIPGLWKDADLEEILGEFGLVVVERTGSDPENFIASSDILRKYQDNIHLVKDWIPNDISSTKVRR 199 (225)
T ss_pred ceEEEEecHhHHHhcCCCCcCCHHHHHHHHHhCCEEEEeCCCCCHHHhhhccchhHHhhCCEEEEecCcccccChHHHHH
Confidence 58999999999999999888985335999999999999999987543221111233445678877533456999999999
Q ss_pred HHHcCCCCCccChHHHHHHHHhCCCC
Q 030204 150 CICRGLSIKYLTEDKVIDYIRESRLY 175 (181)
Q Consensus 150 ~l~~g~~~~~lvp~~V~~yI~~~~LY 175 (181)
++++|++++++||++|.+||++|+||
T Consensus 200 ~l~~g~~~~~llp~~V~~YI~~~~LY 225 (225)
T cd09286 200 ALRRGMSVKYLLPDPVIEYIEQHQLY 225 (225)
T ss_pred HHHcCCCchhcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999
No 5
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=2.4e-40 Score=260.00 Aligned_cols=162 Identities=27% Similarity=0.367 Sum_probs=140.1
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEec
Q 030204 1 MSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGS 78 (181)
Q Consensus 1 ~~P~~~~~~K~--~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~ 78 (181)
|+|+..+|+|+ ..+++++|++|+++|+++.+++.|+++|+++++++||++||+++++.||+ .+++||||+
T Consensus 38 ~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~p~--------~~~~fiiG~ 109 (203)
T PRK00071 38 FLPNPGPPHKPQKPLAPLEHRLAMLELAIADNPRFSVSDIELERPGPSYTIDTLRELRARYPD--------VELVFIIGA 109 (203)
T ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHHhCCCCCCHHHHHHHHHHHCCC--------CcEEEEEcH
Confidence 57888888886 58999999999999999999999999999999999999999999999998 589999999
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhh-chHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCC
Q 030204 79 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIIS-DNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSI 157 (181)
Q Consensus 79 D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~ 157 (181)
|++.+|++|+.| ++|++.++|+|++|+|+....... ....+....+++.+++ .+..+||||+||++++.|+++
T Consensus 110 D~l~~l~~W~~~-----~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~ISST~IR~~l~~g~~~ 183 (203)
T PRK00071 110 DALAQLPRWKRW-----EEILDLVHFVVVPRPGYPLEALALPALQQLLEAAGAITLLD-VPLLAISSTAIRERIKEGRPI 183 (203)
T ss_pred HHhhhcccccCH-----HHHHHhCcEEEEeCCCCCccccchhHHHHhhccCCCEEEEe-CCCCccCHHHHHHHHHcCCCh
Confidence 999999966555 999999999999999976432110 0011111256788886 667999999999999999999
Q ss_pred CccChHHHHHHHHhCCCCC
Q 030204 158 KYLTEDKVIDYIRESRLYL 176 (181)
Q Consensus 158 ~~lvp~~V~~yI~~~~LY~ 176 (181)
.++||++|.+||++|+||.
T Consensus 184 ~~lvp~~V~~YI~~~~LY~ 202 (203)
T PRK00071 184 RYLLPEAVLDYIEKHGLYR 202 (203)
T ss_pred hHhCCHHHHHHHHHhCccC
Confidence 9999999999999999996
No 6
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=6.1e-40 Score=255.37 Aligned_cols=156 Identities=31% Similarity=0.411 Sum_probs=136.3
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHH-hcccccccCCCceEEEEEe
Q 030204 1 MSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNF-LIEAGLISTESLKVMLVCG 77 (181)
Q Consensus 1 ~~P~~~~~~K~--~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~-~~~~~~~~~~~~~~~fiiG 77 (181)
++|++.+|+|+ +++|.++|++|+++|+++.+.+.|+++|+.+.++|||+|||++++++ +|+ .+||||||
T Consensus 37 ~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~~r~g~sYT~dTl~~~~~~~~p~--------~~~~fIiG 108 (197)
T COG1057 37 FLPSPVPPHKKKKELASAEHRLAMLELAIEDNPRFEVSDREIKRGGPSYTIDTLEHLRQEYGPD--------VELYFIIG 108 (197)
T ss_pred EecCCCCCCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHHHcCCCcchHHHHHHHHHHhCCC--------CcEEEEEe
Confidence 58999999998 49999999999999999999999999999999999999999999954 555 58999999
Q ss_pred chhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCC-hhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCC
Q 030204 78 SDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQD-VEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLS 156 (181)
Q Consensus 78 ~D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~ 156 (181)
+|++.+|++|+.| ++|++.|+|+|++|+|+. .... .. ...+.+.+++ .+..+||||.||++++.|+.
T Consensus 109 aD~l~~l~~W~~~-----~ell~~~~~vv~~Rp~~~~~~~~-----~~-~~~~~~~~~~-~~~~~ISSt~IR~~~~~~~~ 176 (197)
T COG1057 109 ADNLASLPKWYDW-----DELLKLVTFVVAPRPGYGELELS-----LL-SSGGAIILLD-LPRLDISSTEIRERIRRGAS 176 (197)
T ss_pred hHHhhhhhhhhhH-----HHHHHhCCEEEEecCCchhhhhh-----hh-cCCceEEEcc-CccccCchHHHHHHHhCCCC
Confidence 9999999977777 999999999999999985 2110 11 1123455554 77889999999999999999
Q ss_pred CCccChHHHHHHHHhCCCCC
Q 030204 157 IKYLTEDKVIDYIRESRLYL 176 (181)
Q Consensus 157 ~~~lvp~~V~~yI~~~~LY~ 176 (181)
+.+++|++|.+||.+|+||.
T Consensus 177 ~~~llP~~V~~YI~~~~LY~ 196 (197)
T COG1057 177 VDYLLPDSVLSYIEERGLYR 196 (197)
T ss_pred chhcCCHHHHHHHHHhcccc
Confidence 99999999999999999996
No 7
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=100.00 E-value=1.1e-37 Score=242.99 Aligned_cols=159 Identities=28% Similarity=0.331 Sum_probs=137.4
Q ss_pred CCCCCCCCCCC-CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEech
Q 030204 1 MSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSD 79 (181)
Q Consensus 1 ~~P~~~~~~K~-~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D 79 (181)
++|+..+++|+ ..+++++|++||++++++.+++.|+++|+++++++||++||+++++.||+ .+++||||+|
T Consensus 33 ~~~~~~~~~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~~~t~~tl~~l~~~~p~--------~~~~~liG~D 104 (192)
T cd02165 33 LLPSANPPHKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGPSYTIDTLEELRERYPN--------AELYFIIGSD 104 (192)
T ss_pred EEeCCCCCCCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCCCCHHHHHHHHHHhccC--------CCEEEEEcHH
Confidence 47899999886 68999999999999999999999999999999999999999999999997 5899999999
Q ss_pred hhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCc
Q 030204 80 LLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKY 159 (181)
Q Consensus 80 ~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~ 159 (181)
++.+|++|+.| ++|++.++|+|++|+|+........ .......++.+++ .+..+||||+||++++.|+++.+
T Consensus 105 ~l~~~~~W~~~-----~~i~~~~~~iv~~R~g~~~~~~~~~--~~~~~~~~~~~~~-~~~~~iSST~IR~~~~~g~~~~~ 176 (192)
T cd02165 105 NLIRLPKWYDW-----EELLSLVHLVVAPRPGYPIEDASLE--KLLLPGGRIILLD-NPLLNISSTEIRERLKNGKSIRY 176 (192)
T ss_pred HhhhcccccCH-----HHHHHhCcEEEEeCCCCCcccchhh--hhccCCCcEEEec-CCccccCHHHHHHHHHcCCChhH
Confidence 99999954444 9999999999999999764321110 0111235677775 56789999999999999999999
Q ss_pred cChHHHHHHHHhCCCC
Q 030204 160 LTEDKVIDYIRESRLY 175 (181)
Q Consensus 160 lvp~~V~~yI~~~~LY 175 (181)
+||++|.+||++|+||
T Consensus 177 lvp~~V~~yI~~~~lY 192 (192)
T cd02165 177 LLPPAVADYIKEHGLY 192 (192)
T ss_pred hCCHHHHHHHHHccCC
Confidence 9999999999999999
No 8
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=8.8e-37 Score=234.45 Aligned_cols=136 Identities=21% Similarity=0.234 Sum_probs=122.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCC--CceeechhhhcC---CCccchHHHHHHHHHHhcccccccCCCceEEEE
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSS--DFIMVDPWEANQ---SGYQRTLTVLSRVKNFLIEAGLISTESLKVMLV 75 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~--~~~~v~~~E~~~---~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fi 75 (181)
|+|++++|.|+..+++++|++|+++|+++. +++.|+++|+++ ++++||++||++++++||+ .+++||
T Consensus 33 ~vP~~~~~~~k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~~~~~~~yT~~tl~~l~~~~p~--------~~~~~i 104 (174)
T PRK08887 33 LVPSIAHAWGKTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELYAPDESVTTYALLTRLQELYPE--------ADLTFV 104 (174)
T ss_pred EEECCCCcccCCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhccCCCCcchHHHHHHHHHHCCC--------CeEEEE
Confidence 579986555558889999999999999995 799999999987 7889999999999999998 589999
Q ss_pred EechhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCC
Q 030204 76 CGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 155 (181)
Q Consensus 76 iG~D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~ 155 (181)
||+|++.+|++|++| ++|++.+.++|++| ..+||||+||++++.|+
T Consensus 105 iG~D~l~~l~~W~~~-----~~i~~~~~l~~~~~-----------------------------~~~ISST~IR~~l~~g~ 150 (174)
T PRK08887 105 IGPDNFLKFAKFYKA-----DEITQRWTVMACPE-----------------------------KVPIRSTDIRNALQNGK 150 (174)
T ss_pred EccchHHHHHHhCCH-----HHHHhhCeEEEeCC-----------------------------CCCcCHHHHHHHHHcCC
Confidence 999999999976666 99999999998754 14799999999999999
Q ss_pred CCCccChHHHHHHHHhCCCCCCC
Q 030204 156 SIKYLTEDKVIDYIRESRLYLNS 178 (181)
Q Consensus 156 ~~~~lvp~~V~~yI~~~~LY~~~ 178 (181)
++.++||++|.+||.+|+||..+
T Consensus 151 ~i~~lvp~~V~~yI~~~~LY~~~ 173 (174)
T PRK08887 151 DISHLTTPGVARLLKEHQLYTEP 173 (174)
T ss_pred ChhHhCCHHHHHHHHHccccCCC
Confidence 99999999999999999999765
No 9
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=100.00 E-value=2.9e-36 Score=253.67 Aligned_cols=150 Identities=28% Similarity=0.299 Sum_probs=131.2
Q ss_pred CCCCCCCCCCC-CCC-CHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEec
Q 030204 1 MSPVNDAYKKR-GLI-SAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGS 78 (181)
Q Consensus 1 ~~P~~~~~~K~-~~~-~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~ 78 (181)
|+|++.+|+|+ ..+ ++++|++|+++|++++|++.|+++|+++++++||++||++++++||+ .+++||||+
T Consensus 35 ~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syt~~tl~~l~~~~p~--------~~~~~iiG~ 106 (342)
T PRK07152 35 FVPTYINPFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIKRQNVSYTIDTIKYFKKKYPN--------DEIYFIIGS 106 (342)
T ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHhCCCCCcHHHHHHHHHHhCCC--------CcEEEEecH
Confidence 58999999997 344 45999999999999999999999999999999999999999999998 589999999
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCC
Q 030204 79 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIK 158 (181)
Q Consensus 79 D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~ 158 (181)
|++.+|++|+.| ++|++.|+|+|++|+|+..... +. ..++++++ .+..+||||+||++++.|+
T Consensus 107 D~~~~l~~W~~~-----~~l~~~~~~iv~~R~g~~~~~~------~~--~~~i~~~~-~~~~~iSST~IR~~~~~~~--- 169 (342)
T PRK07152 107 DNLEKFKKWKNI-----EEILKKVQIVVFKRKKNINKKN------LK--KYNVLLLK-NKNLNISSTKIRKGNLLGK--- 169 (342)
T ss_pred HHhhhcccccCH-----HHHHHhCCEEEEECCCCCcccc------cc--cCcEEEec-CCccccCHHHHHHHHHcCC---
Confidence 999999976665 9999999999999999764321 11 13677775 5568999999999999876
Q ss_pred ccChHHHHHHHHhCCCCCC
Q 030204 159 YLTEDKVIDYIRESRLYLN 177 (181)
Q Consensus 159 ~lvp~~V~~yI~~~~LY~~ 177 (181)
||++|.+||.+|+||..
T Consensus 170 --vP~~V~~YI~~~~LY~e 186 (342)
T PRK07152 170 --LDPKVNDYINENFLYLE 186 (342)
T ss_pred --CCHHHHHHHHHcCcccc
Confidence 99999999999999964
No 10
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.4e-32 Score=209.59 Aligned_cols=179 Identities=47% Similarity=0.834 Sum_probs=151.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhccc-c-----cccCCCceEEE
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEA-G-----LISTESLKVML 74 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~-~-----~~~~~~~~~~f 74 (181)
++|+++.|+|++++|..+|+.|+++|.+...|+.++.||--|+...-|++.|+|+++....+ | +-.-...++.+
T Consensus 48 mSPV~DaYkKKgLipa~hrv~~~ElAt~~Skwl~vD~weslQ~~wt~T~~vlrHhqe~~~~kr~~~~~~~~~k~~~kVmL 127 (234)
T KOG3199|consen 48 MSPVGDAYKKKGLIPAYHRVRMVELATETSKWLMVDGWESLQKEWTRTVKVLRHHQEELNRKRGGTELSPGTKSDVKVML 127 (234)
T ss_pred ecccchhhhccccchhhhHHHHHHhhhccccceecchhhhccHHHhhhhHHHHHHHHHHHHHhccccccccccCCceEEE
Confidence 58999999999999999999999999999999999999999999999999999998743221 1 11112357999
Q ss_pred EEechhhhhCCCCCC-CCcchHHHHhhcccEEEEcCCCCChhhhhhchH-HHhhcCCcEEEEcCCCCCcccHHHHHHHHH
Q 030204 75 VCGSDLLESFAIPGF-WMPEQVWTICRNFGVICIRREGQDVEKIISDNE-ILDKNKGNIKLVDELVPNQISSTRIRDCIC 152 (181)
Q Consensus 75 iiG~D~~~~l~~w~~-W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ISST~IR~~l~ 152 (181)
+||.|.+.+|..|+. |+..++..|+..++++|+.|.|.+...++.... .+.+...++.+.++..+++||||.||++++
T Consensus 128 lcG~Dliesf~~p~~~w~~~dl~~i~~~yGl~cv~r~gsD~~~~i~~~d~i~~~~~~~l~ikn~~~~N~ISStklr~ai~ 207 (234)
T KOG3199|consen 128 LCGGDLIESFGEPNLVWKDEDLRTILGEYGLVCVTREGSDVENFLSSHDIILEKRRNILHIKNEIVPNDISSTKLRQAIR 207 (234)
T ss_pred EeCchHHHhccCCCCCcchhhHHHHHhhCcEEEEeccCCCHHHHHhccHHHHHhhcceEEEeeeeecCCcchHHHHHHHH
Confidence 999999999999965 888889999999999999999999888766523 443334455555555669999999999999
Q ss_pred cCCCCCccChHHHHHHHHhCCCCCCCC
Q 030204 153 RGLSIKYLTEDKVIDYIRESRLYLNSN 179 (181)
Q Consensus 153 ~g~~~~~lvp~~V~~yI~~~~LY~~~~ 179 (181)
+|+++++++|+.|++||++|+||...+
T Consensus 208 r~~SVkYl~PD~Vi~yI~~h~LY~~~~ 234 (234)
T KOG3199|consen 208 RGQSVKYLTPDSVIEYIREHNLYSSES 234 (234)
T ss_pred cCCeeEeeCcHHHHHHHHHhhchhccC
Confidence 999999999999999999999998643
No 11
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.88 E-value=5.7e-23 Score=155.12 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=96.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
++|+ .+|+|+..++.++|++|+++|+++.|+|.|+++| +||++|+++++. .+||+|.|+
T Consensus 31 ~~~~-~~p~k~~~~~~~~R~~m~~~a~~~~~~~~v~~~e------~yt~dt~~~l~~--------------~~~i~G~~~ 89 (155)
T TIGR01510 31 VAVA-KNPSKKPLFSLEERVELIKDATKHLPNVRVDVFD------GLLVDYAKELGA--------------TFIVRGLRA 89 (155)
T ss_pred EEEc-CCCCCCCCcCHHHHHHHHHHHHhhCCCeEEcCcc------chHHHHHHHcCC--------------CEEEecCcc
Confidence 4677 5688878899999999999999999999999998 599999998862 257888887
Q ss_pred hhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCcc
Q 030204 81 LESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYL 160 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~l 160 (181)
+.+ | +++++.+. +.|.. .. ....++++..++..+||||.||++++.|++++++
T Consensus 90 ~~~------~-----~~~~~~~~---~~r~~---~~----------~~~~i~~~~~~~~~~iSST~IR~~i~~g~~~~~l 142 (155)
T TIGR01510 90 ATD------F-----EYELQMAL---MNKHL---AP----------EIETVFLMASPEYAFVSSSLVKEIASFGGDVSNL 142 (155)
T ss_pred hhh------H-----HHHHHHHh---hCccc---cc----------CCcEEEEeCCcchhhccHHHHHHHHHcCCChhHH
Confidence 654 5 56666666 35521 00 0124555543334599999999999999999999
Q ss_pred ChHHHHHHHHhC
Q 030204 161 TEDKVIDYIRES 172 (181)
Q Consensus 161 vp~~V~~yI~~~ 172 (181)
||++|.+||+++
T Consensus 143 vP~~V~~YI~~~ 154 (155)
T TIGR01510 143 VPPAVARRLKAK 154 (155)
T ss_pred CCHHHHHHHHHh
Confidence 999999999885
No 12
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.87 E-value=2.5e-22 Score=151.29 Aligned_cols=123 Identities=17% Similarity=0.143 Sum_probs=96.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
++|+.+ |+|+..++.++|++|+++|+++.|++.|+++| +||++|+++++. + +|++|.|+
T Consensus 31 v~~~~~-~~k~~~~~~~~R~~ml~~a~~~~~~~~v~~~e------s~t~~~l~~l~~-------------~-~~i~G~d~ 89 (153)
T cd02163 31 VAVAVN-PSKKPLFSLEERVELIREATKHLPNVEVDGFD------GLLVDFARKHGA-------------N-VIVRGLRA 89 (153)
T ss_pred EEEcCC-CCCCCCCCHHHHHHHHHHHHcCCCCEEecCCc------chHHHHHHHcCC-------------C-EEEECCcc
Confidence 457754 46777899999999999999999999999985 799999997753 2 58999998
Q ss_pred hhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCcc
Q 030204 81 LESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYL 160 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~l 160 (181)
+.++ ++++ +++++.|++... ...++++..+...+||||.||++++.|+++.++
T Consensus 90 ~~~~-----------e~~~---~~~~~~r~~~~~-------------~~~i~~~~~~~~~~iSST~IR~~~~~g~~i~~l 142 (153)
T cd02163 90 VSDF-----------EYEF---QMAGMNRKLAPE-------------IETVFLMASPEYSFISSSLVKEIARFGGDVSGF 142 (153)
T ss_pred hhhH-----------HHHH---HHHHhCCCCCCC-------------CcEEEEeCCCccceecHHHHHHHHHcCCChhHh
Confidence 8764 3443 555688987321 124566653323579999999999999999999
Q ss_pred ChHHHHHHHHh
Q 030204 161 TEDKVIDYIRE 171 (181)
Q Consensus 161 vp~~V~~yI~~ 171 (181)
||++|.+||++
T Consensus 143 vP~~V~~yI~~ 153 (153)
T cd02163 143 VPPVVAKALKE 153 (153)
T ss_pred CCHHHHHHHhC
Confidence 99999999974
No 13
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.83 E-value=1.4e-20 Score=142.57 Aligned_cols=123 Identities=16% Similarity=0.113 Sum_probs=94.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhh
Q 030204 2 SPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 81 (181)
Q Consensus 2 ~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~ 81 (181)
+|+. +|+|+..+++++|++|+++|+++.+++.|+++| +||++++++++. -+|+.|.|++
T Consensus 34 ~~~~-~~~k~~~~~~~~R~~ml~~a~~~~~~v~v~~~e------~~t~~~~~~~~~--------------~~~~~gl~~w 92 (159)
T PRK00168 34 AVAI-NPSKKPLFSLEERVELIREATAHLPNVEVVSFD------GLLVDFAREVGA--------------TVIVRGLRAV 92 (159)
T ss_pred EECC-CCCCCCCCCHHHHHHHHHHHHcCCCCEEEecCC------ccHHHHHHHcCC--------------CEEEecCcch
Confidence 4544 457778999999999999999999999999886 689999876632 2578887754
Q ss_pred hhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCccC
Q 030204 82 ESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLT 161 (181)
Q Consensus 82 ~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~lv 161 (181)
. .| +.+++.+. +.|++... .+.++++..+...+||||.||+.++.|++++++|
T Consensus 93 ~------d~-----e~~~~~~~---~~r~~~~~-------------~~~i~~~~~~~~~~ISST~IR~~i~~g~~i~~lV 145 (159)
T PRK00168 93 S------DF-----EYEFQMAG---MNRKLAPE-------------IETVFLMPSPEYSFISSSLVKEVARLGGDVSGFV 145 (159)
T ss_pred h------hH-----HHHHHHHH---hCCCCCCC-------------CcEEEEeCCCCcceecHHHHHHHHHcCCChhHHC
Confidence 3 46 55555444 88886431 1245555433236899999999999999999999
Q ss_pred hHHHHHHHHhC
Q 030204 162 EDKVIDYIRES 172 (181)
Q Consensus 162 p~~V~~yI~~~ 172 (181)
|++|.+||.++
T Consensus 146 P~~V~~yI~~~ 156 (159)
T PRK00168 146 PPAVAKALKEK 156 (159)
T ss_pred CHHHHHHHHHH
Confidence 99999999886
No 14
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.76 E-value=2.6e-19 Score=133.09 Aligned_cols=124 Identities=33% Similarity=0.464 Sum_probs=94.1
Q ss_pred CCCCCCCCCC--CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEech
Q 030204 2 SPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSD 79 (181)
Q Consensus 2 ~P~~~~~~K~--~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D 79 (181)
+|+..+|+|. ..+++++|++|+++++.+.+++.|+++|..+. ++.+++ .+++||+|+|
T Consensus 32 v~~~~~~~k~~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~------------~~~~~~--------~~~~~v~g~D 91 (157)
T PF01467_consen 32 VPSDNSPHKDKKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQD------------KKKYPD--------VKIYFVIGAD 91 (157)
T ss_dssp EEEEHHCHSTTSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSS------------HHHSTS--------SCEEEEEECT
T ss_pred ccccccccccccccCcHHHHHHHHHHHHhhcCCccccchhHHhH------------hhhccc--------cccceeccCC
Confidence 5677778774 58999999999999999999999999999776 677887 5899999999
Q ss_pred hhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHH
Q 030204 80 LLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDC 150 (181)
Q Consensus 80 ~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~ 150 (181)
++.+++.|+.| +++++.++++|+.|++............+........++......+||||+||++
T Consensus 92 ~~~~~~~~~~~-----~~~~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~~ 157 (157)
T PF01467_consen 92 NLRNFPKWRDW-----QEILKEVNIIVVSRGGDDPIETISDDEILEKYPLGIIFILDPPRNEISSTEIRER 157 (157)
T ss_dssp HHEEEEESTTH-----HHHHHHHHEEEEEHHHTTTHEEEEHCHHHHHTTCEEEEEEEGGGTTSSHHHHHHH
T ss_pred ceeeecCCCcH-----HHHHHhCCEEEEEcCCCCccchhhhccccccccceeEEEecCCCCccCHHHHhcC
Confidence 99999954444 9999999999999996653321111122222333444443355577999999985
No 15
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.20 E-value=3.6e-11 Score=89.41 Aligned_cols=122 Identities=22% Similarity=0.220 Sum_probs=91.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhh
Q 030204 4 VNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLES 83 (181)
Q Consensus 4 ~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~ 83 (181)
...+|.|+++++.++|++|++.++++.++++|..++ + .|..+.++..- -++|.|-.+..+
T Consensus 36 V~~np~K~plFsleER~~l~~~~~~~l~nV~V~~f~----~------Llvd~ak~~~a----------~~ivRGLR~~sD 95 (159)
T COG0669 36 VAINPSKKPLFSLEERVELIREATKHLPNVEVVGFS----G------LLVDYAKKLGA----------TVLVRGLRAVSD 95 (159)
T ss_pred EEeCCCcCCCcCHHHHHHHHHHHhcCCCceEEEecc----c------HHHHHHHHcCC----------CEEEEeccccch
Confidence 356899999999999999999999999999998765 2 33333333322 389999999999
Q ss_pred CCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCccChH
Q 030204 84 FAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTED 163 (181)
Q Consensus 84 l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~lvp~ 163 (181)
|+ | |- ++.-++|. +..--+++++........||||.||+....|++++.+||+
T Consensus 96 fe----Y-----E~-----qma~~N~~-------------L~~eveTvFl~~s~~~~~iSSs~Vreia~~ggdvs~~VP~ 148 (159)
T COG0669 96 FE----Y-----EL-----QMAHMNRK-------------LAPEVETVFLMPSPEYSFISSSLVREIAAFGGDVSEFVPE 148 (159)
T ss_pred HH----H-----HH-----HHHHHHHh-------------hcccccEEEecCCcceehhhHHHHHHHHHhCCCchhhCCH
Confidence 98 5 21 11122222 1111256777765666899999999999999999999999
Q ss_pred HHHHHHHhC
Q 030204 164 KVIDYIRES 172 (181)
Q Consensus 164 ~V~~yI~~~ 172 (181)
.|.+-++++
T Consensus 149 ~V~~~l~~k 157 (159)
T COG0669 149 AVARALRAK 157 (159)
T ss_pred HHHHHHHHh
Confidence 999998764
No 16
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.08 E-value=1.4e-09 Score=82.89 Aligned_cols=121 Identities=16% Similarity=0.140 Sum_probs=74.8
Q ss_pred CCCCCCCCCC-CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHH-HHHHHHHhcccccccCCCceEEEEEech
Q 030204 2 SPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTV-LSRVKNFLIEAGLISTESLKVMLVCGSD 79 (181)
Q Consensus 2 ~P~~~~~~K~-~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~t-l~~l~~~~~~~~~~~~~~~~~~fiiG~D 79 (181)
+|++++++|. ..+++++|++|++.++++.+...+..+-+ +.. ...+. ..+++...|. .+ .+..|.
T Consensus 33 i~s~~~~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~--~d~-~~~~~w~~~v~~~~p~--------~D-~vf~~~- 99 (165)
T TIGR01527 33 IGSAQESHTLENPFTAGERILMITQSLKEVGDLTYYIIPI--EDI-ERNSIWVSYVESMTPP--------FD-VVYSNN- 99 (165)
T ss_pred EcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEec--CCc-cHHHHHHHHHHHhCCC--------CC-EEEECC-
Confidence 5788888886 68899999999999998765222222111 111 11111 2333333343 23 344442
Q ss_pred hhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCc
Q 030204 80 LLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKY 159 (181)
Q Consensus 80 ~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~ 159 (181)
+ .| +.+++..++-|.. +.......+|||+||+.+..|.+++.
T Consensus 100 -------~-~~-----~~~f~e~g~~v~~-------------------------~p~~~r~~~S~T~IR~~i~~~~~W~~ 141 (165)
T TIGR01527 100 -------P-LV-----RRLFKEAGYEVKR-------------------------PPMFNRKEYSGTEIRRRMLNGEDWEH 141 (165)
T ss_pred -------H-HH-----HHHHHHcCCEEEE-------------------------CCCcCCCcccHHHHHHHHHcCCChhh
Confidence 1 34 5555555544332 10011348899999999999999999
Q ss_pred cChHHHHHHHHhCC
Q 030204 160 LTEDKVIDYIRESR 173 (181)
Q Consensus 160 lvp~~V~~yI~~~~ 173 (181)
|||++|.+||.+-+
T Consensus 142 lVP~~v~~~i~~i~ 155 (165)
T TIGR01527 142 LVPKAVADVIKEIK 155 (165)
T ss_pred hCCHHHHHHHHHcC
Confidence 99999999999854
No 17
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.04 E-value=1.1e-09 Score=84.62 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHc--CCCCCccChHHHHHHHHhCC
Q 030204 141 QISSTRIRDCICR--GLSIKYLTEDKVIDYIRESR 173 (181)
Q Consensus 141 ~ISST~IR~~l~~--g~~~~~lvp~~V~~yI~~~~ 173 (181)
+||||.||+++.. |.+++++||++|.+||.+.+
T Consensus 132 ~iSsT~IR~~i~~~~g~~~~~lvP~~V~~~I~~~~ 166 (181)
T cd02168 132 DLNATDIRRAYFEGKEAMYRAALPAGVYDFLTAFQ 166 (181)
T ss_pred ccCHHHHHHHHHhcCCCChhHhCCHHHHHHHHHhC
Confidence 7999999999999 67999999999999999863
No 18
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=98.99 E-value=1.2e-09 Score=80.05 Aligned_cols=107 Identities=17% Similarity=0.118 Sum_probs=74.6
Q ss_pred CCCCCCCCC---CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEec
Q 030204 2 SPVNDAYKK---RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGS 78 (181)
Q Consensus 2 ~P~~~~~~K---~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~ 78 (181)
+|+.++|.+ ...++.++|++|++.+.++.. .+..++......+++.+.+..+...++ ..++++|.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~G~ 100 (143)
T cd02039 33 IIVSNPPKKKRNKDPFSLHERVEMLKEILKDRL--KVVPVDFPEVKILLAVVFILKILLKVG----------PDKVVVGE 100 (143)
T ss_pred EEcCCChhhcccccCCCHHHHHHHHHHhccCCc--EEEEEecChhhccCHHHHHHHHHHHcC----------CcEEEECC
Confidence 566666654 368899999999999997333 455555555556677766655555553 35999999
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHH
Q 030204 79 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRD 149 (181)
Q Consensus 79 D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~ 149 (181)
|....+. +|++...+++...+.+++++|.+ ....||||.||+
T Consensus 101 d~~~~~~---~~~~~~~~~~~~~~~vv~~~~~~--------------------------~~~~iSSt~IR~ 142 (143)
T cd02039 101 DFAFGKN---ASYNKDLKELFLDIEIVEVPRVR--------------------------DGKKISSTLIRE 142 (143)
T ss_pred ccccCCc---hhhhHHHHHhCCceEEEeeEecC--------------------------CCcEEehHHhhc
Confidence 9999999 56533336666667777777653 124799999996
No 19
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=98.99 E-value=7.2e-09 Score=78.83 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=32.0
Q ss_pred CcccHHHHHHHHHcCCCCCccChHHHHHHHHhCCC
Q 030204 140 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRL 174 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~L 174 (181)
..||||.||+.+..|++++.+||++|.+||.+-+.
T Consensus 124 ~~~s~t~iR~~~~~~~~~~~~vp~~v~~~l~~~~~ 158 (163)
T cd02166 124 EEYSGTEIRRLMLGGEDWEELVPKSVAEVIKEIGG 158 (163)
T ss_pred CCCCHHHHHHHHHcCCchhhcCCHHHHHHHHHcCC
Confidence 36999999999999999999999999999998765
No 20
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=98.98 E-value=7.7e-09 Score=88.38 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=100.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc-----eeechhhhcCCCccchHHHHHH--HHHHhcccccccCCCceEE
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDF-----IMVDPWEANQSGYQRTLTVLSR--VKNFLIEAGLISTESLKVM 73 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~-----~~v~~~E~~~~~~syT~~tl~~--l~~~~~~~~~~~~~~~~~~ 73 (181)
|+|... |+|...++++.|++|++++++.++. +.+.++|....|++ ++|.| +++.|+. . +
T Consensus 217 l~P~~g-~~k~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~em~~agpr---eall~Aiir~nyG~---------t-h 282 (383)
T TIGR00339 217 VHPLVG-LTKPGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPLAMRYAGPR---EAIWHAIIRKNYGA---------T-H 282 (383)
T ss_pred EEeCCC-CCCCCCCCHHHHHHHHHHHHhhCCCCCceEEEecchHhhcCCcH---HHHHHHHHHHHCCC---------C-E
Confidence 467777 7888999999999999999999866 88999999999987 99999 9999975 3 9
Q ss_pred EEEechhhhhCCC--CCCCC-cchHHHHhhccc----EEEEcCC--CCChhhhhhchHHHhhcCCcEEEEcCC-----CC
Q 030204 74 LVCGSDLLESFAI--PGFWM-PEQVWTICRNFG----VICIRRE--GQDVEKIISDNEILDKNKGNIKLVDEL-----VP 139 (181)
Q Consensus 74 fiiG~D~~~~l~~--w~~W~-~~~~~~l~~~~~----~vv~~R~--g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 139 (181)
||+|.|.+.--+. -..+| ..+-++|++.+. +-++.-+ -|.. -++.+...... ..
T Consensus 283 ~IiG~Dhag~g~~~~~~~~Y~~~~aq~i~~~~~~~l~I~~v~~~~~~Yc~------------~c~~~~~~~~cph~~~~~ 350 (383)
T TIGR00339 283 FIVGRDHAGPGSNSKGQDFYGPYDAQELFEKYKAELGIKIVPFEHVAYCP------------DEDEYAPADQAGHTNLRT 350 (383)
T ss_pred EEECCCCCCCCCCCccccCCCcchHHHHHHhCccccCceEEecceeEEEc------------ccCcEeecccCCCCccce
Confidence 9999998755410 00233 334488886541 2222111 1110 01222222211 14
Q ss_pred CcccHHHHHHHHHcCCCC-CccChHHHHHHHH
Q 030204 140 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIR 170 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~~~-~~lvp~~V~~yI~ 170 (181)
..||.|.||+.++.|..+ ..++.++|.+-++
T Consensus 351 ~~~sgt~ir~~L~~G~~pP~~f~rpeV~~~L~ 382 (383)
T TIGR00339 351 LNISGTKLRGMLREGVFPPEWFSRPEVVKILR 382 (383)
T ss_pred eeeCHHHHHHHHHCCCCCCCccCcHHHHHHHh
Confidence 689999999999999866 5588899988765
No 21
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.83 E-value=6e-08 Score=74.54 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=31.3
Q ss_pred CcccHHHHHHHHHcCCCCCccChHHHHHHHHhCC
Q 030204 140 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 173 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~ 173 (181)
.+||||.||+.+..|++++.+||++|.+||.+-+
T Consensus 125 ~~iSsT~IR~~i~~g~~w~~~VPp~V~~~i~~~~ 158 (174)
T PRK01153 125 EEYSGTEIRRRMIEGDPWEELVPKSVAEVIKEID 158 (174)
T ss_pred CCCCHHHHHHHHHcCCchhhhCCHHHHHHHHHhC
Confidence 4899999999999999999999999999998754
No 22
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.74 E-value=8.1e-08 Score=74.34 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=26.3
Q ss_pred CcccHHHHHHHHHcCC--CCCccChHHHHHHH
Q 030204 140 NQISSTRIRDCICRGL--SIKYLTEDKVIDYI 169 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~--~~~~lvp~~V~~yI 169 (181)
..||||.||+.|.+|. .+..+||+.+.+|+
T Consensus 151 ~~iSST~IR~~L~~G~v~~a~~lLP~~~~~~~ 182 (182)
T smart00764 151 QPISASTVRKLLKEGNLEELAKLVPETTLNFL 182 (182)
T ss_pred cEECHHHHHHHHHcCCHHHHHHhCCHHHHhhC
Confidence 4799999999999986 77899999998873
No 23
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.61 E-value=9.2e-08 Score=79.34 Aligned_cols=134 Identities=12% Similarity=0.069 Sum_probs=74.5
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhh-CCCCC
Q 030204 10 KRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLES-FAIPG 88 (181)
Q Consensus 10 K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~-l~~w~ 88 (181)
++..+|+++|++|+++++++.|++.|..++ + ++++.+. ||. ||+--.|.... |.
T Consensus 152 ~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~----~--l~v~~~~-----~~~-----------~~~~~~~~~~~~~a--- 206 (297)
T cd02169 152 DKSLFSFADRFKLVKKGTKHLKNVTVHSGG----D--YIISSAT-----FPS-----------YFIKEQDVVIKAQT--- 206 (297)
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCEEEEecC----C--eeecccc-----Chh-----------hhcCChhHHHHHHh---
Confidence 456789999999999999999998887665 2 3444332 554 66666654422 22
Q ss_pred CCCcch-HHHHh-h--cccEEEEc---CCCCChhhhhhchHHHhhcCCcEEEEcCC--CCCcccHHHHHHHHHcCC--CC
Q 030204 89 FWMPEQ-VWTIC-R--NFGVICIR---REGQDVEKIISDNEILDKNKGNIKLVDEL--VPNQISSTRIRDCICRGL--SI 157 (181)
Q Consensus 89 ~W~~~~-~~~l~-~--~~~~vv~~---R~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ISST~IR~~l~~g~--~~ 157 (181)
.....+ ++ ++ + .+.-+|+. |-|..-.........-.++...+..++.. ....||||.||+.|.+|. .+
T Consensus 207 ~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~~~~~gf~v~~v~~~~~~g~~ISST~IR~~l~~G~v~~A 285 (297)
T cd02169 207 ALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEELLSPAIEVIEIERKKYDGQPISASTVRQLLKEGNLEEI 285 (297)
T ss_pred cCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHhcccCCCEEEEecccccCCcEEcHHHHHHHHHcCCHHHH
Confidence 222111 12 22 1 12333331 22221111000000001112234444311 125899999999999996 77
Q ss_pred CccChHHHHHHH
Q 030204 158 KYLTEDKVIDYI 169 (181)
Q Consensus 158 ~~lvp~~V~~yI 169 (181)
..|||+.|.+++
T Consensus 286 ~~lLp~~~~~~~ 297 (297)
T cd02169 286 AKLVPETTYEFL 297 (297)
T ss_pred HHhCCHHhHhhC
Confidence 899999998874
No 24
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.54 E-value=3.5e-07 Score=77.31 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=70.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCC--ceeechhhhcC-CCccchHHHHHHHHHHh-cccccccCCCceEEEEEechh
Q 030204 5 NDAYKKRGLISAEHRINLCNLACKSSD--FIMVDPWEANQ-SGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 5 ~~~~~K~~~~~~~~Rl~M~~~ai~~~~--~~~v~~~E~~~-~~~syT~~tl~~l~~~~-~~~~~~~~~~~~~~fiiG~D~ 80 (181)
++++.|++.+++++|++|++.++++.+ ++.+-.++-.. +...+.-++-....+.. |+ .++ .++|.|.
T Consensus 44 ~~~~~~~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi~d~~~~~~~W~~~v~~~v~~~~~~~--------~~~-~~~g~~~ 114 (340)
T PRK05379 44 DLARSIKNPFSFEERAQMIRAALAGIDLARVTIRPLRDSLYNDSLWLAEVQAAVAEHAGAD--------ARI-GLIGHEK 114 (340)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHhhcCCCceEEEEECCCCCcChHHHHHHHHHHHHhccCCC--------CcE-EEECCcC
Confidence 445667788999999999999999543 45555554321 11112112211122211 22 344 4448554
Q ss_pred hhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCc-
Q 030204 81 LESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKY- 159 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~- 159 (181)
=. . .++ .+++...+++ .+ .....+|||.||+.+..|.++..
T Consensus 115 ~~--~---~~~----~~~f~~~~~~---------------------------~~--~~~~~~s~T~iR~~~~~~~~~~~~ 156 (340)
T PRK05379 115 DA--S---SYY----LRSFPQWELV---------------------------DV--PNTEDLSATEIRDAYFEGRISSFY 156 (340)
T ss_pred CC--C---hHH----HHhccccccc---------------------------cC--CcccccCccHHHHHHHcCCCchhh
Confidence 11 1 121 2333222222 01 12457999999999999998766
Q ss_pred --cChHHHHHHHHhC
Q 030204 160 --LTEDKVIDYIRES 172 (181)
Q Consensus 160 --lvp~~V~~yI~~~ 172 (181)
+||++|.+||.+-
T Consensus 157 ~~~vP~~v~~~l~~~ 171 (340)
T PRK05379 157 GWAVPAPVYAFLEAF 171 (340)
T ss_pred hhcCCHHHHHHHHHh
Confidence 9999999999864
No 25
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=98.48 E-value=2.5e-07 Score=68.60 Aligned_cols=106 Identities=14% Similarity=0.024 Sum_probs=70.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhh
Q 030204 2 SPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 81 (181)
Q Consensus 2 ~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~ 81 (181)
+|+. +|+|+..++.++|++|+++++++.+++.|..++- | .+++ +.++.. --+.|.|-++.
T Consensus 34 ~v~~-np~K~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~---~--l~v~----~~~~~~----------a~~ivrGlR~~ 93 (140)
T PRK13964 34 VVSI-NPDKSNASDLDSRFKNVKNKLKDFKNVEVLINEN---K--LTAE----IAKKLG----------ANFLIRSARNN 93 (140)
T ss_pred Eecc-CCCCCCCCCHHHHHHHHHHHHcCCCCcEEecCcC---C--cHHH----HHHHCC----------CeEEEEecCCC
Confidence 4554 4788888999999999999999999988875431 2 2333 333332 24899999999
Q ss_pred hhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcC
Q 030204 82 ESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRG 154 (181)
Q Consensus 82 ~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g 154 (181)
.+|+ | |-- +..++|. +...-.+++++.......||||.||+....|
T Consensus 94 ~Dfe----y-----E~~-----~a~~n~~-------------l~~~ietvfl~~~~~~~~iSSs~vre~~~~~ 139 (140)
T PRK13964 94 IDFQ----Y-----EIV-----LAAGNKS-------------LNNDLETILIIPDYDKIEYSSTLLRHKKFLK 139 (140)
T ss_pred ccHH----H-----HHH-----HHHHHHh-------------hcCCCeEEEeecCCCCCEEeHHHHHHHHHcc
Confidence 9887 5 211 1111221 1111246677765667899999999987765
No 26
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=98.08 E-value=2.1e-05 Score=59.47 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=35.1
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHhcCCCceeechhhhc
Q 030204 1 MSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEAN 41 (181)
Q Consensus 1 ~~P~~~~~~K~--~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~ 41 (181)
|+|++.++.|. ..+++++|++|+++++++.+++.|+.+|+.
T Consensus 31 vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~ 73 (158)
T cd02167 31 IIVGSDDTRDDARTGLPLEKRLRWLREIFPDQENIVVHTLNEP 73 (158)
T ss_pred EEECCCCcccccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 46777777763 588999999999999999999999998874
No 27
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.07 E-value=2.5e-05 Score=60.98 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=30.5
Q ss_pred CcccHHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 030204 140 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 172 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~ 172 (181)
..+|+|.||+.+..|.++..+||++|.++|.+-
T Consensus 134 ~~~SaT~IR~~~~~g~~w~~lVP~~V~~~l~~~ 166 (196)
T PRK13793 134 DSISATPMREAYYQGKIKTDAFPKGTIQFLEEF 166 (196)
T ss_pred CccchHHHHHHHHcCCChhhhCCHHHHHHHHHh
Confidence 579999999999999999999999999999874
No 28
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=97.98 E-value=2.8e-05 Score=57.00 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCCC
Q 030204 12 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWM 91 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~ 91 (181)
..++.++|++|++. ++..+.+.+. . +.+.++.+.+.+|+ ++++|.|...... .|.
T Consensus 48 ~~~~~~eR~~~l~~-~~~vd~v~~~-----~-----~~~~~~~l~~~~~~-----------~vv~G~d~~fg~~---~~~ 102 (136)
T cd02170 48 PILPEEQRAEVVEA-LKYVDEVILG-----H-----PWSYFKPLEELKPD-----------VIVLGDDQKNGVD---EEE 102 (136)
T ss_pred CCCCHHHHHHHHHc-CCCcCEEEEC-----C-----CCCHhHHHHHHCCC-----------EEEECCCCCCCCc---chh
Confidence 68899999999996 5554443332 1 23455566665554 8999999876655 454
Q ss_pred cchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHH
Q 030204 92 PEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCIC 152 (181)
Q Consensus 92 ~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~ 152 (181)
+. +.|-+....+++.| . + ...||||.||+++.
T Consensus 103 ~~--~~l~~~g~~~~~~~--~-----------------------~--~~~vSSt~Ir~~i~ 134 (136)
T cd02170 103 VY--EELKKRGKVIEVPR--K-----------------------K--TEGISSSDIIKRIL 134 (136)
T ss_pred HH--HHHHHCCeEEEECC--C-----------------------C--CCCCcHHHHHHHHH
Confidence 42 55555544444443 0 1 24799999999885
No 29
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=97.66 E-value=0.00012 Score=61.76 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=29.7
Q ss_pred CcccHHHHHHHHHcCC--CCCccChHHHHHHHHhCC
Q 030204 140 NQISSTRIRDCICRGL--SIKYLTEDKVIDYIRESR 173 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~--~~~~lvp~~V~~yI~~~~ 173 (181)
..+|+|.||+.|..|. .+..+||+...+|+.++.
T Consensus 295 ~~~SASaIR~~L~~~~~~~i~~~VP~~t~~~l~~~~ 330 (332)
T TIGR00124 295 GPISASTVRELLAKGDWAAWAKLVPETTLHFLQNLL 330 (332)
T ss_pred CeeCHHHHHHHHHcCCHHHHHHhCCHHHHHHHHHhh
Confidence 4699999999998874 688999999999998764
No 30
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.22 E-value=0.00033 Score=53.63 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHcCC--CCCccChHHHHHHH
Q 030204 139 PNQISSTRIRDCICRGL--SIKYLTEDKVIDYI 169 (181)
Q Consensus 139 ~~~ISST~IR~~l~~g~--~~~~lvp~~V~~yI 169 (181)
...||+|.+|+.|++|. .++.+||+..++|+
T Consensus 150 g~~ISAS~VR~~l~~~~~~~i~~lVP~tT~~yl 182 (182)
T PF08218_consen 150 GEPISASRVRKLLKEGDFEEIKKLVPETTYDYL 182 (182)
T ss_pred CcEEcHHHHHHHHHcCCHHHHHHhCCHhhHhhC
Confidence 36999999999999985 67899999999885
No 31
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=96.91 E-value=0.0067 Score=46.65 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCCC
Q 030204 12 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWM 91 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~ 91 (181)
...+.++|++|++.. . .+.+.+-+++-.....+. -+.++.+....+- -.+++|.|---.-.. .+.
T Consensus 54 ~l~~~e~R~~~l~~l-~-vd~v~~~~f~~~~~~~s~-~~Fi~~il~~~~~----------~~ivvG~Df~FG~~~--~g~ 118 (180)
T cd02064 54 RLTTLEEKLELLESL-G-VDYLLVLPFDKEFASLSA-EEFVEDLLVKLNA----------KHVVVGFDFRFGKGR--SGD 118 (180)
T ss_pred cCCCHHHHHHHHHHc-C-CCEEEEeCCCHHHHcCCH-HHHHHHHHhhcCC----------eEEEEccCCCCCCCC--CCC
Confidence 478999999999974 2 555555544321111111 1334444333221 379999997544332 232
Q ss_pred cchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcC--CCCCcccHHHHHHHHHcCC
Q 030204 92 PEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE--LVPNQISSTRIRDCICRGL 155 (181)
Q Consensus 92 ~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ISST~IR~~l~~g~ 155 (181)
-..++++++..++-| .+++. .....||||.||+.|++|.
T Consensus 119 ~~~L~~~~~~~g~~v-------------------------~~v~~~~~~~~~iSST~IR~~i~~G~ 159 (180)
T cd02064 119 AELLKELGKKYGFEV-------------------------TVVPPVTLDGERVSSTRIREALAEGD 159 (180)
T ss_pred HHHHHHhhhhcCcEE-------------------------EEeCcEecCCcEEcHHHHHHHHHhCC
Confidence 111223333322222 22210 0125799999999999884
No 32
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.84 E-value=0.005 Score=50.80 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=29.8
Q ss_pred CcccHHHHHHHHHcCC--CCCccChHHHHHHHHhC
Q 030204 140 NQISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 172 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~--~~~~lvp~~V~~yI~~~ 172 (181)
..||+|.+|+.++++. .+..|||...++|+.+|
T Consensus 302 ~~ISAS~VR~~l~~~~~~~ia~lVP~tTl~Yl~~~ 336 (352)
T COG3053 302 MPISASRVRQLLAKNDLEAIANLVPATTLNYLQQH 336 (352)
T ss_pred CcccHHHHHHHHHhCCHHHHHhhCcHHHHHHHHHH
Confidence 6999999999999874 67899999999999876
No 33
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.58 E-value=0.013 Score=50.67 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhh
Q 030204 11 RGLISAEHRINLCNLACKSSDFIMVDPWEA 40 (181)
Q Consensus 11 ~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~ 40 (181)
+.+++.++|++|++.++++.++++|..++-
T Consensus 103 ~~~~s~~~R~~~l~~~~~~~~~v~v~~~~~ 132 (399)
T PRK08099 103 SQQPTVSDRLRWLLQTFKYQKNIKIHAFNE 132 (399)
T ss_pred cCCCCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 468899999999999999999998886654
No 34
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=96.46 E-value=0.0047 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=18.2
Q ss_pred CCCC-CCCCHHHHHHHHHHHhcC
Q 030204 8 YKKR-GLISAEHRINLCNLACKS 29 (181)
Q Consensus 8 ~~K~-~~~~~~~Rl~M~~~ai~~ 29 (181)
++|+ ...|+++|++|++.+++.
T Consensus 43 ~~K~~~i~~~e~R~~~v~~~~~~ 65 (153)
T PRK00777 43 SYKKHKVRPYEVRLKNLKKFLKA 65 (153)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHh
Confidence 4454 578999999999999876
No 35
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=95.85 E-value=0.053 Score=39.14 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHH
Q 030204 11 RGLISAEHRINLCNLA 26 (181)
Q Consensus 11 ~~~~~~~~Rl~M~~~a 26 (181)
....+.++|++|++.+
T Consensus 47 ~~~~~~~~R~~~l~~~ 62 (129)
T cd02171 47 KAVIPYEQRAEILESI 62 (129)
T ss_pred CCCCCHHHHHHHHHcC
Confidence 3578999999999754
No 36
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.74 E-value=0.01 Score=49.91 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=33.1
Q ss_pred CCCCCCCCC-C-CCCCCHHHHHHHHHHHhcCCCc-eeechhh
Q 030204 1 MSPVNDAYK-K-RGLISAEHRINLCNLACKSSDF-IMVDPWE 39 (181)
Q Consensus 1 ~~P~~~~~~-K-~~~~~~~~Rl~M~~~ai~~~~~-~~v~~~E 39 (181)
|+|+..+|+ | +..++.++|++|+++++++.+. ++|++++
T Consensus 33 v~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~v~v~~~~ 74 (325)
T TIGR01526 33 IVVGSLFYDSKAKRPPPVQDRLRWLREIFKYQKNQIFIHHLN 74 (325)
T ss_pred EEECCCCcCccCCCCCCHHHHHHHHHHHhccCCCeEEEEEcC
Confidence 467777666 4 3689999999999999999999 9998877
No 37
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=95.26 E-value=0.28 Score=38.96 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=23.0
Q ss_pred CcccHHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 030204 140 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 171 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~~~-~~lvp~~V~~yI~~ 171 (181)
..||+|+||+.++.|..+ .-++.|+|.+.|++
T Consensus 181 ~~iSgt~ir~~L~~G~~pP~~f~rpeV~~~L~~ 213 (215)
T PF01747_consen 181 ISISGTEIRELLREGEEPPEWFMRPEVAAILRR 213 (215)
T ss_dssp EE--HHHHHHHHHTT----TTTS-HHHHHHHHH
T ss_pred eeeCHHHHHHHHHCcCCCCCCcCcHHHHHHHHH
Confidence 589999999999999876 45889999999876
No 38
>PRK07143 hypothetical protein; Provisional
Probab=94.93 E-value=0.21 Score=41.26 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=14.2
Q ss_pred CcccHHHHHHHHHcCC
Q 030204 140 NQISSTRIRDCICRGL 155 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~ 155 (181)
..||||.||+.|.+|.
T Consensus 148 ~~ISST~IR~~l~~G~ 163 (279)
T PRK07143 148 QKISTSLLKEFIEFGD 163 (279)
T ss_pred cEEcHHHHHHHHHcCC
Confidence 5899999999999873
No 39
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=93.75 E-value=0.69 Score=38.36 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHH-HHhcccccccCCCceEEEEEechhhhhCCCCCCCC
Q 030204 13 LISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK-NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWM 91 (181)
Q Consensus 13 ~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~-~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~ 91 (181)
..+.++|+++++.. +...+.+-++.......+. -+.++.+- +.+.- -.+++|.|.--.-.. .+.
T Consensus 53 l~~~~~k~~~l~~~--Gvd~~~~~~F~~~~a~ls~-e~Fi~~~l~~~l~~----------~~ivvG~Df~FG~~~--~G~ 117 (288)
T TIGR00083 53 LTPLEDKARQLQIK--GVEQLLVVVFDEEFANLSA-LQFIDQLIVKHLHV----------KFLVVGDDFRFGHDR--QGD 117 (288)
T ss_pred CCCHHHHHHHHHHc--CCCEEEEeCCCHHHHcCCH-HHHHHHHHHhccCC----------cEEEECCCccCCCCC--CCC
Confidence 77889999998853 4455555454322112211 13344332 33432 378999997544332 232
Q ss_pred cchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEc--CCCCCcccHHHHHHHHHcCC
Q 030204 92 PEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVD--ELVPNQISSTRIRDCICRGL 155 (181)
Q Consensus 92 ~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ISST~IR~~l~~g~ 155 (181)
-..++++.+.+++-|.. ++ ... ..||||.||+.|.+|.
T Consensus 118 ~~~L~~~~~~~g~~v~~-------------------------~~~~~~~-~~ISST~IR~~l~~G~ 157 (288)
T TIGR00083 118 FLLLQLFGNTTIFCVIV-------------------------KQLFCQD-IRISSSAIRQALKNGD 157 (288)
T ss_pred HHHHHHhccccCcEEEE-------------------------eccccCC-CeECHHHHHHHHHcCC
Confidence 11223333333322211 11 112 6899999999998873
No 40
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=93.71 E-value=1.6 Score=37.34 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=73.0
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCC---ceeechhhh--cCCCccchHHHH--HHHHHHhcccccccCCCceEEEEEechhh
Q 030204 9 KKRGLISAEHRINLCNLACKSSD---FIMVDPWEA--NQSGYQRTLTVL--SRVKNFLIEAGLISTESLKVMLVCGSDLL 81 (181)
Q Consensus 9 ~K~~~~~~~~Rl~M~~~ai~~~~---~~~v~~~E~--~~~~~syT~~tl--~~l~~~~~~~~~~~~~~~~~~fiiG~D~~ 81 (181)
.|.+-++.+-|++=.+.+++.++ .+.+..+.. .-.||. +.+ ..+++.|.- =.||+|-|..
T Consensus 197 ~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~~mryAGPr---EallhAiirkN~Gc----------ThfIvGrDHA 263 (353)
T cd00517 197 TKPGDVPDEVRMRAYEALLEEYYLPERTVLAILPLPMRYAGPR---EALWHAIIRKNYGA----------THFIVGRDHA 263 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccchhcccCcH---HHHHHHHHHHhCCC----------CeEEECCCCC
Confidence 35567777888888777777643 333433332 334543 333 233455543 2677776654
Q ss_pred hhCCCCCCCCc-chHHHHhhccc------EEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCC----CCcccHHHHHHH
Q 030204 82 ESFAIPGFWMP-EQVWTICRNFG------VICIRREGQDVEKIISDNEILDKNKGNIKLVDELV----PNQISSTRIRDC 150 (181)
Q Consensus 82 ~~l~~w~~W~~-~~~~~l~~~~~------~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ISST~IR~~ 150 (181)
---+. ..||+ ++-++|++.+. ++.+.---|.. -++.+......+ ...||+|.||+.
T Consensus 264 G~g~~-~~yY~~y~aq~i~~~~~~~l~I~~v~~~~~~Yc~------------~c~~~~~~~~cp~~~~~~~iSgt~iR~~ 330 (353)
T cd00517 264 GVGHP-GDYYGPYDAQEIFKKLAPELGIEPVPFREAAYCP------------KCDGMASEDTCPHGEDFLNISGTKLRKM 330 (353)
T ss_pred CCCCc-cccCCcchhHHHHHhCcccCCceEEecceeEEec------------CCCeEEecccCCCCCceeeeCHHHHHHH
Confidence 32210 12332 23366665442 11111100100 012222222111 468999999999
Q ss_pred HHcCCCC-CccChHHHHHHHHh
Q 030204 151 ICRGLSI-KYLTEDKVIDYIRE 171 (181)
Q Consensus 151 l~~g~~~-~~lvp~~V~~yI~~ 171 (181)
++.|..+ ..++.++|.+-|++
T Consensus 331 L~~G~~pP~~f~rpeV~~~L~~ 352 (353)
T cd00517 331 LREGEKPPEWFMRPEVAKVLRE 352 (353)
T ss_pred HHCCCCCCCccCcHHHHHHHhh
Confidence 9999866 55889999998875
No 41
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=92.96 E-value=0.81 Score=38.24 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHH-HHHHhcccccccCCCceEEEEEechhh
Q 030204 12 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLL 81 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~-l~~~~~~~~~~~~~~~~~~fiiG~D~~ 81 (181)
...+.++|+++++.. . .+.+.+-++.-+....+. -+.++. +.+.+.- -.+|+|.|--
T Consensus 68 ~l~t~eeR~~~l~~~-g-VD~~~~~~F~~~~~~ls~-e~Fi~~~l~~~l~~----------~~iVvG~Df~ 125 (305)
T PRK05627 68 RLTPLRDKAELLAEL-G-VDYVLVLPFDEEFAKLSA-EEFIEDLLVKGLNA----------KHVVVGFDFR 125 (305)
T ss_pred CCCCHHHHHHHHHHc-C-CCEEEEecCCHHHhcCCH-HHHHHHHHHhccCC----------CEEEECCCCC
Confidence 477999999999754 2 555554444211112121 234444 3333432 2799999973
No 42
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=91.72 E-value=5.5 Score=34.53 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=29.3
Q ss_pred CCcccHHHHHHHHHcCCCC-CccChHHHHHHHHhC
Q 030204 139 PNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRES 172 (181)
Q Consensus 139 ~~~ISST~IR~~l~~g~~~-~~lvp~~V~~yI~~~ 172 (181)
...||+|.||+.++.|..+ ..++.++|.+.|.+.
T Consensus 346 ~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~iL~~~ 380 (391)
T PRK04149 346 RVHLSGTKVREMLREGEKPPPEFSRPEVAEVLIKG 380 (391)
T ss_pred eEeeCHHHHHHHHHCcCCCCCccCcHHHHHHHHHH
Confidence 4689999999999999866 568999999988875
No 43
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=91.40 E-value=2.6 Score=31.47 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhh
Q 030204 12 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 82 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~ 82 (181)
+.++.++|.+|++.+ +-.+.+.+.. ....+.+.++++ -|+ +++.|.|...
T Consensus 51 pi~~~~eR~~~l~~~-~~Vd~Vi~~~------~~~~~~~~i~~~---~~d-----------~vv~G~d~~~ 100 (150)
T cd02174 51 PVMTEEERYEAVRHC-KWVDEVVEGA------PYVTTPEFLDKY---KCD-----------YVAHGDDIYL 100 (150)
T ss_pred CcCCHHHHHHHHHhc-CCCCeEEECC------CCCChHHHHHHh---CCC-----------EEEECCCCCC
Confidence 678999999999954 5444443321 223455666533 244 7889977553
No 44
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=87.22 E-value=14 Score=33.65 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=75.4
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCc--eeechhhh--cCCCccchHHHH--HHHHHHhcccccccCCCceEEEEEechhhh
Q 030204 9 KKRGLISAEHRINLCNLACKSSDF--IMVDPWEA--NQSGYQRTLTVL--SRVKNFLIEAGLISTESLKVMLVCGSDLLE 82 (181)
Q Consensus 9 ~K~~~~~~~~Rl~M~~~ai~~~~~--~~v~~~E~--~~~~~syT~~tl--~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~ 82 (181)
.|.+-++.+-|++=.+.+++..|. +.+..+.. .-.||. +.+ ..+++.|.- =.||+|-|..-
T Consensus 226 ~k~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~mryaGpr---eai~hAi~r~N~Gc----------th~ivGrdhAg 292 (568)
T PRK05537 226 TKPGDIDHFTRVRCYEALLDKYPPATTLLSLLPLAMRMAGPR---EALWHAIIRRNYGC----------THFIVGRDHAG 292 (568)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcEEEEeccchhcccCcH---HHHHHHHHHHhCCC----------CeEEECCCCCC
Confidence 456778888888888888776543 23333332 334543 333 223355543 26788877543
Q ss_pred hCC--CCCCCCc-chHHHHhhccc------EEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCC----CCCcccHHHHHH
Q 030204 83 SFA--IPGFWMP-EQVWTICRNFG------VICIRREGQDVEKIISDNEILDKNKGNIKLVDEL----VPNQISSTRIRD 149 (181)
Q Consensus 83 ~l~--~w~~W~~-~~~~~l~~~~~------~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ISST~IR~ 149 (181)
--. +-+.+|+ .+-++|++.+. ++.+.-.-|.. -++.+...... ....||+|.||+
T Consensus 293 ~~~~~~~g~~Y~~~~a~~i~~~~~~~l~i~~~~~~~~~Y~~------------~~~~~~~~~~cph~~~~~~~sgt~ir~ 360 (568)
T PRK05537 293 PGKDSRGKPFYGPYDAQELFAKYADEIGITMVPFKEMVYVQ------------DKAQYVPVDEVPQGATVLTISGTELRR 360 (568)
T ss_pred CCCCCcCcccCCchHHHHHHHhCccccCceEEecceeEEEc------------CCCeEEecCcCCCCcceeccCHHHHHH
Confidence 311 0112443 23467776541 11111111100 01222222211 236999999999
Q ss_pred HHHcCCCC-CccChHHHHHHHHhC
Q 030204 150 CICRGLSI-KYLTEDKVIDYIRES 172 (181)
Q Consensus 150 ~l~~g~~~-~~lvp~~V~~yI~~~ 172 (181)
.++.|..+ ..++.|+|.+-+.+.
T Consensus 361 ~l~~G~~pP~~f~rpeV~~iL~~~ 384 (568)
T PRK05537 361 RLREGLEIPEWFSFPEVVAELRRT 384 (568)
T ss_pred HHHCCCCCChhhcHHHHHHHHHHH
Confidence 99999866 468999999966553
No 45
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=85.60 E-value=0.9 Score=28.32 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=20.3
Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHhcCC
Q 030204 5 NDAYKKR-GLISAEHRINLCNLACKSS 30 (181)
Q Consensus 5 ~~~~~K~-~~~~~~~Rl~M~~~ai~~~ 30 (181)
..+++|+ ..++.++|.+|++.++...
T Consensus 38 ~~~~~~~~~~~~~~~R~~~~~~~~~~~ 64 (66)
T TIGR00125 38 FVNPLKGEPVFSLEERLEMLKALKYVD 64 (66)
T ss_pred hccccCCCCCCCHHHHHHHHHHhcccc
Confidence 3455666 6899999999999988654
No 46
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=77.88 E-value=2.9 Score=37.24 Aligned_cols=34 Identities=12% Similarity=0.340 Sum_probs=26.4
Q ss_pred cCCCceeechhhhcCCCccchHHHHHHHHHHhcc
Q 030204 28 KSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIE 61 (181)
Q Consensus 28 ~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~ 61 (181)
++.|-..-+.|+-.-+++.|.+|.++|++++|.+
T Consensus 113 RGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGD 146 (590)
T KOG0564|consen 113 RGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGD 146 (590)
T ss_pred cCCCCCCccccccccCCchhHHHHHHHHHHHhCC
Confidence 3445444455777677899999999999999987
No 47
>PRK13670 hypothetical protein; Provisional
Probab=77.20 E-value=2.8 Score=36.28 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=27.6
Q ss_pred CcccHHHHHHHHHcC--CCCCccChHHHHHHHHh
Q 030204 140 NQISSTRIRDCICRG--LSIKYLTEDKVIDYIRE 171 (181)
Q Consensus 140 ~~ISST~IR~~l~~g--~~~~~lvp~~V~~yI~~ 171 (181)
..+|+|.||+.+..| ..+..+||+...+++.+
T Consensus 199 ~~aSASaIR~~L~~~~~~~i~~~vP~~t~~il~~ 232 (388)
T PRK13670 199 EFASATAIRKALLEKDLDELKKFVPKATLELLKR 232 (388)
T ss_pred cChhHHHHHHHHHhCCHHHHHHhCCHHHHHHHHh
Confidence 369999999999766 46889999999999876
No 48
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=71.78 E-value=4.7 Score=31.10 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=16.9
Q ss_pred CCCCccChHHHHHHHHhCCC
Q 030204 155 LSIKYLTEDKVIDYIRESRL 174 (181)
Q Consensus 155 ~~~~~lvp~~V~~yI~~~~L 174 (181)
...+.-||++|++||++|++
T Consensus 93 dK~k~~LPddVI~YmrdNgI 112 (196)
T PRK15364 93 AKTKEEVPEDVIKYMRDNGI 112 (196)
T ss_pred CcccccCCHHHHHHHHHcCc
Confidence 44567899999999999986
No 49
>PRK13671 hypothetical protein; Provisional
Probab=71.06 E-value=3.4 Score=34.46 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=25.4
Q ss_pred cccHHHHHHHHHcCCCCCccChHHHHHHHH
Q 030204 141 QISSTRIRDCICRGLSIKYLTEDKVIDYIR 170 (181)
Q Consensus 141 ~ISST~IR~~l~~g~~~~~lvp~~V~~yI~ 170 (181)
..|+|.||+.+..|..+...||+...+.+.
T Consensus 195 ~aSAtaIR~~l~~~~~~~~~~p~~~~~~l~ 224 (298)
T PRK13671 195 YASATYLRKMIFENKDISKYSPMKFKKPPK 224 (298)
T ss_pred cccHHHHHHHHhccchHHHhCCHHHHHHHH
Confidence 589999999997777888999999876654
No 50
>PRK13660 hypothetical protein; Provisional
Probab=68.99 E-value=52 Score=25.46 Aligned_cols=136 Identities=10% Similarity=0.087 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCCCcc---hH
Q 030204 19 RINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPE---QV 95 (181)
Q Consensus 19 Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~---~~ 95 (181)
|-++.++.=++..+|-+.. ..+-...+.+++-.||++||+ .++..++=.-.... +|... .+
T Consensus 32 ~~~l~~~~e~G~~wfi~gg---alG~d~wAaEvvl~LK~~yp~--------lkL~~~~PF~~q~~-----~W~e~~q~~y 95 (182)
T PRK13660 32 KRKLIALLEEGLEWVIISG---QLGVELWAAEVVLELKEEYPD--------LKLAVITPFEEHGE-----NWNEANQEKL 95 (182)
T ss_pred HHHHHHHHHCCCCEEEECC---cchHHHHHHHHHHHHHhhCCC--------eEEEEEeCccchhh-----cCCHHHHHHH
Confidence 3344444334455554442 111234778999999999997 57777765554444 56653 34
Q ss_pred HHHhhcccEEEEcCCCCC--hhhhhhchHHHhhcCCc-EEEEcCCCCCcccHHHHHHHHHc----CCCCCccChHHHHHH
Q 030204 96 WTICRNFGVICIRREGQD--VEKIISDNEILDKNKGN-IKLVDELVPNQISSTRIRDCICR----GLSIKYLTEDKVIDY 168 (181)
Q Consensus 96 ~~l~~~~~~vv~~R~g~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ISST~IR~~l~~----g~~~~~lvp~~V~~y 168 (181)
..|++.++++++.-+.+- +..+......+-...+. +.+.+ .....=..-.+|.+.+. |..+..+-|+...+.
T Consensus 96 ~~i~~~aD~v~~vs~~~y~~p~q~~~rn~fmv~~sd~~i~~YD-~e~~Ggt~y~~~~A~k~~~~~~y~i~~I~~~~l~~~ 174 (182)
T PRK13660 96 ANILKQADFVKSISKRPYESPAQFRQYNQFMLEHTDGALLVYD-EENEGSPKYFYEAAKKKQEKEDYPLDLITFDDLQEI 174 (182)
T ss_pred HHHHHhCCEEEEecCCCCCChHHHHHHHHHHHHccCeEEEEEc-CCCCCChHHHHHHHHHhhhccCceEEEeCHHHHHHH
Confidence 578889999988766533 43332222222222333 44444 32222233456777776 777878888888776
Q ss_pred HHh
Q 030204 169 IRE 171 (181)
Q Consensus 169 I~~ 171 (181)
..+
T Consensus 175 ~~~ 177 (182)
T PRK13660 175 AEE 177 (182)
T ss_pred HHH
Confidence 543
No 51
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=67.16 E-value=16 Score=27.21 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhh
Q 030204 12 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 82 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~ 82 (181)
+.++.++|++|+ ++++..+.+.+... ...+.+.++ +.-|+ +++.|.|...
T Consensus 51 pi~~~~eR~~~v-~~~~~Vd~V~v~~~------~~~~~~~~~---~~~~d-----------~vv~G~d~~~ 100 (152)
T cd02173 51 PIMNLHERVLSV-LACRYVDEVVIGAP------YVITKELIE---HFKID-----------VVVHGKTEET 100 (152)
T ss_pred CCCCHHHHHHHH-HhcCCCCEEEECCC------CcchHHHHH---HhCCC-----------EEEECCCCcc
Confidence 588999999999 67887666555321 112334443 32244 7899988754
No 52
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=65.97 E-value=9.6 Score=28.17 Aligned_cols=18 Identities=17% Similarity=-0.044 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHhcCC
Q 030204 13 LISAEHRINLCNLACKSS 30 (181)
Q Consensus 13 ~~~~~~Rl~M~~~ai~~~ 30 (181)
..++++|++|++.++++.
T Consensus 49 i~s~e~R~~~l~~~l~~~ 66 (143)
T cd02164 49 IEPYEERIANLHEFLVDL 66 (143)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 569999999999999874
No 53
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=64.86 E-value=10 Score=27.90 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCCcccHHHHHHHHH
Q 030204 127 NKGNIKLVDELVPNQISSTRIRDCIC 152 (181)
Q Consensus 127 ~~~~~~~~~~~~~~~ISST~IR~~l~ 152 (181)
+.+.+.++.. ...||||.||+++.
T Consensus 120 ~g~~v~~~~~--~~~iSSs~Ir~ri~ 143 (144)
T TIGR02199 120 YGGQVVLLPF--VEGRSTTAIIEKIL 143 (144)
T ss_pred cCCEEEEEeC--CCCcCHHHHHHHHh
Confidence 4445555542 24799999999875
No 54
>PRK13671 hypothetical protein; Provisional
Probab=62.76 E-value=6.7 Score=32.75 Aligned_cols=26 Identities=12% Similarity=-0.042 Sum_probs=22.0
Q ss_pred CCCCCCCCCCC-C-CCCHHHHHHHHHHH
Q 030204 1 MSPVNDAYKKR-G-LISAEHRINLCNLA 26 (181)
Q Consensus 1 ~~P~~~~~~K~-~-~~~~~~Rl~M~~~a 26 (181)
++|++++|+|. . .++.++|++|+..+
T Consensus 34 ~vpSg~~~qrg~pa~~~~~~R~~ma~~~ 61 (298)
T PRK13671 34 VILSGKYTQRGEIAVASFEKRKKIALKY 61 (298)
T ss_pred EEECcCCCCCCCCCCCCHHHHHHHHHHc
Confidence 47999999997 3 45999999999876
No 55
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=59.43 E-value=11 Score=32.46 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHcCCCC-CccChHHHHHHHHhC
Q 030204 139 PNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRES 172 (181)
Q Consensus 139 ~~~ISST~IR~~l~~g~~~-~~lvp~~V~~yI~~~ 172 (181)
...||+|.+|+.|+.|..+ ..+.-|+|.+-|.+.
T Consensus 342 ~~~~SGt~lR~~Lr~G~~PP~~f~RPEV~~vl~k~ 376 (397)
T COG2046 342 HLHISGTKLREMLRAGVKPPEEFSRPEVADVLRKS 376 (397)
T ss_pred eEEEccHHHHHHHHcCCCCCcccccHHHHHHHHHh
Confidence 3689999999999999755 557779999988763
No 56
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=58.66 E-value=12 Score=28.68 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=30.2
Q ss_pred CCcccHHHHHHHHHcCCC-CCccChHHHHHHHHh
Q 030204 139 PNQISSTRIRDCICRGLS-IKYLTEDKVIDYIRE 171 (181)
Q Consensus 139 ~~~ISST~IR~~l~~g~~-~~~lvp~~V~~yI~~ 171 (181)
..+.|.|.||..+..|.. +..++|+.|.++|.+
T Consensus 126 ~~e~~~t~ir~~~~~~e~~w~~~~~~~v~~~i~e 159 (172)
T COG1056 126 RWEYSGTAIRRKMLGGEDVWEDLVPTFVAESITE 159 (172)
T ss_pred ccccccchHHHHhhcCccchhhccCchHhHHHHh
Confidence 469999999999999987 899999999999986
No 57
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=56.69 E-value=6.9 Score=32.77 Aligned_cols=16 Identities=44% Similarity=0.474 Sum_probs=13.8
Q ss_pred CcccHHHHHHHHHcCC
Q 030204 140 NQISSTRIRDCICRGL 155 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~ 155 (181)
..||||.||+++..|.
T Consensus 159 ~~iSSt~IR~~L~~gd 174 (304)
T COG0196 159 IRISSTAIRQALREGD 174 (304)
T ss_pred cEEchHHHHHHHhcCC
Confidence 4699999999998874
No 58
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]
Probab=52.64 E-value=9.4 Score=30.87 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=25.2
Q ss_pred CCcccHHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCCCCC
Q 030204 139 PNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNSND 180 (181)
Q Consensus 139 ~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~LY~~~~~ 180 (181)
.+++|.+.=+ ..-...--+.-|=..|++||++|+|+-+.+.
T Consensus 103 l~~ls~~L~~-~~G~~~lsR~~vvk~iw~YIke~nLqDP~nk 143 (240)
T KOG1946|consen 103 LIPLSPSLAR-FVGTSELSRTDVVKKIWAYIKEHNLQDPKNK 143 (240)
T ss_pred ccccCHHHHh-hcccccccHHHHHHHHHHHHHHhccCCcccc
Confidence 3566655433 2211122234577889999999999976653
No 59
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=50.83 E-value=6.8 Score=27.90 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=9.8
Q ss_pred CcccHHHHHHHH
Q 030204 140 NQISSTRIRDCI 151 (181)
Q Consensus 140 ~~ISST~IR~~l 151 (181)
..||||.||+.+
T Consensus 114 ~~vSST~Ir~~~ 125 (125)
T TIGR01518 114 EGVSTTKIKKEI 125 (125)
T ss_pred CCccHHHHHhhC
Confidence 469999999863
No 60
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=50.60 E-value=7.7 Score=25.34 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCCCCCCC
Q 030204 163 DKVIDYIRESRLYLNSN 179 (181)
Q Consensus 163 ~~V~~yI~~~~LY~~~~ 179 (181)
..+++||++|+|+.+.+
T Consensus 27 ~~lw~YIk~~~L~dp~~ 43 (76)
T PF02201_consen 27 KRLWQYIKENNLQDPKD 43 (76)
T ss_dssp HHHHHHHHHTTSBESSS
T ss_pred HHHHHHHHHhcCCCccc
Confidence 35899999999997654
No 61
>PF03433 EspA: EspA-like secreted protein ; InterPro: IPR005095 EspA is the prototypical member of this family. EspA, together with EspB, EspD and Tir are exported by a type III secretion system. These proteins are essential for attaching and effacing lesion formation. EspA is a structural protein and a major component of a large, transiently expressed, filamentous surface organelle which forms a direct link between the bacterium and the host cell [, ].; PDB: 1XOU_A.
Probab=49.63 E-value=5.5 Score=30.92 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=0.0
Q ss_pred CccChHHHHHHHHhCCC
Q 030204 158 KYLTEDKVIDYIRESRL 174 (181)
Q Consensus 158 ~~lvp~~V~~yI~~~~L 174 (181)
+.-||++|++|+++||+
T Consensus 96 k~~lp~dVi~Ym~~ngI 112 (188)
T PF03433_consen 96 KAPLPDDVIDYMRDNGI 112 (188)
T ss_dssp -----------------
T ss_pred cccCCHHHHHHHHHcCC
Confidence 34699999999999987
No 62
>PLN02388 phosphopantetheine adenylyltransferase
Probab=43.77 E-value=14 Score=28.50 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=12.6
Q ss_pred CCcccHHHHHHHHHc
Q 030204 139 PNQISSTRIRDCICR 153 (181)
Q Consensus 139 ~~~ISST~IR~~l~~ 153 (181)
...||||.||++..+
T Consensus 152 ~~kiSST~iR~~~~~ 166 (177)
T PLN02388 152 GNKLSSTTLRRLEAE 166 (177)
T ss_pred CCccCHHHHHHHHHH
Confidence 368999999998764
No 63
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=42.70 E-value=65 Score=24.69 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=57.1
Q ss_pred ccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCCCcc---hHHHHhhcccEEEEcCCC--CChhhhhh
Q 030204 45 YQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPE---QVWTICRNFGVICIRREG--QDVEKIIS 119 (181)
Q Consensus 45 ~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~---~~~~l~~~~~~vv~~R~g--~~~~~~~~ 119 (181)
..++.+++..+|+.||+ .++..++=.-.... +|... .+..|++.++.+++.-+. +....+..
T Consensus 55 D~waae~vl~LK~~yp~--------ikL~~v~Pf~~q~~-----~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~ 121 (177)
T PF06908_consen 55 DLWAAEVVLELKKEYPE--------IKLALVLPFENQGN-----NWNEANQERYQSILEQADFVVVVSERPYYSPGQLQK 121 (177)
T ss_dssp HHHHHHHHHTTTTT-TT---------EEEEEESSB-TTT-----TS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHH
T ss_pred HHHHHHHHHHHHhhhhh--------eEEEEEEcccchhh-----cCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHH
Confidence 44788999999999997 68888877644443 67652 346788999999887654 44433322
Q ss_pred chHHHhhcCCcE-EEEcCCCCCcccHHHHHHHHHc----CCCCCccChHHHHHHH
Q 030204 120 DNEILDKNKGNI-KLVDELVPNQISSTRIRDCICR----GLSIKYLTEDKVIDYI 169 (181)
Q Consensus 120 ~~~~~~~~~~~~-~~~~~~~~~~ISST~IR~~l~~----g~~~~~lvp~~V~~yI 169 (181)
....+-...+.+ .+.+ .....=....+|.+.+. +..+..+-|+...++.
T Consensus 122 rn~fMvdhsd~~iavyD-~~~~G~t~~~~~~a~~~~~~~~y~i~~I~~d~l~~~~ 175 (177)
T PF06908_consen 122 RNRFMVDHSDGLIAVYD-GEPEGGTKYTVRAAKKYQEQKGYPIDLIDPDDLQEIA 175 (177)
T ss_dssp HHHHHHHHSSEEEEE---TTT--TTHHHHHHHHHHHHHH---EEEE-HHHHHHHH
T ss_pred HhHHHHhCCCeEEEEEe-CCCCCcchHHHHHHHHHhhccCCeEEEecHHHHHHHh
Confidence 222222223433 3444 32222234456655543 4466666666666554
No 64
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=41.53 E-value=89 Score=27.46 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=33.5
Q ss_pred CCC-CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHh-cccccccCCCceEEEEEech
Q 030204 9 KKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGSD 79 (181)
Q Consensus 9 ~K~-~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~-~~~~~~~~~~~~~~fiiG~D 79 (181)
.|. ...+.++|++|++. ++-.+.+.+. .....+.+++..+-+++ |+ ++|.|.|
T Consensus 96 ~Kg~PV~~~eER~~~v~a-lk~VD~Vv~~------apy~~~~d~~~~li~~~~~D-----------~vVhGdD 150 (418)
T PLN02406 96 NKGPPVTPMHERMIMVSG-VKWVDEVIPD------APYAITEEFMNKLFNEYNID-----------YIIHGDD 150 (418)
T ss_pred cCCCCcCCHHHHHHHHHh-cCCCceEEeC------CccccchHHHHHHHHHhCCC-----------EEEECCC
Confidence 344 67899999999986 6554444332 12224556665554455 33 7899988
No 65
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=40.38 E-value=9.3 Score=33.09 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=0.0
Q ss_pred CcccHHHHHHHH--HcCCCCCccChHHHHHHH
Q 030204 140 NQISSTRIRDCI--CRGLSIKYLTEDKVIDYI 169 (181)
Q Consensus 140 ~~ISST~IR~~l--~~g~~~~~lvp~~V~~yI 169 (181)
...|+|.||+.+ ..+..+..+||+.+.+.+
T Consensus 200 ~~aSAtaIR~~l~~~~~~~~~~~vP~~~~~~l 231 (388)
T PF05636_consen 200 NFASATAIRKALSNNDLEEISNYVPKSSYEIL 231 (388)
T ss_dssp --------------------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 467999999999 455678899999999887
No 66
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=39.77 E-value=12 Score=23.48 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=29.9
Q ss_pred CcccHHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCCC
Q 030204 140 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 178 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~LY~~~ 178 (181)
.+.|.-++|+.+.....-..-.-.+|.+|+.++|-|...
T Consensus 25 ~E~~np~lR~~l~~~~~~~~~~~~~l~~~m~~kGwY~~~ 63 (64)
T PF07875_consen 25 LECANPELRQILQQILNECQQMQYELFNYMNQKGWYQPP 63 (64)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 577888999888765333344678999999999999764
No 67
>CHL00132 psaF photosystem I subunit III; Validated
Probab=39.19 E-value=36 Score=26.25 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=18.3
Q ss_pred eEEEEEechhhhhCCCCCCCCcc
Q 030204 71 KVMLVCGSDLLESFAIPGFWMPE 93 (181)
Q Consensus 71 ~~~fiiG~D~~~~l~~w~~W~~~ 93 (181)
+--++||.|=+..+-.-++|.++
T Consensus 82 ~~~lLCG~DGLPHLI~dG~~~Ha 104 (185)
T CHL00132 82 RSGLLCGTDGLPHLITDGRWSHA 104 (185)
T ss_pred ccccccCCCCCceeecCCCcccc
Confidence 34578999999888877788764
No 68
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=39.09 E-value=24 Score=28.13 Aligned_cols=31 Identities=13% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCcccHHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 030204 139 PNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 172 (181)
Q Consensus 139 ~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~ 172 (181)
--.|++|++|+++.. .-+.|++.+.+.|.++
T Consensus 138 SG~I~~sEL~~Al~~---~Gy~Lspq~~~~lv~k 168 (221)
T KOG0037|consen 138 SGTIDSSELRQALTQ---LGYRLSPQFYNLLVRK 168 (221)
T ss_pred CCcccHHHHHHHHHH---cCcCCCHHHHHHHHHH
Confidence 468999999999975 3478999999998875
No 69
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=38.94 E-value=27 Score=22.79 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=13.2
Q ss_pred ChHHHHHHHHhCCCCCCC
Q 030204 161 TEDKVIDYIRESRLYLNS 178 (181)
Q Consensus 161 vp~~V~~yI~~~~LY~~~ 178 (181)
+-..+++||++|+|..+.
T Consensus 25 v~~~lw~YIk~n~L~d~~ 42 (77)
T smart00151 25 IIKRLWEYIKEHNLQDPQ 42 (77)
T ss_pred HHHHHHHHHHHhcccCCc
Confidence 334678999999998644
No 70
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=35.05 E-value=91 Score=26.69 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhh
Q 030204 12 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 81 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~ 81 (181)
+.++.++|.+|+. +++..+.+.+... ...+.+.++.+ -|+ ++|.|.|..
T Consensus 241 Pi~~~~eR~~~v~-a~~~Vd~Vvi~~~------~~~~~~~i~~~---~~d-----------~vv~G~d~~ 289 (353)
T PTZ00308 241 PIMNLNERVLGVL-SCRYVDEVVIGAP------FDVTKEVIDSL---HIN-----------VVVGGKFSD 289 (353)
T ss_pred CCCCHHHHHHHHH-hhCCCCeEEEcCC------CCChHHHHHHh---CCC-----------EEEECCCCc
Confidence 5889999999994 8877666555321 12344444433 244 788998754
No 71
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=34.86 E-value=22 Score=30.46 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=28.4
Q ss_pred CcccHHHHHHHHHcCC--CCCccChHHHHHHHHhC
Q 030204 140 NQISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 172 (181)
Q Consensus 140 ~~ISST~IR~~l~~g~--~~~~lvp~~V~~yI~~~ 172 (181)
...|+|.||+.+..|. .+..+||+.+.+-|.++
T Consensus 203 ~~aSaT~IR~~i~~~~~~~~~~~vP~~t~~~l~~~ 237 (358)
T COG1323 203 EGASATAIRKAIFSGDLERIANMVPKETLEILSSK 237 (358)
T ss_pred cccchHHHHHHHhcchHHHHHhhCCHHHHHHHHhc
Confidence 5789999999998864 56789999999999875
No 72
>PF08483 IstB_IS21_ATP: IstB-like ATP binding N-terminal; InterPro: IPR013690 This bacterial domain is found to the N terminus of the IPR002611 from INTERPRO-like ATP binding domain in proteins which are putative transposase subunits [].
Probab=32.33 E-value=37 Score=18.22 Aligned_cols=13 Identities=31% Similarity=0.286 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHH
Q 030204 12 GLISAEHRINLCN 24 (181)
Q Consensus 12 ~~~~~~~Rl~M~~ 24 (181)
.-.||++|+.|+-
T Consensus 10 ~~LsFeERl~LLv 22 (30)
T PF08483_consen 10 QELSFEERLGLLV 22 (30)
T ss_pred hhcCHHHHHHHHH
Confidence 4679999999963
No 73
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=32.00 E-value=68 Score=24.19 Aligned_cols=51 Identities=25% Similarity=0.135 Sum_probs=26.0
Q ss_pred cccEEEEcCCCCChhhhhhchHHHhhcC-CcEEEEcC---CCCCcccHHHHHHHH
Q 030204 101 NFGVICIRREGQDVEKIISDNEILDKNK-GNIKLVDE---LVPNQISSTRIRDCI 151 (181)
Q Consensus 101 ~~~~vv~~R~g~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~ISST~IR~~l 151 (181)
.+..+|+.++.+.....+++...-.... -.++.++- .-..+||||.||...
T Consensus 92 ~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrge 146 (158)
T COG1019 92 DFEAIVVSPETYPGALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRGE 146 (158)
T ss_pred ceeEEEEccccchhHHHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhhc
Confidence 4677888888766432222211110011 13444431 112599999999653
No 74
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.26 E-value=1.8e+02 Score=22.79 Aligned_cols=121 Identities=11% Similarity=0.116 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHhcC-CCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCCCc
Q 030204 14 ISAEHRINLCNLACKS-SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMP 92 (181)
Q Consensus 14 ~~~~~Rl~M~~~ai~~-~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~ 92 (181)
.+.++=+++++.+++. ...++|. ...+ ...+.++.++++||+ .++|+=++.+-++ =.
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit-----~~tp-~a~~~I~~l~~~~~~------------~~vGAGTVl~~e~---a~- 70 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEIT-----LRTP-AALDAIRAVAAEVEE------------AIVGAGTILNAKQ---FE- 70 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe-----CCCc-cHHHHHHHHHHHCCC------------CEEeeEeCcCHHH---HH-
Confidence 4667778888888886 4444443 3333 367899999999863 5789988887662 21
Q ss_pred chHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCccChHHH---HHHH
Q 030204 93 EQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDYI 169 (181)
Q Consensus 93 ~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V---~~yI 169 (181)
+-+-...+|+|-+= .+.+ +.. .- ....+.++. --.+-|+|-+++..|-++-++-|-.+ .+||
T Consensus 71 ---~ai~aGA~FivSP~--~~~~-vi~---~a--~~~~i~~iP----G~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yi 135 (201)
T PRK06015 71 ---DAAKAGSRFIVSPG--TTQE-LLA---AA--NDSDVPLLP----GAATPSEVMALREEGYTVLKFFPAEQAGGAAFL 135 (201)
T ss_pred ---HHHHcCCCEEECCC--CCHH-HHH---HH--HHcCCCEeC----CCCCHHHHHHHHHCCCCEEEECCchhhCCHHHH
Confidence 33445778888873 2221 100 00 012333442 35788999999999988888888655 3777
Q ss_pred Hh
Q 030204 170 RE 171 (181)
Q Consensus 170 ~~ 171 (181)
+.
T Consensus 136 ka 137 (201)
T PRK06015 136 KA 137 (201)
T ss_pred HH
Confidence 64
No 75
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=30.34 E-value=66 Score=22.49 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHcCCCCCccChHHHHHHHHh
Q 030204 141 QISSTRIRDCICRGLSIKYLTEDKVIDYIRE 171 (181)
Q Consensus 141 ~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~ 171 (181)
+..-..||..++......--+|.+|++.+++
T Consensus 77 e~~~e~ik~~lk~d~Ca~~~~P~~V~d~L~~ 107 (110)
T PF10828_consen 77 EERRESIKTALKDDPCANTAVPDAVIDSLRR 107 (110)
T ss_pred HHHHHHHHHHHccCccccCCCCHHHHHHHHH
Confidence 3444566666666565667799999999865
No 76
>PLN00019 photosystem I reaction center subunit III; Provisional
Probab=27.64 E-value=44 Score=26.53 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=18.4
Q ss_pred eEEEEEechhhhhCCCCCCCCcc
Q 030204 71 KVMLVCGSDLLESFAIPGFWMPE 93 (181)
Q Consensus 71 ~~~fiiG~D~~~~l~~w~~W~~~ 93 (181)
+--++||.|=+..+-.-+.|.++
T Consensus 122 ~agLLCG~DGLPHLIvdG~~~Ha 144 (223)
T PLN00019 122 KAGLLCGADGLPHLIVDGDQAHL 144 (223)
T ss_pred hhccccCCCCCceeecCCCcccc
Confidence 45789999999888877788764
No 77
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=25.91 E-value=77 Score=27.89 Aligned_cols=28 Identities=29% Similarity=0.197 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKS 29 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~ 29 (181)
++|+++||.. ..+|.+.|.+++++|-+.
T Consensus 232 ~~P~~qNPtG-~tms~~rR~~Ll~lA~~~ 259 (459)
T COG1167 232 VTPTFQNPTG-VTMSLERRKALLALAEKY 259 (459)
T ss_pred ECCCCCCCCC-CccCHHHHHHHHHHHHHc
Confidence 5899999963 578999999999999443
No 78
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=25.63 E-value=45 Score=23.44 Aligned_cols=34 Identities=12% Similarity=0.318 Sum_probs=21.8
Q ss_pred EEEEEechhhhhCCCCCCCCcchHHHHhh--cccEEEEcCC
Q 030204 72 VMLVCGSDLLESFAIPGFWMPEQVWTICR--NFGVICIRRE 110 (181)
Q Consensus 72 ~~fiiG~D~~~~l~~w~~W~~~~~~~l~~--~~~~vv~~R~ 110 (181)
=+||+|.|.... .|-..+.++|-+ -.+++|=...
T Consensus 26 p~FlIGdD~~S~-----~WL~~~~~~L~~l~AvGlVVnV~t 61 (105)
T TIGR03765 26 PLFLIGDDPASR-----QWLQQNAAALKSLGAVGLVVNVET 61 (105)
T ss_pred ceEEEeCCHHHH-----HHHHHHHHHHHHCCCeEEEEecCC
Confidence 489999999877 575433355544 3466665543
No 79
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=25.35 E-value=6.2 Score=31.71 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=19.4
Q ss_pred ceEEEEEechhhhhCCCCCCC
Q 030204 70 LKVMLVCGSDLLESFAIPGFW 90 (181)
Q Consensus 70 ~~~~fiiG~D~~~~l~~w~~W 90 (181)
.-|.+|..+|.+.+||.|+.|
T Consensus 151 KaF~iil~tD~~vGfHS~~GW 171 (230)
T PF03040_consen 151 KAFLIILFTDLFVGFHSPHGW 171 (230)
T ss_pred HHHHHHHHHhhhhcCCCCccH
Confidence 458899999999999999999
No 80
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=24.37 E-value=2.5e+02 Score=22.04 Aligned_cols=121 Identities=10% Similarity=0.095 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHhcC-CCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCCCc
Q 030204 14 ISAEHRINLCNLACKS-SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMP 92 (181)
Q Consensus 14 ~~~~~Rl~M~~~ai~~-~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~ 92 (181)
.+.++=+++++.+++. .+.++|. ...+ ...+.++.++++||+ .++|+=++.+-+. =+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit-----~~t~-~a~~~i~~l~~~~~~------------~~vGAGTVl~~~~---a~- 74 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVT-----LRTP-VALDAIRLLRKEVPD------------ALIGAGTVLNPEQ---LR- 74 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-----CCCc-cHHHHHHHHHHHCCC------------CEEEEEeCCCHHH---HH-
Confidence 4567778888888886 4555553 2232 457899999999863 5688888877652 21
Q ss_pred chHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCccChHHH---HHHH
Q 030204 93 EQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDYI 169 (181)
Q Consensus 93 ~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V---~~yI 169 (181)
.-+-..++|+|-+ +.+.+ +.. .-. ...+.++. --.+.|+|.+++..|-++-++-|-.+ ..||
T Consensus 75 ---~a~~aGA~FivsP--~~~~~-v~~---~~~--~~~i~~iP----G~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yi 139 (204)
T TIGR01182 75 ---QAVDAGAQFIVSP--GLTPE-LAK---HAQ--DHGIPIIP----GVATPSEIMLALELGITALKLFPAEVSGGVKML 139 (204)
T ss_pred ---HHHHcCCCEEECC--CCCHH-HHH---HHH--HcCCcEEC----CCCCHHHHHHHHHCCCCEEEECCchhcCCHHHH
Confidence 2344567888876 33221 110 011 12334442 35788999999999988888888664 3677
Q ss_pred Hh
Q 030204 170 RE 171 (181)
Q Consensus 170 ~~ 171 (181)
+.
T Consensus 140 ka 141 (204)
T TIGR01182 140 KA 141 (204)
T ss_pred HH
Confidence 64
No 81
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.69 E-value=2e+02 Score=22.68 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHhcC-CCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCC
Q 030204 14 ISAEHRINLCNLACKS-SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFA 85 (181)
Q Consensus 14 ~~~~~Rl~M~~~ai~~-~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~ 85 (181)
.+.++=+++++.+++. .+.++|. ...+ +..+.++.++++||+ .++|+++..+-.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit-----l~~~-~~~~~I~~l~~~~p~------------~~IGAGTVl~~~ 78 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT-----LRTP-AALEAIRLIAKEVPE------------ALIGAGTVLNPE 78 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-----cCCc-cHHHHHHHHHHHCCC------------CEEEEeeccCHH
Confidence 4667778888888885 6666665 2223 578999999999975 467877776643
No 82
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=23.68 E-value=3.2e+02 Score=20.42 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=39.2
Q ss_pred hHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCC
Q 030204 94 QVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 155 (181)
Q Consensus 94 ~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~ 155 (181)
+++++++.++++++.=|..+.....-....+.+++...++++-..-.-+--..+=++++.|.
T Consensus 84 ~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 84 SLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGK 145 (178)
T ss_dssp SHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTS
T ss_pred ehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhcc
Confidence 46999999999999877544332222345566777777888633335666667777887764
No 83
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=23.48 E-value=1.5e+02 Score=22.02 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHHH
Q 030204 11 RGLISAEHRINLCNL 25 (181)
Q Consensus 11 ~~~~~~~~Rl~M~~~ 25 (181)
++..+.++|++|++.
T Consensus 48 ~pi~~~~qR~evl~s 62 (140)
T COG0615 48 KPIMPEEQRAEVLES 62 (140)
T ss_pred CCCCCHHHHHHHHHc
Confidence 367899999999873
No 84
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=22.62 E-value=53 Score=24.39 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=22.2
Q ss_pred eEEEEEechhhhhCCCCCCCCcchHHHHhhc--ccEEEEcCC
Q 030204 71 KVMLVCGSDLLESFAIPGFWMPEQVWTICRN--FGVICIRRE 110 (181)
Q Consensus 71 ~~~fiiG~D~~~~l~~w~~W~~~~~~~l~~~--~~~vv~~R~ 110 (181)
.=+||+|.|.+.. .|-..+.++|-++ +++||=...
T Consensus 63 ~plFlVGdD~~S~-----~WL~~~~~~L~~l~AvGlVVNV~t 99 (142)
T PF11072_consen 63 QPLFLVGDDPLSR-----QWLQQNAEELKQLGAVGLVVNVAT 99 (142)
T ss_pred CCEEEEcCCHHHH-----HHHHHHHHHHHHCCCeEEEEecCC
Confidence 4599999999877 5754333555543 466665443
No 85
>CHL00043 cemA envelope membrane protein
Probab=22.32 E-value=5.8 Score=32.44 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.3
Q ss_pred ceEEEEEechhhhhCCCCCCC
Q 030204 70 LKVMLVCGSDLLESFAIPGFW 90 (181)
Q Consensus 70 ~~~~fiiG~D~~~~l~~w~~W 90 (181)
.-|.+|...|.+.+||.||.|
T Consensus 182 KAF~IiL~TDlfvGFHSphGW 202 (261)
T CHL00043 182 KAFSILLLTDLCIGFHSPHGW 202 (261)
T ss_pred HHHHHHHHHHHHhcCCCchhH
Confidence 358899999999999999999
No 86
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=21.77 E-value=59 Score=22.09 Aligned_cols=25 Identities=12% Similarity=-0.102 Sum_probs=17.6
Q ss_pred CCCCCCCCCC--CCCCHHHHHHHHHHH
Q 030204 2 SPVNDAYKKR--GLISAEHRINLCNLA 26 (181)
Q Consensus 2 ~P~~~~~~K~--~~~~~~~Rl~M~~~a 26 (181)
+++.+++.+. ...+.++|++|++.+
T Consensus 32 ~i~~~~~~~~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 32 RIDDNPPVKVWQDPHELEERKESIEED 58 (105)
T ss_pred EEcCCCcccccCChHHHHHHHHHHHHH
Confidence 3455555543 477889999999976
No 87
>COG3443 Predicted periplasmic or secreted protein [General function prediction only]
Probab=21.72 E-value=68 Score=24.63 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=25.9
Q ss_pred hcccccccCCCceEEEEEechh----hhhCCCCCCCCc
Q 030204 59 LIEAGLISTESLKVMLVCGSDL----LESFAIPGFWMP 92 (181)
Q Consensus 59 ~~~~~~~~~~~~~~~fiiG~D~----~~~l~~w~~W~~ 92 (181)
|.++.|.+.+..+|-+-+|-|+ +..+.+|-.||.
T Consensus 141 FSDH~IaP~Ka~HfHif~G~dsqeaLl~EmeNWPTYYp 178 (193)
T COG3443 141 FSDHNIAPRKASHFHIFMGNDSQEALLDEMENWPTYYP 178 (193)
T ss_pred eccccccccccceeEEEecCchHHHHHHHHhcCCccCc
Confidence 3445566777778999999998 778887777876
No 88
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=20.41 E-value=7.3 Score=34.07 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=19.4
Q ss_pred ceEEEEEechhhhhCCCCCCC
Q 030204 70 LKVMLVCGSDLLESFAIPGFW 90 (181)
Q Consensus 70 ~~~~fiiG~D~~~~l~~w~~W 90 (181)
.-|.+|+..|.+.+||.||.|
T Consensus 343 KAF~IIL~TDlfVGFHSphGW 363 (422)
T PRK02507 343 KAFIIILFTDIFVGFHSPHGW 363 (422)
T ss_pred HHHHHHHHHHHHhcCCCchhH
Confidence 358899999999999999999
Done!