Query 030204
Match_columns 181
No_of_seqs 103 out of 1089
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nup_A FKSG76; NAD biosynthesi 100.0 4.6E-41 1.6E-45 270.9 17.9 178 1-178 46-236 (252)
2 1kqn_A Nmnat, nicotinamide mon 100.0 7.8E-41 2.7E-45 273.0 14.9 177 1-177 48-256 (279)
3 3h05_A Uncharacterized protein 100.0 2.7E-38 9.1E-43 242.4 9.6 137 1-179 33-174 (177)
4 1yum_A 'probable nicotinate-nu 100.0 2E-36 6.9E-41 242.5 16.1 163 1-178 57-233 (242)
5 2h29_A Probable nicotinate-nuc 100.0 1.6E-35 5.4E-40 228.9 11.1 151 1-176 36-188 (189)
6 1k4m_A NAMN adenylyltransferas 100.0 1E-34 3.6E-39 228.2 15.6 162 1-176 37-213 (213)
7 1kam_A Deamido-NAD(+), nicotin 100.0 5.4E-34 1.8E-38 221.1 14.6 151 1-176 41-193 (194)
8 2qtr_A Nicotinate (nicotinamid 100.0 5.7E-33 2E-37 214.0 15.3 151 1-176 36-188 (189)
9 3nd5_A Phosphopantetheine aden 99.9 1.3E-22 4.4E-27 154.3 6.3 128 2-177 35-163 (171)
10 3f3m_A Phosphopantetheine aden 99.8 2.2E-21 7.7E-26 147.1 6.2 122 1-172 35-158 (168)
11 1o6b_A Phosphopantetheine aden 99.8 3.5E-21 1.2E-25 145.7 4.4 129 1-178 34-163 (169)
12 1vlh_A Phosphopantetheine aden 99.8 2.2E-20 7.6E-25 142.2 4.1 124 1-173 44-168 (173)
13 1qjc_A Phosphopantetheine aden 99.8 9.3E-19 3.2E-23 130.6 6.5 123 1-172 33-156 (158)
14 1od6_A PPAT, phosphopantethein 99.7 5.3E-19 1.8E-23 132.3 4.8 123 1-172 32-157 (160)
15 3nbk_A Phosphopantetheine aden 99.7 1.6E-18 5.3E-23 132.1 6.1 123 1-172 53-175 (177)
16 1v47_A ATP sulfurylase; produc 99.7 5.3E-18 1.8E-22 141.7 8.0 143 1-172 187-348 (349)
17 1jhd_A Sulfate adenylyltransfe 99.7 1.7E-17 5.8E-22 140.6 8.1 142 1-172 226-390 (396)
18 1ej2_A Nicotinamide mononucleo 99.7 1.1E-17 3.7E-22 128.0 3.2 124 2-176 37-164 (181)
19 1f9a_A Hypothetical protein MJ 99.6 9E-17 3.1E-21 121.5 3.5 120 2-176 34-158 (168)
20 4f3r_A Phosphopantetheine aden 99.6 1.5E-15 5E-20 114.4 7.3 122 2-172 38-159 (162)
21 3k9w_A Phosphopantetheine aden 99.6 5.4E-15 1.9E-19 113.7 7.0 119 7-172 59-177 (187)
22 2qjo_A Bifunctional NMN adenyl 99.5 1.5E-14 5.2E-19 119.5 3.6 125 2-174 41-173 (341)
23 3nv7_A Phosphopantetheine aden 99.4 9.7E-15 3.3E-19 109.3 -4.0 120 5-171 37-156 (157)
24 2qjt_B Nicotinamide-nucleotide 99.1 8.1E-11 2.8E-15 97.6 6.1 125 3-172 42-176 (352)
25 2b7l_A Glycerol-3-phosphate cy 98.7 1.3E-08 4.5E-13 73.2 5.1 51 9-80 45-95 (132)
26 1coz_A Protein (glycerol-3-pho 98.5 8.6E-08 3E-12 68.5 4.4 81 11-152 47-127 (129)
27 1r6x_A ATP:sulfate adenylyltra 98.3 2.9E-06 9.8E-11 71.7 9.7 139 8-177 226-389 (395)
28 1g8f_A Sulfate adenylyltransfe 98.1 1.6E-05 5.5E-10 69.4 9.4 136 8-172 227-387 (511)
29 1lw7_A Transcriptional regulat 98.0 5.4E-07 1.9E-11 75.1 -0.7 45 1-46 34-88 (365)
30 2x0k_A Riboflavin biosynthesis 96.0 0.012 4.2E-07 48.6 6.2 101 12-155 70-175 (338)
31 3op1_A Macrolide-efflux protei 95.3 0.11 3.7E-06 42.3 9.4 100 12-155 77-178 (308)
32 1mrz_A Riboflavin kinase/FMN a 95.1 0.026 9E-07 45.7 5.0 96 12-155 52-148 (293)
33 3gmi_A UPF0348 protein MJ0951; 94.6 0.023 7.9E-07 47.3 3.5 32 141-172 226-259 (357)
34 3do8_A Phosphopantetheine aden 94.5 0.0069 2.3E-07 44.2 0.2 39 1-39 33-76 (148)
35 3glv_A Lipopolysaccharide core 93.9 0.05 1.7E-06 39.0 3.7 24 11-35 48-71 (143)
36 3hl4_A Choline-phosphate cytid 93.3 0.46 1.6E-05 37.1 8.4 24 11-35 124-147 (236)
37 2gks_A Bifunctional SAT/APS ki 85.8 3.3 0.00011 36.0 8.6 140 9-172 203-364 (546)
38 1m8p_A Sulfate adenylyltransfe 75.7 20 0.0007 31.2 10.0 141 9-172 230-388 (573)
39 3cr8_A Sulfate adenylyltranfer 75.1 11 0.00037 32.9 8.0 141 8-171 202-360 (552)
40 3elb_A Ethanolamine-phosphate 73.0 12 0.00041 30.6 7.4 22 12-34 54-75 (341)
41 1x6v_B Bifunctional 3'-phospho 56.8 10 0.00035 33.7 4.2 139 8-171 457-616 (630)
42 1xou_A ESPA; coiled coil, heli 43.8 4.9 0.00017 29.9 0.0 18 157-174 99-118 (192)
43 3elb_A Ethanolamine-phosphate 39.8 39 0.0013 27.5 4.8 90 12-155 249-338 (341)
44 3lab_A Putative KDPG (2-keto-3 37.6 47 0.0016 25.3 4.7 125 14-171 22-152 (217)
45 1v31_A Hypothetical protein RA 35.5 13 0.00043 24.5 1.0 22 158-179 29-50 (93)
46 1v32_A AT5G08430, hypothetical 33.7 18 0.00062 24.2 1.6 21 159-179 38-58 (101)
47 4e38_A Keto-hydroxyglutarate-a 31.9 36 0.0012 26.1 3.3 120 15-171 44-167 (232)
48 1uhr_A SWI/SNF related, matrix 25.7 39 0.0013 22.0 2.1 19 160-178 31-49 (93)
49 3tvz_A Putative uncharacterize 24.9 35 0.0012 24.8 2.0 31 47-85 14-44 (172)
50 2hl7_A Cytochrome C-type bioge 24.4 51 0.0018 21.2 2.5 22 146-172 51-72 (84)
51 2kw0_A CCMH protein; oxidoredu 23.1 70 0.0024 20.9 2.9 22 146-172 48-69 (90)
No 1
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=100.00 E-value=4.6e-41 Score=270.93 Aligned_cols=178 Identities=37% Similarity=0.701 Sum_probs=148.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcc---------cc----cccC
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIE---------AG----LIST 67 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~---------~~----~~~~ 67 (181)
|+|++.+|+|+.++++++|++|+++|++++++|.|++||+.+.+++||++||++++++|.. .+ +-++
T Consensus 46 ~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~v~~~E~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 125 (252)
T 1nup_A 46 ISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPA 125 (252)
T ss_dssp EEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHHHSSSCCCHHHHHHHHHHHHC--------------------
T ss_pred EeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceEeehHHhcCCCCCCHHHHHHHHHHHHhhccccccccccccccccCCC
Confidence 4689999999888999999999999999999999999999999999999999999999910 00 0000
Q ss_pred CCceEEEEEechhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHH
Q 030204 68 ESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRI 147 (181)
Q Consensus 68 ~~~~~~fiiG~D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~I 147 (181)
...+++||||+|++.+|++|++|++++.++|++.++|+|+.|+|++...+......+..+.++++++......+||||.|
T Consensus 126 ~~~~~~fiiGaD~l~~l~~p~~W~~~~~~~i~~~~~lvv~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~I 205 (252)
T 1nup_A 126 AVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYI 205 (252)
T ss_dssp CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEECCTTCCHHHHHHHCHHHHHTGGGEEEECCCSCCCCCHHHH
T ss_pred CCceEEEEEecchHhHCCCcCccCcchHHHHHhhCcEEEEECCCCChHHhhhhHHHHHhcCCCEEEEcCCCCCccCHHHH
Confidence 01489999999999999999999985568999999999999999986543222223444557888886444589999999
Q ss_pred HHHHHcCCCCCccChHHHHHHHHhCCCCCCC
Q 030204 148 RDCICRGLSIKYLTEDKVIDYIRESRLYLNS 178 (181)
Q Consensus 148 R~~l~~g~~~~~lvp~~V~~yI~~~~LY~~~ 178 (181)
|+.++.|+++++|||+.|.+||.+|+||+..
T Consensus 206 R~~~~~g~~i~~lvP~~V~~yI~~~~LY~~~ 236 (252)
T 1nup_A 206 RRALGQGQSVKYLIPDAVITYIKDHGLYTKG 236 (252)
T ss_dssp HHHHHTTCCCBTTBCHHHHHHHHHTTCSCC-
T ss_pred HHHHHcCCCchhcCCHHHHHHHHHcCCcCCC
Confidence 9999999999999999999999999999854
No 2
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=100.00 E-value=7.8e-41 Score=273.04 Aligned_cols=177 Identities=44% Similarity=0.768 Sum_probs=149.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccc-----------------
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAG----------------- 63 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~----------------- 63 (181)
|+|++.+|+|+.++++++|++|+++|+++.+++.|+++|+.+.+++||++||++++++|...+
T Consensus 48 f~P~~~~~~K~~l~s~~~R~~ml~~ai~~~~~~~v~~~E~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (279)
T 1kqn_A 48 ISPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKR 127 (279)
T ss_dssp EEECCGGGCCTTCCCHHHHHHHHHHHTTTCSSEEECCTGGGCSSCCCHHHHHHHHHHHHTC-------------------
T ss_pred EcCCCCCccccCCCCHHHHHHHHHHHhcCCCcEEEeccccccCCCCcHHHHHHHHHHHHhhccccccccccccccccccc
Confidence 468888999888899999999999999999999999999999999999999999999982000
Q ss_pred -c--------------ccCCCceEEEEEechhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcC
Q 030204 64 -L--------------ISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNK 128 (181)
Q Consensus 64 -~--------------~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~ 128 (181)
+ -++...+++||||+|++.+|++|++|++++.++|++.|+|+|+.|+|+...........+.++.
T Consensus 128 ~~~~~~~~~~~~~~~~~p~~~~~~~~i~GaD~l~~~~~p~~W~~~~~e~il~~~~lvv~~R~g~~~~~~~~~~~~l~~~~ 207 (279)
T 1kqn_A 128 KWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDVLWKHR 207 (279)
T ss_dssp -------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEEESCHHHHHHHHHTCHHHHHTG
T ss_pred ccccccccccccccccCCCCCccEEEEEehhhHhhCcCccccCcchHHHHHhhCcEEEEeCCCCChHhhhhhHHHHhhcC
Confidence 0 0111148999999999999999999998656999999999999999977544322233455566
Q ss_pred CcEEEEcCCCCCcccHHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCC
Q 030204 129 GNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 177 (181)
Q Consensus 129 ~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~yI~~~~LY~~ 177 (181)
+++++++.....+||||+||++++.|+++++|||++|.+||.+|+||..
T Consensus 208 ~~i~~v~~~~~~~ISST~IR~~l~~g~si~~lvP~~V~~YI~~~~LY~~ 256 (279)
T 1kqn_A 208 SNIHVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHNLYSS 256 (279)
T ss_dssp GGEEEEECCSCCCCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHHTCCSH
T ss_pred CcEEEECCCCCCccCHHHHHHHHHcCCChhhcCCHHHHHHHHHcCCcCC
Confidence 7899997444689999999999999999999999999999999999973
No 3
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.7e-38 Score=242.45 Aligned_cols=137 Identities=20% Similarity=0.217 Sum_probs=110.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCC--ceeechhhhc--CCC-ccchHHHHHHHHHHhcccccccCCCceEEEE
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSD--FIMVDPWEAN--QSG-YQRTLTVLSRVKNFLIEAGLISTESLKVMLV 75 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~--~~~v~~~E~~--~~~-~syT~~tl~~l~~~~~~~~~~~~~~~~~~fi 75 (181)
|+|++++|+|+..+++++|++|+++|+++++ ++.|+++|.+ +++ ++||+|||++|++.||+ .+|+||
T Consensus 33 ~~p~~~~~~k~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~~l~~~~~~syT~dTl~~l~~~~p~--------~~~~~i 104 (177)
T 3h05_A 33 LEPSIAHAWGKNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQALYQPGQSVTTYALLEKIQEIYPT--------ADITFV 104 (177)
T ss_dssp EEECC-------CCCHHHHHHHHHHHHHHHCCTTEEECCHHHHHC----CCCHHHHHHHHHHHSTT--------SEEEEE
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEehhhhcccCCCCcchHHHHHHHHHHhcC--------CCeEEE
Confidence 5789888888889999999999999999875 8999999987 666 99999999999999998 599999
Q ss_pred EechhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCC
Q 030204 76 CGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 155 (181)
Q Consensus 76 iG~D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~ 155 (181)
||+|++.+|++|+.| ++|++.|+++|++| ..+||||+||++++.|+
T Consensus 105 iG~D~l~~l~~W~~~-----~~l~~~~~~vv~~r-----------------------------~~~iSST~IR~~i~~g~ 150 (177)
T 3h05_A 105 IGPDNFFKFAKFYKA-----EEITERWTVMACPE-----------------------------KVKIRSTDIRNALIEGK 150 (177)
T ss_dssp ECHHHHHTGGGSTTH-----HHHHHHSEEEECCC-----------------------------SSCCCHHHHHHHHHHTC
T ss_pred EecchhhhcccchhH-----HHHHHhCCEEEEcC-----------------------------CCCCcHHHHHHHHHcCC
Confidence 999999999976666 99999999999986 24899999999999999
Q ss_pred CCCccChHHHHHHHHhCCCCCCCC
Q 030204 156 SIKYLTEDKVIDYIRESRLYLNSN 179 (181)
Q Consensus 156 ~~~~lvp~~V~~yI~~~~LY~~~~ 179 (181)
+++++||++|.+||.+|+||....
T Consensus 151 ~~~~lvp~~V~~yI~~~~LY~~~~ 174 (177)
T 3h05_A 151 DISTYTTPTVSELLLNEGLYRETL 174 (177)
T ss_dssp CCTTTSCHHHHHHHHC--------
T ss_pred ChhHhCCHHHHHHHHHcCCCCCcc
Confidence 999999999999999999998654
No 4
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=100.00 E-value=2e-36 Score=242.49 Aligned_cols=163 Identities=21% Similarity=0.351 Sum_probs=137.8
Q ss_pred CCCCCCCCCCC-CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHh-cccccccCCCceEEEEEec
Q 030204 1 MSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGS 78 (181)
Q Consensus 1 ~~P~~~~~~K~-~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~-~~~~~~~~~~~~~~fiiG~ 78 (181)
|+|+.++|+|+ ..+++++|++|+++|+++.+++.|+++|+++++++||++||+++++.| |+ .+++||+|+
T Consensus 57 v~~~~~~p~K~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~sytvdtl~~l~~~~~p~--------~~~~fI~G~ 128 (242)
T 1yum_A 57 LLPNARPPHRETPQVSAAQRLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAAD--------DQLFMLIGW 128 (242)
T ss_dssp EEECCCCGGGSCTTCCHHHHHHHHHHHHTTCTTEEECCGGGGSSSSCCHHHHHHHHHHHSCTT--------CEEEEEEEH
T ss_pred EEEcCCCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEeeeeecCCCCCCHHHHHHHHHHHhCCC--------CcEEEEEeh
Confidence 47899989985 589999999999999999999999999999999999999999999999 87 599999999
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhc-hHHHh-----------hcCCcEEEEcCCCCCcccHHH
Q 030204 79 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISD-NEILD-----------KNKGNIKLVDELVPNQISSTR 146 (181)
Q Consensus 79 D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~ISST~ 146 (181)
|++.+|++|+.| ++|++.|+++|++|+ +...+...+ ...+. ...+++.+++ .+..+||||.
T Consensus 129 D~l~~l~~W~~~-----~~i~~~~~~vv~~R~-~~~~~~~~e~~~~~~~~~~~~~~~L~~~~~~i~~~~-~~~~~ISST~ 201 (242)
T 1yum_A 129 DAFCGLPTWHRW-----EALLDHCHIVVLQRP-DADSEPPESLRDLLAARSVADPQALKGPGGQITFVW-QTPLAVSATQ 201 (242)
T ss_dssp HHHTTGGGSTTG-----GGSTTTCEEEEEECS-SSCCCCCGGGHHHHHHHBCSCGGGCCSSSCCEEEEE-CCCCSCCHHH
T ss_pred hHhhhhhhhcCH-----HHHHhhCcEEEEECC-CchhhhhHHHHHHHHHhhccchhhhccCCCeEEEec-CCCCcCcHHH
Confidence 999999976665 899999999999999 332211000 00011 1234788886 4568999999
Q ss_pred HHHHHHcCCCCCccChHHHHHHHHhCCCCCCC
Q 030204 147 IRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 178 (181)
Q Consensus 147 IR~~l~~g~~~~~lvp~~V~~yI~~~~LY~~~ 178 (181)
||+.++.|++++++||++|.+||++++||+.+
T Consensus 202 IR~~i~~g~~i~~lVP~~V~~yI~~~~LY~~~ 233 (242)
T 1yum_A 202 IRALLGAGRSVRFLVPDAVLNYIEAHHLYRAP 233 (242)
T ss_dssp HHHHHHTTCCCBTTBCHHHHHHHHHTTTTCCC
T ss_pred HHHHHHcCCChhHcCCHHHHHHHHHhCCcCCC
Confidence 99999999999999999999999999999864
No 5
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=100.00 E-value=1.6e-35 Score=228.87 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=134.7
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEec
Q 030204 1 MSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGS 78 (181)
Q Consensus 1 ~~P~~~~~~K~--~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~ 78 (181)
|+|+..+|+|. ..+++++|++|+++|+++.+++.|+++|+++++++||++||+++++.||+ .+++||+|+
T Consensus 36 ~~~~~~~~~k~~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~~~~~syt~dtl~~l~~~~p~--------~~~~~i~G~ 107 (189)
T 2h29_A 36 FLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKD--------SELYFVIGT 107 (189)
T ss_dssp EEECSBCTTSCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHHCSBCCHHHHHHHHHHHSTT--------EEEEEEEEH
T ss_pred EEECCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCEEEehHHhcCCCCCCHHHHHHHHHHHCCC--------CcEEEEEec
Confidence 36888999984 47899999999999999999999999999999999999999999999998 589999999
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCC
Q 030204 79 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIK 158 (181)
Q Consensus 79 D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~ 158 (181)
|++.+|+.|+.| ++|++.++++|++|+|+... ...++.+++ .+..+||||.||+.++.|++++
T Consensus 108 D~~~~~~~W~~~-----~~i~~~~~~~v~~R~~~~~~-----------~~~~i~~~~-~~~~~ISST~IR~~i~~g~~~~ 170 (189)
T 2h29_A 108 DQYNQLEKWYQI-----EYLKEMVTFVVVNRDKNSQN-----------VENAMIAIQ-IPRVDISSTMIRQRVSEGKSIQ 170 (189)
T ss_dssp HHHTTGGGSTTH-----HHHHHHCEEEEECCSSSCCC-----------CCTTSEEEC-CCCBCCCHHHHHHHHHTTCCCB
T ss_pred chhhhhccccCH-----HHHHhhCcEEEEECCCCccc-----------cCCcEEEEc-CCCCccCHHHHHHHHHcCCChh
Confidence 999999955444 89999999999999987532 134677776 4568999999999999999999
Q ss_pred ccChHHHHHHHHhCCCCC
Q 030204 159 YLTEDKVIDYIRESRLYL 176 (181)
Q Consensus 159 ~lvp~~V~~yI~~~~LY~ 176 (181)
++||++|.+||.+|+||+
T Consensus 171 ~lvP~~V~~yI~~~~LY~ 188 (189)
T 2h29_A 171 VLVPKSVENYIKGEGLYE 188 (189)
T ss_dssp TTBCHHHHHHHHHHTTTC
T ss_pred hcCCHHHHHHHHHhCCcc
Confidence 999999999999999996
No 6
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=100.00 E-value=1e-34 Score=228.21 Aligned_cols=162 Identities=24% Similarity=0.257 Sum_probs=136.8
Q ss_pred CCCCCCCCCCC-CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHh-cccccccCCCceEEEEEec
Q 030204 1 MSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGS 78 (181)
Q Consensus 1 ~~P~~~~~~K~-~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~-~~~~~~~~~~~~~~fiiG~ 78 (181)
|+|+.++|+|+ ..+++++|++|+++|+++.+++.|+++|.++.+++||++|++++++.| |+ .+++||+|+
T Consensus 37 ~~~~~~~~~k~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~s~t~~~l~~l~~~~~~~--------~~~~~i~G~ 108 (213)
T 1k4m_A 37 IIPNNVPPHRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPD--------VPLAFIIGQ 108 (213)
T ss_dssp EEECSSCTTSCCCSSCHHHHHHHHHHHHTTCTTEEECCHHHHCSSCCCHHHHHHHHHHHHCTT--------SCEEEEEEH
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHhccCCCEEEeHHHhcCCCCCcHHHHHHHHHHHhCCC--------CcEEEEEeh
Confidence 46888888886 689999999999999999999999999999999999999999999985 65 589999999
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhh---hhc---------hHHHh-hcCCcEEEEcCCCCCcccHH
Q 030204 79 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKI---ISD---------NEILD-KNKGNIKLVDELVPNQISST 145 (181)
Q Consensus 79 D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~---~~~---------~~~~~-~~~~~~~~~~~~~~~~ISST 145 (181)
|++.+|++|+.| ++|++.++++|++|+|+..... ... ...+. ...+++.+++ .+..+||||
T Consensus 109 D~~~~l~~W~~~-----~~i~~~~~~vv~~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~iSST 182 (213)
T 1k4m_A 109 DSLLTFPTWYEY-----ETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAE-TPWFNISAT 182 (213)
T ss_dssp HHHHHGGGSTTH-----HHHHHHCEEEEECCTTCCSSCSSHHHHHHHHHHBCSCTTHHHHSSSCCEEEEC-CCCCCCCHH
T ss_pred hhhhhhhccCCH-----HHHHhhCcEEEEECCCCchhhhhhHHHHHHhhhhcchhhhhhhccCCeEEEEe-CCcccCCHH
Confidence 999999965555 8999999999999999763211 000 00111 1235788886 557899999
Q ss_pred HHHHHHHcCCCCCccChHHHHHHHHhCCCCC
Q 030204 146 RIRDCICRGLSIKYLTEDKVIDYIRESRLYL 176 (181)
Q Consensus 146 ~IR~~l~~g~~~~~lvp~~V~~yI~~~~LY~ 176 (181)
.||+.++.|++++++||++|.+||.+|+||+
T Consensus 183 ~IR~~i~~g~~i~~lvP~~V~~yI~~~~LY~ 213 (213)
T 1k4m_A 183 IIRERLQNGESCEDLLPEPVLTYINQQGLYR 213 (213)
T ss_dssp HHHHHHHTTCCCTTTSCHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCCchhcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999995
No 7
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=100.00 E-value=5.4e-34 Score=221.11 Aligned_cols=151 Identities=24% Similarity=0.327 Sum_probs=129.3
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEec
Q 030204 1 MSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGS 78 (181)
Q Consensus 1 ~~P~~~~~~K~--~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~ 78 (181)
|+|+..+|+|. ..+++++|++|+++|+++.+++.|+++|+++.+++||++||++++..||+ .+++||+|+
T Consensus 41 ~~~~~~~~~k~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~~~t~~~l~~l~~~~p~--------~~~~~v~G~ 112 (194)
T 1kam_A 41 FMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPN--------DQLFFIIGA 112 (194)
T ss_dssp EEECCCC---------CHHHHHHHHHHHHTTCTTEEECCGGGSTTCCCSHHHHHHHHHHHSTT--------SEEEEEEET
T ss_pred EEECCCCCCcCCcCCCCHHHHHHHHHHHHcCCCCeEEeHHHhcCCCCCChHHHHHHHHHHCCC--------CcEEEEEec
Confidence 46788888884 57899999999999999999999999999999999999999999999998 589999999
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCC
Q 030204 79 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIK 158 (181)
Q Consensus 79 D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~ 158 (181)
|++.+|+ +|+++ ++|++.++++|++|+|.... ...++.+++ .+..+||||.||+.++.|++++
T Consensus 113 D~~~~~~---~W~~~--e~i~~~~~~~v~~R~g~~~~-----------l~~~i~~~~-~~~~~ISST~IR~~i~~g~~~~ 175 (194)
T 1kam_A 113 DMIEYLP---KWYKL--DELLNLIQFIGVKRPGFHVE-----------TPYPLLFAD-VPEFEVSSTMIRERFKSKKPTD 175 (194)
T ss_dssp TTTTTCC---CCHHH--HHHHHHSEEEEEECSSCCCC-----------CSSCCEEEE-CCCBCCCHHHHHHHHHHTCCCT
T ss_pred chhhhhc---cccCH--HHHHHhCcEEEEECCCcchh-----------cCCCEEEeC-CCCCCcCHHHHHHHHHcCCCch
Confidence 9999999 56654 89999999999999986521 124677776 4467999999999999999999
Q ss_pred ccChHHHHHHHHhCCCCC
Q 030204 159 YLTEDKVIDYIRESRLYL 176 (181)
Q Consensus 159 ~lvp~~V~~yI~~~~LY~ 176 (181)
++||++|.+||.+|+||+
T Consensus 176 ~lvP~~V~~yI~~~~LY~ 193 (194)
T 1kam_A 176 YLIPDKVKKYVEENGLYE 193 (194)
T ss_dssp TTSCHHHHHHHHHTTCSC
T ss_pred hhCCHHHHHHHHHcCCcc
Confidence 999999999999999997
No 8
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=100.00 E-value=5.7e-33 Score=213.99 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=133.4
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEec
Q 030204 1 MSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGS 78 (181)
Q Consensus 1 ~~P~~~~~~K~--~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~ 78 (181)
|+|+..+|+|. ..+++++|++|+++|+++.+++.++++|.++.+++||++|+++++..||+ .+++||+|+
T Consensus 36 ~~~~~~~~~k~~~~~~~~~~R~~ml~~~~~~~~~v~v~~~e~~~~~~~~~~~~l~~l~~~~p~--------~~~~~v~G~ 107 (189)
T 2qtr_A 36 FLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPD--------VQFHFIIGG 107 (189)
T ss_dssp EEECSSCTTCTTSCCCCHHHHHHHHHHHHTTCTTEEECCTGGGSCSCCCHHHHHHHHHHHCTT--------CEEEEEEEH
T ss_pred EEECCCCCCccCCCCCCHHHHHHHHHHHhCCCCCEEEehHHhcCCCCCCHHHHHHHHHHHCCC--------CCEEEEEeh
Confidence 46888889984 58999999999999999999999999999999999999999999999998 599999999
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCC
Q 030204 79 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIK 158 (181)
Q Consensus 79 D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~ 158 (181)
|++.+++.|+.| ++|++.++++|++|+|+... ...++.+++ .+..+||||.||+.++.|.+++
T Consensus 108 D~~~~~~~w~~~-----~~l~~~~~~~v~~r~~~~~~-----------~~~~v~~~~-~~~~~iSST~IR~~l~~g~~~~ 170 (189)
T 2qtr_A 108 DMVEYLPKWYNI-----EALLDLVTFVGVARPGYKLR-----------TPYPITTVE-IPEFAVSSSLLRERYKEKKTCK 170 (189)
T ss_dssp HHHHHGGGSTTH-----HHHTTTCEEEEECCTTCCCC-----------CSSCCEEEC-CCCCCCCHHHHHHHHHTTCCCT
T ss_pred hhhhhhhccCCH-----HHHHHhCCEEEEECCCCCcc-----------CCceEEEEc-CCCCccCHHHHHHHHHcCCCch
Confidence 999999955444 89999999999999987531 012566665 4456999999999999999999
Q ss_pred ccChHHHHHHHHhCCCCC
Q 030204 159 YLTEDKVIDYIRESRLYL 176 (181)
Q Consensus 159 ~lvp~~V~~yI~~~~LY~ 176 (181)
++||++|.+||++|+||.
T Consensus 171 ~lvP~~V~~yI~~~~lY~ 188 (189)
T 2qtr_A 171 YLLPEKVQVYIERNGLYE 188 (189)
T ss_dssp TTSCHHHHHHHHHTTGGG
T ss_pred hcCCHHHHHHHHHcCCcC
Confidence 999999999999999996
No 9
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.87 E-value=1.3e-22 Score=154.34 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=90.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceee-chhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 2 SPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV-DPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 2 ~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v-~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
+| +.+|+|+..++.++|++|+++|+++.+++.| +.+| +||+|++++++ + + +||+|.|+
T Consensus 35 ~v-~~~~~K~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e------~~tvd~~~~l~---~----------~-~~i~G~~~ 93 (171)
T 3nd5_A 35 GV-FINTSKQTLFTPEEKKYLIEEATKEMPNVRVIMQET------QLTVESAKSLG---A----------N-FLIRGIRN 93 (171)
T ss_dssp EE-EC------CCCHHHHHHHHHHHHTTCTTEEEEEECS------SCHHHHHHHHT---C----------C-EEEEEECS
T ss_pred EE-ecCCCCCCCCCHHHHHHHHHHHHccCCCEEEeeCCC------CcHHHHHHHCC---C----------C-EEEECCCc
Confidence 34 3467888899999999999999999999999 8887 48999998663 1 2 89999998
Q ss_pred hhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCcc
Q 030204 81 LESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYL 160 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~l 160 (181)
+.+| +..++.+.+ +|. +....+.++++..+...+||||.||+.++.|+++++|
T Consensus 94 ~~d~-----------~~e~~la~~---nr~-------------l~~~~etv~l~~~~~~~~ISST~IRe~~~~g~~i~~l 146 (171)
T 3nd5_A 94 VKDY-----------EYEKDIAKM---NQH-------------LAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDY 146 (171)
T ss_dssp HHHH-----------HHHHHHHHH---HHH-------------HCTTSEEEEEECCGGGTTCCHHHHHHHHHTTCCCGGG
T ss_pred hhhh-----------HHHHHHHHH---hhh-------------hcCCccEEEEeCCccccccchHHHHHHHHcCCChhHh
Confidence 8774 334444443 332 1111246777753334599999999999999999999
Q ss_pred ChHHHHHHHHhCCCCCC
Q 030204 161 TEDKVIDYIRESRLYLN 177 (181)
Q Consensus 161 vp~~V~~yI~~~~LY~~ 177 (181)
||+.|.+||.+++||..
T Consensus 147 VP~~V~~~i~~~~~y~~ 163 (171)
T 3nd5_A 147 LPPNIYHALKQKKNDWS 163 (171)
T ss_dssp SCHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHhhcccc
Confidence 99999999999999963
No 10
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.84 E-value=2.2e-21 Score=147.08 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=90.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
|+|+. +|+|+.+++.++|++|+++|+++.+++.|+++| + ||+||+++++. -+||+|.|+
T Consensus 35 v~v~~-~p~K~~~~~~~~R~~ml~~a~~~~~~v~v~~~e----~--~tvd~~~~l~~--------------~~~I~G~d~ 93 (168)
T 3f3m_A 35 VCVLK-NSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFS----G--LLVDYCEQVGA--------------KTIIRGLRA 93 (168)
T ss_dssp EEECC------CCSCHHHHHHHHHHHTTTCTTEEEEECC----S--CHHHHHHHHTC--------------CEEEEEECT
T ss_pred EEEcC-CCCCCCCCCHHHHHHhHHHHhcCCCCEEEEEcC----C--CHHHHHHHcCC--------------CEEEEcCCc
Confidence 35664 568888999999999999999999999999998 3 99999987632 279999998
Q ss_pred hhhCCCCCCCCcchHH-HHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCc-ccHHHHHHHHHcCCCCC
Q 030204 81 LESFAIPGFWMPEQVW-TICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQ-ISSTRIRDCICRGLSIK 158 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~-~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ISST~IR~~l~~g~~~~ 158 (181)
+.+|. | + ++.. +.|. +....+.++++. .+..+ ||||.||+.++.|++++
T Consensus 94 ~~d~~----~-----e~~~a~------~~r~-------------l~~~~e~v~l~~-~p~~~~ISST~IRe~~~~g~~i~ 144 (168)
T 3f3m_A 94 VSDFE----Y-----ELRLTS------MNKK-------------LNNEIETLYMMS-STNYSFISSSIVKEVAAYRADIS 144 (168)
T ss_dssp TCCHH----H-----HHHHHH------HHHH-------------HCTTSEEEEEEC-CTTTTTCCHHHHHHHHHTTCCCT
T ss_pred hhhhh----H-----HHHHhH------HhHh-------------hCCCCcEEEEeC-CcccccccHHHHHHHHHcCCChh
Confidence 87743 3 2 3332 1221 110124567775 44555 99999999999999999
Q ss_pred ccChHHHHHHHHhC
Q 030204 159 YLTEDKVIDYIRES 172 (181)
Q Consensus 159 ~lvp~~V~~yI~~~ 172 (181)
+|||+.|.+||+++
T Consensus 145 ~lvP~~V~~~i~~~ 158 (168)
T 3f3m_A 145 EFVPPYVEKALKKK 158 (168)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHh
Confidence 99999999999875
No 11
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.82 E-value=3.5e-21 Score=145.69 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=95.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
|+|+.+ |.|+.+++.++|++|+++|+++.+++.++++| +||++++++++ + + +||+|.|.
T Consensus 34 v~~~~~-p~k~~l~~~~~R~~ml~~a~~~~~~v~v~~~e------~~~~~~l~~l~---~----------~-~~i~G~d~ 92 (169)
T 1o6b_A 34 VCVLNN-SSKKPLFSVEERCELLREVTKDIPNITVETSQ------GLLIDYARRKN---A----------K-AILRGLRA 92 (169)
T ss_dssp EEECCC-CSSCCSSCHHHHHHHHHHHHTTCTTEEEEECS------SCHHHHHHHTT---C----------S-EEEEEECS
T ss_pred EEECCC-CccCCCCCHHHHHHHHHHHHhcCCCEEEcccc------hHHHHHHHHcC---C----------C-EEEEcCcc
Confidence 356754 77777899999999999999999999999887 58999886543 2 1 79999998
Q ss_pred hhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCC-CCcccHHHHHHHHHcCCCCCc
Q 030204 81 LESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELV-PNQISSTRIRDCICRGLSIKY 159 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ISST~IR~~l~~g~~~~~ 159 (181)
+.++. ... +++++.|.+.. ....+.++. .+ ..+||||.||+.++.|+++++
T Consensus 93 ~~~~~-----------~~~---~~~~~~r~~~~-------------~~~~i~~~~-~~~~~~ISST~IR~~l~~G~~~~~ 144 (169)
T 1o6b_A 93 VSDFE-----------YEM---QGTSVNRVLDE-------------SIETFFMMA-NNQYSFLSSSIVKEVARYDGSVSE 144 (169)
T ss_dssp GGGHH-----------HHH---HHHHHHHHHCT-------------TSEEEEEEC-CSTTTTCCHHHHHHHHHTTCCCTT
T ss_pred ccchH-----------HHH---HHHHHhccccC-------------CCCEEEEEC-CCCCCcCcHHHHHHHHHcCCChhH
Confidence 76643 111 12233443210 012344443 33 348999999999999999999
Q ss_pred cChHHHHHHHHhCCCCCCC
Q 030204 160 LTEDKVIDYIRESRLYLNS 178 (181)
Q Consensus 160 lvp~~V~~yI~~~~LY~~~ 178 (181)
+||++|.+||.+++||+.+
T Consensus 145 ~vP~~V~~yi~~~~ly~~~ 163 (169)
T 1o6b_A 145 FVPPEVELALQQKFRQGGS 163 (169)
T ss_dssp TSCHHHHHHHHHHHHSCSC
T ss_pred HCCHHHHHHHHHhhCcCCC
Confidence 9999999999999999864
No 12
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.80 E-value=2.2e-20 Score=142.21 Aligned_cols=124 Identities=16% Similarity=0.095 Sum_probs=93.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
|+|+.+++ |+..+++++|++|+++|+++.+++.|+++| + ||++|+++++. + +||.|
T Consensus 44 v~v~~~~~-kk~~~~~~~R~~ml~~a~~~~~~v~v~~~e----~--~tvd~l~~l~~-------------~-~~i~g--- 99 (173)
T 1vlh_A 44 VLVTENPR-KKCMFTLEERKKLIEEVLSDLDGVKVDVHH----G--LLVDYLKKHGI-------------K-VLVRG--- 99 (173)
T ss_dssp EEEECCTT-CCCSSCHHHHHHHHHHHTTTCTTEEEEEEC----S--CHHHHHHHHTC-------------C-EEEEE---
T ss_pred EEEeCCCC-CCCCCCHHHHHHHHHHHhcCCCCEEEecCc----c--hHHHHHHHhCC-------------C-eEEeC---
Confidence 35677655 458899999999999999999999999988 3 99999987742 2 46655
Q ss_pred hhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCC-cccHHHHHHHHHcCCCCCc
Q 030204 81 LESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPN-QISSTRIRDCICRGLSIKY 159 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ISST~IR~~l~~g~~~~~ 159 (181)
+.+|+.| ++++ ++++++|++... ...++++. .+.. .||||.||+.++.|+++++
T Consensus 100 ---l~~w~d~-----~~~~---~~~~~~r~~~~~-------------~~~i~l~~-~~~~~~iSST~IR~~i~~g~~i~~ 154 (173)
T 1vlh_A 100 ---LRAVTDY-----EYEL---QMALANKKLYSD-------------LETVFLIA-SEKFSFISSSLVKEVALYGGDVTE 154 (173)
T ss_dssp ---ECTTSCH-----HHHH---HHHHHHHHHSTT-------------CEEEEEEC-CGGGTTCCHHHHHHHHHTTCCCTT
T ss_pred ---CCcccch-----hhcc---chhhcCCCCCCC-------------CcEEEEeC-CCCCCceeHHHHHHHHHcCCChhH
Confidence 4544445 5655 667778875320 12455554 3333 4999999999999999999
Q ss_pred cChHHHHHHHHhCC
Q 030204 160 LTEDKVIDYIRESR 173 (181)
Q Consensus 160 lvp~~V~~yI~~~~ 173 (181)
+||++|.+||.++.
T Consensus 155 lvP~~V~~yI~~~~ 168 (173)
T 1vlh_A 155 WVPPEVARALNEKL 168 (173)
T ss_dssp TSCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999873
No 13
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.75 E-value=9.3e-19 Score=130.61 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=87.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
++|+.+ |+|+..+++++|++|+++|+.+.+.+.++++| +||+++|++++ + + +||+|.|.
T Consensus 33 v~~~~~-p~k~~~~~~~~R~~ml~~a~~~~~~v~v~~~~------~~~~~~l~~l~---~----------~-~~v~G~d~ 91 (158)
T 1qjc_A 33 LAIAAS-PSKKPMFTLEERVALAQQATAHLGNVEVVGFS------DLMANFARNQH---A----------T-VLIRGLRA 91 (158)
T ss_dssp EEEESC-CSSCCSSCHHHHHHHHHHHTTTCTTEEEEEEC------SCHHHHHHHTT---C----------C-EEEEECCT
T ss_pred EEECCC-CCCCCCCCHHHHHHHHHHHHhcCCCeEEcccc------hHHHHHHHHcC---C----------C-EEEEeccc
Confidence 357765 56767899999999999999999999999987 38888876542 2 2 89999875
Q ss_pred hhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCC-CcccHHHHHHHHHcCCCCCc
Q 030204 81 LESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVP-NQISSTRIRDCICRGLSIKY 159 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ISST~IR~~l~~g~~~~~ 159 (181)
+. .| +.+.+.+ ++.|.... ....+.++. .+. ..||||.||+.++.|+++++
T Consensus 92 ~~------~~-----~~~~~~~---~~~r~~~~-------------~~~~i~~~~-~~~~~~iSST~IR~~i~~g~~~~~ 143 (158)
T 1qjc_A 92 VA------DF-----EYEMQLA---HMNRHLMP-------------ELESVFLMP-SKEWSFISSSLVKEVARHQGDVTH 143 (158)
T ss_dssp TC------CH-----HHHHHHH---HHHHHHCT-------------TSEEEEECC-CGGGTTCCHHHHHHHHHTTCCCGG
T ss_pred hh------hh-----HHHHHHH---HhCccCCC-------------CCCEEEEEC-CCCCCccCHHHHHHHHHcCCChhH
Confidence 33 34 3333322 12332110 012334443 223 47999999999999999999
Q ss_pred cChHHHHHHHHhC
Q 030204 160 LTEDKVIDYIRES 172 (181)
Q Consensus 160 lvp~~V~~yI~~~ 172 (181)
+||++|.+||.+|
T Consensus 144 ~vP~~V~~yI~~~ 156 (158)
T 1qjc_A 144 FLPENVHQALMAK 156 (158)
T ss_dssp GSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHh
Confidence 9999999999886
No 14
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.75 E-value=5.3e-19 Score=132.28 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=85.4
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEec
Q 030204 1 MSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGS 78 (181)
Q Consensus 1 ~~P~~~~~~K~--~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~ 78 (181)
++|+ .+|+|+ ..+++++|++|+++|+++.+++.|+++| + ||++++++++ . + +||+|.
T Consensus 32 v~~~-~~p~k~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e----~--~~~~~l~~l~----~---------~-~~v~G~ 90 (160)
T 1od6_A 32 VAVL-ENPSKRGQYLFSAEERLAIIREATAHLANVEAATFS----G--LLVDFVRRVG----A---------Q-AIVKGL 90 (160)
T ss_dssp EEEE-CC-----CCSSCHHHHHHHHHHHTTTCTTEEEEEEC----S--CHHHHHHHTT----C---------S-EEEEEE
T ss_pred EEEc-CCCCCCCCCCCCHHHHHHHHHHHhcCCCCEEEEecC----c--hHHHHHHHcC----C---------C-EEEEeC
Confidence 3566 446776 5889999999999999999999999998 2 8999886543 1 1 799998
Q ss_pred hhhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCC-CCcccHHHHHHHHHcCCCC
Q 030204 79 DLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELV-PNQISSTRIRDCICRGLSI 157 (181)
Q Consensus 79 D~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ISST~IR~~l~~g~~~ 157 (181)
| +|+.| +.+.+.+ ++.|.+.. . -..+.++. .+ ..+||||.||+.++.|+++
T Consensus 91 d------~~~~~-----~~~~~~~---~~~r~~~~------------~-~~~i~~~~-~~~~~~ISST~IR~~l~~G~~~ 142 (160)
T 1od6_A 91 R------AVSDY-----EYELQMA---HLNRQLYP------------G-LETLFILA-ATRYSFVSSTMVKEIARYGGDV 142 (160)
T ss_dssp C------TTSCH-----HHHHHHH---HHHHHHTT------------T-CEEEEEEC-CGGGTTCCHHHHHHHHHTTCCC
T ss_pred C------cccch-----HHHHHHH---HhCcCCCC------------C-CCEEEEeC-CCCCCcccHHHHHHHHHcCCCh
Confidence 7 34344 3333221 23332110 0 12344443 33 3589999999999999999
Q ss_pred CccChHHHHHHHHhC
Q 030204 158 KYLTEDKVIDYIRES 172 (181)
Q Consensus 158 ~~lvp~~V~~yI~~~ 172 (181)
+++||++|.+||.+|
T Consensus 143 ~~~vP~~V~~~I~~~ 157 (160)
T 1od6_A 143 SKLVPPATLRALKAK 157 (160)
T ss_dssp TTTSCHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHH
Confidence 999999999999987
No 15
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.74 E-value=1.6e-18 Score=132.14 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=92.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
|+|+. +|+|+.+++.++|++|+++|+++.+++.|+++| .||+|+++.+. + -++|.|.++
T Consensus 53 v~v~~-np~K~~~~s~eeR~~mv~~a~~~~~~v~V~~~e------~l~vd~~~~~~-------------a-~~ivrGlr~ 111 (177)
T 3nbk_A 53 VAILV-NPAKTGMFDLDERIAMVKESTTHLPNLRVQVGH------GLVVDFVRSCG-------------M-TAIVKGLRT 111 (177)
T ss_dssp EEECC-CTTSCCSSCHHHHHHHHHHHCTTCTTEEEEECC------SCHHHHHHHTT-------------C-CEEEEEECT
T ss_pred EEEcC-CCCCCCCCCHHHHHHHHHHHhCCCCCEEEEecC------chHHHHHHHcC-------------C-CEEEECCCc
Confidence 35664 468888999999999999999999999999987 38888887532 1 278888887
Q ss_pred hhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCcc
Q 030204 81 LESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYL 160 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~l 160 (181)
+.+|+ ..++++.+ +|. + ...+.++++..+....||||.||+.++.|+++++|
T Consensus 112 ~~Dfe-----------ye~~~a~~---nr~-------------l-~~ietvfl~~~~~~~~ISST~IRe~~~~ggdv~~l 163 (177)
T 3nbk_A 112 GTDFE-----------YELQMAQM---NKH-------------I-AGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSEL 163 (177)
T ss_dssp TCCHH-----------HHHHHHHH---HHH-------------H-HCCEEEEEECCGGGSSCCHHHHHHHHHTTCCCGGG
T ss_pred hhHHH-----------HHHHHHHH---HHh-------------c-CCCceEEEeCCCcccccchHHHHHHHHcCCChhHh
Confidence 76643 33333332 221 2 12246666654445799999999999999999999
Q ss_pred ChHHHHHHHHhC
Q 030204 161 TEDKVIDYIRES 172 (181)
Q Consensus 161 vp~~V~~yI~~~ 172 (181)
||+.|.+||.++
T Consensus 164 VP~~V~~~l~~~ 175 (177)
T 3nbk_A 164 LPEPVNRRLRDR 175 (177)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999874
No 16
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=99.73 E-value=5.3e-18 Score=141.71 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=111.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCC-Cc----eeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEE
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSS-DF----IMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLV 75 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~-~~----~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fi 75 (181)
|+|+..+ +|.+.++.++|++|++++++++ |. +.+.+++.+..||+||+ +..+.++.++ +. +||
T Consensus 187 l~P~~g~-~K~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~m~~aGPreai--lhaiirkn~G--------~t-~fI 254 (349)
T 1v47_A 187 VHPILGA-KKPDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPMRYAGPKEAV--FHALVRKNFG--------AT-HFL 254 (349)
T ss_dssp EEEBCSC-CCTTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCCCCCTHHHHH--HHHHHHHHTT--------CS-EEE
T ss_pred EEECCCC-CCCCCCCHHHHHHHHHHHHhhcCCCcceEEEechHHhhcCCcHHHH--HHHHHHHcCC--------Cc-EEE
Confidence 3577655 6778899999999999999996 87 67788888899999875 6664444334 34 999
Q ss_pred Eechhh--hhCCCCCCCCcchHHHHhhcc-----cEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcC------CCCCcc
Q 030204 76 CGSDLL--ESFAIPGFWMPEQVWTICRNF-----GVICIRREGQDVEKIISDNEILDKNKGNIKLVDE------LVPNQI 142 (181)
Q Consensus 76 iG~D~~--~~l~~w~~W~~~~~~~l~~~~-----~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I 142 (181)
+|.|.+ .+|. .|+++ ++|++.+ .++++.|.++... .+.+..+.. ....+|
T Consensus 255 VGrDhag~~~~y---~~~~a--q~i~~~~~~l~i~~v~~~~~~Y~~~------------~~~~~~~~~~p~~~~~~~~~I 317 (349)
T 1v47_A 255 VGRDHAGVGDFY---DPYAA--HRIFDRLPPLGIEIVKVGAVFHCPL------------CGGIASERTCPEGHREKRTAI 317 (349)
T ss_dssp ECTTTTCSTTCS---CTTHH--HHGGGGSCCCSSEEEECCCEEEETT------------TTEEEETTTSCGGGGGGCEEC
T ss_pred ECcCCCCccccc---CcccH--HHHHHhhhhcCceEEeccccEEccc------------CCceEEccccCccCCCccccc
Confidence 999997 6665 78886 9999998 8999999876432 123333321 224799
Q ss_pred cHHHHHHHHHcCCCC-CccChHHHHHHHHhC
Q 030204 143 SSTRIRDCICRGLSI-KYLTEDKVIDYIRES 172 (181)
Q Consensus 143 SST~IR~~l~~g~~~-~~lvp~~V~~yI~~~ 172 (181)
|||+||++++.|+.+ ..++|++|.+||++.
T Consensus 318 SgT~iR~~L~~G~~pp~~f~~peV~~~I~~~ 348 (349)
T 1v47_A 318 SMTKVRALLREGKAPPSELVRPELLPILRRG 348 (349)
T ss_dssp CHHHHHHHHHTTCCCCTTTSCGGGHHHHHTT
T ss_pred CHHHHHHHHHCcCCCchhcCCHHHHHHHHhh
Confidence 999999999999854 799999999999874
No 17
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=99.70 E-value=1.7e-17 Score=140.64 Aligned_cols=142 Identities=12% Similarity=0.114 Sum_probs=109.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCC-Cc----eeechhhhcCCCccchHHHHHH-HHHHhcccccccCCCceEEE
Q 030204 1 MSPVNDAYKKRGLISAEHRINLCNLACKSS-DF----IMVDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVML 74 (181)
Q Consensus 1 ~~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~-~~----~~v~~~E~~~~~~syT~~tl~~-l~~~~~~~~~~~~~~~~~~f 74 (181)
|+|+.. |+|.+.++.+.|++|++++++++ |. +.+.+++.+..||+||+ +.. +++.| + +. +|
T Consensus 226 l~P~~g-~~K~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~~m~~aGPreai--lhaiirkn~-G--------~t-~f 292 (396)
T 1jhd_A 226 VHMLLG-KLKKGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFDMLYAGPREAV--LHAYFRQNM-G--------AT-HF 292 (396)
T ss_dssp EEEEEC-CCCTTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECCCCCCTHHHHH--HHHHHHHHT-T--------CS-EE
T ss_pred EEECCC-CCCCCCCCHHHHHHHHHHHHHhcCCCcceEEEechHHhhcCCchHHH--HHHHHHHcC-C--------Cc-EE
Confidence 367766 47878899999999999999984 76 78888998999999887 333 45555 3 45 99
Q ss_pred EEechhh--hhCCCCCCCCcchHHHHhhc--------ccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcC------CC
Q 030204 75 VCGSDLL--ESFAIPGFWMPEQVWTICRN--------FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE------LV 138 (181)
Q Consensus 75 iiG~D~~--~~l~~w~~W~~~~~~~l~~~--------~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 138 (181)
|+|.|.+ .+|. .|+++ ++|++. +.++++.|.++... .+.+..+.. ..
T Consensus 293 IVGrDhag~~~~y---~~~~a--q~il~~~~~~~~l~i~iv~~~~~~Y~~~------------~~~~~~~~~~p~~~~~~ 355 (396)
T 1jhd_A 293 IIGRDHAGVGDYY---GAFDA--QTIFDDEVPEGAMEIEIFRADHTAYSKK------------LNKIVMMRDVPDHTKED 355 (396)
T ss_dssp EECTTTTCCTTCS---CTTHH--HHHHHHTSCTTSCSCEEEECCCEEEETT------------TTEEEEGGGCTTCCGGG
T ss_pred EECCCCCCccccC---CcchH--HHHHHhcccccccceeEEecccceecCC------------CCeEEEccccCcccCCC
Confidence 9999997 6676 67776 899986 68899999876432 122333321 12
Q ss_pred CCcccHHHHHHHHHcCCC-CCccChHHHHHHHHhC
Q 030204 139 PNQISSTRIRDCICRGLS-IKYLTEDKVIDYIRES 172 (181)
Q Consensus 139 ~~~ISST~IR~~l~~g~~-~~~lvp~~V~~yI~~~ 172 (181)
..+||||+||++++.|+. +..++|++|.+||+++
T Consensus 356 ~~~ISgT~IR~~L~~G~~pP~~f~~peV~~~I~~~ 390 (396)
T 1jhd_A 356 FVLLSGTKVREMLGQGIAPPPEFSRPEVAKILMDY 390 (396)
T ss_dssp EECCCHHHHHHHHHTTCCCCTTTCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHCCCCCCcccCCHHHHHHHHHh
Confidence 368999999999999985 4789999999999884
No 18
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.68 E-value=1.1e-17 Score=128.01 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=92.5
Q ss_pred CCCCCCCCCC-CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 2 SPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 2 ~P~~~~~~K~-~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
+|++++|+|+ ..++.++|++|++.|+.+.+ + +. +.++|+|.|.
T Consensus 37 v~~~~~p~~~~~~~~~~~R~~~~~~a~~~~~-~--------------------------~~---------~~v~v~~~d~ 80 (181)
T 1ej2_A 37 IGSAQLSHSIRDPFTAGERVMMLTKALSENG-I--------------------------PA---------SRYYIIPVQD 80 (181)
T ss_dssp ECSTTCCSSSSSCSCHHHHHHHHHHHHHHTT-C--------------------------CG---------GGEEEEECCC
T ss_pred ECCCCCCcCCCCCCCHHHHHHHHHHHHhhCC-C--------------------------CC---------CcEEEEecCc
Confidence 4688888775 57899999999999998766 2 01 2488999998
Q ss_pred hhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCc---ccHHHHHHHHHcCCCC
Q 030204 81 LESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQ---ISSTRIRDCICRGLSI 157 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---ISST~IR~~l~~g~~~ 157 (181)
+.... .|.+. ++++...++++|+.|++. .. .... ..+.++. .+..+ ||||.||+.++.|+++
T Consensus 81 ~~~~~---~w~~~-~~~l~~~~~~~v~gr~~~--~~------~~~~--~~i~~~~-~~~~~~~~ISST~IR~~l~~G~~i 145 (181)
T 1ej2_A 81 IECNA---LWVGH-IKMLTPPFDRVYSGNPLV--QR------LFSE--DGYEVTA-PPLFYRDRYSGTEVRRRMLDDGDW 145 (181)
T ss_dssp CSCHH---HHHHH-HHHHSCCCSEEECCCHHH--HH------HHHH--TTCCEEC-CCCSSTTTSSHHHHHHHHHHTCCC
T ss_pred cCCHH---HHHHH-HHHHCCCCCEEEECCHHH--HH------HHHh--CCeEEEe-cCCCccCcCcHHHHHHHHHcCCCh
Confidence 87666 46442 467788899999998751 11 1111 1233443 23344 9999999999999999
Q ss_pred CccChHHHHHHHHhCCCCC
Q 030204 158 KYLTEDKVIDYIRESRLYL 176 (181)
Q Consensus 158 ~~lvp~~V~~yI~~~~LY~ 176 (181)
+++||++|.+||++++||.
T Consensus 146 ~~lvP~~V~~yI~~~~l~~ 164 (181)
T 1ej2_A 146 RSLLPESVVEVIDEINGVE 164 (181)
T ss_dssp GGGSCHHHHHHHHHTTHHH
T ss_pred hHhCCHHHHHHHHHcCChH
Confidence 9999999999999999984
No 19
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.63 E-value=9e-17 Score=121.46 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=81.9
Q ss_pred CCCCCCCCCC-CCCCHHHHHHHHHHHhcCCC-ceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEech
Q 030204 2 SPVNDAYKKR-GLISAEHRINLCNLACKSSD-FIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSD 79 (181)
Q Consensus 2 ~P~~~~~~K~-~~~~~~~Rl~M~~~ai~~~~-~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D 79 (181)
+|++++|+|+ ..++.++|++|+++|+++.+ ++.+ .+.|
T Consensus 34 v~~~~~p~~~~~~~~~~~R~~m~~~~~~~~~~~v~v----------------------------------------~~~d 73 (168)
T 1f9a_A 34 IGSAQKSHTLENPFTAGERILMITQSLKDYDLTYYP----------------------------------------IPIK 73 (168)
T ss_dssp ECSTTCCSSSSCCSCHHHHHHHHHHHHTTSSCEEEE----------------------------------------EECC
T ss_pred EcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCceEE----------------------------------------EeeC
Confidence 4788888775 57899999999999999877 3322 2223
Q ss_pred hhhhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCc---ccHHHHHHHHHcCCC
Q 030204 80 LLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQ---ISSTRIRDCICRGLS 156 (181)
Q Consensus 80 ~~~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---ISST~IR~~l~~g~~ 156 (181)
++.... .|++. ++++...++++++.|++. .. .+.. ..+.++. .+..+ ||||.||+.++.|++
T Consensus 74 ~l~~~~---~w~~~-~~~~~~~~~~~~~~~~~~--~~------~~~~--~~i~~~~-~~~~~~~~ISST~IR~~~~~g~~ 138 (168)
T 1f9a_A 74 DIEFNS---IWVSY-VESLTPPFDIVYSGNPLV--RV------LFEE--RGYEVKR-PEMFNRKEYSGTEIRRRMLNGEK 138 (168)
T ss_dssp CCSCGG---GHHHH-HHHHSCCCSEEECCCHHH--HH------HHHH--TTCEEEC-CCCCSTTTSSHHHHHHHHHHTCC
T ss_pred CcccHH---HHHHH-HHHhccCCCEEEECcHHH--HH------hhhh--cCcEEEe-CCccccCcccHHHHHHHHHcCCC
Confidence 332223 35432 355666677777665431 10 1111 2345554 34445 999999999999999
Q ss_pred CCccChHHHHHHHHhCCCCC
Q 030204 157 IKYLTEDKVIDYIRESRLYL 176 (181)
Q Consensus 157 ~~~lvp~~V~~yI~~~~LY~ 176 (181)
++++||+.|.+||.+|+||.
T Consensus 139 i~~lvP~~V~~yI~~~~l~~ 158 (168)
T 1f9a_A 139 WEHLVPKAVVDVIKEIKGVE 158 (168)
T ss_dssp CGGGSCHHHHHHHHHHTHHH
T ss_pred hhHcCCHHHHHHHHHcCChH
Confidence 99999999999999999873
No 20
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.60 E-value=1.5e-15 Score=114.40 Aligned_cols=122 Identities=15% Similarity=0.195 Sum_probs=81.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhh
Q 030204 2 SPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 81 (181)
Q Consensus 2 ~P~~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~ 81 (181)
+|+ .+|+|+.+++.++|++|+++++++ +++.|+.++ + +++++++. ..++ +||.|.|++
T Consensus 38 ~v~-~~~~K~~~~~~~~R~~m~~~~~~~-~~v~V~~~~----~--l~~~~~~~---~~~~-----------~~v~G~r~~ 95 (162)
T 4f3r_A 38 ACA-PTSRKDPHLKLEERVNLIADVLTD-ERVEVLPLT----G--LLVDFAKT---HQAN-----------FILRGLRAV 95 (162)
T ss_dssp EEC-CC------CCHHHHHHHHHHHCCC-TTEEEEECC----S--CHHHHHHH---TTCC-----------EEEEEECSH
T ss_pred EEe-cCCccCCCCCHHHHHHHHHHhhCC-CCEEEEecc----c--hHHHHHHH---cCCC-----------EEEECCCch
Confidence 355 457887899999999999999999 999999886 3 56666543 2222 899999999
Q ss_pred hhCCCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCccC
Q 030204 82 ESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLT 161 (181)
Q Consensus 82 ~~l~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~lv 161 (181)
.+|. + . .++.. ++|. +....+.+++...+....||||.||+.++.|+++++||
T Consensus 96 ~Df~----~-e---~~~a~------~nr~-------------l~~~ietv~l~~~~~~~~ISST~IRe~~~~g~~i~~~V 148 (162)
T 4f3r_A 96 SDFD----Y-E---FQLAH------MNYQ-------------LSPEIETIFLPAREGYSYVSGTMVREIVTLGGDVSPFV 148 (162)
T ss_dssp HHHH----H-H---HHHHH------HHHH-------------HCTTCEEEEEECCGGGSSCCHHHHHHHHHTTCCCTTTS
T ss_pred hhhh----h-H---HHHHH------HHHH-------------hCCCccEEEEECCcccccccHHHHHHHHHcCCChhHhC
Confidence 9876 2 0 12221 1111 11112355665533346999999999999999999999
Q ss_pred hHHHHHHHHhC
Q 030204 162 EDKVIDYIRES 172 (181)
Q Consensus 162 p~~V~~yI~~~ 172 (181)
|+.|.+||.++
T Consensus 149 P~~V~~~l~~~ 159 (162)
T 4f3r_A 149 PPLVARHLQKR 159 (162)
T ss_dssp CHHHHHHC---
T ss_pred CHHHHHHHHHH
Confidence 99999999875
No 21
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.55 E-value=5.4e-15 Score=113.66 Aligned_cols=119 Identities=15% Similarity=0.098 Sum_probs=85.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCC
Q 030204 7 AYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAI 86 (181)
Q Consensus 7 ~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~ 86 (181)
+|.|+.+++.++|++|++.++++.+++.|.+++ .+++++++.+ .+ .++|+|.|++.+|.
T Consensus 59 ~p~K~~l~s~eeR~~ml~~~~~~v~~v~v~~f~------~~~~d~l~~l---~~-----------~~iv~G~r~~~Df~- 117 (187)
T 3k9w_A 59 SRAKKPFFSLEERLKIANEVLGHYPNVKVMGFT------GLLKDFVRAN---DA-----------RVIVRGLRAVSDFE- 117 (187)
T ss_dssp CGGGCCSSCHHHHHHHHHHHHTTCTTEEEEEES------SCHHHHHHHT---TC-----------SEEEEECCTTSCHH-
T ss_pred CCccCCCCCHHHHHHHHHHHhccCCcEEEEech------hhHHHHHHHc---CC-----------CEEEECCCcccccc-
Confidence 467778999999999999999999999998875 3677776543 22 28999999887765
Q ss_pred CCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCccChHHHH
Q 030204 87 PGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVI 166 (181)
Q Consensus 87 w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V~ 166 (181)
+ +.-+. .++|. +......+++...+....||||.||+.++.|+++++|||+.|.
T Consensus 118 ---~-----E~~la-----~~nr~-------------l~~~ietv~l~~~~~~~~ISST~IRe~~~~g~~i~~lVP~~V~ 171 (187)
T 3k9w_A 118 ---Y-----EFQMA-----GMNRY-------------LLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVE 171 (187)
T ss_dssp ---H-----HHHHH-----HHHHH-------------HCTTCEEEEECCCGGGTTCCHHHHHHHHHTTCCCTTTSCHHHH
T ss_pred ---h-----HHHHH-----HHHHH-------------hCCCCcEEEEecccccccccHHHHHHHHHcCCChhHHCCHHHH
Confidence 3 32111 11221 1111123444432224799999999999999999999999999
Q ss_pred HHHHhC
Q 030204 167 DYIRES 172 (181)
Q Consensus 167 ~yI~~~ 172 (181)
+||.++
T Consensus 172 ~~i~~k 177 (187)
T 3k9w_A 172 KWLTEK 177 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 22
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.47 E-value=1.5e-14 Score=119.52 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=88.0
Q ss_pred CCCCCCCCCC-CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 2 SPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 2 ~P~~~~~~K~-~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
+|++++|+|+ ..+++++|++|+++++.+.+ . . +++|++|.|.
T Consensus 41 v~~~~~p~~~~~~~~~~~R~~m~~~~~~~~~---------------------------~-~---------~~~~i~~~d~ 83 (341)
T 2qjo_A 41 LGSHRVAADTRNPWRSPERMAMIEACLSPQI---------------------------L-K---------RVHFLTVRDW 83 (341)
T ss_dssp EEEETCCCCSSSCSCHHHHHHHHHTTSCHHH---------------------------H-T---------TEEEEEEECC
T ss_pred ECCcccCCCCCCCCCHHHHHHHHHHHhhhcc---------------------------C-C---------eEEEEECCCC
Confidence 5667666654 68999999999999876543 1 1 5899999999
Q ss_pred hhhCCCCCCCCcchHHHHhhc-----ccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCC
Q 030204 81 LESFAIPGFWMPEQVWTICRN-----FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 155 (181)
Q Consensus 81 ~~~l~~w~~W~~~~~~~l~~~-----~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~ 155 (181)
+.++.+|+.| .+++++. ++++++.++...... ..+....+..+..+...+||||.||+.++.|.
T Consensus 84 ~~~~~~w~~~----~~~l~~~l~r~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~iSST~IR~~l~~g~ 152 (341)
T 2qjo_A 84 LYSDNLWLAA----VQQQVLKITGGSNSVVVLGHRKDASSY-------YLNLFPQWDYLETGHYPDFSSTAIRGAYFEGK 152 (341)
T ss_dssp TTCHHHHHHH----HHHHHHHHHTTCSCEEEEECCCSGGGG-------GGGSCTTSEEEECCCCTTCCHHHHHHHHHHTC
T ss_pred cCChHHHHHH----HHHHhHHhcCCCceEEEEcCCCCCChH-------HHHhccccceeecccCCCCCcHHHHHHHHcCC
Confidence 8888854444 2456665 678888655422111 11112234444322257999999999999999
Q ss_pred CCCc--cChHHHHHHHHhCCC
Q 030204 156 SIKY--LTEDKVIDYIRESRL 174 (181)
Q Consensus 156 ~~~~--lvp~~V~~yI~~~~L 174 (181)
++++ +||++|.+||.++++
T Consensus 153 ~~~~~~lvp~~v~~~i~~~~~ 173 (341)
T 2qjo_A 153 EGDYLDKVPPAIADYLQTFQK 173 (341)
T ss_dssp GGGTTTTSCHHHHHHHHHHTT
T ss_pred CcchhhhCCHHHHHHHHHhcc
Confidence 8777 999999999998765
No 23
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.36 E-value=9.7e-15 Score=109.33 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=82.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhC
Q 030204 5 NDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESF 84 (181)
Q Consensus 5 ~~~~~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l 84 (181)
+.+|+|+..++.++|++|++.|+++.+++.|+.++ + .++ ..+++..|+ ++|.|.+++.+|
T Consensus 37 ~~~~~K~~~~~~~eR~~ml~~a~~~~~~v~v~~~~----~--l~~---~~~~~~~~~-----------~ivrG~r~~~D~ 96 (157)
T 3nv7_A 37 AHSSAKNPMFSLDERLKMIQLATKSFKNVECVAFE----G--LLA---YLAKEYHCK-----------VLVRGLRVVSDF 96 (157)
T ss_dssp ECCGGGCCSSCHHHHHHHHHHHHTTSTTEEEEEEC----S--CHH---HHHHHTTCC-----------CBCCCCSCCCCH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHhcCCCcEEEEecC----c--hHH---HHHHHcCCC-----------EEEECCcccchh
Confidence 45678888999999999999999999999998775 2 233 444454444 799998887775
Q ss_pred CCCCCCCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCccChHH
Q 030204 85 AIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDK 164 (181)
Q Consensus 85 ~~w~~W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~lvp~~ 164 (181)
. | +.-+ ...+|. +...-+.+++........||||.||+.+..|++++++||+.
T Consensus 97 ~----y-----e~~~-----a~~n~~-------------l~~~ietv~l~~~~~~~~iSSt~vRe~~~~ggdv~~~VP~~ 149 (157)
T 3nv7_A 97 E----Y-----ELQM-----GYANKS-------------LNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKE 149 (157)
T ss_dssp H----H-----HHHH-----HHHHHH-------------SSCCCCCCCCCCCHHHHTCCHHHHHHHHHTTCCCTTTSCTT
T ss_pred h----h-----hHHH-----HHHHHH-------------hCCCceEEEEcCCcccceeeHHHHHHHHHcCCChHHhCCHH
Confidence 4 3 2111 111111 10011233333211225899999999999999999999999
Q ss_pred HHHHHHh
Q 030204 165 VIDYIRE 171 (181)
Q Consensus 165 V~~yI~~ 171 (181)
|.++|.+
T Consensus 150 V~~~l~~ 156 (157)
T 3nv7_A 150 IYPLISK 156 (157)
T ss_dssp THHHHCC
T ss_pred HHHHHhh
Confidence 9999864
No 24
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.10 E-value=8.1e-11 Score=97.60 Aligned_cols=125 Identities=7% Similarity=0.000 Sum_probs=81.0
Q ss_pred CCCCCCCC-CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhh
Q 030204 3 PVNDAYKK-RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 81 (181)
Q Consensus 3 P~~~~~~K-~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~ 81 (181)
++++++++ +..+++++|++|+++|+++.+ +|+ .+++++.|.|.+
T Consensus 42 ~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~---------------------------~~~--------~~~~~~~~~d~~ 86 (352)
T 2qjt_B 42 GSCFNTPNIKNPFSFEQRKQMIESDLQVAG---------------------------IDL--------DTVVIEPLADYF 86 (352)
T ss_dssp EEESCCCCSSSCSCHHHHHHHHHHHHHHTT---------------------------CCG--------GGEEEEEEECCT
T ss_pred CCCCCCcccCCCCCHHHHHHHHHHHhcccc---------------------------Ccc--------ceEEEEEcCCCc
Confidence 34444444 468899999999999997643 244 368899999987
Q ss_pred hhCCCCCCCCcchHHHHhhc----ccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHc-C--
Q 030204 82 ESFAIPGFWMPEQVWTICRN----FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICR-G-- 154 (181)
Q Consensus 82 ~~l~~w~~W~~~~~~~l~~~----~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~-g-- 154 (181)
.... .|.+.--+.+.+. ..++++.|........ + .....+..++.....+||||.||+.+.. |
T Consensus 87 ~~~~---~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~------~-~~~~~~~~~~~~~~~~iSST~IR~~~~~~g~~ 156 (352)
T 2qjt_B 87 YQEQ---KWQDELRKNVYKHAKNNNSIAIVGHIKDSSSYY------I-RSFPEWDYIGVDNYKNFNATEFRQKFYNGIIS 156 (352)
T ss_dssp TCHH---HHHHHHHHHHTTTSCSSCCEEECCBSSSSHHHH------H-HHCTTSEECCBCCTTCCCHHHHHHHHHTTCCC
T ss_pred CChH---HHHHHHHHHHHHhcccCCeEEEEcCCCCcchhh------h-hcCCccceeccCCCCCCCchHHHHHHhccCcc
Confidence 7776 4544211333332 4666666654221111 1 1112233443223467999999999997 8
Q ss_pred CC-CCccChH-HHHHHHHhC
Q 030204 155 LS-IKYLTED-KVIDYIRES 172 (181)
Q Consensus 155 ~~-~~~lvp~-~V~~yI~~~ 172 (181)
.+ +++|||+ .|.+||.+.
T Consensus 157 ~~~i~~lvP~~~va~~I~~w 176 (352)
T 2qjt_B 157 KQYMCSNDPKLGTYNFLTKF 176 (352)
T ss_dssp GGGCSCSSTTSHHHHHHHHH
T ss_pred cchhhhcCChHHHHHHHHHH
Confidence 78 9999999 999999864
No 25
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=98.71 E-value=1.3e-08 Score=73.21 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechh
Q 030204 9 KKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 80 (181)
Q Consensus 9 ~K~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 80 (181)
.|..+++.++|++|++ ++...+.+.+ +.+|+ ++++.+++..++ ++++|+|.
T Consensus 45 ~~~~l~~~~eR~~~l~-~~~~~d~v~~--------~~~~~-~~~~~~~~~~~~-----------~iv~G~D~ 95 (132)
T 2b7l_A 45 HKKSYYDYEQRKMMLE-SIRYVDLVIP--------EKGWG-QKEDDVEKFDVD-----------VFVMGHDW 95 (132)
T ss_dssp TCCCSSCHHHHHHHHH-TBTTCCEEEE--------ECCGG-GHHHHHHHTTCC-----------EEEECGGG
T ss_pred CCCCCCCHHHHHHHHH-hcCCCCEEEE--------CCChH-HHHHHHHHcCCC-----------EEEECCCC
Confidence 4445789999999999 7776676655 34555 677777666554 58999997
No 26
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=98.51 E-value=8.6e-08 Score=68.54 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCC
Q 030204 11 RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 90 (181)
Q Consensus 11 ~~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W 90 (181)
...++.++|++|++ ++...+.+.+ +.+|+ ++++.+++..+ + ++++|+|.- +.+
T Consensus 47 ~~l~~~~eR~~~l~-~~~~~d~v~~--------~~~~~-~~~~~l~~~~~----------~-~iv~G~D~~------~~~ 99 (129)
T 1coz_A 47 KAYHSYEHRKLILE-TIRYVDEVIP--------EKNWE-QKKQDIIDHNI----------D-VFVMGDDWE------GKF 99 (129)
T ss_dssp CCSSCHHHHHHHHT-TBTTCCEEEE--------ECCST-THHHHHHHTTC----------S-EEEEEGGGT------TTT
T ss_pred CCCCCHHHHHHHHH-hcCCCCEEEe--------CCCHH-HHHHHHHHhCC----------c-EEEECCCCC------CcH
Confidence 46889999999999 6776666543 23444 56666655432 3 789999952 123
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHH
Q 030204 91 MPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCIC 152 (181)
Q Consensus 91 ~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~ 152 (181)
+.|.+.+.+++++| ...||||.||+.++
T Consensus 100 -----~~L~~~~~v~~~~~-----------------------------~~~iSST~IR~~i~ 127 (129)
T 1coz_A 100 -----DFLKDQCEVVYLPR-----------------------------TEGISTTKIKEEIA 127 (129)
T ss_dssp -----GGGTTTSEEEEECC-----------------------------CTTCCHHHHHHTC-
T ss_pred -----HHHHhCCeEEEcCC-----------------------------CCCcCHHHHHHHHH
Confidence 44444455555553 23699999999764
No 27
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=98.31 E-value=2.9e-06 Score=71.72 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=94.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCc----eeechhhhcCCCccchHHHHHH-HHHHhcccccccCCCceEEEEEechhhh
Q 030204 8 YKKRGLISAEHRINLCNLACKSSDF----IMVDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLE 82 (181)
Q Consensus 8 ~~K~~~~~~~~Rl~M~~~ai~~~~~----~~v~~~E~~~~~~syT~~tl~~-l~~~~~~~~~~~~~~~~~~fiiG~D~~~ 82 (181)
+.|.+-++.+-|++..+.+++.+|. +.+-.....-.||...+ +.. +++.|+- . .||+|-|..-
T Consensus 226 ~tK~~Dip~~vR~~~~~~~l~~yp~~~v~l~~~p~~mryAGPrEai--~HAiiRkN~Gc---------t-hfIVGRDhAG 293 (395)
T 1r6x_A 226 LTKPGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDREAV--WHAIIRKNYGA---------S-HFIVGRDHAG 293 (395)
T ss_dssp BCCTTCCCHHHHHHHHHHHGGGSSTTCEEECCBCCBCCCCHHHHHH--HHHHHHHHTTC---------S-EEEECTTTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCccEEEEecchhhhhcCcHHHH--HHHHHHHHcCC---------c-eEEECCCCCC
Confidence 5577789999999999999998765 34445555566776432 333 4677754 2 8999999875
Q ss_pred --------hCCCCCCCCcchHHHHhhcc------cEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCC-----CCCccc
Q 030204 83 --------SFAIPGFWMPEQVWTICRNF------GVICIRREGQDVEKIISDNEILDKNKGNIKLVDEL-----VPNQIS 143 (181)
Q Consensus 83 --------~l~~w~~W~~~~~~~l~~~~------~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~IS 143 (181)
+|= .|+++ ++|+..+ .++.+...-|... .+.+...+.. ....||
T Consensus 294 ~g~~~~~~d~Y---~~~~a--q~i~~~~~~el~I~~v~f~~~~Y~~~------------~~~~~~~~~~p~~~~~~~~iS 356 (395)
T 1r6x_A 294 PGKNSKGVDFY---GPYDA--QELVESYKHELDIEVVPFRMVTYLPD------------EDRYAPIDQIDTTKTRTLNIS 356 (395)
T ss_dssp CCBCTTSCBSS---CTTHH--HHHHHHHHHHHTCEEEECCCEEEEGG------------GTEEEETTTSCSSSCCCBCCC
T ss_pred CCCCCcccccC---CcchH--HHHHHhchhccCceEEEecceEEecc------------cCeEEEcccCCCCccceEccC
Confidence 443 46665 8888876 5666665544322 1222222211 247999
Q ss_pred HHHHHHHHHcCCCC-CccChHHHHHHHHhCCCCCC
Q 030204 144 STRIRDCICRGLSI-KYLTEDKVIDYIRESRLYLN 177 (181)
Q Consensus 144 ST~IR~~l~~g~~~-~~lvp~~V~~yI~~~~LY~~ 177 (181)
+|.||+.++.|..+ ..+++++|.+.+++ +|..
T Consensus 357 GT~~R~~L~~G~~pP~~f~rpeV~~iL~~--~~~~ 389 (395)
T 1r6x_A 357 GTELRRRLRVGGEIPEWFSYPEVVKILRE--SNPP 389 (395)
T ss_dssp HHHHHHHHHHTCCCCTTTSCHHHHHHHTT--C---
T ss_pred HHHHHHHHHCcCCCCcccCCHHHHHHHHH--hcCC
Confidence 99999999999988 77999999998877 5544
No 28
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.06 E-value=1.6e-05 Score=69.41 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=95.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCc----eeechhhhcCCCccchHHHHHH-HHHHhcccccccCCCceEEEEEechhhh
Q 030204 8 YKKRGLISAEHRINLCNLACKSSDF----IMVDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLE 82 (181)
Q Consensus 8 ~~K~~~~~~~~Rl~M~~~ai~~~~~----~~v~~~E~~~~~~syT~~tl~~-l~~~~~~~~~~~~~~~~~~fiiG~D~~~ 82 (181)
+.|.+-++.+-|++..+.+++.+|. +.+-.+...-.||...+ +.. +++.|+- . .||+|-|..-
T Consensus 227 ~~k~~di~~~~r~~~~~~~~~~yp~~~~~l~~~p~~m~yaGprea~--~hai~r~n~G~---------t-h~IvGrdhAg 294 (511)
T 1g8f_A 227 LTKPGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDREAV--WHAIIRKNYGA---------S-HFIVGRDHAG 294 (511)
T ss_dssp BCSTTCCCHHHHHHHHHHHGGGSCTTSEEECCBCCBCCCCHHHHHH--HHHHHHHHTTC---------S-EEECCTTTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCcccEEEEecchhhhccCcHHHH--HHHHHHHhCCC---------c-eEEeCCCCCC
Confidence 5577789999999999999998765 33455665667776433 333 5677754 2 8999999865
Q ss_pred --------hCCCCCCCCcchHHHHhhcc------cEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCC-----CCccc
Q 030204 83 --------SFAIPGFWMPEQVWTICRNF------GVICIRREGQDVEKIISDNEILDKNKGNIKLVDELV-----PNQIS 143 (181)
Q Consensus 83 --------~l~~w~~W~~~~~~~l~~~~------~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~IS 143 (181)
+|= .|+++ ++|+..+ .++.+..-.+... .+.+..++..+ ...||
T Consensus 295 ~g~~~~~~~~Y---~~~~a--q~i~~~~~~~l~i~pv~fd~~~y~~~------------~g~~i~~d~~p~~~~~~~~iS 357 (511)
T 1g8f_A 295 PGKNSKGVDFY---GPYDA--QELVESYKHELDIEVVPFRMVTYLPD------------EDRYAPIDQIDTTKTRTLNIS 357 (511)
T ss_dssp CCBCTTSCBSS---CTTHH--HHHHHHTHHHHCSEEECCCCEEEEGG------------GTEEEEGGGCSSSCCCCBCCC
T ss_pred CCCCCcccccC---CcchH--HHHHHhCccccCceEEeecceeEecc------------cCeEEEcccCCCCcccccccC
Confidence 433 45665 8888876 5555544332211 23455554222 37999
Q ss_pred HHHHHHHHHcCCCC-CccChHHHHHHHHhC
Q 030204 144 STRIRDCICRGLSI-KYLTEDKVIDYIRES 172 (181)
Q Consensus 144 ST~IR~~l~~g~~~-~~lvp~~V~~yI~~~ 172 (181)
+|.||+.++.|..+ ..+++++|.+.+++.
T Consensus 358 gt~IR~~Lr~G~~~P~~f~rpeV~~vLr~~ 387 (511)
T 1g8f_A 358 GTELRRRLRVGGEIPEWFSYPEVVKILRES 387 (511)
T ss_dssp HHHHHHHHHHTCCCCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCccccChhhHHHHHHh
Confidence 99999999999988 689999999999873
No 29
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.02 E-value=5.4e-07 Score=75.11 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=34.4
Q ss_pred CCCCCCCCC-----C----CCCCCHHHHHHHHHHHhcCCCc-eeechhhhcCCCcc
Q 030204 1 MSPVNDAYK-----K----RGLISAEHRINLCNLACKSSDF-IMVDPWEANQSGYQ 46 (181)
Q Consensus 1 ~~P~~~~~~-----K----~~~~~~~~Rl~M~~~ai~~~~~-~~v~~~E~~~~~~s 46 (181)
|+|++++|+ | +..+++++|++|+++|+++.++ ++|+.++.. ..++
T Consensus 34 v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~v~~~~~~-~~~~ 88 (365)
T 1lw7_A 34 VIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIHHLVED-GIPS 88 (365)
T ss_dssp EEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEEEEEECS-SSCC
T ss_pred EEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcEEEEEeccC-CCCC
Confidence 356666663 1 3359999999999999999998 999988754 3444
No 30
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=95.99 E-value=0.012 Score=48.60 Aligned_cols=101 Identities=18% Similarity=0.117 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHH-HHHHhcccccccCCCceEEEEEechhhhhCCCCCCC
Q 030204 12 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 90 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~-l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W 90 (181)
.+.+.++|++|++.+ +.+.+.+.++.......+. -+.++. +.+.+. --++++|.|..-.-. +|
T Consensus 70 ~L~~~~eR~~ll~~~--gVD~v~v~~F~~~~a~ls~-e~Fi~~il~~~l~----------~~~ivvG~Df~FG~~---r~ 133 (338)
T 2x0k_A 70 GITTLAERFALAESF--GIDGVLVIDFTRELSGTSP-EKYVEFLLEDTLH----------ASHVVVGANFTFGEN---AA 133 (338)
T ss_dssp BSSCHHHHHHHHHHT--TCSEEEEECTTTSSSSCCH-HHHHHHCCCCCTC----------EEEEEEETTCEESGG---GC
T ss_pred CCCCHHHHHHHHHhc--CCCEEEEccccHHHHhCCH-HHHHHHHHHhhcC----------CCEEEEeecCCCCCC---CC
Confidence 478999999999973 4566666566433333221 133333 222221 248999999876655 34
Q ss_pred CcchHHHHhhcc----cEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCC
Q 030204 91 MPEQVWTICRNF----GVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 155 (181)
Q Consensus 91 ~~~~~~~l~~~~----~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~ 155 (181)
.+. +.|-+.+ .++++++- ..+ ...||||.||+.|.+|.
T Consensus 134 g~~--~~L~~~~~~g~~V~~v~~~----------------------~~~---~~~ISST~IR~~L~~G~ 175 (338)
T 2x0k_A 134 GTA--DSLRQICQSRLTVDVIDLL----------------------DDE---GVRISSTTVREFLSEGD 175 (338)
T ss_dssp EEH--HHHHHHTTTTSEEEEECCC----------------------EET---TEECSHHHHHHHHHTTC
T ss_pred CCH--HHHHHHhcCCeEEEEECcE----------------------ecC---CcccccchHHHHHhcCc
Confidence 442 3333322 22222211 011 24899999999999884
No 31
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=95.32 E-value=0.11 Score=42.33 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhh--cCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCC
Q 030204 12 GLISAEHRINLCNLACKSSDFIMVDPWEA--NQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGF 89 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~--~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~ 89 (181)
.+.+.++|+++++.+ +.+.+-+-++.. ..-.+. +.++.+...+. --.+++|.|.--.-. .
T Consensus 77 ~Lt~~~eK~~ll~~l--GVD~v~~~~F~~~~a~ls~e---~Fv~~ll~~l~----------~~~ivvG~DfrFG~r---~ 138 (308)
T 3op1_A 77 HILNPAERERKLKRE--GVEELYLLDFSSQFASLTAQ---EFFATYIKAMN----------AKIIVAGFDYTFGSD---K 138 (308)
T ss_dssp BSSCHHHHHHHHHHH--TCCEEEEECCCHHHHTCCHH---HHHHHHHHHHT----------EEEEEEETTCCBTTT---T
T ss_pred cCCCHHHHHHHHHHc--CCCEEEEecCCHHHHcCCHH---HHHHHHHHHcC----------CCEEEECcCCCCCCc---C
Confidence 478999999999864 345555544432 122222 23333223332 248899999422211 2
Q ss_pred CCcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCC
Q 030204 90 WMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 155 (181)
Q Consensus 90 W~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~ 155 (181)
+.-..++++.+. .+.++++-. .....||||.||+.|..|.
T Consensus 139 G~~~~L~~~~~~-~V~~v~~~~-------------------------~~~~~ISST~IR~~L~~G~ 178 (308)
T 3op1_A 139 KTAEDLKNYFDG-EVIIVPPVE-------------------------DEKGKISSTRIRQAILDGN 178 (308)
T ss_dssp BCSTTHHHHCSS-EEEEECCCB-------------------------CSSCBCCHHHHHHHHHHTC
T ss_pred CCHHHHHHhCCC-CEEEeCCEe-------------------------cCCceEeHHHHHHHHHcCC
Confidence 221112333222 244443210 0125899999999999874
No 32
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=95.08 E-value=0.026 Score=45.66 Aligned_cols=96 Identities=18% Similarity=0.137 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechh-hhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCC
Q 030204 12 GLISAEHRINLCNLACKSSDFIMVDPW-EANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFW 90 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~v~~~-E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W 90 (181)
.+.+.++|++|++.+ . .+.+-++ +.....+. +.++.+. ..++ ++++|.|.-..-. .|
T Consensus 52 ~l~~~~eR~~ll~~l-g---~~~v~~F~~~a~ls~~---~Fi~~il-l~~~-----------~iVvG~Df~fG~~---~~ 109 (293)
T 1mrz_A 52 LLMTVESRVEMLSRY-A---RTVVLDFFRIKDLTPE---GFVERYL-SGVS-----------AVVVGRDFRFGKN---AS 109 (293)
T ss_dssp BSSCHHHHHHHHTTT-S---CEEEECHHHHTTCCHH---HHHHHHC-TTCC-----------EEEEETTCCBSGG---GC
T ss_pred CCCCHHHHHHHHHhC-C---CEEEEEhHHhhcCCHH---HHHHHHh-cCCC-----------EEEECCCCCCCCC---CC
Confidence 488999999999864 2 4444444 22222222 3343322 2222 7999999865544 34
Q ss_pred CcchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCC
Q 030204 91 MPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 155 (181)
Q Consensus 91 ~~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~ 155 (181)
.+. +.|-+ +++-|..-+. + .. ....||||.||+.|..|.
T Consensus 110 g~~--~~L~~-~G~~V~~v~~-------------------~-~~---~~~~iSST~IR~~L~~G~ 148 (293)
T 1mrz_A 110 GNA--SFLRK-KGVEVYEIED-------------------V-VV---QGKRVSSSLIRNLVQEGR 148 (293)
T ss_dssp BCH--HHHHH-TTCEEEEECC-------------------C-EE---TTEECCHHHHHHHHHTTC
T ss_pred CCH--HHHHh-CCCEEEEECC-------------------E-Ee---CCccccHhHHHHHHhcCc
Confidence 331 44433 3222222110 0 01 124799999999999884
No 33
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=94.57 E-value=0.023 Score=47.29 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHcCC--CCCccChHHHHHHHHhC
Q 030204 141 QISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 172 (181)
Q Consensus 141 ~ISST~IR~~l~~g~--~~~~lvp~~V~~yI~~~ 172 (181)
.+|+|.||+.+..|. .++.+||+.+.+|+.+.
T Consensus 226 ~~SAS~IR~~i~~g~~~~~~~lVP~~t~~~l~~~ 259 (357)
T 3gmi_A 226 GISGTKIREAIFSGKFEDIKNMLPKTTLSILKEL 259 (357)
T ss_dssp CCCHHHHHHHHHTTCGGGTGGGSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCChhHHHhcCChHHHHHHHHH
Confidence 799999999999995 89999999999999863
No 34
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=94.52 E-value=0.0069 Score=44.17 Aligned_cols=39 Identities=8% Similarity=-0.044 Sum_probs=29.2
Q ss_pred CCCCCCCCC-C--CCCCCHHHHHHHHHHHh-cCC-Cceeechhh
Q 030204 1 MSPVNDAYK-K--RGLISAEHRINLCNLAC-KSS-DFIMVDPWE 39 (181)
Q Consensus 1 ~~P~~~~~~-K--~~~~~~~~Rl~M~~~ai-~~~-~~~~v~~~E 39 (181)
|+|+.++++ | +..+++++|++|+++|+ +++ +.+.+..++
T Consensus 33 v~v~~~~~~~k~~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~ 76 (148)
T 3do8_A 33 IGVTSDRMARARIRSVLPFAIRAENVKRYVMRKYGFEPEIVKIT 76 (148)
T ss_dssp EEEECHHHHHHHSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred EEECCCccccccCCCCCCHHHHHHHHHHHHhcccCCcEEEEeec
Confidence 357777775 3 35889999999999999 764 456666655
No 35
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=93.92 E-value=0.05 Score=39.02 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceee
Q 030204 11 RGLISAEHRINLCNLACKSSDFIMV 35 (181)
Q Consensus 11 ~~~~~~~~Rl~M~~~ai~~~~~~~v 35 (181)
...++.++|++|++. +...+.+.+
T Consensus 48 ~~l~~~~eR~~~l~~-~~~vd~v~~ 71 (143)
T 3glv_A 48 IPIFDENSRLALISE-LKVVDRAIL 71 (143)
T ss_dssp CCSSCHHHHHHHHTT-BTTCSEEEE
T ss_pred CCCCCHHHHHHHHHh-cCCCCEEEE
Confidence 367899999999986 443444444
No 36
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=93.26 E-value=0.46 Score=37.14 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceee
Q 030204 11 RGLISAEHRINLCNLACKSSDFIMV 35 (181)
Q Consensus 11 ~~~~~~~~Rl~M~~~ai~~~~~~~v 35 (181)
...++.++|++|++. ++..+.+.+
T Consensus 124 ~pi~s~eER~e~v~~-~k~VD~Vvv 147 (236)
T 3hl4_A 124 FTVMNENERYDAVQH-CRYVDEVVR 147 (236)
T ss_dssp CCSSCHHHHHHHHHT-BTTCSEEES
T ss_pred CCCCCHHHHHHHHHH-hCCCCeEEE
Confidence 368899999999994 555555444
No 37
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=85.81 E-value=3.3 Score=36.03 Aligned_cols=140 Identities=12% Similarity=0.125 Sum_probs=70.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcCC-C--ceeechhhh--cCCCccchHHHHH-HHHHHhcccccccCCCceEEEEEechhhh
Q 030204 9 KKRGLISAEHRINLCNLACKSS-D--FIMVDPWEA--NQSGYQRTLTVLS-RVKNFLIEAGLISTESLKVMLVCGSDLLE 82 (181)
Q Consensus 9 ~K~~~~~~~~Rl~M~~~ai~~~-~--~~~v~~~E~--~~~~~syT~~tl~-~l~~~~~~~~~~~~~~~~~~fiiG~D~~~ 82 (181)
.|.+-++.+.|++..+.+++.+ | .+.+..+.. .-.||. -..+. .+++.|+- . .||+|-|..-
T Consensus 203 ~k~~di~~~~R~~~~~~~~~~~~p~~~v~~~~~p~~m~~agpr--ea~~ha~ir~n~G~---------t-h~ivgrdhag 270 (546)
T 2gks_A 203 TKPGDVDVYTRMRIYKVLYEKYYDKKKTILAFLPLAMRMAGPR--EALWHGIIRRNYGA---------T-HFIVGRDHAS 270 (546)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHSCTTTEEECBBCCBCCCCTHH--HHHHHHHHHHHTTC---------S-EEEECTTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeecCchhhccCch--HHHHHHHHHHhCCC---------C-eEEECCCCCC
Confidence 3557789999999999998864 3 344444432 334554 22222 34566653 3 6788877543
Q ss_pred hCCC--CCCCCc-chHHHHhhc------ccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCC-----CCCcccHHHHH
Q 030204 83 SFAI--PGFWMP-EQVWTICRN------FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDEL-----VPNQISSTRIR 148 (181)
Q Consensus 83 ~l~~--w~~W~~-~~~~~l~~~------~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ISST~IR 148 (181)
--.. -..+|. .+-++|+.. ...+.+.--.+. +-.+.+..++.. ....||+|.||
T Consensus 271 ~g~~~~~~~~Y~~~~a~~~~~~~~~~lgi~~v~fd~~~y~------------~~~g~~i~id~~~~~~~~~~~iSgt~iR 338 (546)
T 2gks_A 271 PGKDSKGKPFYDPYEAQELFKKYEDEIGIKMVPFEELVYV------------PELDQYVEINEAKKRNLKYINISGTEIR 338 (546)
T ss_dssp CCBCTTSCBSSCTTHHHHHHHHHHHHHTCEEEECCCCEEE------------TTTTEEECSCC---------------CT
T ss_pred CCCCCCCcccCCcchHHHHHHhcccccCceEEeccceEEE------------cCCCeEEeeeccCCCCceeeecchhhhh
Confidence 2210 001332 223666643 223333221111 012444444311 23579999999
Q ss_pred HH-HHcCCCCC-ccChHHHHHHHHhC
Q 030204 149 DC-ICRGLSIK-YLTEDKVIDYIRES 172 (181)
Q Consensus 149 ~~-l~~g~~~~-~lvp~~V~~yI~~~ 172 (181)
+. ++.|..+. .+..++|.+-+++.
T Consensus 339 ~~~L~~g~~~p~~~~r~eV~~~lr~~ 364 (546)
T 2gks_A 339 ENFLKQGRKLPEWFTRPEVAEILAET 364 (546)
T ss_dssp HHHHTTTCCCCTTTSCHHHHHHHHHH
T ss_pred hhhhcCCCCCCccccchhHHHHHHHh
Confidence 99 99998874 45558888777663
No 38
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=75.71 E-value=20 Score=31.23 Aligned_cols=141 Identities=14% Similarity=0.108 Sum_probs=76.4
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCc--eeechhhh--cCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhC
Q 030204 9 KKRGLISAEHRINLCNLACKSSDF--IMVDPWEA--NQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESF 84 (181)
Q Consensus 9 ~K~~~~~~~~Rl~M~~~ai~~~~~--~~v~~~E~--~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l 84 (181)
.|.+-++.+.|++..+.+++.+|. +.+..+.. .-.||.-.+.- ..+++.|+ +. .||+|-|-.---
T Consensus 230 ~k~~di~~~~R~~~~~~~~~~~p~~~v~l~~~p~~m~~agprea~~h-a~ir~n~G---------~t-h~ivgrdhag~g 298 (573)
T 1m8p_A 230 TKPGDIDHFTRVRAYQALLPRYPNGMAVLGLLGLAMRMGGPREAIWH-AIIRKNHG---------AT-HFIVGRDHAGPG 298 (573)
T ss_dssp CCTTCHHHHHHHHHHHHHGGGSSTTSEEECBBCCCCCCCHHHHHHHH-HHHHHHHT---------CS-EEEECTTTTCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcEEEEecCchhhccCchHHHHH-HHHHHHCC---------CC-eEEECCCCCCCC
Confidence 456778999999999999887664 33333322 22344311111 34556675 34 788898754332
Q ss_pred CC--CCCCCc-chHHHHhhc------ccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcC----CCCCcccHHHHHHHH
Q 030204 85 AI--PGFWMP-EQVWTICRN------FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE----LVPNQISSTRIRDCI 151 (181)
Q Consensus 85 ~~--w~~W~~-~~~~~l~~~------~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ISST~IR~~l 151 (181)
+. -..+|. .+-++|+.. +..+.+.--.+.. -.+.+..++. .....||.|.||+.+
T Consensus 299 ~~~~~~~~Y~~~~a~~i~~~~~~~l~i~~v~fd~~~y~~------------~~g~~i~id~~~~~~~~~~iSgt~ir~~l 366 (573)
T 1m8p_A 299 SNSKGEDFYGPYDAQHAVEKYKDELGIEVVEFQMVTYLP------------DTDEYRPVDQVPAGVKTLNISGTELRRRL 366 (573)
T ss_dssp CCTTCCCSSCTTHHHHHHHHHHHHHCCEEEECCCCCBBT------------TTTBCCCSSSSCTTSCCBCCCHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHhhhhhcCceeEeccceEEEc------------CCCcEEecccCCCCceeecCChHHHHHHH
Confidence 10 002332 233666653 2333333222211 1233333331 123689999999999
Q ss_pred HcCCCCC-ccChHHHHHHHHhC
Q 030204 152 CRGLSIK-YLTEDKVIDYIRES 172 (181)
Q Consensus 152 ~~g~~~~-~lvp~~V~~yI~~~ 172 (181)
..|..+. ....++|.+-.++.
T Consensus 367 ~~g~~~p~w~~~~eVsr~lRe~ 388 (573)
T 1m8p_A 367 RSGAHIPEWFSYPEVVKILRES 388 (573)
T ss_dssp HHTCCCCTTTSCHHHHHHHHTT
T ss_pred hccCCCCcccccccccHHHHHh
Confidence 9998764 34446777766653
No 39
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=75.11 E-value=11 Score=32.89 Aligned_cols=141 Identities=12% Similarity=-0.007 Sum_probs=69.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCc--ee--echhhhcCCCccchHHHHHH--HHHHhcccccccCCCceEEEEEechhh
Q 030204 8 YKKRGLISAEHRINLCNLACKSSDF--IM--VDPWEANQSGYQRTLTVLSR--VKNFLIEAGLISTESLKVMLVCGSDLL 81 (181)
Q Consensus 8 ~~K~~~~~~~~Rl~M~~~ai~~~~~--~~--v~~~E~~~~~~syT~~tl~~--l~~~~~~~~~~~~~~~~~~fiiG~D~~ 81 (181)
+.|.+-++.+-|++=.+.+++.+|. +. +-.+...-.||. +.+-| +++.|.- =.||+|-|-.
T Consensus 202 ~~k~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~m~~agpr---ea~~ha~~r~n~G~----------th~ivGrdha 268 (552)
T 3cr8_A 202 GDITEAPAYFGLVRSFLAIRDRFPAATTQLSLLPAPPPEASGR---ALLLRAIVARNFGC----------SLLIAGGEHQ 268 (552)
T ss_dssp CCTTTCTTHHHHHHHHHHHGGGSCGGGEEECBBCSCCCCSCSH---HHHHHHHHHHHHTC----------SEEEC-----
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCccEEEeecchhhcccCcH---HHHHHHHHHHhCCC----------CeeeeCCCCC
Confidence 3466788999999999999887764 22 233444445654 44332 4567753 2788888855
Q ss_pred hhCCC--CCCCCc-chHHHHhhcc----cEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCC----CCcccHHHHHHH
Q 030204 82 ESFAI--PGFWMP-EQVWTICRNF----GVICIRREGQDVEKIISDNEILDKNKGNIKLVDELV----PNQISSTRIRDC 150 (181)
Q Consensus 82 ~~l~~--w~~W~~-~~~~~l~~~~----~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ISST~IR~~ 150 (181)
---+. -..||. .+-++|++.+ ++-++.=..+.- ..-.+.+..++..+ ...+|.|+||+.
T Consensus 269 g~g~~~~~~~~Y~~~~a~~i~~~~~~~l~i~pv~f~~~~y----------~~~~g~~~~~d~~~~~~~~~~isgt~ir~~ 338 (552)
T 3cr8_A 269 PDGGDCRRGEDLTQNRVDPSVAERAEKIGVRLIAYPRMVY----------VEDRAEHLPEAEAPQGARLLTLSGEEFQRR 338 (552)
T ss_dssp -----------------CCSSHHHHHHHTCEEECCCCEEE----------EGGGTEEEEGGGSCTTCCEECCCHHHHHHH
T ss_pred CCCCCCCccccCCcchHHHHHHhhhhhcCCeeeeccceEE----------ecCCCeEEecccCCCCcccccCCHHHHHHH
Confidence 32100 001332 1224444432 222222111000 00123444443221 258999999999
Q ss_pred HHcCCCCC-ccChHHHHHHHHh
Q 030204 151 ICRGLSIK-YLTEDKVIDYIRE 171 (181)
Q Consensus 151 l~~g~~~~-~lvp~~V~~yI~~ 171 (181)
++.|..+. .+.-+.|.+-+++
T Consensus 339 Lr~G~~~p~~f~~peV~~vLR~ 360 (552)
T 3cr8_A 339 MRAGLKIPEWYSFPEVLAELHR 360 (552)
T ss_dssp HTTTCCCCTTTSCHHHHHHHHH
T ss_pred HhcCCCCCccccccchhhhhhh
Confidence 99998763 4444677776664
No 40
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=73.01 E-value=12 Score=30.63 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCcee
Q 030204 12 GLISAEHRINLCNLACKSSDFIM 34 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~ 34 (181)
..++.++|++|++. ++..+.+.
T Consensus 54 pi~s~eER~~~l~~-l~~VD~Vv 75 (341)
T 3elb_A 54 PVFTQEERYKMVQA-IKWVDEVV 75 (341)
T ss_dssp CSSCHHHHHHHHHH-BTTCCEEE
T ss_pred CCCCHHHHHHHHHH-cCCCCEEE
Confidence 67899999999996 55555443
No 41
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=56.80 E-value=10 Score=33.70 Aligned_cols=139 Identities=13% Similarity=0.042 Sum_probs=73.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhcC--CC--ceeechhhh--cCCCccchHHHHHH--HHHHhcccccccCCCceEEEEEech
Q 030204 8 YKKRGLISAEHRINLCNLACKS--SD--FIMVDPWEA--NQSGYQRTLTVLSR--VKNFLIEAGLISTESLKVMLVCGSD 79 (181)
Q Consensus 8 ~~K~~~~~~~~Rl~M~~~ai~~--~~--~~~v~~~E~--~~~~~syT~~tl~~--l~~~~~~~~~~~~~~~~~~fiiG~D 79 (181)
+.|.+-++.+-|++=.+..++. +| .+.+..+.. .-.||. +.+-| +++.|.- =.||+|-|
T Consensus 457 ~tk~~di~~~~r~~~~~~~~~~~y~p~~~~~l~~~p~~mryaGPr---Ea~~hai~rkN~Gc----------th~IVGrd 523 (630)
T 1x6v_B 457 WTKDDDVPLMWRMKQHAAVLEEGVLNPETTVVAIFPSPMMYAGPT---EVQWHCRARMVAGA----------NFYIVGRD 523 (630)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHTTSSCGGGEEECCBCCCCCCCHHH---HHHHHHHHHHHTTC----------SEEEECSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCcceEEeeccchhhhcCcH---HHHHHHHHHHhCCC----------CeEEECCC
Confidence 3455677888888888877774 33 344444433 223443 33322 3455643 26778888
Q ss_pred hhhhCCC--CCCCCc-chHHHHhhcc----c--EEEEcCCCCChhhhhhchHHHhhcCCcEEEEcC---CCCCcccHHHH
Q 030204 80 LLESFAI--PGFWMP-EQVWTICRNF----G--VICIRREGQDVEKIISDNEILDKNKGNIKLVDE---LVPNQISSTRI 147 (181)
Q Consensus 80 ~~~~l~~--w~~W~~-~~~~~l~~~~----~--~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ISST~I 147 (181)
-.---+. -..||+ .+-++|++.. + ++.+.-.-|.. -++.+...+. .....||.|.+
T Consensus 524 hAG~g~~~~~~~~Y~~~~aq~i~~~~~~~l~i~~~~~~~~~Y~~------------~~~~~~~~~p~~~~~~~~isgt~~ 591 (630)
T 1x6v_B 524 PAGMPHPETGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAYNK------------KKKRMDYYDSEHHEDFEFISGTRM 591 (630)
T ss_dssp TTCCBCTTTCSBSSCTTHHHHHHHHCTTCTTCEEEECCCEEEET------------TTTEEEECCSTTGGGEECCCHHHH
T ss_pred CCCCCCCCCccccCCcchHHHHHhcCcccCCceEEEcceeEEEc------------ccCceeccCCCCCceeeecCHHHH
Confidence 6533210 001332 2336666522 1 11111110100 0122222210 01258999999
Q ss_pred HHHHHcCCCC-CccChHHHHHHHHh
Q 030204 148 RDCICRGLSI-KYLTEDKVIDYIRE 171 (181)
Q Consensus 148 R~~l~~g~~~-~~lvp~~V~~yI~~ 171 (181)
|+.++.|..+ ..+.-|+|.+-|++
T Consensus 592 R~~l~~G~~pP~~f~rpev~~~l~~ 616 (630)
T 1x6v_B 592 RKLAREGQKPPEGFMAPKAWTVLTE 616 (630)
T ss_dssp HHHHHTTCCCCTTSSCHHHHHHHHH
T ss_pred HHHHHCCCCCCcccCcHHHHHHHHH
Confidence 9999999876 55888999988876
No 42
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=43.77 E-value=4.9 Score=29.90 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCccChHHHHHHHHh--CCC
Q 030204 157 IKYLTEDKVIDYIRE--SRL 174 (181)
Q Consensus 157 ~~~lvp~~V~~yI~~--~~L 174 (181)
.+.-||++|++||++ |++
T Consensus 99 ak~~LP~dVI~Ymrd~~NgI 118 (192)
T 1xou_A 99 AKAQLPDEVISYINDPRNDI 118 (192)
T ss_dssp --------------------
T ss_pred ccccCCHHHHHHHHccCCCe
Confidence 356799999999999 775
No 43
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=39.77 E-value=39 Score=27.55 Aligned_cols=90 Identities=17% Similarity=0.263 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCCC
Q 030204 12 GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWM 91 (181)
Q Consensus 12 ~~~~~~~Rl~M~~~ai~~~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~ 91 (181)
+.++.++|++|++ +++..+.+.+.. ....+++.++.+ -++ +++.|.|....-.
T Consensus 249 pi~~~~ER~~~v~-~~~~vd~V~v~~------~~~l~~~~~~~~---~~~-----------~iv~G~d~~~~~~------ 301 (341)
T 3elb_A 249 PIMNLHERTLSVL-ACRYVSEVVIGA------PYAVTAELLSHF---KVD-----------LVCHGKTEIIPDR------ 301 (341)
T ss_dssp CSSCHHHHHHHHH-TBTTCCEEEEEE------CSSCCHHHHHHT---TCS-----------EEEECSSCCCCCT------
T ss_pred CCCCHHHHHHHHH-HcCCCCCEEECC------CCcchHHHHHhc---CCc-----------EEEECCCCccccC------
Confidence 6889999999999 577777766632 112344554433 344 8899986332110
Q ss_pred cchHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCC
Q 030204 92 PEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 155 (181)
Q Consensus 92 ~~~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~ 155 (181)
.|.+.-. ..+..+.+..+. ....+|.|.|-++|.+++
T Consensus 302 ------------------~g~d~y~-------~~k~~G~~~~i~--~~~~~STt~ii~RI~~nr 338 (341)
T 3elb_A 302 ------------------DGSDPYQ-------EPKRRGIFRQID--SGSNLTTDLIVQRIITNR 338 (341)
T ss_dssp ------------------TSCCTTH-------HHHHHTCEEECC--CSCCCCHHHHHHHHHC--
T ss_pred ------------------CccchHH-------HHHhCCEEEEcC--CCCCCCHHHHHHHHHHHH
Confidence 1111100 112235555554 246999999999887653
No 44
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=37.62 E-value=47 Score=25.31 Aligned_cols=125 Identities=12% Similarity=0.109 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHhcC-CCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCCCc
Q 030204 14 ISAEHRINLCNLACKS-SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMP 92 (181)
Q Consensus 14 ~~~~~Rl~M~~~ai~~-~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~ 92 (181)
.+.++=+.|.+.++++ .+.++|. ... ....+.++.+++.||+ .++|+.++.+.. .-.
T Consensus 22 ~~~~~a~~~a~al~~gGi~~iEvt-----~~t-~~a~~~I~~l~~~~p~------------~~IGAGTVlt~~---~a~- 79 (217)
T 3lab_A 22 DDLVHAIPMAKALVAGGVHLLEVT-----LRT-EAGLAAISAIKKAVPE------------AIVGAGTVCTAD---DFQ- 79 (217)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEE-----TTS-TTHHHHHHHHHHHCTT------------SEEEEECCCSHH---HHH-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-----CCC-ccHHHHHHHHHHHCCC------------CeEeeccccCHH---HHH-
Confidence 4557778889888885 5555553 222 2467899999999975 377998887654 221
Q ss_pred chHHHHhhcccEEEEcCCCCChhhh--hhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCccChHHH---HH
Q 030204 93 EQVWTICRNFGVICIRREGQDVEKI--ISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---ID 167 (181)
Q Consensus 93 ~~~~~l~~~~~~vv~~R~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V---~~ 167 (181)
.-+-..++|+|.+ +.+.+-. ..+...-.+|++ .++. --.+-|++.+++..|-++-++.|.+. .+
T Consensus 80 ---~ai~AGA~fivsP--~~~~evi~~~~~~~v~~~~~~--~~~P----G~~TptE~~~A~~~Gad~vK~FPa~~~gG~~ 148 (217)
T 3lab_A 80 ---KAIDAGAQFIVSP--GLTPELIEKAKQVKLDGQWQG--VFLP----GVATASEVMIAAQAGITQLKCFPASAIGGAK 148 (217)
T ss_dssp ---HHHHHTCSEEEES--SCCHHHHHHHHHHHHHCSCCC--EEEE----EECSHHHHHHHHHTTCCEEEETTTTTTTHHH
T ss_pred ---HHHHcCCCEEEeC--CCcHHHHHHHHHcCCCccCCC--eEeC----CCCCHHHHHHHHHcCCCEEEECccccccCHH
Confidence 3344578999985 4433211 111111012222 2332 13688999999999988777777654 46
Q ss_pred HHHh
Q 030204 168 YIRE 171 (181)
Q Consensus 168 yI~~ 171 (181)
||+.
T Consensus 149 ~lka 152 (217)
T 3lab_A 149 LLKA 152 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 45
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=35.48 E-value=13 Score=24.46 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=17.0
Q ss_pred CccChHHHHHHHHhCCCCCCCC
Q 030204 158 KYLTEDKVIDYIRESRLYLNSN 179 (181)
Q Consensus 158 ~~lvp~~V~~yI~~~~LY~~~~ 179 (181)
+.-|-..+++||++|+|.-+.+
T Consensus 29 r~evvk~lW~YIK~n~Lqdp~~ 50 (93)
T 1v31_A 29 RPRIIAAIWHYVKARKLQNPND 50 (93)
T ss_dssp SHHHHHHHHHHHHHTTCBCSSC
T ss_pred HHHHHHHHHHHHHHccCcCccc
Confidence 3446778999999999986543
No 46
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=33.67 E-value=18 Score=24.20 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=16.7
Q ss_pred ccChHHHHHHHHhCCCCCCCC
Q 030204 159 YLTEDKVIDYIRESRLYLNSN 179 (181)
Q Consensus 159 ~lvp~~V~~yI~~~~LY~~~~ 179 (181)
.-|-..+++||++|+|.-+.+
T Consensus 38 ~eVvk~lW~YIK~nnLQdp~~ 58 (101)
T 1v32_A 38 YDVSDTIAKYISKEGLLDPSN 58 (101)
T ss_dssp HHHHHHHHHHHHHHTCBCSSC
T ss_pred HHHHHHHHHHHHhhcCcCccc
Confidence 346778999999999986544
No 47
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=31.90 E-value=36 Score=26.14 Aligned_cols=120 Identities=10% Similarity=0.088 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHhcC-CCceeechhhhcCCCccchHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCCCCCCCCcc
Q 030204 15 SAEHRINLCNLACKS-SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPE 93 (181)
Q Consensus 15 ~~~~Rl~M~~~ai~~-~~~~~v~~~E~~~~~~syT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~ 93 (181)
+.++=++|++.+++. .+.+++. ...+ ...+.++.+++.||+ .++|+.++.+.. .|.
T Consensus 44 ~~~~a~~~a~al~~gGi~~iEvt-----~~t~-~a~e~I~~l~~~~~~------------~~iGaGTVlt~~---~a~-- 100 (232)
T 4e38_A 44 NAEDIIPLGKVLAENGLPAAEIT-----FRSD-AAVEAIRLLRQAQPE------------MLIGAGTILNGE---QAL-- 100 (232)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEE-----TTST-THHHHHHHHHHHCTT------------CEEEEECCCSHH---HHH--
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe-----CCCC-CHHHHHHHHHHhCCC------------CEEeECCcCCHH---HHH--
Confidence 345556778877775 4445542 2222 357899999999864 367888876644 452
Q ss_pred hHHHHhhcccEEEEcCCCCChhhhhhchHHHhhcCCcEEEEcCCCCCcccHHHHHHHHHcCCCCCccChHHH---HHHHH
Q 030204 94 QVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDYIR 170 (181)
Q Consensus 94 ~~~~l~~~~~~vv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~~~~lvp~~V---~~yI~ 170 (181)
.-+-..++|+|.+ +.+.+- .. ...+ ..+.++.. -.+.|++.+++..|-++-++.|-+. .+||+
T Consensus 101 --~Ai~AGA~fIvsP--~~~~~v-i~---~~~~--~gi~~ipG----v~TptEi~~A~~~Gad~vK~FPa~~~gG~~~lk 166 (232)
T 4e38_A 101 --AAKEAGATFVVSP--GFNPNT-VR---ACQE--IGIDIVPG----VNNPSTVEAALEMGLTTLKFFPAEASGGISMVK 166 (232)
T ss_dssp --HHHHHTCSEEECS--SCCHHH-HH---HHHH--HTCEEECE----ECSHHHHHHHHHTTCCEEEECSTTTTTHHHHHH
T ss_pred --HHHHcCCCEEEeC--CCCHHH-HH---HHHH--cCCCEEcC----CCCHHHHHHHHHcCCCEEEECcCccccCHHHHH
Confidence 3455688999865 443321 11 1111 13444431 2389999999999988766666333 36665
Q ss_pred h
Q 030204 171 E 171 (181)
Q Consensus 171 ~ 171 (181)
+
T Consensus 167 a 167 (232)
T 4e38_A 167 S 167 (232)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=25.67 E-value=39 Score=22.04 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=15.4
Q ss_pred cChHHHHHHHHhCCCCCCC
Q 030204 160 LTEDKVIDYIRESRLYLNS 178 (181)
Q Consensus 160 lvp~~V~~yI~~~~LY~~~ 178 (181)
-|-..+++||++|+|.-+.
T Consensus 31 evvk~lW~YIK~n~Lqdp~ 49 (93)
T 1uhr_A 31 VIIQALWQYIKTHKLQDPH 49 (93)
T ss_dssp HHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHHHHHHHhccCCCcc
Confidence 3667899999999998654
No 49
>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}
Probab=24.86 E-value=35 Score=24.77 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHhcccccccCCCceEEEEEechhhhhCC
Q 030204 47 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFA 85 (181)
Q Consensus 47 yT~~tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~ 85 (181)
-|.+.|+.++++||+ .++.++-++|+..-|+
T Consensus 14 Gt~~~L~~i~~~~~~--------~~l~l~~~~~~~~l~~ 44 (172)
T 3tvz_A 14 GTADFLKTIVKKHPS--------ENILLMQGQENAILIH 44 (172)
T ss_dssp ECHHHHHHHHHHCTT--------SEEEEEEESSCEEEEE
T ss_pred CCHHHHHHHHHHCCC--------CceEEEEcCCceEEEE
Confidence 468999999999998 4899999999876554
No 50
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=24.39 E-value=51 Score=21.19 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=17.2
Q ss_pred HHHHHHHcCCCCCccChHHHHHHHHhC
Q 030204 146 RIRDCICRGLSIKYLTEDKVIDYIRES 172 (181)
Q Consensus 146 ~IR~~l~~g~~~~~lvp~~V~~yI~~~ 172 (181)
+||+.+..|++ ..+|.+|+.++
T Consensus 51 ~V~~~l~~G~s-----d~eI~~~~v~R 72 (84)
T 2hl7_A 51 QIYGQLQQGKS-----DGEIVDYMVAR 72 (84)
T ss_dssp HHHHHHHHTCC-----HHHHHHHHHHH
T ss_pred HHHHHHHcCCC-----HHHHHHHHHHh
Confidence 57788888864 78999998864
No 51
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=23.09 E-value=70 Score=20.87 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=17.3
Q ss_pred HHHHHHHcCCCCCccChHHHHHHHHhC
Q 030204 146 RIRDCICRGLSIKYLTEDKVIDYIRES 172 (181)
Q Consensus 146 ~IR~~l~~g~~~~~lvp~~V~~yI~~~ 172 (181)
+||+.+..|++ .++|++|+.++
T Consensus 48 ~Vre~l~~G~S-----d~eI~~~mv~R 69 (90)
T 2kw0_A 48 KVYELMQEGKS-----KKEIVDYMVAR 69 (90)
T ss_dssp HHHHHHHHTCC-----HHHHHHHHHHH
T ss_pred HHHHHHHcCCC-----HHHHHHHHHHh
Confidence 57788888864 78999998863
Done!