BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030207
         (181 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZBR|A Chain A, Crystal Structure Of The Putative Arginine Deiminase From
           Porphyromonas Gingivalis, Northeast Structural Genomics
           Target Pgr3
 pdb|1ZBR|B Chain B, Crystal Structure Of The Putative Arginine Deiminase From
           Porphyromonas Gingivalis, Northeast Structural Genomics
           Target Pgr3
          Length = 349

 Score = 30.0 bits (66), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 63  AQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEA----DFTARFIE 104
           A  +R A+I  L E+L    VLS R+GA+  D+     D  ARF++
Sbjct: 172 AGLSRTAIIDTLKESLGVSRVLSLRHGALAGDDTDGHIDTLARFVD 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.127    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,637,128
Number of Sequences: 62578
Number of extensions: 104115
Number of successful extensions: 170
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 1
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)