BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030207
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M7N6|MAF1_SOLLC MFP1 attachment factor 1 OS=Solanum lycopersicum GN=MAF1 PE=1 SV=1
Length = 152
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/94 (69%), Positives = 78/94 (82%)
Query: 56 TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAA 115
+F IWPP QRTRDAVI RLIE+L+TPS+LSKRYG +P DEA TAR IE +AF+ A + A
Sbjct: 25 SFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGSTA 84
Query: 116 SAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAAS 149
S DDGIE+LQVYSKEISKRM++ VKSRS+ AA+
Sbjct: 85 SDADDGIEILQVYSKEISKRMIDTVKSRSAPAAA 118
>sp|Q9C500|WPP2_ARATH WPP domain-containing protein 2 OS=Arabidopsis thaliana GN=WPP2
PE=1 SV=1
Length = 180
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 91/126 (72%), Gaps = 2/126 (1%)
Query: 22 LDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTP 81
+ A+ D QE+ D D+ ++ + ++ RIWPP Q+TRDAV+ RLIETL+T
Sbjct: 25 ISAMTDPTSQEAASKD--TDLTKEAESEKKPGGISLRIWPPTQKTRDAVLNRLIETLSTE 82
Query: 82 SVLSKRYGAMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVK 141
S+LSKRYG + +D+A A+ IE +A+ VA A S++DDGI++L++YSKEISKRMLE+VK
Sbjct: 83 SILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVK 142
Query: 142 SRSSAA 147
+RS+A+
Sbjct: 143 ARSNAS 148
>sp|Q9FMH6|WPP1_ARATH WPP domain-containing protein 1 OS=Arabidopsis thaliana GN=WPP1
PE=1 SV=1
Length = 155
Score = 126 bits (317), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 90/122 (73%), Gaps = 7/122 (5%)
Query: 42 IPQQESKK-LNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTA 100
+P E++K N ++ RIWPP Q+TRDAVI RLIETL+T S+LSKR+G++ ++EA A
Sbjct: 26 LPTTETEKNPNPVTISLRIWPPTQKTRDAVINRLIETLSTESILSKRFGSLESEEASSVA 85
Query: 101 RFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAA------SGISSG 154
+ IE++A+++A A +DDGIE+L+ YSKEISKRMLE+VK++S+ A+ GI S
Sbjct: 86 KSIEDEAYAIASATVFGDDDGIEILKAYSKEISKRMLESVKAKSNVASPPPKDGDGIESA 145
Query: 155 VD 156
VD
Sbjct: 146 VD 147
>sp|Q0WQ91|WPP3_ARATH WPP domain-containing protein 3 OS=Arabidopsis thaliana GN=WPP3
PE=2 SV=1
Length = 157
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 39 RNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADF 98
R+D + +K+ + F +WPP Q++RD V+ +I+TL+T S+LS +YG + +EA
Sbjct: 33 RSDATSEVTKEEKSGGILFSVWPPCQKSRDYVVNSMIKTLSTDSILSYKYGTIKPEEASA 92
Query: 99 TARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAAS 149
A+ IE A+ +A S+ DGI+ L+VY E S+RM+E+ + R A S
Sbjct: 93 VAKSIEEKAYDIASRFVSS--DGIKNLEVYGIETSERMIESAEVRFKANGS 141
>sp|Q9LE82|RAGP1_ARATH RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1
PE=1 SV=1
Length = 535
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 55 LTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAA 114
L+ ++WPP++ TR ++ R+ + +TTPS+ S++YG + +EA+ A+ IE+ AF+ A+
Sbjct: 13 LSVKMWPPSKSTRLMLVERMTKNITTPSIFSRKYGLLSVEEAEQDAKRIEDLAFATANKH 72
Query: 115 ASAE--DDGIEVLQVYSKEISKRMLEAVK 141
E DG + VY+KE SK ML+ +K
Sbjct: 73 FQNEPDGDGTSAVHVYAKESSKLMLDVIK 101
>sp|Q9M651|RAGP2_ARATH RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2
PE=1 SV=2
Length = 545
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 55 LTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAA 114
+ ++WPP+ TR A+I R+ ++ ++ +++YG++ D+A A+ IE+ AFS A+
Sbjct: 12 FSIKLWPPSLPTRKALIERITNNFSSKTIFTEKYGSLTKDQATENAKRIEDIAFSTANQQ 71
Query: 115 ASAE--DDGIEVLQVYSKEISKRMLEAVKSRSSAAASGISSGVDDTTSP 161
E DG +Q+Y+KE SK +LE +K A + +D+ SP
Sbjct: 72 FEREPDGDGGSAVQLYAKECSKLILEVLKKGPVAKVAARELISEDSVSP 120
>sp|P12693|ALDH_PSEOL Aldehyde dehydrogenase OS=Pseudomonas oleovorans GN=alkH PE=2 SV=1
Length = 483
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%)
Query: 76 ETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKR 135
E L P+VLS AM + + + + D+ +DG + L +Y K+
Sbjct: 337 ERLVVPTVLSNVTAAMDINHEEIFGPLLPIIEYDDIDSVIKRVNDGDKPLALYVFSEDKQ 396
Query: 136 MLEAVKSRSSAAASGISSGVDDTTSPAQPAGGPNEESVSSSVETEG 181
+ + +R+S+ + G++ V P P GG N + S+ G
Sbjct: 397 FVNNIVARTSSGSVGVNLSVVHFLHPNLPFGGVNNSGIGSAHGVYG 442
>sp|Q9SW08|AB4G_ARATH ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4
PE=3 SV=1
Length = 577
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 4 ETQLEASQNDIPQQESKKLDAINDIPQQESKKLDARNDIPQQESKKLN-FSNLTFRIWPP 62
E +E QN E+ + + P ESKK + + I + +S ++ S L+ R W
Sbjct: 254 EYAMEILQNIRDPYENANIALPDHCP--ESKKQNQKQSIVRYKSSRITEISLLSSRFWKI 311
Query: 63 AQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARF 102
RTR ++ ++E+L VL Y + T + RF
Sbjct: 312 IYRTRQLLLTNILESLVVGLVLGTIYLNIGTGKEGIRKRF 351
>sp|Q20748|ATAD3_CAEEL ATPase family AAA domain-containing protein 3 OS=Caenorhabditis
elegans GN=atad-3 PE=3 SV=2
Length = 595
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 111 ADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAASGISSGVDDTTSPAQPAGG 167
A AA D +E ++++ +E K ++E +K+ SG++ ++D T A GG
Sbjct: 194 AKAARDNRDVNLEQMKLHEEENRKTVIEKIKTSGELIGSGLNQFLNDKTKIAAAVGG 250
>sp|A2BIE7|TAPT1_DANRE Transmembrane anterior posterior transformation protein 1 homolog
OS=Danio rerio GN=tapt1 PE=3 SV=1
Length = 567
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 145 SAAASGISSGVDDTTSPAQPAGGPNEESVSSSVETE 180
SAA S +SS T +P G P EE +S+SV T+
Sbjct: 470 SAAPSRVSSRAHRTKHTREPPGDPAEEGMSASVTTQ 505
>sp|Q3TPR7|T184C_MOUSE Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1
Length = 525
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 8 EASQNDIPQQESKKL----DAINDIPQQESKKLDARN----DIPQQES 47
E NDIP+++ K L D +IP+++ K +D R DIP+Q +
Sbjct: 417 EEIMNDIPEEQQKLLNPGQDVTINIPEEQQKLIDKRKDVMIDIPEQNA 464
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.121 0.319
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,524,811
Number of Sequences: 539616
Number of extensions: 2182106
Number of successful extensions: 6163
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 6080
Number of HSP's gapped (non-prelim): 124
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 57 (26.6 bits)