Query 030207
Match_columns 181
No_of_seqs 48 out of 50
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 16:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dme_A PHD finger protein 3; P 80.7 1.6 5.6E-05 32.7 3.9 49 61-111 7-55 (120)
2 1kdx_A CBP; complex (transcrip 61.9 3.8 0.00013 29.7 1.9 50 63-114 11-61 (81)
3 3ndq_A Transcription elongatio 50.3 26 0.00088 25.7 4.8 44 63-111 13-56 (108)
4 3po3_S Transcription elongatio 48.4 25 0.00084 27.8 4.7 43 63-112 14-56 (178)
5 2lw4_A Transcription elongatio 43.7 11 0.00039 27.9 2.0 43 64-111 10-52 (113)
6 2oa4_A SIR5; structure, struct 22.7 85 0.0029 23.1 3.7 47 56-105 30-76 (101)
7 1pqv_S STP-alpha, transcriptio 21.0 97 0.0033 26.1 4.2 41 64-111 146-186 (309)
8 2i9n_A MHB4A peptide; beta-hai 19.6 46 0.0016 20.7 1.4 19 118-136 12-30 (33)
9 2qcu_A Aerobic glycerol-3-phos 17.9 70 0.0024 27.1 2.6 64 85-148 403-475 (501)
10 2doa_A RNA polymerase II elong 13.6 1.2E+02 0.0041 22.8 2.6 24 59-82 78-102 (104)
No 1
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.65 E-value=1.6 Score=32.73 Aligned_cols=49 Identities=24% Similarity=0.246 Sum_probs=36.1
Q ss_pred CCCchhHHHHHHHHHHhcccchhhhhhcCCCChhhHHHHHhhhHHHHHHhh
Q 030207 61 PPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVA 111 (181)
Q Consensus 61 PPsQrTRdaVV~RmienLSt~SilSkrYG~l~~eEAee~Ak~IEe~AFa~A 111 (181)
|.+..+|+.+++-|.+-|....- .-...++..++...|..||+..|..-
T Consensus 7 ~~~d~~Rd~~r~~L~eaL~~~~~--~~~~~~~~~~~~~lA~~IE~~lf~~~ 55 (120)
T 2dme_A 7 GSADQIRQSVRHSLKDILMKRLT--DSNLKVPEEKAAKVATKIEKELFSFF 55 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT--TTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHhcc--ccccccchhHHHHHHHHHHHHHHHHc
Confidence 45578999999999888863221 11125667789999999999999755
No 2
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=61.91 E-value=3.8 Score=29.65 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHhcc-cchhhhhhcCCCChhhHHHHHhhhHHHHHHhhhhh
Q 030207 63 AQRTRDAVIARLIETLT-TPSVLSKRYGAMPTDEADFTARFIENDAFSVADAA 114 (181)
Q Consensus 63 sQrTRdaVV~RmienLS-t~SilSkrYG~l~~eEAee~Ak~IEe~AFa~An~~ 114 (181)
++.-|..||++|+.-+- +|..+... .---.+--+.|+.||...|..|+.-
T Consensus 11 t~~lR~hlv~Klv~aI~P~pdp~a~~--d~rm~~l~~yArkvE~~~ye~A~sr 61 (81)
T 1kdx_A 11 TQDLRSHLVHKLVQAIFPTPDPAALK--DRRMENLVAYAKKVEGDMYESANSR 61 (81)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSGGGGG--SHHHHHHHHHHHHHHHHHHTTCSSH
T ss_pred CHHHHHHHHHHHHHHhcCCCChhhhh--hHHHHHHHHHHHHHHHHHHHHhccH
Confidence 47789999999998876 44333110 0011235578999999999998753
No 3
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=50.31 E-value=26 Score=25.67 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=32.6
Q ss_pred CchhHHHHHHHHHHhcccchhhhhhcCCCChhhHHHHHhhhHHHHHHhh
Q 030207 63 AQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVA 111 (181)
Q Consensus 63 sQrTRdaVV~RmienLSt~SilSkrYG~l~~eEAee~Ak~IEe~AFa~A 111 (181)
+-.+|+.+++-|.+-|...+=... +| .+....|..||++.|..-
T Consensus 13 ~d~vR~k~~~lL~~aL~~~~d~~~-~~----~~~~~lA~~IE~~if~~~ 56 (108)
T 3ndq_A 13 SDSVRLKCREMLAAALRTGDDYIA-IG----ADEEELGSQIEEAIYQEI 56 (108)
T ss_dssp CCHHHHHHHHHHHHHTTGGGHHHH-HT----CCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcCCCCCc-cc----ccHHHHHHHHHHHHHHHh
Confidence 367899999999999987552211 11 356899999999999764
No 4
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=48.36 E-value=25 Score=27.77 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=33.7
Q ss_pred CchhHHHHHHHHHHhcccchhhhhhcCCCChhhHHHHHhhhHHHHHHhhh
Q 030207 63 AQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVAD 112 (181)
Q Consensus 63 sQrTRdaVV~RmienLSt~SilSkrYG~l~~eEAee~Ak~IEe~AFa~An 112 (181)
+-.+|+.+++-|.+-|...+- -+.++....|..||++.|..-+
T Consensus 14 ~d~vRdk~~~lL~~aL~~~~~-------~~~~~~~~~A~~IE~~if~~~~ 56 (178)
T 3po3_S 14 HHKLRDQVLKALYDVLAKESE-------HPPQSILHTAKAIESEMNKVNN 56 (178)
T ss_dssp -CHHHHHHHHHHHHHTTSSSS-------CSTTHHHHHHHHHHHHHHHHTS
T ss_pred CChHHHHHHHHHHHHHhcCCC-------CchhhHHHHHHHHHHHHHHHhc
Confidence 457899999999999987642 2356889999999999997543
No 5
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.68 E-value=11 Score=27.89 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHhcccchhhhhhcCCCChhhHHHHHhhhHHHHHHhh
Q 030207 64 QRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVA 111 (181)
Q Consensus 64 QrTRdaVV~RmienLSt~SilSkrYG~l~~eEAee~Ak~IEe~AFa~A 111 (181)
-.+||.+++-|.+-|.+.+-. .....+++..|..||+..|..-
T Consensus 10 D~vRdk~~e~L~~aL~~~~~~-----~~~~~~~~~~A~~IE~~~f~~~ 52 (113)
T 2lw4_A 10 DAVRNKCREMLTAALQTDHDH-----VAIGADCERLSAQIEECIFRDV 52 (113)
T ss_dssp STTHHHHHHHHHHHHHSSTHH-----HHHTCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCc-----ccccchHHHHHHHHHHHHHHHc
Confidence 457888888888888653221 0112357789999999999754
No 6
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=22.73 E-value=85 Score=23.13 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=37.1
Q ss_pred cEEecCCCchhHHHHHHHHHHhcccchhhhhhcCCCChhhHHHHHhhhHH
Q 030207 56 TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIEN 105 (181)
Q Consensus 56 S~kiWPPsQrTRdaVV~RmienLSt~SilSkrYG~l~~eEAee~Ak~IEe 105 (181)
.++-|=-. -+.+||+-|+.++.|..=-++|||. +.++...=-+.+++
T Consensus 30 ~~rRWva~--rK~~VV~~v~~g~lS~~EAa~ry~I-s~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 30 NTRRWVAS--RKIAVVRGVIYGLITLAEAKQTYGL-SDEEFNSWVSALAE 76 (101)
T ss_dssp CCSCCCHH--HHHHHHHHHHHTTCCHHHHHHTTCS-SHHHHHHHHHHHHC
T ss_pred HHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 45555433 3788999999999999999999998 98888777766654
No 7
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=21.02 E-value=97 Score=26.07 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHhcccchhhhhhcCCCChhhHHHHHhhhHHHHHHhh
Q 030207 64 QRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVA 111 (181)
Q Consensus 64 QrTRdaVV~RmienLSt~SilSkrYG~l~~eEAee~Ak~IEe~AFa~A 111 (181)
..+|+.+++-|.+-|...+.. + .+++.+.|..||+..|..-
T Consensus 146 d~~R~k~r~~L~~aL~~~~~~------~-~~~~~~~A~~IE~al~~~~ 186 (309)
T 1pqv_S 146 HKLRDQVLKALYDVLAKESEH------P-PQSILHTAKAIESEMNKVN 186 (309)
T ss_pred hHHHHHHHHHHHHHHhcCCCc------c-chhHHHHHHHHHHHHHHHh
Confidence 478999999999999764321 1 2388999999999999754
No 8
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=19.59 E-value=46 Score=20.71 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=15.1
Q ss_pred CCCchHHHHHHHHHHHHHH
Q 030207 118 EDDGIEVLQVYSKEISKRM 136 (181)
Q Consensus 118 dgDGieavQlYAKE~SKrM 136 (181)
+|-|.+|-..|+|.|...|
T Consensus 12 eggggsaaeayakriaeam 30 (33)
T 2i9n_A 12 EGGGGSAAEAYAKRIAEAM 30 (33)
T ss_dssp CSSCCCSTHHHHHHHHHHH
T ss_pred ecCCchHHHHHHHHHHHHH
Confidence 4678888899998887766
No 9
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=17.93 E-value=70 Score=27.12 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=42.9
Q ss_pred hhhcCCCChhhHHHHHhhhHHHHHHhhhhhcC-CC-----CCc-h--HHHHHHHHHHHHHHHHHHhccccccc
Q 030207 85 SKRYGAMPTDEADFTARFIENDAFSVADAAAS-AE-----DDG-I--EVLQVYSKEISKRMLEAVKSRSSAAA 148 (181)
Q Consensus 85 SkrYG~l~~eEAee~Ak~IEe~AFa~An~~~~-pd-----gDG-i--eavQlYAKE~SKrMLE~lK~rs~~a~ 148 (181)
-++|+.|+.+++...+++--..|+.+...... |+ +.+ + |++..-..|.-....++|++|+...-
T Consensus 403 ~~~~~~~~~~~~~~l~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~e~~~~~~d~l~rRtr~~~ 475 (501)
T 2qcu_A 403 RRRYPFLTESLARHYARTYGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGM 475 (501)
T ss_dssp HHHCTTSCHHHHHHHHHHTGGGHHHHHTTCCSGGGGCCBCSTTCBHHHHHHHHHHSCCCSHHHHHHTTCCGGG
T ss_pred HHhccCCCHHHHHHHHhhhchhHHHHHHhcccChhhccccCCcccHHHHHHHHHhcCCCCHHHHHHHHHhcch
Confidence 34577789999988888777777777654321 11 122 2 44444446667789999999998753
No 10
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=13.61 E-value=1.2e+02 Score=22.78 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=20.3
Q ss_pred ecCC-CchhHHHHHHHHHHhcccch
Q 030207 59 IWPP-AQRTRDAVIARLIETLTTPS 82 (181)
Q Consensus 59 iWPP-sQrTRdaVV~RmienLSt~S 82 (181)
.||. ++.-|..|.++|..+|.-|+
T Consensus 78 dWp~Yte~erq~v~r~l~~~l~~p~ 102 (104)
T 2doa_A 78 DWPGYSEGDQQLLKRVLVRKLSGPS 102 (104)
T ss_dssp CCTTCCSHHHHHHHHHHHHHSSCSS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 5997 78889999999999998763
Done!