Query 030207
Match_columns 181
No_of_seqs 48 out of 50
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 16:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030207.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030207hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1enwa_ a.5.4.1 (A:) Elongatio 36.1 5.8 0.00042 27.7 1.1 41 64-111 20-60 (114)
2 d1sb0a_ a.12.1.1 (A:) Kix doma 20.2 27 0.002 23.9 2.3 50 63-114 11-61 (87)
3 d1otfa_ d.80.1.1 (A:) 4-oxaloc 19.7 35 0.0026 20.2 2.5 25 55-79 3-28 (59)
4 d1jmxa1 a.3.1.7 (A:2-85) Quino 15.9 36 0.0026 22.2 2.0 27 66-92 35-71 (84)
5 d1pbya1 a.3.1.7 (A:1-85) Quino 13.6 56 0.0041 21.3 2.5 26 67-92 36-71 (85)
6 d2d5ba1 a.27.1.1 (A:349-500) M 13.4 81 0.0059 21.1 3.4 18 120-137 54-71 (152)
7 d1f5ta2 a.76.1.1 (A:1065-1121) 13.0 42 0.003 20.1 1.6 21 83-104 21-41 (57)
8 d1t57a_ c.49.1.2 (A:) Hypothet 12.8 44 0.0032 25.7 2.0 44 59-102 70-120 (186)
9 d2ev0a2 a.76.1.1 (A:63-136) Ma 12.4 1E+02 0.0074 19.2 3.5 15 90-104 26-40 (74)
10 d1jmkc_ c.69.1.22 (C:) Surfact 10.9 73 0.0053 20.4 2.4 18 127-144 213-230 (230)
No 1
>d1enwa_ a.5.4.1 (A:) Elongation factor TFIIS domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.07 E-value=5.8 Score=27.67 Aligned_cols=41 Identities=29% Similarity=0.375 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHhcccchhhhhhcCCCChhhHHHHHhhhHHHHHHhh
Q 030207 64 QRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVA 111 (181)
Q Consensus 64 QrTRdaVV~RmienLSt~SilSkrYG~l~~eEAee~Ak~IEe~AFa~A 111 (181)
..+|+.+++.|.+-|...+- -+.++..+.|..||...|..-
T Consensus 20 d~~R~~~~~~L~~aL~~~~~-------~~~~~~~~la~~IE~~lf~~~ 60 (114)
T d1enwa_ 20 HKLRDQVLKALYDVLAKESE-------HPPQSILHTAKAIESEMNKVN 60 (114)
T ss_dssp TTTHHHHHHHHHHHHHHHCS-------SSCSCHHHHHHHHTTTTTSSC
T ss_pred cHHHHHHHHHHHHHHhCcCc-------cchhHHHHHHHHHHHHHHHHh
Confidence 46899999999999864432 245668889999999999544
No 2
>d1sb0a_ a.12.1.1 (A:) Kix domain of CBP (creb binding protein) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.25 E-value=27 Score=23.95 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=33.0
Q ss_pred CchhHHHHHHHHHHhcc-cchhhhhhcCCCChhhHHHHHhhhHHHHHHhhhhh
Q 030207 63 AQRTRDAVIARLIETLT-TPSVLSKRYGAMPTDEADFTARFIENDAFSVADAA 114 (181)
Q Consensus 63 sQrTRdaVV~RmienLS-t~SilSkrYG~l~~eEAee~Ak~IEe~AFa~An~~ 114 (181)
++.-|..||.+|+..+- +|-..+..=+. -++--+.|+.+|-.+|..|+.-
T Consensus 11 t~~lRnhlV~KLv~aIfP~pdp~a~~D~R--M~~L~~YarkvE~~~ye~a~sr 61 (87)
T d1sb0a_ 11 TQDLRSHLVHKLVQAIFPTPDPAALKDRR--MENLVAYAKKVEGDMYESANSR 61 (87)
T ss_dssp CHHHHHHHHHHHHHHHSCCSCGGGGGSHH--HHHHHHHHHHHHHHHHHHCSSH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHhHHH--HHHHHHHHHHHHHHHHHHHccH
Confidence 56778999999988764 33233221111 1234589999999999999764
No 3
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=19.72 E-value=35 Score=20.16 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=18.8
Q ss_pred ccEEecC-CCchhHHHHHHHHHHhcc
Q 030207 55 LTFRIWP-PAQRTRDAVIARLIETLT 79 (181)
Q Consensus 55 ~S~kiWP-PsQrTRdaVV~RmienLS 79 (181)
+.|.+|+ -+...+..|++++++.|.
T Consensus 3 I~i~~~~Grs~eqK~~l~~~it~~~~ 28 (59)
T d1otfa_ 3 AQLYIIEGRTDEQKETLIRQVSEAMA 28 (59)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 5688897 566667888888888764
No 4
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=15.90 E-value=36 Score=22.23 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHh----cc------cchhhhhhcCCCC
Q 030207 66 TRDAVIARLIET----LT------TPSVLSKRYGAMP 92 (181)
Q Consensus 66 TRdaVV~Rmien----LS------t~SilSkrYG~l~ 92 (181)
.=+++|+||+.. |+ --..|++.||.-|
T Consensus 35 ~W~~~V~~M~~~~Ga~l~~~e~~~Iv~YLa~~yG~~p 71 (84)
T d1jmxa1 35 GWLMSIARMQVMHGLQISDDDRRTLVKYLADKQGLAP 71 (84)
T ss_dssp HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHTCCCG
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 347899999875 22 1235677777443
No 5
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=13.59 E-value=56 Score=21.27 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=16.6
Q ss_pred HHHHHHHHHHh----cc------cchhhhhhcCCCC
Q 030207 67 RDAVIARLIET----LT------TPSVLSKRYGAMP 92 (181)
Q Consensus 67 RdaVV~Rmien----LS------t~SilSkrYG~l~ 92 (181)
=+++|+||++. |+ --..|+..||.-+
T Consensus 36 W~~~V~~M~~~~Ga~l~~~e~~~Iv~YLa~~yG~~p 71 (85)
T d1pbya1 36 WDMTVTRMMRNHGVALEPEERAAIVRHLSDTRGLSL 71 (85)
T ss_dssp HHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 47899999875 32 1235777787433
No 6
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=13.40 E-value=81 Score=21.14 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=12.0
Q ss_pred CchHHHHHHHHHHHHHHH
Q 030207 120 DGIEVLQVYSKEISKRML 137 (181)
Q Consensus 120 DGieavQlYAKE~SKrML 137 (181)
.+++.|.-+++++.+.+=
T Consensus 54 ~al~~i~~~~~~~N~yi~ 71 (152)
T d2d5ba1 54 VALEEAMAYVKALNRYIN 71 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566677777777777653
No 7
>d1f5ta2 a.76.1.1 (A:1065-1121) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=13.04 E-value=42 Score=20.13 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=16.5
Q ss_pred hhhhhcCCCChhhHHHHHhhhH
Q 030207 83 VLSKRYGAMPTDEADFTARFIE 104 (181)
Q Consensus 83 ilSkrYG~l~~eEAee~Ak~IE 104 (181)
||++-- .++.++|.+.|++||
T Consensus 21 fL~~~l-gv~~~~a~~~A~~iE 41 (57)
T d1f5ta2 21 LLTDII-GLDINKVHDEADRWE 41 (57)
T ss_dssp HHHTTS-CCCGGGHHHHHHHHT
T ss_pred HHHHhh-CCCHHHHHHHHHHHH
Confidence 444433 689999999999998
No 8
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.76 E-value=44 Score=25.69 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=36.7
Q ss_pred ecCCCchhHHHHHHHHHHhcccchhh-------hhhcCCCChhhHHHHHhh
Q 030207 59 IWPPAQRTRDAVIARLIETLTTPSVL-------SKRYGAMPTDEADFTARF 102 (181)
Q Consensus 59 iWPPsQrTRdaVV~RmienLSt~Sil-------SkrYG~l~~eEAee~Ak~ 102 (181)
.|.....+|+.|.++=++.|++.-.| |+|||.+.+.|+-..+=|
T Consensus 70 ~~e~~~e~~~~L~~~G~~V~t~tH~lsg~eR~is~kfgG~~p~eiiA~tLR 120 (186)
T d1t57a_ 70 QLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPVEIMAETLR 120 (186)
T ss_dssp CCSSCHHHHHHHHHHTCEEECCSCTTTTHHHHHHHHHCSCCHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHcCCEEEEeccccccchhhhhhhcCCCCHHHHHHHHHH
Confidence 48889999999999999999987765 499999999887655544
No 9
>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=12.44 E-value=1e+02 Score=19.16 Aligned_cols=15 Identities=13% Similarity=0.034 Sum_probs=13.9
Q ss_pred CCChhhHHHHHhhhH
Q 030207 90 AMPTDEADFTARFIE 104 (181)
Q Consensus 90 ~l~~eEAee~Ak~IE 104 (181)
.++.++|.+.|++||
T Consensus 26 g~~~~~a~~~A~~iE 40 (74)
T d2ev0a2 26 GVDEEKIYNDVEGIE 40 (74)
T ss_dssp TCCHHHHHHHHHHHG
T ss_pred CCChhHHHHHHHHHH
Confidence 579999999999999
No 10
>d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]}
Probab=10.87 E-value=73 Score=20.45 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhccc
Q 030207 127 VYSKEISKRMLEAVKSRS 144 (181)
Q Consensus 127 lYAKE~SKrMLE~lK~rs 144 (181)
-|.+|+.+.|+++|.+++
T Consensus 213 ~~~~~va~~I~~~L~~~~ 230 (230)
T d1jmkc_ 213 ETLDRNAGILLEFLNTQT 230 (230)
T ss_dssp HHHHHHHHHHHHHHTCBC
T ss_pred ccHHHHHHHHHHHHhhcC
Confidence 588999999999998864
Done!