BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030208
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 107 VRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166
V +A I GD VIC+E +R++P +V+GSRG G Q V G+V +C+ H + +
Sbjct: 101 VGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMT 160
Query: 167 VVPGKGTSPS 176
+ +PS
Sbjct: 161 IKRNADETPS 170
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1101 PE=3 SV=1
Length = 108
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 80 SVQNQIVYDMSQGLMEKLAIEAMDVAMVR----------TKARIVEGDAAKVICKEAERL 129
+V N++ ++ Q + E +D R +A + G K+IC+ A++
Sbjct: 7 AVGNELTMEVWQQQWQTFEQEGLDTLEKRRQQALALDIECQAEQILGSPGKIICQRAKQD 66
Query: 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169
+V+G RGR + +L GSVG Y HH + VVP
Sbjct: 67 NSDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCC-VFVVP 105
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 30 ELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS-------SVQ 82
+ + +R + +D S HA +WA+ L R DT+ +V + +V+
Sbjct: 419 DFQTAASSSKRNCTYFLTLDLSSESLHAAEWAVGILLRNGDTLIIVDVIECDDPSARAVK 478
Query: 83 NQIVYDMSQGLMEK-----LAIEAMDVAMVRTKARIVEGDAAK-VICKEAERLKPAAVVI 136
+++ + + L EK L + + V V ++ + AK +I + + ++P+ VV+
Sbjct: 479 DRMESEQLETL-EKITKYILKLLSKTVLEVEVNIEVIHHEKAKHLIIEMIDYIEPSLVVM 537
Query: 137 GSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171
GSRGR ++ VL GS Y ++ + P++V K
Sbjct: 538 GSRGRSHLKGVLLGSFSNYLVNK-SSVPVMVARKK 571
>sp|O74782|YGBA_SCHPO Universal stress protein A family protein C25B2.10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC25B2.10 PE=1 SV=1
Length = 307
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADT-----IHLVHAVSSV-----QNQIVYD 88
R R L +D S+ A DW L LAD + ++ S + Q
Sbjct: 137 RTSRTFLCGMDGNSYSEVAVDWLFETL--LADNDEAVVLRVIDPSSKLAEDLSDEQSYRS 194
Query: 89 MSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGL--IQS 146
+++ +M + + D V +V G +I + P ++++G+RG+ L QS
Sbjct: 195 LAEHIMAGILKKVDDDKAVSIIVELVVGKPQDMILRTIHVYSPDSLIVGTRGKALNSFQS 254
Query: 147 VL-QGSVGEYCLHHCKTAPIIVVPGK 171
+L GSV ++CL I+V P +
Sbjct: 255 LLSSGSVSKFCLQKSPIPVIVVRPDR 280
>sp|O06189|Y2623_MYCTU Universal stress protein Rv2623/MT2698 OS=Mycobacterium
tuberculosis GN=Rv2623 PE=1 SV=1
Length = 297
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 18/136 (13%)
Query: 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ----IVYDMSQGLMEKLAI 99
+L+ VD S+ A A R + +HA S V I + +Q + E++
Sbjct: 162 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLA 221
Query: 100 EAM--------DVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGS 151
E + +VA+ R +V A+ + + +E + VV+GSRGRG +L GS
Sbjct: 222 ERLAGWQERYPNVAITRV---VVRDQPARQLVQRSEEAQ--LVVVGSRGRGGYAGMLVGS 276
Query: 152 VGEYCLHHCKTAPIIV 167
VGE +T P+IV
Sbjct: 277 VGETVAQLART-PVIV 291
>sp|O27222|Y1154_METTH Universal stress protein MTH_1154 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1154 PE=3 SV=1
Length = 146
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 74 LVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAA 133
+V ++ N+I+ DM +GL E +V+ +A + EGD A I K AE
Sbjct: 57 MVKELTQRGNEILRDMEKGLT---GPENPNVSF---RAVMREGDPADEIVKVAEEEDVDV 110
Query: 134 VVIGSRGRGLIQSVLQGSVGEYCLHHC 160
+V+G+ G+ L+ L GSV E +H+
Sbjct: 111 IVMGT-GKSLVDKHLLGSVSEKVVHYA 136
>sp|O07552|NHAX_BACSU Stress response protein NhaX OS=Bacillus subtilis (strain 168)
GN=nhaX PE=2 SV=2
Length = 166
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 113 IVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168
I+EGD A+ I + A R+ +V GSR + ++ ++ GSV E L P+++V
Sbjct: 111 ILEGDPAESIIEHANRISADMIVTGSRDQNRLKKLIFGSVSEK-LSAKSDIPVLIV 165
>sp|O53472|Y2026_MYCTU Universal stress protein Rv2026c/MT2085 OS=Mycobacterium
tuberculosis GN=Rv2026c PE=2 SV=1
Length = 294
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 134 VVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGTSP 175
+V+GS+G G + +L GS+ LHH + I+ G G +P
Sbjct: 114 MVVGSQGMGALGRLLLGSISTALLHHARCPVAIIHSGNGATP 155
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDM---------SQGLM 94
+L+ +D P S+ A A R + +HA + + V M ++ L
Sbjct: 161 VLVGIDGSPASEAATALAFDEASRRRVDLVALHAWTDLGMFPVLGMDWREREKREAEVLA 220
Query: 95 EKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGE 154
E+LA VR +V A+ + + +E+ + VV+GS GRG +L GSV
Sbjct: 221 ERLAGWQEQYPDVRVHRSLVCDKPARWLLEHSEQAQ--LVVVGSHGRGGFSGMLLGSVSS 278
Query: 155 YCLHHCKTAPIIVVP 169
H + I+V P
Sbjct: 279 AVAHSVRIPVIVVRP 293
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0531 PE=3 SV=1
Length = 170
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 107 VRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAP 164
V+ ++EG A I + AE+ K +V+G+ G+ ++ +L GSV E + HC P
Sbjct: 104 VKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLGSVAERVIKNAHC---P 160
Query: 165 IIVV 168
++VV
Sbjct: 161 VLVV 164
>sp|Q50777|Y1538_METTM Universal stress protein MTBMA_c15380 OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=MTBMA_c15380 PE=3 SV=1
Length = 143
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 74 LVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAA 133
+V ++ +I+ DM +GL + V+ + ++EG+ A I K AE
Sbjct: 54 MVKELTERGKEILRDMEKGLT------GPENPNVKFRGVMLEGNPADEIVKLAEEEDVDV 107
Query: 134 VVIGSRGRGLIQSVLQGSVGEYCLHHC 160
+++G+ G+ L+ L GSV E +H+
Sbjct: 108 IIMGT-GKSLVDKHLLGSVSEKVVHYA 133
>sp|A0QZA1|Y3950_MYCS2 Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3950
PE=1 SV=1
Length = 294
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 134 VVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170
VV+G+RG G + VL GS LH+ + P++VV G
Sbjct: 114 VVVGNRGMGALGRVLLGSTSTSLLHYA-SGPVVVVHG 149
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1388 PE=3 SV=1
Length = 154
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIV 167
G+ + I A+ VV+G RG + V GSV Y +HH + + +IV
Sbjct: 101 GEPGRWIRDMAKNWDADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIV 152
>sp|P64922|Y2028_MYCBO Universal stress protein Mb2028c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2028c PE=3 SV=1
Length = 295
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQ---------NQIVYDMSQGLM 94
+L+ +D P S+ A A R + VHA S V+ + + + L
Sbjct: 162 VLVGIDGSPVSELATAVAFDEASRRGVELIAVHAWSDVEVVELPGLDFSAVQQEAELSLA 221
Query: 95 EKLAI---EAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGS 151
E+LA DV + R + + A K++ K A VV+GS GRG + +L GS
Sbjct: 222 ERLAGWQERYPDVPVSRVV--VCDRPARKLVQKSA---SAQLVVVGSHGRGGLTGMLLGS 276
Query: 152 VGEYCLHHCKTAPIIV 167
V LH + P+IV
Sbjct: 277 VSNAVLHAARV-PVIV 291
>sp|P64921|Y2005_MYCTU Universal stress protein Rv2005c/MT2061 OS=Mycobacterium
tuberculosis GN=Rv2005c PE=1 SV=1
Length = 295
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQ---------NQIVYDMSQGLM 94
+L+ +D P S+ A A R + VHA S V+ + + + L
Sbjct: 162 VLVGIDGSPVSELATAVAFDEASRRGVELIAVHAWSDVEVVELPGLDFSAVQQEAELSLA 221
Query: 95 EKLAI---EAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGS 151
E+LA DV + R + + A K++ K A VV+GS GRG + +L GS
Sbjct: 222 ERLAGWQERYPDVPVSRVV--VCDRPARKLVQKSA---SAQLVVVGSHGRGGLTGMLLGS 276
Query: 152 VGEYCLHHCKTAPIIV 167
V LH + P+IV
Sbjct: 277 VSNAVLHAARV-PVIV 291
>sp|Q57997|Y577_METJA Universal stress protein MJ0577 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0577 PE=1 SV=1
Length = 162
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 74 LVHAVSSVQNQIVYDMSQ---GLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130
L +V +N++ +++ ME + E DV + K IV G + I K AE
Sbjct: 62 LNKSVEEFENELKNKLTEEAKNKMENIKKELEDVGF-KVKDIIVVGIPHEEIVKIAEDEG 120
Query: 131 PAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGT 173
+++GS G+ ++ +L GSV E + P++VV K +
Sbjct: 121 VDIIIMGSHGKTNLKEILLGSVTENVIKKS-NKPVLVVKRKNS 162
>sp|Q09FY8|YCF1_PLAOC Putative membrane protein ycf1 OS=Platanus occidentalis GN=ycf1 PE=3
SV=1
Length = 1915
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 41 GRDILIAVDHGPNSKHAFDWALIHLC 66
G D +I D P+ K+ FDW ++H C
Sbjct: 1427 GEDYIIETDKNPDRKY-FDWGILHFC 1451
>sp|P74897|YQA3_THEAQ Universal stress protein in QAH/OAS sulfhydrylase 3'region
OS=Thermus aquaticus PE=3 SV=1
Length = 137
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 95 EKLAIEAMDVAMV-RTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGS 151
EK+ EAM + V R A +++G A+ I + A K +V+G+RG G + S+ GS
Sbjct: 63 EKVRAEAMALTGVPREDALLLQGRPAEAILQAAIGEKADLIVMGTRGLGAVGSLFLGS 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,137,507
Number of Sequences: 539616
Number of extensions: 2657925
Number of successful extensions: 7345
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 7321
Number of HSP's gapped (non-prelim): 45
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)