Query 030208
Match_columns 181
No_of_seqs 120 out of 1037
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 16:25:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tnj_A Universal stress protei 99.9 1.1E-26 3.9E-31 164.0 14.0 134 37-172 2-149 (150)
2 3s3t_A Nucleotide-binding prot 99.9 4.5E-26 1.5E-30 160.2 15.4 129 39-169 3-146 (146)
3 3hgm_A Universal stress protei 99.9 4.1E-26 1.4E-30 160.4 14.5 127 40-168 1-147 (147)
4 2z08_A Universal stress protei 99.9 4.2E-26 1.4E-30 159.0 13.8 129 40-169 1-137 (137)
5 1mjh_A Protein (ATP-binding do 99.9 1.9E-25 6.4E-30 159.8 17.1 131 40-172 4-161 (162)
6 2dum_A Hypothetical protein PH 99.9 2.7E-25 9.1E-30 160.3 17.1 134 39-174 3-160 (170)
7 3dlo_A Universal stress protei 99.9 2E-25 6.9E-30 159.2 15.4 133 35-169 18-155 (155)
8 3fg9_A Protein of universal st 99.9 6.8E-25 2.3E-29 156.0 16.3 130 37-169 11-156 (156)
9 1tq8_A Hypothetical protein RV 99.9 2E-25 6.8E-30 160.5 13.5 134 36-172 12-160 (163)
10 3idf_A USP-like protein; unive 99.9 5.9E-25 2E-29 153.1 14.9 124 41-169 1-138 (138)
11 2gm3_A Unknown protein; AT3G01 99.9 4.4E-24 1.5E-28 154.7 15.5 137 40-178 4-171 (175)
12 3fdx_A Putative filament prote 99.9 3.1E-24 1.1E-28 150.2 13.8 125 42-169 2-143 (143)
13 3mt0_A Uncharacterized protein 99.9 3.7E-24 1.3E-28 166.6 15.6 151 11-172 114-278 (290)
14 1jmv_A USPA, universal stress 99.9 7.3E-24 2.5E-28 148.1 10.9 125 40-172 1-140 (141)
15 3olq_A Universal stress protei 99.9 2.2E-23 7.5E-28 164.0 13.4 155 11-176 136-311 (319)
16 3cis_A Uncharacterized protein 99.9 5.9E-23 2E-27 161.2 15.1 153 10-171 146-307 (309)
17 3loq_A Universal stress protei 99.9 5.8E-23 2E-27 160.1 14.0 146 11-173 148-293 (294)
18 3olq_A Universal stress protei 99.9 6.4E-22 2.2E-26 155.6 16.5 135 37-173 3-153 (319)
19 1q77_A Hypothetical protein AQ 99.9 5.7E-22 1.9E-26 138.0 12.3 119 39-169 2-138 (138)
20 3mt0_A Uncharacterized protein 99.9 7.3E-22 2.5E-26 153.7 13.7 126 38-172 4-130 (290)
21 3ab8_A Putative uncharacterize 99.9 2.4E-21 8.1E-26 148.9 14.1 128 42-173 1-152 (268)
22 3cis_A Uncharacterized protein 99.9 2.7E-21 9.4E-26 151.7 14.6 135 36-173 14-164 (309)
23 3loq_A Universal stress protei 99.9 6.9E-22 2.4E-26 154.0 10.9 134 36-173 17-165 (294)
24 3ab8_A Putative uncharacterize 99.8 1.1E-20 3.6E-25 145.3 12.3 135 10-169 134-268 (268)
25 2iel_A Hypothetical protein TT 96.1 0.18 6.2E-06 34.1 12.4 124 41-168 1-133 (138)
26 1wy5_A TILS, hypothetical UPF0 94.4 0.51 1.7E-05 36.5 10.6 95 41-141 24-136 (317)
27 3a2k_A TRNA(Ile)-lysidine synt 94.2 0.52 1.8E-05 38.6 10.8 96 41-141 18-130 (464)
28 3g40_A Na-K-CL cotransporter; 93.2 0.12 4.2E-06 39.6 5.0 105 53-174 177-281 (294)
29 2xry_A Deoxyribodipyrimidine p 92.8 0.81 2.8E-05 37.6 9.7 113 49-170 46-161 (482)
30 1o97_C Electron transferring f 91.2 2.3 7.9E-05 32.0 9.9 84 46-142 31-124 (264)
31 1zun_A Sulfate adenylyltransfe 89.6 2.4 8.1E-05 33.0 9.0 93 41-141 46-157 (325)
32 3umv_A Deoxyribodipyrimidine p 89.4 1.4 4.7E-05 36.6 7.8 91 42-136 38-135 (506)
33 1efp_B ETF, protein (electron 87.9 6.9 0.00024 29.2 11.6 79 50-142 35-125 (252)
34 3ih5_A Electron transfer flavo 86.8 6.1 0.00021 28.7 9.2 86 41-140 3-101 (217)
35 4b4k_A N5-carboxyaminoimidazol 85.0 6.4 0.00022 27.9 8.0 64 100-172 43-110 (181)
36 1iv0_A Hypothetical protein; r 84.5 4.2 0.00015 25.7 6.4 55 117-173 38-96 (98)
37 4grd_A N5-CAIR mutase, phospho 84.4 5.1 0.00017 28.2 7.3 61 101-170 34-98 (173)
38 1g63_A Epidermin modifying enz 83.5 1.4 4.8E-05 31.3 4.2 111 40-171 1-116 (181)
39 1ni5_A Putative cell cycle pro 83.1 7.8 0.00027 31.3 9.0 40 41-80 13-53 (433)
40 2der_A TRNA-specific 2-thiouri 82.8 14 0.00049 29.2 10.3 96 41-141 17-143 (380)
41 3zqu_A Probable aromatic acid 82.4 2.7 9.1E-05 30.6 5.4 36 41-77 4-39 (209)
42 1efv_B Electron transfer flavo 81.9 14 0.00048 27.6 13.4 97 50-165 38-146 (255)
43 2hma_A Probable tRNA (5-methyl 81.8 9.8 0.00034 30.1 9.0 35 42-80 10-44 (376)
44 3kcq_A Phosphoribosylglycinami 81.7 13 0.00044 27.0 9.1 86 40-140 7-92 (215)
45 2ywx_A Phosphoribosylaminoimid 81.5 7.9 0.00027 26.8 7.2 62 100-170 20-82 (157)
46 3g40_A Na-K-CL cotransporter; 80.9 17 0.00057 27.8 11.9 120 42-170 21-146 (294)
47 1k92_A Argininosuccinate synth 80.3 22 0.00076 28.9 10.8 37 40-80 9-45 (455)
48 2c5s_A THII, probable thiamine 80.3 19 0.00067 28.7 10.4 94 41-141 187-301 (413)
49 3kuu_A Phosphoribosylaminoimid 80.0 9.7 0.00033 26.8 7.3 62 101-171 34-99 (174)
50 2wsi_A FAD synthetase; transfe 79.3 13 0.00045 28.5 8.7 93 42-142 54-169 (306)
51 3oow_A Phosphoribosylaminoimid 79.1 13 0.00044 26.0 7.7 62 101-171 27-92 (166)
52 3trh_A Phosphoribosylaminoimid 78.8 8.7 0.0003 26.9 6.8 62 101-171 28-93 (169)
53 1sur_A PAPS reductase; assimil 78.8 15 0.00052 26.1 10.9 89 42-142 45-159 (215)
54 1xmp_A PURE, phosphoribosylami 77.9 12 0.00042 26.1 7.3 63 101-172 33-99 (170)
55 2ejb_A Probable aromatic acid 77.7 4.5 0.00015 28.9 5.3 35 42-77 2-36 (189)
56 2ywb_A GMP synthase [glutamine 77.6 25 0.00087 28.8 10.5 86 42-139 210-317 (503)
57 3lp6_A Phosphoribosylaminoimid 77.3 12 0.00041 26.3 7.2 62 101-171 29-94 (174)
58 3ors_A N5-carboxyaminoimidazol 77.1 13 0.00044 25.9 7.2 63 100-171 24-90 (163)
59 3rg8_A Phosphoribosylaminoimid 76.5 12 0.00042 25.9 7.0 63 100-171 23-90 (159)
60 2wq7_A RE11660P; lyase-DNA com 75.8 9.8 0.00034 31.7 7.6 123 43-171 30-162 (543)
61 2nz2_A Argininosuccinate synth 75.5 20 0.00067 28.8 9.0 36 41-80 5-40 (413)
62 3qjg_A Epidermin biosynthesis 75.5 4.5 0.00015 28.5 4.7 112 40-170 4-118 (175)
63 1o4v_A Phosphoribosylaminoimid 75.0 16 0.00054 25.9 7.3 63 101-172 35-101 (183)
64 3brd_D Protein LIN-12; protein 74.7 0.79 2.7E-05 21.7 0.4 20 6-25 2-21 (29)
65 1u11_A PURE (N5-carboxyaminoim 74.5 16 0.00053 25.9 7.2 63 101-172 43-109 (182)
66 2dpl_A GMP synthetase, GMP syn 72.9 17 0.00059 27.8 7.9 89 42-140 21-130 (308)
67 2l69_A Rossmann 2X3 fold prote 72.0 16 0.00053 22.9 6.3 71 44-129 54-124 (134)
68 3bl5_A Queuosine biosynthesis 71.7 24 0.00081 24.9 10.6 35 42-80 4-38 (219)
69 2ehh_A DHDPS, dihydrodipicolin 70.9 32 0.0011 26.0 9.1 109 54-169 19-133 (294)
70 3tvs_A Cryptochrome-1; circadi 70.5 5.3 0.00018 33.3 4.7 86 49-138 13-107 (538)
71 2oq2_A Phosphoadenosine phosph 70.4 14 0.00049 27.4 6.7 38 41-79 41-78 (261)
72 2yxg_A DHDPS, dihydrodipicolin 70.0 31 0.001 26.0 8.6 109 54-169 19-133 (289)
73 1kor_A Argininosuccinate synth 68.8 25 0.00087 28.0 8.2 36 42-80 1-36 (400)
74 1o5k_A DHDPS, dihydrodipicolin 68.7 32 0.0011 26.3 8.5 126 39-169 12-145 (306)
75 2v9d_A YAGE; dihydrodipicolini 68.2 35 0.0012 26.5 8.7 111 54-169 50-164 (343)
76 1nu0_A Hypothetical protein YQ 67.4 5.7 0.00019 26.8 3.6 56 117-173 40-99 (138)
77 1sbz_A Probable aromatic acid 66.4 12 0.0004 26.9 5.3 35 43-77 2-36 (197)
78 1wpw_A 3-isopropylmalate dehyd 65.6 15 0.00052 28.7 6.1 79 50-138 142-220 (336)
79 2i2x_B MTAC, methyltransferase 65.1 36 0.0012 25.2 8.0 69 98-169 143-211 (258)
80 1np7_A DNA photolyase; protein 63.3 23 0.00078 29.0 7.1 112 49-170 15-137 (489)
81 3tqi_A GMP synthase [glutamine 63.3 9 0.00031 31.8 4.7 88 42-139 231-339 (527)
82 4ds3_A Phosphoribosylglycinami 62.8 40 0.0014 24.3 8.8 84 42-140 8-96 (209)
83 3fy4_A 6-4 photolyase; DNA rep 62.1 8.2 0.00028 32.2 4.2 84 49-139 14-112 (537)
84 3k32_A Uncharacterized protein 61.0 41 0.0014 23.8 8.3 37 41-81 6-42 (203)
85 1xky_A Dihydrodipicolinate syn 60.8 52 0.0018 24.9 11.6 128 37-169 9-145 (301)
86 2j07_A Deoxyribodipyrimidine p 60.8 22 0.00074 28.5 6.4 106 52-171 14-122 (420)
87 3ecs_A Translation initiation 60.4 56 0.0019 25.2 9.3 107 44-172 124-233 (315)
88 3si9_A DHDPS, dihydrodipicolin 60.1 56 0.0019 25.0 8.6 127 38-169 20-155 (315)
89 2j4d_A Cryptochrome 3, cryptoc 59.9 31 0.0011 28.5 7.4 91 42-139 40-144 (525)
90 1p3y_1 MRSD protein; flavoprot 59.9 11 0.00036 27.0 4.0 111 42-170 9-123 (194)
91 1t9k_A Probable methylthioribo 59.2 56 0.0019 25.5 8.4 63 102-170 204-269 (347)
92 3d0c_A Dihydrodipicolinate syn 58.1 55 0.0019 25.0 8.1 81 85-169 62-144 (314)
93 1owl_A Photolyase, deoxyribodi 58.0 33 0.0011 28.0 7.2 110 52-171 15-130 (484)
94 1ccw_A Protein (glutamate muta 57.7 38 0.0013 22.3 7.5 42 99-141 24-65 (137)
95 1qv9_A F420-dependent methylen 57.7 19 0.00066 26.8 5.0 46 120-170 54-99 (283)
96 3qi7_A Putative transcriptiona 57.1 68 0.0023 25.4 8.5 93 43-140 14-121 (371)
97 3flu_A DHDPS, dihydrodipicolin 56.8 61 0.0021 24.5 11.1 126 39-169 6-140 (297)
98 2vc6_A MOSA, dihydrodipicolina 55.8 63 0.0022 24.3 8.1 111 54-169 19-133 (292)
99 2e0i_A 432AA long hypothetical 55.8 24 0.00081 28.6 5.9 106 54-171 15-127 (440)
100 1qzu_A Hypothetical protein MD 55.5 11 0.00036 27.3 3.4 37 41-77 19-55 (206)
101 2ojp_A DHDPS, dihydrodipicolin 55.3 64 0.0022 24.3 8.0 109 54-169 20-134 (292)
102 1vhx_A Putative holliday junct 54.8 6.2 0.00021 27.0 2.0 56 117-173 42-101 (150)
103 3lqk_A Dipicolinate synthase s 54.4 14 0.00046 26.6 3.8 36 41-77 7-43 (201)
104 2fzv_A Putative arsenical resi 54.1 68 0.0023 24.2 9.8 87 41-127 58-147 (279)
105 2rfg_A Dihydrodipicolinate syn 54.1 69 0.0023 24.2 8.4 111 54-169 19-133 (297)
106 1w0d_A 3-isopropylmalate dehyd 54.0 43 0.0015 26.1 6.9 81 49-138 151-232 (337)
107 1vl2_A Argininosuccinate synth 54.0 85 0.0029 25.3 9.3 38 39-80 12-49 (421)
108 3a5f_A Dihydrodipicolinate syn 52.8 71 0.0024 24.0 8.1 112 53-169 19-134 (291)
109 1t5o_A EIF2BD, translation ini 52.8 66 0.0022 25.2 7.8 64 102-171 202-267 (351)
110 2r8w_A AGR_C_1641P; APC7498, d 52.5 78 0.0027 24.4 9.8 111 54-169 53-167 (332)
111 1mvl_A PPC decarboxylase athal 52.1 21 0.00073 25.7 4.6 35 41-77 19-53 (209)
112 1f6k_A N-acetylneuraminate lya 52.1 73 0.0025 24.0 9.0 109 54-169 22-137 (293)
113 2pju_A Propionate catabolism o 52.0 66 0.0022 23.4 8.6 63 97-172 27-92 (225)
114 1vlc_A 3-isopropylmalate dehyd 51.9 48 0.0016 26.2 6.8 79 50-138 172-251 (366)
115 3nbk_A Phosphopantetheine aden 51.7 59 0.002 22.7 8.6 96 39-146 19-117 (177)
116 2q5c_A NTRC family transcripti 51.6 60 0.0021 22.9 8.5 48 112-172 32-80 (196)
117 2rbg_A Putative uncharacterize 51.5 47 0.0016 21.6 10.6 92 41-139 3-95 (126)
118 3daq_A DHDPS, dihydrodipicolin 51.1 56 0.0019 24.6 7.0 113 54-169 21-135 (292)
119 2yxb_A Coenzyme B12-dependent 50.8 56 0.0019 22.2 6.6 23 117-139 56-78 (161)
120 4f3r_A Phosphopantetheine aden 50.5 47 0.0016 22.7 6.0 94 39-145 3-99 (162)
121 3da8_A Probable 5'-phosphoribo 50.4 68 0.0023 23.1 8.0 84 41-141 12-100 (215)
122 2a0u_A Initiation factor 2B; S 50.3 93 0.0032 24.6 9.5 64 102-170 233-298 (383)
123 1xrs_A D-lysine 5,6-aminomutas 49.8 70 0.0024 26.0 7.4 48 107-154 151-201 (516)
124 3u1h_A 3-isopropylmalate dehyd 49.7 53 0.0018 26.2 6.8 79 50-138 184-263 (390)
125 3h5i_A Response regulator/sens 49.5 47 0.0016 21.0 8.3 54 116-173 36-89 (140)
126 3cpr_A Dihydrodipicolinate syn 49.1 84 0.0029 23.8 10.1 109 54-169 35-149 (304)
127 3nbm_A PTS system, lactose-spe 48.9 23 0.00077 22.7 3.9 36 130-172 53-88 (108)
128 3mcu_A Dipicolinate synthase, 48.3 20 0.00068 25.9 3.9 36 41-77 5-41 (207)
129 3vmk_A 3-isopropylmalate dehyd 48.2 47 0.0016 26.3 6.3 78 51-138 178-256 (375)
130 2o8v_A Phosphoadenosine phosph 48.0 78 0.0027 23.1 10.0 34 42-79 46-79 (252)
131 3tqr_A Phosphoribosylglycinami 48.0 75 0.0026 22.9 9.1 83 42-140 6-93 (215)
132 1x0l_A Homoisocitrate dehydrog 47.8 49 0.0017 25.8 6.2 82 49-138 141-223 (333)
133 3pm6_A Putative fructose-bisph 47.5 17 0.00057 28.1 3.5 57 111-168 32-88 (306)
134 2pg3_A Queuosine biosynthesis 47.3 75 0.0026 22.7 12.3 35 42-80 3-37 (232)
135 3na8_A Putative dihydrodipicol 46.9 94 0.0032 23.7 7.8 126 41-169 25-157 (315)
136 1gvf_A Tagatose-bisphosphate a 46.8 15 0.00053 27.9 3.2 57 111-168 23-80 (286)
137 2yvk_A Methylthioribose-1-phos 46.8 35 0.0012 27.0 5.4 63 102-170 229-294 (374)
138 2ywr_A Phosphoribosylglycinami 46.4 79 0.0027 22.7 8.8 22 119-140 69-90 (216)
139 3oc6_A 6-phosphogluconolactona 46.1 85 0.0029 23.0 7.4 122 42-170 39-178 (248)
140 2r91_A 2-keto-3-deoxy-(6-phosp 46.0 91 0.0031 23.3 7.6 47 122-169 82-129 (286)
141 2vzf_A NADH-dependent FMN redu 45.9 60 0.0021 22.5 6.2 39 42-80 3-45 (197)
142 1cnz_A IPMDH, IMDH, protein (3 45.8 68 0.0023 25.2 6.9 80 49-138 167-247 (363)
143 1dnp_A DNA photolyase; DNA rep 45.8 39 0.0013 27.5 5.7 81 55-139 16-104 (471)
144 3b4u_A Dihydrodipicolinate syn 45.4 95 0.0033 23.3 8.4 111 54-169 22-140 (294)
145 3nv7_A Phosphopantetheine aden 45.3 70 0.0024 21.8 6.2 92 41-145 2-97 (157)
146 1vbk_A Hypothetical protein PH 45.1 99 0.0034 23.5 10.6 84 41-140 179-265 (307)
147 3fni_A Putative diflavin flavo 45.1 65 0.0022 21.6 6.1 35 43-77 6-41 (159)
148 1a05_A IPMDH, IMDH, 3-isopropy 45.0 80 0.0027 24.8 7.1 79 50-138 163-242 (358)
149 3l21_A DHDPS, dihydrodipicolin 44.8 1E+02 0.0034 23.4 9.3 111 54-169 34-148 (304)
150 3p9x_A Phosphoribosylglycinami 44.8 85 0.0029 22.6 10.0 86 41-141 2-92 (211)
151 3k9w_A Phosphopantetheine aden 44.6 79 0.0027 22.2 8.5 94 39-145 20-117 (187)
152 3q94_A Fructose-bisphosphate a 44.5 25 0.00085 26.8 4.0 57 111-168 26-86 (288)
153 3e96_A Dihydrodipicolinate syn 44.4 88 0.003 23.8 7.3 110 54-169 31-144 (316)
154 3eb2_A Putative dihydrodipicol 43.7 61 0.0021 24.5 6.2 83 86-171 55-139 (300)
155 3udu_A 3-isopropylmalate dehyd 43.4 65 0.0022 25.4 6.4 77 52-138 167-244 (361)
156 3ayv_A Putative uncharacterize 43.3 73 0.0025 22.8 6.5 76 54-130 74-154 (254)
157 2y3z_A 3-isopropylmalate dehyd 43.0 81 0.0028 24.8 6.9 77 52-138 163-240 (359)
158 2h31_A Multifunctional protein 42.6 75 0.0025 25.6 6.7 62 101-171 287-353 (425)
159 1w2w_B 5-methylthioribose-1-ph 42.4 14 0.00048 26.3 2.3 64 103-171 27-94 (191)
160 1jq5_A Glycerol dehydrogenase; 42.1 1E+02 0.0035 23.9 7.5 14 122-135 78-91 (370)
161 2o2z_A Hypothetical protein; s 42.0 31 0.0011 26.7 4.3 52 117-172 167-220 (323)
162 3elf_A Fructose-bisphosphate a 41.9 24 0.00082 27.7 3.7 61 111-172 26-97 (349)
163 1meo_A Phosophoribosylglycinam 41.7 94 0.0032 22.2 9.7 84 42-140 1-89 (209)
164 3p52_A NH(3)-dependent NAD(+) 41.7 87 0.003 23.0 6.7 37 41-80 26-62 (249)
165 3hly_A Flavodoxin-like domain; 41.6 77 0.0026 21.2 6.9 21 119-141 42-62 (161)
166 3rjz_A N-type ATP pyrophosphat 41.4 63 0.0022 23.7 5.8 90 42-139 5-99 (237)
167 3flk_A Tartrate dehydrogenase/ 41.3 64 0.0022 25.4 6.1 81 50-138 164-245 (364)
168 2p0y_A Hypothetical protein LP 40.5 26 0.0009 27.4 3.7 51 117-171 177-229 (341)
169 1y80_A Predicted cobalamin bin 40.3 83 0.0029 22.1 6.3 70 98-170 108-179 (210)
170 3blx_A Isocitrate dehydrogenas 40.2 1.3E+02 0.0044 23.5 7.6 83 49-138 154-237 (349)
171 3blx_B Isocitrate dehydrogenas 40.1 74 0.0025 25.0 6.2 81 49-138 160-244 (354)
172 2ppv_A Uncharacterized protein 39.8 30 0.001 26.9 3.9 52 117-172 166-219 (332)
173 1o97_D Electron transferring f 39.5 1.3E+02 0.0044 23.1 8.7 74 52-140 16-97 (320)
174 1xng_A NH(3)-dependent NAD(+) 39.1 78 0.0027 23.3 6.1 36 41-79 25-60 (268)
175 3nwp_A 6-phosphogluconolactona 39.0 1.1E+02 0.0037 22.2 7.7 106 42-152 37-151 (233)
176 3tx2_A Probable 6-phosphogluco 39.0 1.1E+02 0.0039 22.4 8.9 122 42-170 39-180 (251)
177 1u3d_A Cryptochrome 1 apoprote 38.4 1.6E+02 0.0055 24.0 9.4 112 49-171 21-139 (509)
178 1qtw_A Endonuclease IV; DNA re 37.6 1.1E+02 0.0039 22.0 7.8 73 54-129 87-168 (285)
179 3a11_A Translation initiation 37.2 34 0.0012 26.6 3.9 62 102-170 188-251 (338)
180 3n53_A Response regulator rece 37.1 77 0.0026 19.9 8.6 51 119-173 35-87 (140)
181 3r8w_A 3-isopropylmalate dehyd 36.8 1.2E+02 0.0043 24.2 7.1 78 51-138 206-284 (405)
182 4f2d_A L-arabinose isomerase; 36.5 1.8E+02 0.0061 23.9 11.4 80 83-170 20-105 (500)
183 3lwd_A 6-phosphogluconolactona 36.5 1.2E+02 0.0041 21.9 8.1 105 42-152 33-147 (226)
184 3o1l_A Formyltetrahydrofolate 36.2 1.4E+02 0.0048 22.7 9.9 84 41-141 105-192 (302)
185 3m5v_A DHDPS, dihydrodipicolin 36.2 1.4E+02 0.0047 22.5 11.1 110 54-169 26-141 (301)
186 3tak_A DHDPS, dihydrodipicolin 35.2 1.4E+02 0.0048 22.3 9.4 111 54-169 20-134 (291)
187 1uf3_A Hypothetical protein TT 34.9 79 0.0027 21.9 5.4 17 121-137 23-39 (228)
188 2q7x_A UPF0052 protein SP_1565 34.3 29 0.001 26.9 3.1 51 117-171 173-225 (326)
189 3lou_A Formyltetrahydrofolate 34.2 1.5E+02 0.0051 22.4 10.4 84 41-141 95-182 (292)
190 3ezx_A MMCP 1, monomethylamine 33.8 69 0.0024 22.9 4.9 67 98-169 112-184 (215)
191 1dos_A Aldolase class II; lyas 33.7 36 0.0012 26.8 3.5 61 111-172 34-111 (358)
192 3gxq_A Putative regulator of t 33.6 54 0.0018 17.2 3.1 26 108-133 11-37 (54)
193 3bul_A Methionine synthase; tr 33.3 84 0.0029 26.4 5.9 71 97-170 117-187 (579)
194 3cu5_A Two component transcrip 33.2 92 0.0032 19.6 5.5 49 120-172 39-87 (141)
195 1b93_A Protein (methylglyoxal 32.8 1.2E+02 0.004 20.7 5.7 104 41-166 11-117 (152)
196 3ico_A 6PGL, 6-phosphogluconol 32.3 1.5E+02 0.0053 21.9 9.1 121 42-169 55-195 (268)
197 4dad_A Putative pilus assembly 32.1 96 0.0033 19.5 6.2 23 117-139 53-76 (146)
198 3cu2_A Ribulose-5-phosphate 3- 31.9 1.5E+02 0.0051 21.6 6.5 49 89-139 169-219 (237)
199 1f76_A Dihydroorotate dehydrog 31.9 1.7E+02 0.0057 22.2 10.8 34 106-139 211-247 (336)
200 2isw_A Putative fructose-1,6-b 31.7 56 0.0019 25.3 4.2 57 111-168 23-81 (323)
201 3qze_A DHDPS, dihydrodipicolin 31.4 1.7E+02 0.0059 22.2 9.1 113 54-169 42-156 (314)
202 1vdd_A Recombination protein R 31.4 68 0.0023 23.5 4.4 35 41-75 134-168 (228)
203 3obi_A Formyltetrahydrofolate 31.3 1.7E+02 0.0057 22.1 6.8 83 41-140 89-176 (288)
204 1x92_A APC5045, phosphoheptose 31.0 74 0.0025 21.9 4.6 36 41-77 113-148 (199)
205 2xdq_A Light-independent proto 30.9 34 0.0012 27.6 3.1 26 116-141 113-139 (460)
206 2yva_A DNAA initiator-associat 30.8 76 0.0026 21.8 4.6 36 41-77 109-144 (196)
207 3dcm_X AdoMet, uncharacterized 30.6 1.4E+02 0.0049 21.1 10.4 56 114-171 87-142 (192)
208 2xw6_A MGS, methylglyoxal synt 30.6 93 0.0032 20.7 4.7 104 41-166 3-109 (134)
209 3cg4_A Response regulator rece 30.5 1E+02 0.0034 19.2 8.2 51 119-173 40-92 (142)
210 3n9r_A Fructose-bisphosphate a 30.5 48 0.0016 25.5 3.7 56 112-168 23-80 (307)
211 1rvg_A Fructose-1,6-bisphospha 30.3 45 0.0015 25.6 3.5 56 111-168 22-78 (305)
212 3inp_A D-ribulose-phosphate 3- 30.3 50 0.0017 24.4 3.7 47 91-139 179-225 (246)
213 2ark_A Flavodoxin; FMN, struct 30.0 1.3E+02 0.0045 20.5 7.1 38 42-79 5-44 (188)
214 2amj_A Modulator of drug activ 30.0 1.4E+02 0.0049 20.8 8.4 23 56-78 34-56 (204)
215 3o3m_A Alpha subunit 2-hydroxy 29.7 41 0.0014 26.8 3.3 57 117-174 321-377 (408)
216 3txv_A Probable tagatose 6-pho 29.5 71 0.0024 26.0 4.6 52 117-169 32-92 (450)
217 2goy_A Adenosine phosphosulfat 29.4 93 0.0032 23.1 5.1 33 42-79 55-87 (275)
218 2wkj_A N-acetylneuraminate lya 29.4 1.8E+02 0.0062 21.9 9.3 110 54-169 30-145 (303)
219 3nhm_A Response regulator; pro 29.1 87 0.003 19.3 4.4 19 121-139 38-56 (133)
220 2iv0_A Isocitrate dehydrogenas 29.0 2.2E+02 0.0076 22.8 8.7 28 52-79 197-225 (412)
221 3eod_A Protein HNR; response r 28.8 1E+02 0.0035 18.8 7.5 19 121-139 42-60 (130)
222 2d1c_A Isocitrate dehydrogenas 28.5 1.3E+02 0.0044 24.8 6.0 80 51-138 164-244 (496)
223 3hdg_A Uncharacterized protein 28.4 1.1E+02 0.0037 19.0 5.6 48 120-171 41-88 (137)
224 3i65_A Dihydroorotate dehydrog 28.3 2.3E+02 0.0078 22.7 11.2 35 107-141 269-307 (415)
225 3to5_A CHEY homolog; alpha(5)b 28.3 1.2E+02 0.0043 19.6 6.4 47 122-172 49-97 (134)
226 3ty4_A Probable homoisocitrate 27.9 1.2E+02 0.0041 23.9 5.6 80 50-138 160-256 (366)
227 3auf_A Glycinamide ribonucleot 27.8 1.7E+02 0.0059 21.1 9.5 22 119-140 90-111 (229)
228 3n0v_A Formyltetrahydrofolate 27.8 1.9E+02 0.0066 21.7 10.8 84 41-141 90-177 (286)
229 2l2q_A PTS system, cellobiose- 27.7 1.1E+02 0.0039 19.0 6.0 35 129-170 50-84 (109)
230 3iwt_A 178AA long hypothetical 27.5 1.5E+02 0.005 20.2 5.7 40 98-137 45-88 (178)
231 2nuw_A 2-keto-3-deoxygluconate 27.5 1.9E+02 0.0066 21.5 6.9 47 122-169 83-130 (288)
232 1w3i_A EDA, 2-keto-3-deoxy glu 27.3 2E+02 0.0067 21.6 7.0 47 122-169 83-130 (293)
233 2gkg_A Response regulator homo 27.2 1.1E+02 0.0036 18.4 6.2 46 120-168 39-86 (127)
234 1tk9_A Phosphoheptose isomeras 27.0 98 0.0033 20.9 4.6 36 41-77 110-145 (188)
235 3grc_A Sensor protein, kinase; 27.0 1.2E+02 0.004 18.9 6.0 49 119-171 39-89 (140)
236 3dff_A Teicoplanin pseudoaglyc 26.9 1.9E+02 0.0066 21.4 10.2 50 118-168 136-185 (273)
237 1h5y_A HISF; histidine biosynt 26.9 1.3E+02 0.0043 21.3 5.4 50 119-169 156-205 (253)
238 4aoy_A Isocitrate dehydrogenas 26.8 1.3E+02 0.0045 24.0 5.7 28 52-79 185-212 (402)
239 3ctl_A D-allulose-6-phosphate 26.8 90 0.0031 22.7 4.5 48 90-139 150-198 (231)
240 3u7r_A NADPH-dependent FMN red 26.5 89 0.0031 21.9 4.3 40 40-80 1-43 (190)
241 3us8_A Isocitrate dehydrogenas 26.3 1.5E+02 0.0052 23.8 6.0 29 51-79 207-235 (427)
242 1vmd_A MGS, methylglyoxal synt 26.1 1.5E+02 0.0052 20.8 5.3 102 42-166 28-133 (178)
243 3vk5_A MOEO5; TIM barrel, tran 26.0 1E+02 0.0035 23.4 4.8 46 122-169 58-104 (286)
244 2qxy_A Response regulator; reg 25.9 1.2E+02 0.0042 18.8 7.1 47 120-171 38-84 (142)
245 3fvw_A Putative NAD(P)H-depend 25.9 1.6E+02 0.0056 20.2 8.1 38 41-79 2-42 (192)
246 1m3s_A Hypothetical protein YC 25.6 1.1E+02 0.0037 20.7 4.6 36 41-77 79-114 (186)
247 3sho_A Transcriptional regulat 25.4 1E+02 0.0034 20.9 4.4 35 42-77 88-122 (187)
248 3r7f_A Aspartate carbamoyltran 25.3 1.1E+02 0.0036 23.5 4.8 41 116-166 78-118 (304)
249 2xhz_A KDSD, YRBH, arabinose 5 25.0 1E+02 0.0035 20.7 4.4 36 41-77 96-131 (183)
250 2uxq_A Isocitrate dehydrogenas 24.8 1.6E+02 0.0054 23.5 5.9 29 51-79 183-211 (402)
251 2xbl_A Phosphoheptose isomeras 24.8 1.1E+02 0.0038 20.8 4.6 36 41-77 116-151 (198)
252 4e7p_A Response regulator; DNA 24.8 1.4E+02 0.0047 18.9 7.1 17 123-139 59-75 (150)
253 3nd5_A Phosphopantetheine aden 24.7 1.7E+02 0.0059 20.0 8.2 93 41-145 2-98 (171)
254 1hqs_A Isocitrate dehydrogenas 24.6 2.7E+02 0.0093 22.3 8.0 29 49-77 192-221 (423)
255 1zor_A Isocitrate dehydrogenas 24.5 43 0.0015 26.8 2.5 29 51-79 182-210 (399)
256 2qfy_A Isocitrate dehydrogenas 24.0 1.7E+02 0.0057 23.6 5.9 29 51-79 202-230 (427)
257 3f2v_A General stress protein 24.0 94 0.0032 21.8 4.1 23 57-79 18-40 (192)
258 1vim_A Hypothetical protein AF 23.7 99 0.0034 21.5 4.2 37 41-78 89-125 (200)
259 3tdn_A FLR symmetric alpha-bet 23.7 1.5E+02 0.0051 21.3 5.3 47 121-168 39-85 (247)
260 1jeo_A MJ1247, hypothetical pr 23.6 1.1E+02 0.0037 20.6 4.3 36 41-77 82-117 (180)
261 2fiq_A Putative tagatose 6-pho 23.6 1.3E+02 0.0044 24.2 5.1 47 117-164 25-78 (420)
262 3hn6_A Glucosamine-6-phosphate 23.5 2.4E+02 0.0081 21.2 6.7 106 43-151 55-172 (289)
263 3h5d_A DHDPS, dihydrodipicolin 23.3 2.4E+02 0.0083 21.3 7.9 82 85-169 57-141 (311)
264 2xdq_B Light-independent proto 23.2 66 0.0023 26.4 3.5 52 119-171 77-128 (511)
265 2ohh_A Type A flavoprotein FPR 23.2 2.5E+02 0.0087 21.5 10.2 89 43-141 227-318 (404)
266 3t1i_A Double-strand break rep 23.2 1.5E+02 0.005 23.9 5.5 17 159-176 137-153 (431)
267 3eul_A Possible nitrate/nitrit 23.0 1.5E+02 0.0051 18.7 8.1 46 121-170 52-97 (152)
268 3d6n_B Aspartate carbamoyltran 22.8 1.8E+02 0.0061 22.1 5.6 42 116-167 76-118 (291)
269 2au3_A DNA primase; zinc ribbo 22.8 2.3E+02 0.0078 22.3 6.5 36 42-77 288-323 (407)
270 3fkr_A L-2-keto-3-deoxyarabona 22.7 2.5E+02 0.0085 21.2 7.9 111 54-170 27-145 (309)
271 2zay_A Response regulator rece 22.7 1.5E+02 0.0051 18.5 6.4 49 119-171 41-91 (147)
272 3l6u_A ABC-type sugar transpor 22.3 2.2E+02 0.0075 20.4 9.6 17 122-138 81-97 (293)
273 3kws_A Putative sugar isomeras 22.1 2.3E+02 0.0078 20.5 7.8 78 54-132 102-191 (287)
274 3cnb_A DNA-binding response re 22.1 1.5E+02 0.005 18.3 5.6 20 120-139 44-63 (143)
275 3qm3_A Fructose-bisphosphate a 22.0 51 0.0017 25.9 2.5 60 111-171 37-108 (357)
276 3trj_A Phosphoheptose isomeras 21.9 1.4E+02 0.0047 20.9 4.6 38 41-79 114-151 (201)
277 3cvj_A Putative phosphoheptose 21.8 1.1E+02 0.0037 22.0 4.2 36 41-77 108-143 (243)
278 2i2w_A Phosphoheptose isomeras 21.5 1.1E+02 0.0039 21.3 4.2 36 41-77 131-166 (212)
279 2b4a_A BH3024; flavodoxin-like 21.2 1.5E+02 0.0053 18.2 7.1 48 121-172 50-99 (138)
280 3b0p_A TRNA-dihydrouridine syn 21.1 2.9E+02 0.0098 21.2 10.7 126 42-170 58-205 (350)
281 3rpe_A MDAB, modulator of drug 20.9 2.4E+02 0.0081 20.2 7.3 40 40-79 24-70 (218)
282 4drs_A Pyruvate kinase; glycol 20.9 2E+02 0.0067 23.9 5.8 45 118-171 412-456 (526)
283 3l23_A Sugar phosphate isomera 20.8 2.6E+02 0.0088 20.6 6.3 59 53-112 105-165 (303)
284 2is8_A Molybdopterin biosynthe 20.7 2E+02 0.0069 19.3 5.8 8 163-170 123-130 (164)
285 3o1i_D Periplasmic protein TOR 20.6 2.4E+02 0.0082 20.2 9.3 58 104-169 33-94 (304)
286 1a3w_A Pyruvate kinase; allost 20.6 2E+02 0.0067 23.7 5.7 46 118-172 382-427 (500)
287 3hv2_A Response regulator/HD d 20.5 1.7E+02 0.0059 18.5 7.9 17 123-139 51-67 (153)
288 2f6u_A GGGPS, (S)-3-O-geranylg 20.3 1.1E+02 0.0038 22.4 3.9 49 119-171 22-70 (234)
289 3j21_Z 50S ribosomal protein L 20.3 1.6E+02 0.0054 18.0 4.6 18 119-136 46-63 (99)
290 1lwd_A Isocitrate dehydrogenas 20.2 58 0.002 26.1 2.5 28 52-79 187-214 (413)
291 3m9w_A D-xylose-binding peripl 20.2 2.6E+02 0.0087 20.3 10.2 79 51-140 14-93 (313)
292 3ouz_A Biotin carboxylase; str 20.2 3.2E+02 0.011 21.4 7.8 35 39-78 4-38 (446)
293 3v7e_A Ribosome-associated pro 20.2 60 0.0021 19.3 2.0 19 119-137 42-60 (82)
294 1y5e_A Molybdenum cofactor bio 20.2 2.1E+02 0.0072 19.3 6.1 8 163-170 135-142 (169)
295 2yvq_A Carbamoyl-phosphate syn 20.1 95 0.0032 20.6 3.3 98 44-166 27-129 (143)
296 3gg8_A Pyruvate kinase; malari 20.0 2.2E+02 0.0076 23.5 5.9 45 118-171 397-441 (511)
297 2xgg_A Microneme protein 2; A/ 20.0 1.5E+02 0.0052 19.8 4.4 15 50-64 96-110 (178)
No 1
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.95 E-value=1.1e-26 Score=164.03 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=98.2
Q ss_pred CCCCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCch-------------hhHHHHHHHHHHHHHHHHhh
Q 030208 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN-------------QIVYDMSQGLMEKLAIEAMD 103 (181)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~-------------~~~~~~~~~~l~~~~~~~~~ 103 (181)
.|+++++||||+|+++.+..++++|..+|+..+++|+++||.+.... ....+...+..++.+++..+
T Consensus 2 ~m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (150)
T 3tnj_A 2 HMSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGN 81 (150)
T ss_dssp --CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999875321 00112222233333333333
Q ss_pred hcCce-EEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 104 VAMVR-TKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 104 ~~~i~-~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
..++. +++.+..|++.+.|++++++.++||||||+++++.+. +++||++++++++++ |||++||+.+
T Consensus 82 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~-~pVlvv~~~~ 149 (150)
T 3tnj_A 82 TLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAK-CDVLAVRLRD 149 (150)
T ss_dssp HHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCS-SEEEEEECCC
T ss_pred HcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCC-CCEEEEeCCC
Confidence 33555 4667788999999999999999999999999999999 999999999999999 9999999864
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.94 E-value=4.5e-26 Score=160.17 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=108.6
Q ss_pred CCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchh-------------hHHHHHHHHHHHHHHHHhhhc
Q 030208 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-------------IVYDMSQGLMEKLAIEAMDVA 105 (181)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~ 105 (181)
+|+++||||+|+++.+..++++|..+|+..+++++++||.+..... ...+..++.++++. +.+...
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 81 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQ-QFVATT 81 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHH-HHHTTS
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 5789999999999999999999999999999999999998864321 11123334444433 233445
Q ss_pred Cc-eEEEEEecCChHHHHHH-HHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 106 MV-RTKARIVEGDAAKVICK-EAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 106 ~i-~~~~~~~~g~~~~~I~~-~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
++ .+++.+..|++.+.|++ ++++.++||||||+++++.+.++++||++++++++++ ||||+||
T Consensus 82 g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvV~ 146 (146)
T 3s3t_A 82 SAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAP-CNVIVIR 146 (146)
T ss_dssp SCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCS-SEEEEEC
T ss_pred CCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCC-CCEEEeC
Confidence 67 88888899999999999 9999999999999999999999999999999999999 9999997
No 3
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.94 E-value=4.1e-26 Score=160.42 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=107.8
Q ss_pred CCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCc-----------------hhhHHHHHHHHHHHHHHHHh
Q 030208 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQ-----------------NQIVYDMSQGLMEKLAIEAM 102 (181)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~-----------------~~~~~~~~~~~l~~~~~~~~ 102 (181)
|+++||||+|+++.+..++++|..+|+..+++++++||.+... .....+..++.++++. +..
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 79 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAK-TRA 79 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHH-HHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHH-HHH
Confidence 6899999999999999999999999999999999999987542 1111234455555533 344
Q ss_pred hhcCceE---EEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEE
Q 030208 103 DVAMVRT---KARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (181)
Q Consensus 103 ~~~~i~~---~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (181)
...++++ ++.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++ |||++|
T Consensus 80 ~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvV 147 (147)
T 3hgm_A 80 TELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAH-CPVLVV 147 (147)
T ss_dssp HHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCS-SCEEEC
T ss_pred HhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCC-CCEEEC
Confidence 4456777 8888899999999999999999999999999999999999999999999999 999986
No 4
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.94 E-value=4.2e-26 Score=158.98 Aligned_cols=129 Identities=24% Similarity=0.310 Sum_probs=102.8
Q ss_pred CCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhh-------HHHHHHHHHHHHHHHHhhhcCc-eEEE
Q 030208 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI-------VYDMSQGLMEKLAIEAMDVAMV-RTKA 111 (181)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~i-~~~~ 111 (181)
|+++||||+|+++.+..++++|..+|+..+++++++||.+...... ..+...+..++.+++..+..++ ++++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 80 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDA 80 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 5799999999999999999999999999999999999987432100 0011112222223232222566 6677
Q ss_pred EEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 112 RIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 112 ~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
.+..|++.+.|++++++.++||||||+++++++.++++||++++++++++ |||++||
T Consensus 81 ~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvv~ 137 (137)
T 2z08_A 81 LLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAP-CPVLLVR 137 (137)
T ss_dssp EEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCS-SCEEEEC
T ss_pred EEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCC-CCEEEeC
Confidence 77889999999999999999999999999999999999999999999999 9999996
No 5
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.94 E-value=1.9e-25 Score=159.80 Aligned_cols=131 Identities=22% Similarity=0.316 Sum_probs=107.4
Q ss_pred CCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCC-----c--hh------h-H---------H----HHHHH
Q 030208 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV-----Q--NQ------I-V---------Y----DMSQG 92 (181)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~-----~--~~------~-~---------~----~~~~~ 92 (181)
|+++||||+|+++.+..++++|.++|+..+++++++||.+.. . .. . . . +..++
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999999998743 1 00 0 0 0 12223
Q ss_pred HHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 93 LMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 93 ~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
.++++. +.+...++++++.+..|++.+.|+++|++.++||||||++++++++++++||++++++++++ |||+|||+..
T Consensus 84 ~l~~~~-~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~-~pVlvv~~~~ 161 (162)
T 1mjh_A 84 KMENIK-KELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSN-KPVLVVKRKN 161 (162)
T ss_dssp HHHHHH-HHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCC-SCEEEECCCC
T ss_pred HHHHHH-HHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCC-CCEEEEeCCC
Confidence 333322 22334578888888889999999999999999999999999999999999999999999999 9999999754
No 6
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.94 E-value=2.7e-25 Score=160.29 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=107.9
Q ss_pred CCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchh------------------h----HHHHHHHHHHH
Q 030208 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------------------I----VYDMSQGLMEK 96 (181)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~------------------~----~~~~~~~~l~~ 96 (181)
.|+++||||+|+++.+..++++|..+|+..+++|+++||.+..... . ..+..++.+++
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQE 82 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999999998753210 0 11233444444
Q ss_pred HHHHHhhhcCceEEE--EEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCCCC
Q 030208 97 LAIEAMDVAMVRTKA--RIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGTS 174 (181)
Q Consensus 97 ~~~~~~~~~~i~~~~--~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (181)
+.+ .+...++++++ .+..|++.+.|+++|++.++||||||+++++++.++++||++++|+++++ |||||||.....
T Consensus 83 ~~~-~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~-~PVlvv~~~~~~ 160 (170)
T 2dum_A 83 KAE-EVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTK-KPVLIIKEVDEN 160 (170)
T ss_dssp HHH-HHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCS-SCEEEECCCCCC
T ss_pred HHH-HHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCC-CCEEEEccCCcc
Confidence 333 23334677777 78889999999999999999999999999999999999999999999999 999999976654
No 7
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.94 E-value=2e-25 Score=159.16 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=108.1
Q ss_pred cCCCCCCCeEEEEEcC-ChhhHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceEEE
Q 030208 35 TGERRRGRDILIAVDH-GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKA 111 (181)
Q Consensus 35 ~~~~~~~~~Ilv~vd~-s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~i~~~~ 111 (181)
..+..|+++||||+|+ ++.+..++++|..+|+..+++|+++||.+.... ....+..++.++++. +.+...++.++.
T Consensus 18 ~~~~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~g~~~~~ 96 (155)
T 3dlo_A 18 YFQGMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAV-SIIRKEGAEGEE 96 (155)
T ss_dssp ----CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHH-HHHHHTTCCEEE
T ss_pred cccccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHH-HHHHhcCCCceE
Confidence 3455789999999999 999999999999999999999999999875432 222344555566543 334444566554
Q ss_pred --EEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 112 --RIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 112 --~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
.+..|++.+.|+++|++.++||||||+++++++.++++||++++++++++ ||||+|+
T Consensus 97 ~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~-~PVLvVr 155 (155)
T 3dlo_A 97 HLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKAN-KPVICIK 155 (155)
T ss_dssp EEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCS-SCEEEEC
T ss_pred EEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCC-CCEEEeC
Confidence 35568999999999999999999999999999999999999999999999 9999986
No 8
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.93 E-value=6.8e-25 Score=156.03 Aligned_cols=130 Identities=20% Similarity=0.254 Sum_probs=106.8
Q ss_pred CCCCCCeEEEEEc--CChhhHHHHHHHHHHhccCCCEEEEEEEecCCchh-----------hHHHHHHHHHHHHHHHHhh
Q 030208 37 ERRRGRDILIAVD--HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-----------IVYDMSQGLMEKLAIEAMD 103 (181)
Q Consensus 37 ~~~~~~~Ilv~vd--~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~-----------~~~~~~~~~l~~~~~~~~~ 103 (181)
.+.++++||||+| +++.+..++++|..+|+..+++++++||.+..... ...+..++.++++.+ .+.
T Consensus 11 ~~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 89 (156)
T 3fg9_A 11 EPLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQ-LAE 89 (156)
T ss_dssp SCCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3467899999999 99999999999999999999999999998865311 112334444555433 334
Q ss_pred hcCc-eEEEEEec-CChHHHHHHH-HHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 104 VAMV-RTKARIVE-GDAAKVICKE-AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 104 ~~~i-~~~~~~~~-g~~~~~I~~~-a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
..++ .+++.+.. |++.++|+++ |++.++||||||++++++++ .++||++++++++++ ||||+||
T Consensus 90 ~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~-~PVlvV~ 156 (156)
T 3fg9_A 90 QRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAP-ISVIVVR 156 (156)
T ss_dssp HHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCS-SEEEEEC
T ss_pred HcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCC-CCEEEeC
Confidence 4567 48888888 9999999999 99999999999999999997 489999999999999 9999996
No 9
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.93 E-value=2e-25 Score=160.46 Aligned_cols=134 Identities=15% Similarity=0.123 Sum_probs=107.3
Q ss_pred CCCCCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEE--EEecCCch-hh-----------HHHHHHHHHHHHHHHH
Q 030208 36 GERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLV--HAVSSVQN-QI-----------VYDMSQGLMEKLAIEA 101 (181)
Q Consensus 36 ~~~~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~ll--hV~~~~~~-~~-----------~~~~~~~~l~~~~~~~ 101 (181)
....++++||||+|+++.+..++++|.++|+ .+++|+++ ||.+.... .. ..+..++.++++.+ .
T Consensus 12 ~~~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 89 (163)
T 1tq8_A 12 MSLSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKE-R 89 (163)
T ss_dssp -CCCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHH-H
T ss_pred cccccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHH-H
Confidence 4456789999999999999999999999999 99999999 88654321 00 11223444555433 3
Q ss_pred hhhcCce-EEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 102 MDVAMVR-TKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 102 ~~~~~i~-~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
+...+++ +++.+..|++.+.|+++|++.++||||||+++++.+.++++||++++|+++++ |||+|||+..
T Consensus 90 ~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~-~PVlvV~~~~ 160 (163)
T 1tq8_A 90 AHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAK-VDVLIVHTTE 160 (163)
T ss_dssp HHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTT-CEEEEECCC-
T ss_pred HHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCC-CCEEEEeCCC
Confidence 3445677 88888899999999999999999999999999999999999999999999999 9999999754
No 10
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.93 E-value=5.9e-25 Score=153.12 Aligned_cols=124 Identities=17% Similarity=0.256 Sum_probs=104.2
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHh-ccCCCEEEEEEEecCCchhhH------------H-HHHHHHHHHHHHHHhhhcC
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHL-CRLADTIHLVHAVSSVQNQIV------------Y-DMSQGLMEKLAIEAMDVAM 106 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la-~~~~a~l~llhV~~~~~~~~~------------~-~~~~~~l~~~~~~~~~~~~ 106 (181)
+++||||+|+++.+..++++|..+| +..+++++++||.+....... . +..++.++++. +.+...+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~g 79 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFS-TFFTEKG 79 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTT
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHH-HHHHHCC
Confidence 4899999999999999999999999 999999999999986542111 1 23333444433 3344467
Q ss_pred ceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 107 VRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 107 i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+++++.+..|++.+.|+++++ ++||||||+++++++.+++ ||++++++++++ ||||+||
T Consensus 80 ~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~-~pVlvv~ 138 (138)
T 3idf_A 80 INPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAP-IPVLIVK 138 (138)
T ss_dssp CCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCS-SCEEEEC
T ss_pred CCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCC-CCEEEeC
Confidence 888888999999999999999 8999999999999999999 999999999999 9999997
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.92 E-value=4.4e-24 Score=154.65 Aligned_cols=137 Identities=26% Similarity=0.488 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCh---------hhHHHHHHHHHHh-cc--CCCEEEEEEEecCCch-----------hhHH--------H
Q 030208 40 RGRDILIAVDHGP---------NSKHAFDWALIHL-CR--LADTIHLVHAVSSVQN-----------QIVY--------D 88 (181)
Q Consensus 40 ~~~~Ilv~vd~s~---------~s~~a~~~a~~la-~~--~~a~l~llhV~~~~~~-----------~~~~--------~ 88 (181)
.+++||||+|+++ .+..++++|.+++ +. .+++|+++||.+.... .... +
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 4699999999999 9999999999987 43 5899999999853211 0000 1
Q ss_pred HHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEE
Q 030208 89 MSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (181)
Q Consensus 89 ~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (181)
..++.++++. +.+...++.+++.+..|++.+.|++++++.++||||||+++++++.++++||++++|+++++ ||||||
T Consensus 84 ~~~~~l~~~~-~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~-~pVlvv 161 (175)
T 2gm3_A 84 KGLHLLEFFV-NKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAE-CPVMTI 161 (175)
T ss_dssp HHHHHHHHHH-HHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCS-SCEEEE
T ss_pred HHHHHHHHHH-HHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCC-CCEEEE
Confidence 1233344432 23344578888888899999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCCCCCCC
Q 030208 169 PGKGTSPSCI 178 (181)
Q Consensus 169 ~~~~~~~~~~ 178 (181)
|.....++..
T Consensus 162 ~~~~~~~~~~ 171 (175)
T 2gm3_A 162 KRNADETPSD 171 (175)
T ss_dssp ECCGGGSCSS
T ss_pred cCCcCCCCCC
Confidence 9876655443
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.92 E-value=3.1e-24 Score=150.23 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=100.6
Q ss_pred CeEEEEEcCChh--hHHHHHHHHHHhccCCCEEEEEEEecCCchh------------hHHHHHHHHHHHHHHHHhhhcC-
Q 030208 42 RDILIAVDHGPN--SKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------------IVYDMSQGLMEKLAIEAMDVAM- 106 (181)
Q Consensus 42 ~~Ilv~vd~s~~--s~~a~~~a~~la~~~~a~l~llhV~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~- 106 (181)
++||||+|+++. +..++++|..+|+..+++++++||.+..... ...+..++..+. +++..+..+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 80 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQ-LKEIAKKFSI 80 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHH-HHHHHTTSCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHH-HHHHHHHcCC
Confidence 899999999999 9999999999999999999999998864311 011222222222 334444333
Q ss_pred --ceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 107 --VRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 107 --i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
..+++.+..|++.+.|++++++.++||||||+++ +++.++++||++++++++++ ||||+||
T Consensus 81 ~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~-~pVlvv~ 143 (143)
T 3fdx_A 81 PEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAE-CSVLVVR 143 (143)
T ss_dssp CGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCS-SEEEEEC
T ss_pred CCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCC-CCEEEeC
Confidence 4568888899999999999999999999999995 88899999999999999999 9999997
No 13
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.92 E-value=3.7e-24 Score=166.65 Aligned_cols=151 Identities=22% Similarity=0.209 Sum_probs=116.6
Q ss_pred hhhhhhcCCCCCCcccCCcchhhhcCCCCCCCeEEEEEcCChh-------hHHHHHHHHHHhccCCCEEEEEEEecCCch
Q 030208 11 YSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPN-------SKHAFDWALIHLCRLADTIHLVHAVSSVQN 83 (181)
Q Consensus 11 ~~~r~~~~P~l~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~~-------s~~a~~~a~~la~~~~a~l~llhV~~~~~~ 83 (181)
...|...+|+|+.+... .+ .+++||||+|+++. +..++++|..+++..+++++++||.+....
T Consensus 114 ~vl~~~~~PVlvv~~~~---------~~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~ 183 (290)
T 3mt0_A 114 KLLRFAPCPVLMTKTAR---------PW-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPML 183 (290)
T ss_dssp HHHHHCSSCEEEECCCS---------CS-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC----
T ss_pred HHHhcCCCCEEEecCCC---------CC-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccc
Confidence 44577889999887421 11 47999999999998 999999999999999999999999885432
Q ss_pred h------hHHHHHHHHHHHHHHHHhhhcCce-EEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHH
Q 030208 84 Q------IVYDMSQGLMEKLAIEAMDVAMVR-TKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYC 156 (181)
Q Consensus 84 ~------~~~~~~~~~l~~~~~~~~~~~~i~-~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l 156 (181)
. ...+...+..++.+++..+..++. ++..+..|++.+.|++++++.++||||||+++++++.++++||+++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~v 263 (290)
T 3mt0_A 184 SSADPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVV 263 (290)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHH
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHH
Confidence 1 111222222222233333344553 456677899999999999999999999999999999999999999999
Q ss_pred HhcCCCccEEEEcCCC
Q 030208 157 LHHCKTAPIIVVPGKG 172 (181)
Q Consensus 157 l~~~~~~pVlvv~~~~ 172 (181)
+++++ ||||+||+.+
T Consensus 264 l~~~~-~pVLvv~~~~ 278 (290)
T 3mt0_A 264 LDTLE-SDVLVLKPDD 278 (290)
T ss_dssp HTTCS-SEEEEECCHH
T ss_pred HhcCC-CCEEEECCCC
Confidence 99999 9999998754
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.91 E-value=7.3e-24 Score=148.07 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=99.4
Q ss_pred CCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecC-Cchh-----h----H----HHHHHHHHHHHHHHHhhhc
Q 030208 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS-VQNQ-----I----V----YDMSQGLMEKLAIEAMDVA 105 (181)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~-~~~~-----~----~----~~~~~~~l~~~~~~~~~~~ 105 (181)
|+++||||+|+++.+..++++|..+|+..+++++++||.+. .... . . .+..++.+++ ..+..
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 76 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLD----LAESV 76 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHH----HHHHS
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHH----HHHHc
Confidence 57999999999999999999999999999999999999843 2100 0 0 0122333333 33334
Q ss_pred CceE-EEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 106 MVRT-KARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 106 ~i~~-~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
++.+ +..+..|++.+.|+++|++.++||||||++ ++++.+ +||++++++++++ |||++||..+
T Consensus 77 ~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~-~pVlvv~~~~ 140 (141)
T 1jmv_A 77 DYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIK-IDMLVVPLRD 140 (141)
T ss_dssp SSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCC-SEEEEEECCC
T ss_pred CCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCC-CCEEEeeCCC
Confidence 5554 566778999999999999999999999999 888877 3899999999999 9999999754
No 15
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.90 E-value=2.2e-23 Score=163.96 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=121.3
Q ss_pred hhhhhhcCCCCCCcccCCcchhhhcCCCCCCCeEEEEEcCCh-------hhHHHHHHHHHHhccC--CCEEEEEEEecCC
Q 030208 11 YSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGP-------NSKHAFDWALIHLCRL--ADTIHLVHAVSSV 81 (181)
Q Consensus 11 ~~~r~~~~P~l~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~-------~s~~a~~~a~~la~~~--~a~l~llhV~~~~ 81 (181)
...|...+|+|+.+... +..+++||||+|+++ .+..++++|..+++.. +++++++||.+..
T Consensus 136 ~vl~~~~~PVlvv~~~~----------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~ 205 (319)
T 3olq_A 136 QLLRKCPAPVWMVKDKE----------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVA 205 (319)
T ss_dssp HHHHHCSSCEEEEESSC----------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCC
T ss_pred HHHhcCCCCEEEecCcc----------cccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCc
Confidence 44578899999887532 135799999999998 5799999999999999 9999999998764
Q ss_pred chh-----------hHHHHHHHHHHHHHHHHhhhcCc-eEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCccccccc
Q 030208 82 QNQ-----------IVYDMSQGLMEKLAIEAMDVAMV-RTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQ 149 (181)
Q Consensus 82 ~~~-----------~~~~~~~~~l~~~~~~~~~~~~i-~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~ 149 (181)
... ...+...+..++.++...+..++ .++..+..|++.+.|++++++.++||||||+++++++.++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~ 285 (319)
T 3olq_A 206 PINIAIELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFL 285 (319)
T ss_dssp SCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHH
T ss_pred chhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccc
Confidence 321 11222223333333344444444 345667789999999999999999999999999999999999
Q ss_pred CchhhHHHhcCCCccEEEEcCCCCCCC
Q 030208 150 GSVGEYCLHHCKTAPIIVVPGKGTSPS 176 (181)
Q Consensus 150 gs~~~~ll~~~~~~pVlvv~~~~~~~~ 176 (181)
||++++++++++ ||||+||+.+...+
T Consensus 286 Gsv~~~vl~~~~-~pVLvv~~~~~~~p 311 (319)
T 3olq_A 286 GNTAEQLIDHIK-CDLLAIKPDGFTCP 311 (319)
T ss_dssp HHHHHHHHTTCC-SEEEEECCTTCCCC
T ss_pred cHHHHHHHhhCC-CCEEEECCCCCCCC
Confidence 999999999999 99999998776443
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.90 E-value=5.9e-23 Score=161.17 Aligned_cols=153 Identities=23% Similarity=0.269 Sum_probs=120.4
Q ss_pred hhhhhhhcCCCCCCcccCCcchhhhcCCCCCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCch------
Q 030208 10 VYSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN------ 83 (181)
Q Consensus 10 ~~~~r~~~~P~l~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~------ 83 (181)
....+...+|+|+.+..... ..+..+++||||+|+++.+..++++|..+++..+++|+++||.+....
T Consensus 146 ~~vl~~~~~PVlvv~~~~~~------~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~ 219 (309)
T 3cis_A 146 SGLLRHAHCPVVIIHDEDSV------MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGI 219 (309)
T ss_dssp HHHHHHCSSCEEEECTTCCC------SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSC
T ss_pred HHHHHhCCCCEEEEcCCccc------CCCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcc
Confidence 34567789999998864321 112346899999999999999999999999999999999999875321
Q ss_pred --hhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcC
Q 030208 84 --QIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC 160 (181)
Q Consensus 84 --~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~ 160 (181)
....+..++.++++....... .++.++..+..|++.+.|+++++ ++||||||+++++++.++++||++++|++++
T Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~ 297 (309)
T 3cis_A 220 DWPATQSMAEQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLA 297 (309)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcC
Confidence 112233344444443333222 36788888889999999999998 7999999999999999999999999999999
Q ss_pred CCccEEEEcCC
Q 030208 161 KTAPIIVVPGK 171 (181)
Q Consensus 161 ~~~pVlvv~~~ 171 (181)
+ |||+++|+.
T Consensus 298 ~-~pVlvv~~~ 307 (309)
T 3cis_A 298 R-TPVIVARES 307 (309)
T ss_dssp S-SCEEEECC-
T ss_pred C-CCEEEeCCC
Confidence 9 999999974
No 17
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.90 E-value=5.8e-23 Score=160.10 Aligned_cols=146 Identities=16% Similarity=0.292 Sum_probs=122.1
Q ss_pred hhhhhhcCCCCCCcccCCcchhhhcCCCCCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHH
Q 030208 11 YSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMS 90 (181)
Q Consensus 11 ~~~r~~~~P~l~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~ 90 (181)
...|...+|+|+.+.... ....+++|+||+|+++.+..++++|..+++..+++++++||.+... .
T Consensus 148 ~vl~~~~~PVlvv~~~~~--------~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------~ 212 (294)
T 3loq_A 148 GVLHDSKVPVYIFKHDMV--------VNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-------K 212 (294)
T ss_dssp HHHHHCSSCEEEECCCTT--------TTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------C
T ss_pred HHHhcCCCCEEEecCccc--------cCccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-------H
Confidence 345778899998886432 1245799999999999999999999999999999999999988654 2
Q ss_pred HHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 91 QGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 91 ~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
++.++++. +.+...+++++..+..|++.+.|++++++.++||||||+++++++.++++||++++++++++ ||||++|+
T Consensus 213 ~~~l~~~~-~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pvLvv~~ 290 (294)
T 3loq_A 213 TADLRVME-EVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSP-VPVFVCKR 290 (294)
T ss_dssp HHHHHHHH-HHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCS-SCEEEECS
T ss_pred HHHHHHHH-HHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCC-CCEEEECC
Confidence 33344432 33344567888888899999999999999999999999999999999999999999999999 99999998
Q ss_pred CCC
Q 030208 171 KGT 173 (181)
Q Consensus 171 ~~~ 173 (181)
.+.
T Consensus 291 ~~~ 293 (294)
T 3loq_A 291 GDD 293 (294)
T ss_dssp CTT
T ss_pred CCC
Confidence 653
No 18
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.89 E-value=6.4e-22 Score=155.58 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=108.2
Q ss_pred CCCCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchh-------hH--------HHHHHHHHHHHHHHH
Q 030208 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-------IV--------YDMSQGLMEKLAIEA 101 (181)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~-------~~--------~~~~~~~l~~~~~~~ 101 (181)
.|.++++|||++|+++.+..++++|..+|+..+++|+++||.+..... .. .+..++.++++.+.
T Consensus 3 ~M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 81 (319)
T 3olq_A 3 AMEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARY- 81 (319)
T ss_dssp --CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 366789999999999999999999999999999999999997642210 00 12223344443332
Q ss_pred hhhcCceEEEEEe-cCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCCC
Q 030208 102 MDVAMVRTKARIV-EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGT 173 (181)
Q Consensus 102 ~~~~~i~~~~~~~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (181)
....++.+++.+. .|++.+.|++++++.++||||||+++++.+.++++||++++++++++ |||+++|....
T Consensus 82 ~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~-~PVlvv~~~~~ 153 (319)
T 3olq_A 82 YLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCP-APVWMVKDKEW 153 (319)
T ss_dssp HHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCS-SCEEEEESSCC
T ss_pred HhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCC-CCEEEecCccc
Confidence 2345788998888 89999999999999999999999999999999999999999999999 99999997654
No 19
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.88 E-value=5.7e-22 Score=138.01 Aligned_cols=119 Identities=10% Similarity=0.047 Sum_probs=94.6
Q ss_pred CCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEe-cC-C--c-------h--hhH----HHHHHHHHHHHHHHH
Q 030208 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV-SS-V--Q-------N--QIV----YDMSQGLMEKLAIEA 101 (181)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~-~~-~--~-------~--~~~----~~~~~~~l~~~~~~~ 101 (181)
.++++||||+|+++.+..++++|..+|+..+++++++||. +. + . . ... .+..++.++++ +..
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 80 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEK 80 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHH
Confidence 3679999999999999999999999999999999999998 52 1 0 0 011 12233444444 332
Q ss_pred -hhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 102 -MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 102 -~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
....+ .+++.+..|++.+.|++++++.++||||||++++ |++++++++++ |||++||
T Consensus 81 ~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~-~PVlvv~ 138 (138)
T 1q77_A 81 LTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLN-LASLIVK 138 (138)
T ss_dssp HHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSS-SEEEECC
T ss_pred hhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCC-CceEeeC
Confidence 23334 6777788899999999999999999999999876 89999999999 9999986
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.88 E-value=7.3e-22 Score=153.66 Aligned_cols=126 Identities=11% Similarity=0.072 Sum_probs=108.9
Q ss_pred CCCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEe-cC
Q 030208 38 RRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV-EG 116 (181)
Q Consensus 38 ~~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~-~g 116 (181)
|.++++|||++|+++.+..++++|..+|+..+++++++||.++ +..++.++++.+.. ...++.+++.+. .|
T Consensus 4 M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~-------~~~~~~l~~~~~~~-~~~~~~~~~~~~~~g 75 (290)
T 3mt0_A 4 MQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR-------RDHSAALNDLAQEL-REEGYSVSTNQAWKD 75 (290)
T ss_dssp TTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS-------SCCHHHHHHHHHHH-HHTTCCEEEEEECSS
T ss_pred hhhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc-------HHHHHHHHHHHHHH-hhCCCeEEEEEEeCC
Confidence 5678999999999999999999999999999999999999873 23344555544333 356788888887 57
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
++.+.|++++++.++||||||+++++.+.++++||++++++++++ |||+++|...
T Consensus 76 ~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~-~PVlvv~~~~ 130 (290)
T 3mt0_A 76 SLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAP-CPVLMTKTAR 130 (290)
T ss_dssp SHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCS-SCEEEECCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCC-CCEEEecCCC
Confidence 999999999999999999999999999999999999999999999 9999999543
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.87 E-value=2.4e-21 Score=148.92 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=103.5
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhh-----------------------HHHHHHHHHHHHH
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI-----------------------VYDMSQGLMEKLA 98 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~-----------------------~~~~~~~~l~~~~ 98 (181)
++||||+|+++.+..++++|..+|+..+++++++||.+...... ..+..++.++++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999986432100 0112223333322
Q ss_pred HHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCC-cccccccCchhhHHHhcCCCccEEEEcCCCC
Q 030208 99 IEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRG-LIQSVLQGSVGEYCLHHCKTAPIIVVPGKGT 173 (181)
Q Consensus 99 ~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~-~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (181)
+.....++++++.+..|++.+.|+++ +.++||||||+++++ .+.++++||++++++++++ |||++||....
T Consensus 81 -~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~-~PVlvv~~~~~ 152 (268)
T 3ab8_A 81 -QSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASP-VPVLLAPGEPV 152 (268)
T ss_dssp -HHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCS-SCEEEECSSCC
T ss_pred -HHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCC-CCEEEECCCCC
Confidence 23344578888888899999999999 778999999999998 8999999999999999999 99999997654
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.87 E-value=2.7e-21 Score=151.67 Aligned_cols=135 Identities=21% Similarity=0.300 Sum_probs=107.6
Q ss_pred CCCCCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCch--------hh----HHHHHHHHHHHHHHHHhh
Q 030208 36 GERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--------QI----VYDMSQGLMEKLAIEAMD 103 (181)
Q Consensus 36 ~~~~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~--------~~----~~~~~~~~l~~~~~~~~~ 103 (181)
+...++++|||++|+++.+..++++|..+|+..+++|+++||.+.... .. ..+..++.++++.+....
T Consensus 14 ~~~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 93 (309)
T 3cis_A 14 SSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQ 93 (309)
T ss_dssp ----CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 444678999999999999999999999999999999999999873211 01 123334445554333322
Q ss_pred h----cCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCCC
Q 030208 104 V----AMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGT 173 (181)
Q Consensus 104 ~----~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (181)
. .++++++.+..|++.+.|+++++ ++||||||+++++++.++++||++++++++++ |||+++|....
T Consensus 94 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~-~PVlvv~~~~~ 164 (309)
T 3cis_A 94 ASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAH-CPVVIIHDEDS 164 (309)
T ss_dssp HCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCS-SCEEEECTTCC
T ss_pred hcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCC-CCEEEEcCCcc
Confidence 2 26888888889999999999997 69999999999999999999999999999999 99999997764
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.87 E-value=6.9e-22 Score=154.00 Aligned_cols=134 Identities=17% Similarity=0.250 Sum_probs=110.7
Q ss_pred CCCCCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCch-------------hhHHHHHHHHHHHHHHHHh
Q 030208 36 GERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN-------------QIVYDMSQGLMEKLAIEAM 102 (181)
Q Consensus 36 ~~~~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~-------------~~~~~~~~~~l~~~~~~~~ 102 (181)
+-++|+++||||+|+++.+..++++|..+|+..+++|+++||.+.... ....+..++.++++. +.+
T Consensus 17 ~~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 95 (294)
T 3loq_A 17 NLYFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVA-QKI 95 (294)
T ss_dssp CCSSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHH-HHH
T ss_pred hHHHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 335678999999999999999999999999999999999999876431 111234445555543 333
Q ss_pred hhcCceEEE-EEe-cCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCCC
Q 030208 103 DVAMVRTKA-RIV-EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGT 173 (181)
Q Consensus 103 ~~~~i~~~~-~~~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (181)
...++++++ .+. .|++.+.| ++++.++||||||+++++.+.++++||++++++++++ |||++||....
T Consensus 96 ~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~-~PVlvv~~~~~ 165 (294)
T 3loq_A 96 EAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSK-VPVYIFKHDMV 165 (294)
T ss_dssp HHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCS-SCEEEECCCTT
T ss_pred HHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCC-CCEEEecCccc
Confidence 455788887 667 89999999 9999999999999999999999999999999999999 99999998763
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.85 E-value=1.1e-20 Score=145.29 Aligned_cols=135 Identities=14% Similarity=0.156 Sum_probs=111.2
Q ss_pred hhhhhhhcCCCCCCcccCCcchhhhcCCCCCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHH
Q 030208 10 VYSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDM 89 (181)
Q Consensus 10 ~~~~r~~~~P~l~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~ 89 (181)
....|...+|+|+.+.... .+++||||+|+++.+..++++|..++...+++++++||.+.. +.
T Consensus 134 ~~v~~~a~~PVlvv~~~~~-----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~------~~ 196 (268)
T 3ab8_A 134 DRVLRASPVPVLLAPGEPV-----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP------AR 196 (268)
T ss_dssp HHHHHHCSSCEEEECSSCC-----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH------HH
T ss_pred HHHHHhCCCCEEEECCCCC-----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH------HH
Confidence 3445778999998875322 358999999999999999999999999999999999998742 22
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 90 SQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 90 ~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
.++.++++. +.+...++.+++.+..|++.++|++++++. ||||||+ ++.++++||++++++++++ ||||++|
T Consensus 197 ~~~~l~~~~-~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~-~pvlvv~ 268 (268)
T 3ab8_A 197 AEAWALEAE-AYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQ-GPVLTAR 268 (268)
T ss_dssp HHHHHHHHH-HHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCS-SCEEEEC
T ss_pred HHHHHHHHH-HHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCC-CCEEEeC
Confidence 334444433 334445788888888899999999999996 9999998 7788899999999999999 9999996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=96.08 E-value=0.18 Score=34.13 Aligned_cols=124 Identities=14% Similarity=0.052 Sum_probs=83.8
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCC-CEEEEEEEecCC-----chhhHHHHHHHHHHHHHHHHhhhcCceEE-EEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSV-----QNQIVYDMSQGLMEKLAIEAMDVAMVRTK-ARI 113 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~-a~l~llhV~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~i~~~-~~~ 113 (181)
+++|||-++-.-.+..+......+..... ..+.++--.+.. ........+++.+.. ....+...|+..+ -.+
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~~~~a~~~e~~~a~~~A~~~l~~-sl~aL~~~G~~a~~G~v 79 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPPPGWVYEENEVRRRAEEEAAA-AKRALEAQGIPVEEAKA 79 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEECCCCSCC--CHHHHHHHHHHHH-HHHHHHTTTCCCSEEEE
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCCCCcccccChHHHHHHHHHHHHH-HHHHHHHcCCccccccc
Confidence 37889999888777777777667776654 666554423221 112223445555555 3355566678877 788
Q ss_pred ecCChHHHHHHHHHHhC--CCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEE
Q 030208 114 VEGDAAKVICKEAERLK--PAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (181)
Q Consensus 114 ~~g~~~~~I~~~a~~~~--~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (181)
..++|...|.+.....+ +|=||+.+..+. .+.+|--..+.+.=+ .. +||+=+
T Consensus 80 ~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~-vs~~fh~DwasrAr~-~g-vPVlhl 133 (138)
T 2iel_A 80 GDISPLLAIEEELLAHPGAYQGIVLSTLPPG-LSRWLRLDVHTQAER-FG-LPVIHV 133 (138)
T ss_dssp EESSHHHHHHHHHHHSTTSCSEEEEEECCTT-TCHHHHTTHHHHGGG-GS-SCEEEE
T ss_pred CCCChHHHHHHHHHhcCCCCceEEEEcCCch-HHHHHhccHHHHHHh-cC-CCEEEE
Confidence 88999999999999999 999999988553 345555566665555 77 999855
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=94.41 E-value=0.51 Score=36.54 Aligned_cols=95 Identities=14% Similarity=0.026 Sum_probs=61.1
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCE-EEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec----
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADT-IHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE---- 115 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~-l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~---- 115 (181)
.++|+|+++++..|..++..+.++....+-+ +.++|+..... ...+...+.. ++..+..+++..+....
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r--~~s~~~~~~v----~~~a~~lgi~~~v~~~~~~~~ 97 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR--ESAERDEEFC----KEFAKERNMKIFVGKEDVRAF 97 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS--THHHHHHHHH----HHHHHHHTCCEEEEECCHHHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC--cccHHHHHHH----HHHHHHcCCcEEEEEEechhh
Confidence 3789999999999999998888776666777 99999965432 1111222222 23333445665543321
Q ss_pred ----C-ChH--------HHHHHHHHHhCCCEEEEeccCC
Q 030208 116 ----G-DAA--------KVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 116 ----g-~~~--------~~I~~~a~~~~~dliV~g~~~~ 141 (181)
| ++. ..+.+++++.+++.|+.|.+..
T Consensus 98 ~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~d 136 (317)
T 1wy5_A 98 AKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLN 136 (317)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchh
Confidence 2 211 2455678888999999998743
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=94.25 E-value=0.52 Score=38.60 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=63.6
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec-----
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE----- 115 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~----- 115 (181)
.++|+|+++++..|..++..+.++....+.++.++||........ .+...+. .++.++..+++..+.-..
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~-s~~~~~~----v~~~~~~lgi~~~v~~~~~~~~~ 92 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRE-SEEEMEF----VKRFCVERRILCETAQIDVPAFQ 92 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHH-HHHHHHH----HHHHHHHTTCEEEEEECCCHHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccc-cHHHHHH----HHHHHHHcCCcEEEEEechhhhh
Confidence 378999999999999999999888777788999999976432111 1111222 334444556665544332
Q ss_pred ---C-Ch--------HHHHHHHHHHhCCCEEEEeccCC
Q 030208 116 ---G-DA--------AKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 116 ---g-~~--------~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
| ++ -..+.++|++.+++.|+.|.+..
T Consensus 93 ~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 93 RSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp TTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 1 11 14556678888999999998743
No 28
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=93.25 E-value=0.12 Score=39.57 Aligned_cols=105 Identities=10% Similarity=0.079 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHHhCCC
Q 030208 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPA 132 (181)
Q Consensus 53 ~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~d 132 (181)
+..-++-.|..+....+++|+++.|++. ....+.++..++++. +...+..+..++. .+..+|+..+ .++|
T Consensus 177 Ng~LmlllAylL~~nW~A~I~L~~vV~d---e~a~~~a~~~l~~Lv----~~~Ri~a~~~vv~-~~F~~il~~s--~~AD 246 (294)
T 3g40_A 177 NMDLALLIAYKLKSNWKASLSFMTFAPT---AIQAQAAENFLQSLA----ELARIPNVKMQVL-RENPIKSSKL--PFAS 246 (294)
T ss_dssp TTHHHHHHHHHHHHHHTCEEEEEEECSS---HHHHHHHHHHHHHHH----HHHTCCSCEEEEE-SSCTTTSSSC--CCCS
T ss_pred chhHHHHHHHHHhhCcCCeEEEEEecCC---HHHHHHHHHHHHHHH----HHhcCCceEEEec-CchHHHHhhC--cCCC
Confidence 3444555555555556999999999873 223334444444443 3333443333334 4444555444 4599
Q ss_pred EEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCCCC
Q 030208 133 AVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGTS 174 (181)
Q Consensus 133 liV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (181)
|+++|-....+++ ..+++...+. ...++++..+..
T Consensus 247 L~flGl~~~~df~------~~~~~~~~~~-ssc~f~~dsg~e 281 (294)
T 3g40_A 247 LHIFSLDPNPDLD------LARHLMEKAG-SSCIFALDSGEE 281 (294)
T ss_dssp EEEEECCSSCCHH------HHHHHHHHHT-SEEEEEECCSCC
T ss_pred EEEEcCCCCCcHH------HHHHHHHhcC-CeEEEEecCchh
Confidence 9999998777665 4478888888 888888776653
No 29
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=92.77 E-value=0.81 Score=37.57 Aligned_cols=113 Identities=10% Similarity=0.083 Sum_probs=71.5
Q ss_pred cCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHH---HHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHH
Q 030208 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVY---DMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKE 125 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~ 125 (181)
|..-..-.++..|++.+...+..+..|.+.++....... .-..+.++++. +.+...|+.. .+..|++.+.|.++
T Consensus 46 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~~sL~~L~-~~L~~~G~~L--~v~~g~~~~~l~~l 122 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFMLKGLQELE-VSLSRKKIPS--FFLRGDPGEKISRF 122 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGGSCHHHHHHHHHHHHHHH-HHHHHTTCCE--EEEESCHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhccCHHHHHHHHHHHHHHH-HHHHHcCCcE--EEEeCCHHHHHHHH
Confidence 444555678888888776667789999998865332222 22234444433 3334435554 45679999999999
Q ss_pred HHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 126 AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 126 a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
+++.+++.|+.-........ ....++..... +++..+..
T Consensus 123 ~~~~~~~~V~~~~~~~~~~~-----~~~~~v~~~lg-i~~~~~~~ 161 (482)
T 2xry_A 123 VKDYNAGTLVTDFSPLRIKN-----QWIEKVISGIS-IPFFEVDA 161 (482)
T ss_dssp HHHTTCSEEEEECCCSHHHH-----HHHHHHHHHCC-SCEEEECC
T ss_pred HHHcCCCEEEEecccchhHH-----HHHHHHHHHcC-CEEEEEeC
Confidence 99999999998654322111 12244555556 88888765
No 30
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=91.24 E-value=2.3 Score=32.05 Aligned_cols=84 Identities=12% Similarity=0.142 Sum_probs=53.5
Q ss_pred EEEcCChhhHHHHHHHHHHhccCCC--EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec----C-C-
Q 030208 46 IAVDHGPNSKHAFDWALIHLCRLAD--TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE----G-D- 117 (181)
Q Consensus 46 v~vd~s~~s~~a~~~a~~la~~~~a--~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~----g-~- 117 (181)
+....++.+..++..|.+++...+. +++++.+-+. ..++.+++... . |..--+.+.. + +
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~--------~~~~~lr~ala----~-GaD~vi~v~d~~~~~~~~ 97 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD--------RVDESLRKCLA----K-GADRAVRVWDDAAEGSDA 97 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG--------GGHHHHHHHHH----T-TCSEEEEECCGGGTTCCH
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCch--------hHHHHHHHHHh----c-CCCEEEEEcCcccccCCH
Confidence 3444568899999999999877666 8988888541 12333443321 1 2333333321 1 2
Q ss_pred --hHHHHHHHHHHhCCCEEEEeccCCC
Q 030208 118 --AAKVICKEAERLKPAAVVIGSRGRG 142 (181)
Q Consensus 118 --~~~~I~~~a~~~~~dliV~g~~~~~ 142 (181)
....|.+++++.++|+|++|....+
T Consensus 98 ~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 98 IVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 3457777888889999999988654
No 31
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=89.62 E-value=2.4 Score=33.00 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=57.7
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEe-----c
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV-----E 115 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~-----~ 115 (181)
+.+|+|++++...|..++..+.+.....+-.+.++|+....... +..+.. ++..+..++++.+... .
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~----et~~~v----~~~~~~~gi~l~v~~~~~~~~~ 117 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQ----EMYRFR----DQMVEEMGLDLITHINPDGVAQ 117 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCH----HHHHHH----HHHHHTTTCCEEEECC------
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCH----HHHHHH----HHHHHHcCCCEEEEeCchHHhc
Confidence 46899999999999999999888765545678899985432211 122222 2333334455443221 1
Q ss_pred C-Ch-------------HHHHHHHHHHhCCCEEEEeccCC
Q 030208 116 G-DA-------------AKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 116 g-~~-------------~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
| +. ...+.+++++.+++.++.|.+..
T Consensus 118 G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 118 GINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp --------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred CCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 2 11 12466677788999999998754
No 32
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=89.41 E-value=1.4 Score=36.59 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=60.5
Q ss_pred CeEEEEE--cCChhhHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHH---HHHHHHHHHHHHHHhhhcCceEEEEEe
Q 030208 42 RDILIAV--DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVY---DMSQGLMEKLAIEAMDVAMVRTKARIV 114 (181)
Q Consensus 42 ~~Ilv~v--d~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~---~~~~~~l~~~~~~~~~~~~i~~~~~~~ 114 (181)
+.+|+=+ |..-..-.|+..|++.+...+..|..|+|.++. ...... .-..+.|.++.+ .+...|+ ...+.
T Consensus 38 ~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~~~~r~~FL~~sL~dL~~-~L~~lG~--~L~v~ 114 (506)
T 3umv_A 38 GPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAA-DAAARHL--PFFLF 114 (506)
T ss_dssp SCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGCCHHHHHHHHHHHHHHHH-HHHHTTC--CEEEE
T ss_pred CEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCCCHHHHHHHHHHHHHHHH-HHHHcCC--ceEEE
Confidence 3455544 555666688999988887777889999998875 211111 223344444333 3333343 44567
Q ss_pred cCChHHHHHHHHHHhCCCEEEE
Q 030208 115 EGDAAKVICKEAERLKPAAVVI 136 (181)
Q Consensus 115 ~g~~~~~I~~~a~~~~~dliV~ 136 (181)
.|++.+. .+++++.+++.|+.
T Consensus 115 ~G~p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 115 TGGPAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp SSCTTHH-HHHHHHTTCSEEEE
T ss_pred ecChHHH-HHHHHhcCCCEEEe
Confidence 8999999 99999999999987
No 33
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=87.88 E-value=6.9 Score=29.19 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=51.0
Q ss_pred CChhhHHHHHHHHHHhccCCC--EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEe------cC-C---
Q 030208 50 HGPNSKHAFDWALIHLCRLAD--TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV------EG-D--- 117 (181)
Q Consensus 50 ~s~~s~~a~~~a~~la~~~~a--~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~------~g-~--- 117 (181)
.++.+..++..|.++... +. +++++.+-+.. .++.+++.... |..--+.+. .+ +
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~--------a~~~lr~ala~-----GaD~vi~v~~d~~~~~~~~~~~ 100 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ--------AAETLRTALAM-----GADRAILVVAADDVQQDIEPLA 100 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG--------GHHHHHHHHHH-----TCSEEEEEECCSSTTCCCCHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh--------HHHHHHHHHhc-----CCCEEEEEecChhhcccCCHHH
Confidence 457889999999999876 65 89988886421 23344443221 233233332 12 2
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCC
Q 030208 118 AAKVICKEAERLKPAAVVIGSRGRG 142 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~~~ 142 (181)
....|.+++++.++|+|++|....+
T Consensus 101 ~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 101 VAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccC
Confidence 3457777888889999999988654
No 34
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=86.78 E-value=6.1 Score=28.74 Aligned_cols=86 Identities=8% Similarity=0.057 Sum_probs=56.6
Q ss_pred CCeEEEEEcC-----ChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec
Q 030208 41 GRDILIAVDH-----GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE 115 (181)
Q Consensus 41 ~~~Ilv~vd~-----s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 115 (181)
+++|||-.+. .+.+..++..|.+++...|.+++++-+-+.. ++.+++ ... .|..--+.+..
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~---------~~~~~~----~~~-~Gad~v~~v~~ 68 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGL---------KEIEKQ----ILP-YGVDKLHVFDA 68 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCC---------TTTHHH----HGG-GTCSEEEEEEC
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCH---------HHHHHH----HHh-cCCCEEEEecC
Confidence 4667777653 3678999999999998888899988886521 111122 222 13333333321
Q ss_pred ----C----ChHHHHHHHHHHhCCCEEEEeccC
Q 030208 116 ----G----DAAKVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 116 ----g----~~~~~I~~~a~~~~~dliV~g~~~ 140 (181)
+ ...+.|.+.++++++|+|++|+..
T Consensus 69 ~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 69 EGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp GGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 246788889999999999999863
No 35
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=85.02 E-value=6.4 Score=27.85 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=44.0
Q ss_pred HHhhhcCceEEEEEecC-ChHHHHHHHHH---HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 100 EAMDVAMVRTKARIVEG-DAAKVICKEAE---RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 100 ~~~~~~~i~~~~~~~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
+.++.-++.++..+..- ...+.+.+|++ .++++.+|.|+-+...+.+ -+...+. .||+-||-..
T Consensus 43 ~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpG--------vvAa~T~-~PVIGVPv~s 110 (181)
T 4b4k_A 43 DILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG--------MVAAKTN-LPVIGVPVQS 110 (181)
T ss_dssp HHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--------HHHTTCC-SCEEEEECCC
T ss_pred HHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchh--------hHHhcCC-CCEEEEecCC
Confidence 34445567888777664 55566666664 4678899999776665554 3566788 9999998743
No 36
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=84.48 E-value=4.2 Score=25.69 Aligned_cols=55 Identities=13% Similarity=-0.029 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCC----CcccccccCchhhHHHhcCCCccEEEEcCCCC
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGR----GLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGT 173 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~----~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (181)
...+.|.+++++++++.||+|.... .+......-..+++|-.. . .||..+-.+.+
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~-lpV~~~DERlT 96 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-G-VEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-T-CEEEEECCSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-C-CCEEEECCCCC
Confidence 3468899999999999999995422 111111223445666666 7 99998866543
No 37
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=84.45 E-value=5.1 Score=28.16 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=40.9
Q ss_pred HhhhcCceEEEEEecC-ChHHHHHHHHHH---hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 101 AMDVAMVRTKARIVEG-DAAKVICKEAER---LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 101 ~~~~~~i~~~~~~~~g-~~~~~I~~~a~~---~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
.++.-++.++..+..- ...+.+.+|+++ ++++.||.++-....+.+ -+...+. +||+-||-
T Consensus 34 ~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpg--------vvA~~t~-~PVIgVPv 98 (173)
T 4grd_A 34 ILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPG--------MLAAKTT-VPVLGVPV 98 (173)
T ss_dssp HHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHH--------HHHHHCC-SCEEEEEE
T ss_pred HHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchh--------hheecCC-CCEEEEEc
Confidence 3344457777777653 555666666544 678999988776655543 3566778 99999984
No 38
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=83.53 E-value=1.4 Score=31.34 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=60.8
Q ss_pred CCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChH
Q 030208 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (181)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~ 119 (181)
|+++|++++.++..+.++.+.+..+.+. |.+++++-.-... .....+. ++ ...+. +.-..+..
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T~~A~-~fi~~~~----l~-------~l~~~---~~d~~~~~- 63 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQH-FDEVNILFSPSSK-NFINTDV----LK-------LFCDN---LYDEIKDP- 63 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTTT-SSCEEEEECGGGG-GTSCGGG----GG-------GTSSC---EECTTTCT-
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEchhHH-HHHHHHH----HH-------HHhCC---cccccCCC-
Confidence 4689999999999999999988777654 7777776542210 0000010 00 11111 11111111
Q ss_pred HHH--HHHHHHhCCCEEEEeccCCCccccc---ccCchhhHHHhcCCCccEEEEcCC
Q 030208 120 KVI--CKEAERLKPAAVVIGSRGRGLIQSV---LQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 120 ~~I--~~~a~~~~~dliV~g~~~~~~~~~~---~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
.+ ++.++. +|++|+.--..+.+.++ +-.+....++.... +|++++|.-
T Consensus 64 -~~~hi~l~~~--aD~~vIaPaTantlAKiA~GiaDnllt~~~la~~-~pvvlaPam 116 (181)
T 1g63_A 64 -LLNHINIVEN--HEYILVLPASANTINKIANGICDNLLTTVCLTGY-QKLFIFPNM 116 (181)
T ss_dssp -TCCHHHHHHT--CSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHTG-GGEEEEECC
T ss_pred -CCcccccccc--CCEEEEecCCHHHHHHHHccccCcHHHHHHHHcC-CCEEEEeCC
Confidence 12 222444 99999986544433322 22333344445577 999999843
No 39
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=83.14 E-value=7.8 Score=31.26 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=34.5
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhcc-CCCEEEEEEEecC
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCR-LADTIHLVHAVSS 80 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~-~~a~l~llhV~~~ 80 (181)
.++|+|++++...|..++..+.++... .+-++.++||...
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhg 53 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHG 53 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECC
Confidence 378999999999999999998888766 6789999999654
No 40
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=82.82 E-value=14 Score=29.23 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=55.0
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchh-hHHHHHHHHHHHHHHHHhhhcCceEEEEEec----
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-IVYDMSQGLMEKLAIEAMDVAMVRTKARIVE---- 115 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~---- 115 (181)
.++|+|++++...|..++..+.+ .+-++..+|+....... ...-...+..+. ++...+..+++..+.-..
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~~~~~~s~~d~~~-a~~va~~LGIp~~vvd~~~~f~ 91 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNWEEDDGEEYCTAAADLAD-AQAVCDKLGIELHTVNFAAEYW 91 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEECCCCCSHHHHHHHHHHHHH-HHHHHHHHTCCEEEEECHHHHH
T ss_pred CCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEcCccccccCCCCCHHHHHH-HHHHHHHcCCcEEEEeCcHHHH
Confidence 57899999999888777766544 37789999986432110 000001111121 233334445555433221
Q ss_pred -------------C---Ch---------HHHHHHHHHH-hCCCEEEEeccCC
Q 030208 116 -------------G---DA---------AKVICKEAER-LKPAAVVIGSRGR 141 (181)
Q Consensus 116 -------------g---~~---------~~~I~~~a~~-~~~dliV~g~~~~ 141 (181)
| ++ ...+.++|++ .++|.|+.|.+..
T Consensus 92 ~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~ 143 (380)
T 2der_A 92 DNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVR 143 (380)
T ss_dssp HHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCE
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccc
Confidence 1 11 2356677887 8999999997543
No 41
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=82.44 E-value=2.7 Score=30.61 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=29.9
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.++|++++.++..+.++++.+..+.+. |.+++++-.
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~~-g~eV~vv~T 39 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQE-EREVHFLIS 39 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 489999999999999999988777664 788777654
No 42
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=81.92 E-value=14 Score=27.59 Aligned_cols=97 Identities=16% Similarity=0.081 Sum_probs=58.5
Q ss_pred CChhhHHHHHHHHHHhccCCC--EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEe------cC-C---
Q 030208 50 HGPNSKHAFDWALIHLCRLAD--TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV------EG-D--- 117 (181)
Q Consensus 50 ~s~~s~~a~~~a~~la~~~~a--~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~------~g-~--- 117 (181)
.++.+..++..|.++... +. +++++.+-+.. .++.+++.... |.+--+.+. .+ +
T Consensus 38 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~--------a~~~lr~ala~-----GaD~vi~v~~d~~~~~~~~~~~ 103 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ--------CQETIRTALAM-----GADRGIHVEVPPAEAERLGPLQ 103 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT--------HHHHHHHHHHH-----TCSEEEEEECCHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh--------HHHHHHHHHhc-----CCCEEEEEecChhhcccCCHHH
Confidence 457888999999999876 65 89998886521 23334433211 233333332 12 2
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccE
Q 030208 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPI 165 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pV 165 (181)
..+.|.+++++.++|+|++|....++-. +.+.-.+..... +|.
T Consensus 104 ~A~~La~~i~~~~~dlVl~G~~s~d~d~----~~v~p~lA~~L~-~~~ 146 (255)
T 1efv_B 104 VARVLAKLAEKEKVDLVLLGKQAIDDDC----NQTGQMTAGFLD-WPQ 146 (255)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCC----CCHHHHHHHHHT-CCE
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccCCch----hhHHHHHHHHhC-CCc
Confidence 3457777888889999999988654322 334444444444 443
No 43
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=81.82 E-value=9.8 Score=30.10 Aligned_cols=35 Identities=6% Similarity=-0.024 Sum_probs=27.9
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecC
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~ 80 (181)
++|+|++++...|..++..+.+. +-++..+|+...
T Consensus 10 ~kVlVa~SGGvDSsv~a~lL~~~----G~~V~~v~~~~~ 44 (376)
T 2hma_A 10 TRVVVGMSGGVDSSVTALLLKEQ----GYDVIGIFMKNW 44 (376)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred CeEEEEEeCHHHHHHHHHHHHHc----CCcEEEEEEECC
Confidence 68999999999888777766543 678999998653
No 44
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=81.66 E-value=13 Score=27.04 Aligned_cols=86 Identities=7% Similarity=-0.060 Sum_probs=47.8
Q ss_pred CCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChH
Q 030208 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (181)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~ 119 (181)
..++|.|-+.++.+...++-.++ +..+-...++-|+........ + +..+..++.+...-...-..
T Consensus 7 ~~~ri~vl~SG~gsnl~all~~~---~~~~~~~~I~~Vis~~~~a~~-------l-----~~A~~~gIp~~~~~~~~~~~ 71 (215)
T 3kcq_A 7 KELRVGVLISGRGSNLEALAKAF---STEESSVVISCVISNNAEARG-------L-----LIAQSYGIPTFVVKRKPLDI 71 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHT---CCC-CSEEEEEEEESCTTCTH-------H-----HHHHHTTCCEEECCBTTBCH
T ss_pred CCCEEEEEEECCcHHHHHHHHHH---HcCCCCcEEEEEEeCCcchHH-------H-----HHHHHcCCCEEEeCcccCCh
Confidence 35789998888866555444442 221212445555543221111 1 22234457665321112124
Q ss_pred HHHHHHHHHhCCCEEEEeccC
Q 030208 120 KVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~~~ 140 (181)
+++++..++.++|++|+....
T Consensus 72 ~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp HHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHHHhCCCEEEEeCCc
Confidence 789999999999999999764
No 45
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=81.46 E-value=7.9 Score=26.77 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=45.6
Q ss_pred HHhhhcCceEEEEEecC-ChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 100 EAMDVAMVRTKARIVEG-DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 100 ~~~~~~~i~~~~~~~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
..++.-+++++..+..- ...+.+.+++++...+.+|.++-....+.+ -+...+. .||+-||-
T Consensus 20 ~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpg--------vva~~t~-~PVIgVP~ 82 (157)
T 2ywx_A 20 NILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPG--------VVASLTT-KPVIAVPV 82 (157)
T ss_dssp HHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHH--------HHHTTCS-SCEEEEEE
T ss_pred HHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHH--------HHHhccC-CCEEEecC
Confidence 33445567788777653 678888999987766999998776655543 3666777 99999986
No 46
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=80.88 E-value=17 Score=27.84 Aligned_cols=120 Identities=9% Similarity=0.111 Sum_probs=76.7
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec-CChHH
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GDAAK 120 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~-g~~~~ 120 (181)
-+|||++.........++++..+... .+-+++++|...........+ ++. ..+.++..++...+.++. .++..
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~-~G~ltv~~i~p~~~~~~l~~q----l~~-l~~~l~~r~v~a~~~vi~a~d~~~ 94 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYP-KGSVKLLGLAGNTDKENLLSQ----LPS-ISEGFQEEGVFSSWTIIDTAEFEE 94 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTT-TCEEEEEECC---CTTCHHHH----HHH-HHHHHHHTTCEEEEEEC-----CH
T ss_pred CcEEEecCCchhhhhHHHHHHHhccC-ceeEEEEEEccCCCccHHHHH----HHH-HHHHHHhCCceeEEEEEecCChhH
Confidence 67999998888888999999888765 567999999765432221111 344 345666667877776665 48999
Q ss_pred HHHHHHHHhC-----CCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 121 VICKEAERLK-----PAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 121 ~I~~~a~~~~-----~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
++...++.++ ...|++|......-.. -+-.+.. -+.+.. .-|++++.
T Consensus 95 G~~~lvq~yglg~l~PNTilLg~~~~~e~~~-~y~~~i~-~~~~~~-~nVlil~~ 146 (294)
T 3g40_A 95 NLVVGMEALTGSFFRPSILFLRLPENRDRDE-EIREIIR-KASMYR-MGVLLFSK 146 (294)
T ss_dssp HHHHHHHHHTTCSSCSCEEEEECCSSGGGHH-HHHHHHH-HHHHTT-CEEEEEEC
T ss_pred HHHHHHHHcCCCCCCCCEEEeCCCCChhhhH-HHHHHHH-HHHHhC-ceEEEEec
Confidence 9999988876 5788998765433211 1223333 334567 89999964
No 47
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=80.33 E-value=22 Score=28.95 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecC
Q 030208 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (181)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~ 80 (181)
..++|+|++++...|..++.++.+. |.+++.+|+...
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~G 45 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLG 45 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcC
Confidence 3488999999999998888888653 779999999654
No 48
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=80.26 E-value=19 Score=28.71 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=54.5
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhc-CceEEEEEecC---
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVA-MVRTKARIVEG--- 116 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~i~~~~~~~~g--- 116 (181)
..++++++++...|..++..+.+ .|.++..+|+...+... +...+..+++++...+.. +++....-...
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~~~~~~---~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~~~~ 259 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHSPPFTS---ERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQK 259 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEECTTTSC---HHHHHHHHHHHHHHGGGSSCEEEEEEECHHHHH
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeCCCCCC---HHHHHHHHHHHHHHHHhCCCCeEEEEECcHHHH
Confidence 47899999999999888777755 37789999996432111 111222333333332221 34443322110
Q ss_pred ------C-------h----HHHHHHHHHHhCCCEEEEeccCC
Q 030208 117 ------D-------A----AKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 117 ------~-------~----~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
. . ...+.++|++.+++.|+.|.+..
T Consensus 260 ~i~~~~~~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~d 301 (413)
T 2c5s_A 260 TINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLG 301 (413)
T ss_dssp HHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSS
T ss_pred HHHhcCCcccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccch
Confidence 0 0 01234568899999999998643
No 49
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=79.95 E-value=9.7 Score=26.77 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=42.1
Q ss_pred HhhhcCceEEEEEecC-ChHHHHHHHHHH---hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 101 AMDVAMVRTKARIVEG-DAAKVICKEAER---LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 101 ~~~~~~i~~~~~~~~g-~~~~~I~~~a~~---~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
.++.-++.++..+..- ...+.+.+++++ ++++.+|.++-....+.+ -+...+. .||+-||-.
T Consensus 34 ~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~-~PVIgVP~~ 99 (174)
T 3kuu_A 34 VLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPG--------MLAAKTL-VPVLGVPVQ 99 (174)
T ss_dssp HHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHH--------HHHHTCS-SCEEEEEEC
T ss_pred HHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH--------HHHhccC-CCEEEeeCC
Confidence 3345567777777653 556677777654 678888888776655543 3666778 999999854
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=79.26 E-value=13 Score=28.46 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=55.6
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhcc------------------CCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhh
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCR------------------LADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMD 103 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~------------------~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~ 103 (181)
.+|+|++++.+.|..++..+.+.... .+..+.++|+..... ..+..+..+++ .+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~----fpet~~fv~~~----~~ 125 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET----FPTLENFVLET----SE 125 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC----CHHHHHHHHHH----HH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC----CHHHHHHHHHH----HH
Confidence 47999999999999888887765321 145688888854322 22222333332 23
Q ss_pred hcCceEEEEEe----cCChHHHHHHHHHHh-CCCEEEEeccCCC
Q 030208 104 VAMVRTKARIV----EGDAAKVICKEAERL-KPAAVVIGSRGRG 142 (181)
Q Consensus 104 ~~~i~~~~~~~----~g~~~~~I~~~a~~~-~~dliV~g~~~~~ 142 (181)
..++++..... .....+.+.++++.. ..+.|++|.+...
T Consensus 126 ~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 126 RYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp HTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred HcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 33444432111 124556677777663 6789999988643
No 51
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=79.05 E-value=13 Score=25.95 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=43.0
Q ss_pred HhhhcCceEEEEEecC-ChHHHHHHHHHH---hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 101 AMDVAMVRTKARIVEG-DAAKVICKEAER---LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 101 ~~~~~~i~~~~~~~~g-~~~~~I~~~a~~---~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
.++.-++.++..+..- ...+.+.+++++ .+++.+|.++-....+.+ -+...+. .||+-||-.
T Consensus 27 ~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~-~PVIgVP~~ 92 (166)
T 3oow_A 27 ILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPG--------MVAAKTT-LPVLGVPVK 92 (166)
T ss_dssp HHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--------HHHHTCS-SCEEEEECC
T ss_pred HHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHH--------HHHhccC-CCEEEeecC
Confidence 3345567777777653 556777777654 467999998776655543 3667788 999999864
No 52
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=78.78 E-value=8.7 Score=26.89 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=41.3
Q ss_pred HhhhcCceEEEEEecC-ChHHHHHHH---HHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 101 AMDVAMVRTKARIVEG-DAAKVICKE---AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 101 ~~~~~~i~~~~~~~~g-~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
.++.-++.++..+..- ...+.+.++ ++..+++.+|.++-....+.+ -+...+. .||+-||-.
T Consensus 28 ~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~-~PVIgVP~~ 93 (169)
T 3trh_A 28 ELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAG--------TIAAHTL-KPVIGVPMA 93 (169)
T ss_dssp HHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHH--------HHHHTCS-SCEEEEECC
T ss_pred HHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH--------HHHhcCC-CCEEEeecC
Confidence 3345567777776653 445555555 445788988888776655543 3666788 999999865
No 53
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=78.78 E-value=15 Score=26.15 Aligned_cols=89 Identities=10% Similarity=0.050 Sum_probs=54.3
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCCh---
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--- 118 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~--- 118 (181)
.+|+|++++...|..++..+.+.. .++.++|+...... .+..+. .++..+..++++.+....-..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~----~e~~~~----v~~~~~~~gi~~~v~~~~~~~~~~ 112 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF----PETYRF----IDELTDKLKLNLKVYRATESAAWQ 112 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC----HHHHHH----HHHHHHHTTCEEEEEECSSCHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC----HHHHHH----HHHHHHHhCCcEEEEeCCCCHHHH
Confidence 589999999999998888887763 46888998654321 112222 333344445666543221111
Q ss_pred ------------H-----------HHHHHHHHHhCCCEEEEeccCCC
Q 030208 119 ------------A-----------KVICKEAERLKPAAVVIGSRGRG 142 (181)
Q Consensus 119 ------------~-----------~~I~~~a~~~~~dliV~g~~~~~ 142 (181)
. ..+.+++++.+++.++.|.+...
T Consensus 113 ~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd 159 (215)
T 1sur_A 113 EARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 159 (215)
T ss_dssp HHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTS
T ss_pred HHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhh
Confidence 0 13445667777788999987543
No 54
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=77.90 E-value=12 Score=26.14 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=43.3
Q ss_pred HhhhcCceEEEEEecC-ChHHHHHHHHHH---hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 101 AMDVAMVRTKARIVEG-DAAKVICKEAER---LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 101 ~~~~~~i~~~~~~~~g-~~~~~I~~~a~~---~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
.++.-+++++..+..- ...+.+.+++++ ++++.||.++-....+.+ -+...+. .||+-||-..
T Consensus 33 ~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~-~PVIgVP~~~ 99 (170)
T 1xmp_A 33 ILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG--------MVAAKTN-LPVIGVPVQS 99 (170)
T ss_dssp HHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHTTCC-SCEEEEEECC
T ss_pred HHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH--------HHHhccC-CCEEEeeCCC
Confidence 3344567787777653 566777777764 468888888776655543 3666777 9999998643
No 55
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=77.68 E-value=4.5 Score=28.86 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=28.7
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
++|++++.++..+..+.+.+..+.+. |.+++++-.
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T 36 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVIS 36 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 78999999998898998888777655 777776653
No 56
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=77.57 E-value=25 Score=28.83 Aligned_cols=86 Identities=14% Similarity=-0.020 Sum_probs=52.2
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec------
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~------ 115 (181)
+++++++++...|..++..+.+. +.+++.+|+.......... +..+++. +..+++....-..
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g~~~~~e~----~~v~~~~----~~lgi~~~vv~~~~~f~~~ 277 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHGLLRLGER----EEVEGAL----RALGVNLLVVDAKERFLKA 277 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECSCSCTTHH----HHHHHHH----HHTTCCEEEEECHHHHHHH
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCCCCChHHH----HHHHHHH----HHhCCCEEEEECcHHHHHh
Confidence 78999999999998888777654 6899999986532211111 1222222 2234544433211
Q ss_pred --C--Ch-----------HHHHHHHHHHh-CCCEEEEecc
Q 030208 116 --G--DA-----------AKVICKEAERL-KPAAVVIGSR 139 (181)
Q Consensus 116 --g--~~-----------~~~I~~~a~~~-~~dliV~g~~ 139 (181)
| ++ ...+.++|++. +++.|+.|++
T Consensus 278 l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~ 317 (503)
T 2ywb_A 278 LKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTL 317 (503)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCC
T ss_pred hcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 1 22 12345568887 8999999985
No 57
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=77.31 E-value=12 Score=26.32 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=40.6
Q ss_pred HhhhcCceEEEEEecC-ChHHHHHHH---HHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 101 AMDVAMVRTKARIVEG-DAAKVICKE---AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 101 ~~~~~~i~~~~~~~~g-~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
.++.-++.++..+..- ...+.+.++ +++.+++.+|.++-....+.+ -+...+. .||+-||-.
T Consensus 29 ~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~-~PVIgVP~~ 94 (174)
T 3lp6_A 29 ALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPG--------MVAAATP-LPVIGVPVP 94 (174)
T ss_dssp HHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHH--------HHHHHCS-SCEEEEEEC
T ss_pred HHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHH--------HHHhccC-CCEEEeeCC
Confidence 3344567777776652 444455555 566789988888776655543 3666788 999999854
No 58
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=77.06 E-value=13 Score=25.88 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=42.6
Q ss_pred HHhhhcCceEEEEEecC-ChHHHHHHHHH---HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 100 EAMDVAMVRTKARIVEG-DAAKVICKEAE---RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 100 ~~~~~~~i~~~~~~~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
..++.-++.++..+..- ...+.+.++++ .++++.+|.++-....+.+ -+...+. .||+-||-.
T Consensus 24 ~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~-~PVIgVP~~ 90 (163)
T 3ors_A 24 NMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPG--------MVASLTT-LPVIGVPIE 90 (163)
T ss_dssp HHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCS-SCEEEEEEC
T ss_pred HHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH--------HHHhccC-CCEEEeeCC
Confidence 33445567777777653 56667777765 4568988888776655543 3666788 999999854
No 59
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=76.54 E-value=12 Score=25.88 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=42.0
Q ss_pred HHhhhcCceEEEEEecC-ChHHHHHHHHHH---h-CCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 100 EAMDVAMVRTKARIVEG-DAAKVICKEAER---L-KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 100 ~~~~~~~i~~~~~~~~g-~~~~~I~~~a~~---~-~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
..++.-++.++..+..- ...+.+.+++++ . +++.+|.++-....+.+ -+...+. .||+-||-.
T Consensus 23 ~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpg--------vvA~~t~-~PVIgVP~~ 90 (159)
T 3rg8_A 23 SELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSG--------FVDGFVK-GATIACPPP 90 (159)
T ss_dssp HHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHH--------HHHHHSS-SCEEECCCC
T ss_pred HHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHH--------HHHhccC-CCEEEeeCC
Confidence 33345567777777653 556667777543 2 58999998776655543 3666788 999999854
No 60
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=75.85 E-value=9.8 Score=31.68 Aligned_cols=123 Identities=8% Similarity=-0.006 Sum_probs=72.2
Q ss_pred eEEEEE--cCChhhHHHHHHHHHHhcc--CCCEEEEEEEecCCchh---hH---HHHHHHHHHHHHHHHhhhcCceEEEE
Q 030208 43 DILIAV--DHGPNSKHAFDWALIHLCR--LADTIHLVHAVSSVQNQ---IV---YDMSQGLMEKLAIEAMDVAMVRTKAR 112 (181)
Q Consensus 43 ~Ilv~v--d~s~~s~~a~~~a~~la~~--~~a~l~llhV~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~i~~~~~ 112 (181)
.+|+=+ |..-..-.++..|++.+.. .+..+..|++.++.... .. ..-..+.++++.+ .+...|+.. .
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~-~L~~~G~~L--~ 106 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDN-QLRKLNSRL--F 106 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHH-HHHHTTCCC--E
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHH-HHHHCCCeE--E
Confidence 335444 4445556788888877654 45679999998865321 11 1223344555333 333434544 4
Q ss_pred EecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 113 IVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 113 ~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
+..|++.+.|.+++++.+++.|+.-..-... . .-.-....+.+.... +++..+...
T Consensus 107 v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~-~-~~rd~~v~~~~~~~g-i~~~~~~~~ 162 (543)
T 2wq7_A 107 VVRGKPAEVFPRIFKSWRVEMLTFETDIEPY-S-VTRDAAVQKLAKAEG-VRVETHCSH 162 (543)
T ss_dssp EEESCHHHHHHHHHHHTTEEEEEEECCCSHH-H-HHHHHHHHHHHHHHT-CEEEEECCS
T ss_pred EEeCCHHHHHHHHHHHcCCCEEEEecCcCHH-H-HHHHHHHHHHHHHcC-CEEEEecCC
Confidence 4579999999999999999988887442211 1 111223345555556 777766543
No 61
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=75.54 E-value=20 Score=28.83 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=29.1
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecC
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~ 80 (181)
.++|++++++...|..++.++.+. +.++..+|+...
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g 40 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIG 40 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESS
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECC
Confidence 368999999999998888877653 678999998654
No 62
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=75.51 E-value=4.5 Score=28.52 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=61.4
Q ss_pred CCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChH
Q 030208 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (181)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~ 119 (181)
|.++|++++.++..+.++.+.+..+.+ .|.+++++-.-. ....... +.++. . .+ .+... ..+..
T Consensus 4 m~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~T~~--A~~fi~~---~~l~~----l---~~-~v~~~--~~~~~ 67 (175)
T 3qjg_A 4 MGENVLICLCGSVNSINISHYIIELKS-KFDEVNVIASTN--GRKFING---EILKQ----F---CD-NYYDE--FEDPF 67 (175)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEECTG--GGGGSCH---HHHHH----H---CS-CEECT--TTCTT
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEECcC--HHHHhhH---HHHHH----h---cC-CEEec--CCCCc
Confidence 458999999999999998888866655 477877665422 1111111 11111 1 11 11110 11121
Q ss_pred HHHHHHHHHhCCCEEEEeccCCCcccc---cccCchhhHHHhcCCCccEEEEcC
Q 030208 120 KVICKEAERLKPAAVVIGSRGRGLIQS---VLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~~~~~~~~~---~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
...+..++. +|++|+.-=..+.+.+ -+-.+....++.... +||+++|.
T Consensus 68 ~~hi~l~~~--aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~-~pvvl~Pa 118 (175)
T 3qjg_A 68 LNHVDIANK--HDKIIILPATSNTINKIANGICDNLLLTICHTAF-EKLSIFPN 118 (175)
T ss_dssp CCHHHHHHT--CSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCG-GGEEEEEC
T ss_pred cccccccch--hCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcC-CCEEEEec
Confidence 224445555 9999998654433322 222333444666678 99999984
No 63
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=75.00 E-value=16 Score=25.92 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=43.0
Q ss_pred HhhhcCceEEEEEecC-ChHHHHHHHHH---HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 101 AMDVAMVRTKARIVEG-DAAKVICKEAE---RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 101 ~~~~~~i~~~~~~~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
.++.-+++++..+..- ...+.+.++++ .++++.||.++-....+.+ -+...+. .||+-||-.-
T Consensus 35 ~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~-~PVIgVP~~~ 101 (183)
T 1o4v_A 35 ILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPG--------MVASITH-LPVIGVPVKT 101 (183)
T ss_dssp HHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCS-SCEEEEEECC
T ss_pred HHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHH--------HHHhccC-CCEEEeeCCC
Confidence 3345567788777653 55666777765 4568988888776655543 3666788 9999998643
No 64
>3brd_D Protein LIN-12; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans}
Probab=74.74 E-value=0.79 Score=21.75 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=17.6
Q ss_pred hhhhhhhhhhhcCCCCCCcc
Q 030208 6 EEEEVYSWREVNLPALSPTA 25 (181)
Q Consensus 6 ~~~~~~~~r~~~~P~l~~~~ 25 (181)
++|++...|.++.|+++++-
T Consensus 2 ~~~RsRKRr~i~A~vW~PPM 21 (29)
T 3brd_D 2 PGNRTRKRRMINASVWMPPM 21 (29)
T ss_pred ccccchhheeecccccCCCc
Confidence 68899999999999997764
No 65
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=74.52 E-value=16 Score=25.93 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=43.4
Q ss_pred HhhhcCceEEEEEecC-ChHHHHHHHHHH---hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 101 AMDVAMVRTKARIVEG-DAAKVICKEAER---LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 101 ~~~~~~i~~~~~~~~g-~~~~~I~~~a~~---~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
.++.-++.++..+..- ...+.+.+|+++ ++++.||.++-....+.+ -+...+. .||+-||-..
T Consensus 43 ~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~-~PVIgVP~~~ 109 (182)
T 1u11_A 43 LLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPG--------MCAAWTR-LPVLGVPVES 109 (182)
T ss_dssp HHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCS-SCEEEEEECC
T ss_pred HHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHH--------HHHhccC-CCEEEeeCCC
Confidence 3344567788777653 566777777764 568888888776655543 3666788 9999998643
No 66
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=72.94 E-value=17 Score=27.76 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=52.8
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec------
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~------ 115 (181)
++|+|++++...|..++..+.+. .|.++..+|+....... ++.+ ...+...+..+++....-..
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~g~~~~---~e~~----~~~~~~a~~lgi~~~vv~~~~~f~~~ 90 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNTGFLRK---GEPE----FVVKTFRDEFGMNLHYVDAQDRFFSA 90 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSCCCT---THHH----HHHHHHTTTTCCEEEEEECHHHHHHH
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcCCCCCh---HHHH----HHHHHHHHHcCCcEEEEECCHHHHHh
Confidence 68999999999998887777654 24678899986533211 1111 11111222334554433221
Q ss_pred --C--ChH-----------HHHHHHHHHhCCCEEEEeccC
Q 030208 116 --G--DAA-----------KVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 116 --g--~~~-----------~~I~~~a~~~~~dliV~g~~~ 140 (181)
| ++. ..+.++|++.+++.|+.|++.
T Consensus 91 l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~ 130 (308)
T 2dpl_A 91 LKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIA 130 (308)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCC
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCC
Confidence 1 221 234467888899999999764
No 67
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=71.98 E-value=16 Score=22.95 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=38.2
Q ss_pred EEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHH
Q 030208 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVIC 123 (181)
Q Consensus 44 Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~ 123 (181)
++|.+|..+-++.|+++...+ |+++.++ +++. .+..++++..+.. ..|+++.+.....+..+.+-
T Consensus 54 vvvvvddkewaekairfvksl----gaqvlii-iydq---------dqnrleefsrevr-rrgfevrtvtspddfkksle 118 (134)
T 2l69_A 54 VVVVVDDKEWAEKAIRFVKSL----GAQVLII-IYDQ---------DQNRLEEFSREVR-RRGFEVRTVTSPDDFKKSLE 118 (134)
T ss_dssp EEEECSSHHHHHHHHHHHHHH----CCCCEEE-EECS---------CHHHHHHHHHHHH-HTTCCEEEESSHHHHHHHHH
T ss_pred EEEEEccHHHHHHHHHHHHhc----CCeEEEE-EEeC---------chhHHHHHHHHHH-hcCceEEEecChHHHHHHHH
Confidence 344457666677777666554 5554333 2221 2334555444433 33566665443446677777
Q ss_pred HHHHHh
Q 030208 124 KEAERL 129 (181)
Q Consensus 124 ~~a~~~ 129 (181)
+..++.
T Consensus 119 rlirev 124 (134)
T 2l69_A 119 RLIREV 124 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777763
No 68
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=71.71 E-value=24 Score=24.94 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=28.1
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecC
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~ 80 (181)
++|+|++++...|..++..+.+. +.++..+|+...
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~ 38 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYN 38 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCC
Confidence 68999999999998888777554 467889998764
No 69
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=70.86 E-value=32 Score=26.04 Aligned_cols=109 Identities=7% Similarity=0.026 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecC--ChHHH--HHHHHH
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--DAAKV--ICKEAE 127 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g--~~~~~--I~~~a~ 127 (181)
...+++.-++.....|. +-+.+.-+. ......++..+.++...+.... .+.+- +-.| +..+. +.+.|+
T Consensus 19 D~~~l~~lv~~li~~Gv--~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g--rvpvi--aGvg~~~t~~ai~la~~A~ 92 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGT--DAILVCGTTGESPTLTFEEHEKVIEFAVKRAAG--RIKVI--AGTGGNATHEAVHLTAHAK 92 (294)
T ss_dssp CHHHHHHHHHHHHTTTC--CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSEEE--EECCCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC--CEEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEE--EecCCCCHHHHHHHHHHHH
Confidence 34555555554444443 333343322 2233345555555554433222 24433 2233 34333 356678
Q ss_pred HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 128 RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 128 ~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+.++|.+++..........--+=..-+.|+..++ .||++..
T Consensus 93 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilYn 133 (294)
T 2ehh_A 93 EVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVD-IPIIIYN 133 (294)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC-SCEEEEE
T ss_pred hcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 8899999888754332221111122256788888 9999874
No 70
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=70.45 E-value=5.3 Score=33.30 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=52.7
Q ss_pred cCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchh---hHH---HHHHHHHHHHHHHHhhhc---CceEEEEEecCChH
Q 030208 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ---IVY---DMSQGLMEKLAIEAMDVA---MVRTKARIVEGDAA 119 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~---~~~---~~~~~~l~~~~~~~~~~~---~i~~~~~~~~g~~~ 119 (181)
|..-..-.|+..|++.+. .+..|..|+|.++.... ... .-..+.|.++.+ .+... |+. ..+..|++.
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~-~L~~~~~~G~~--L~v~~G~~~ 88 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDD-QLQAATDGRGR--LLVFEGEPA 88 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHH-HGGGSCSSSSC--CEEEESCHH
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHH-HHHHhhcCCCe--EEEEeCCHH
Confidence 333444466766665543 45578899998864321 111 233344555333 33332 333 455679999
Q ss_pred HHHHHHHHHhCCCEEEEec
Q 030208 120 KVICKEAERLKPAAVVIGS 138 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~ 138 (181)
+.|.+++++.+++.|+.-.
T Consensus 89 ~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 89 YIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp HHHHHHHHHHCEEEECEEC
T ss_pred HHHHHHHHHcCCCEEEEcc
Confidence 9999999999999988754
No 71
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=70.41 E-value=14 Score=27.43 Aligned_cols=38 Identities=8% Similarity=-0.087 Sum_probs=30.8
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
+.+|+|++++...|..++..+.++... +..+.++|+..
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDt 78 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDT 78 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecC
Confidence 357999999999999999988877654 45788999844
No 72
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=70.03 E-value=31 Score=26.05 Aligned_cols=109 Identities=12% Similarity=-0.003 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecC--ChHHH--HHHHHH
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--DAAKV--ICKEAE 127 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g--~~~~~--I~~~a~ 127 (181)
...+++.-++.....|.. -+.+.-.. ......++..+.++...+.... .+.+- .-.| +..+. +.+.|+
T Consensus 19 D~~~l~~lv~~li~~Gv~--gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g--r~pvi--aGvg~~~t~~ai~la~~a~ 92 (289)
T 2yxg_A 19 DFDGLEENINFLIENGVS--GIVAVGTTGESPTLSHEEHKKVIEKVVDVVNG--RVQVI--AGAGSNCTEEAIELSVFAE 92 (289)
T ss_dssp CHHHHHHHHHHHHHTTCS--EEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSEEE--EECCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCC--EEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEE--EeCCCCCHHHHHHHHHHHH
Confidence 344454444444344432 23333322 2233345555555554433222 24433 2233 33333 456678
Q ss_pred HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 128 RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 128 ~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+.++|.+++..........--+=..-+.|+..++ .||++..
T Consensus 93 ~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~-lPiilYn 133 (289)
T 2yxg_A 93 DVGADAVLSITPYYNKPTQEGLRKHFGKVAESIN-LPIVLYN 133 (289)
T ss_dssp HHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS-SCEEEEE
T ss_pred hcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 8899999888754332221111122257788888 9999874
No 73
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=68.82 E-value=25 Score=28.01 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=28.4
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecC
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~ 80 (181)
++|++++++...|..++.++.+. ++.++..+|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCC
Confidence 46899999999998888877543 3678999998654
No 74
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=68.70 E-value=32 Score=26.25 Aligned_cols=126 Identities=11% Similarity=0.019 Sum_probs=63.4
Q ss_pred CCCCeEEEE----EcCChhhHHHHHHHHHHhccCCCEEEEEEEecC--CchhhHHHHHHHHHHHHHHHHhhhcCceEEEE
Q 030208 39 RRGRDILIA----VDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS--VQNQIVYDMSQGLMEKLAIEAMDVAMVRTKAR 112 (181)
Q Consensus 39 ~~~~~Ilv~----vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~ 112 (181)
.|++-|.++ ++...-...+++.-++.....|..= +.+.-+ .......++..+.++...+.... .+.+-.-
T Consensus 12 ~~~~Gv~~a~vTPf~dg~iD~~~l~~lv~~li~~Gv~g--l~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g--rvpViaG 87 (306)
T 1o5k_A 12 HMFRGVGTAIVTPFKNGELDLESYERLVRYQLENGVNA--LIVLGTTGESPTVNEDEREKLVSRTLEIVDG--KIPVIVG 87 (306)
T ss_dssp CCCSEEEEECCCCEETTEECHHHHHHHHHHHHHTTCCE--EEESSGGGTGGGCCHHHHHHHHHHHHHHHTT--SSCEEEE
T ss_pred cccCCeeeeeecCcCCCCcCHHHHHHHHHHHHHcCCCE--EEeCccccchhhCCHHHHHHHHHHHHHHhCC--CCeEEEc
Confidence 456666654 3312234455555555544445432 333222 22233445555556654443322 2444322
Q ss_pred EecCChHHH--HHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 113 IVEGDAAKV--ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 113 ~~~g~~~~~--I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+-..+..+. +.+.|++.++|.+++..........--+=..-+.|+..++ .||++.-
T Consensus 88 vg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilYn 145 (306)
T 1o5k_A 88 AGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTD-LGIVVYN 145 (306)
T ss_dssp CCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCS-SCEEEEE
T ss_pred CCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEe
Confidence 211134333 4566788899999888764333221111122256788888 9999874
No 75
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=68.20 E-value=35 Score=26.54 Aligned_cols=111 Identities=9% Similarity=-0.047 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHH--HHHHHHHh
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAERL 129 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~--I~~~a~~~ 129 (181)
...+++.-++.....|..= +.+.-.. ......++..+.++...+.... .+.+-.-+-..+..+. +.+.|++.
T Consensus 50 D~~~l~~lv~~li~~Gv~G--l~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g--rvpViaGvg~~st~eai~la~~A~~~ 125 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDG--LFFLGSGGEFSQLGAEERKAIARFAIDHVDR--RVPVLIGTGGTNARETIELSQHAQQA 125 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSC--EEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSCEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCE--EEeCccccChhhCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 4455555555444444322 3333222 2333445555556654443322 2444322211134333 45667888
Q ss_pred CCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 130 ~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
++|.+++..........--+=..-+.|+..++ .||++.-
T Consensus 126 Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~-lPiilYn 164 (343)
T 2v9d_A 126 GADGIVVINPYYWKVSEANLIRYFEQVADSVT-LPVMLYN 164 (343)
T ss_dssp TCSEEEEECCSSSCCCHHHHHHHHHHHHHTCS-SCEEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 99999888754332221111122256788888 9999874
No 76
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=67.43 E-value=5.7 Score=26.80 Aligned_cols=56 Identities=5% Similarity=0.014 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCC----CcccccccCchhhHHHhcCCCccEEEEcCCCC
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGR----GLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGT 173 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~----~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (181)
...+.|.+++++++++.||+|.... .+......-..+++|-.... .||..+-...+
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~-lpV~~~DERlT 99 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFG-VEVKLHDERLS 99 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHC-CCEEEEEEECC
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhC-CCEEEEcCCcC
Confidence 3478999999999999999995421 11111112344556666667 99999865544
No 77
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=66.41 E-value=12 Score=26.89 Aligned_cols=35 Identities=9% Similarity=0.038 Sum_probs=28.5
Q ss_pred eEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 43 ~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
+|++++.++..+.++.+.+..+.+..|.+++++-.
T Consensus 2 ~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~T 36 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQALREMPNVETHLVMS 36 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred EEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 79999999999999998887776544788877654
No 78
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=65.61 E-value=15 Score=28.65 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=46.1
Q ss_pred CChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHHh
Q 030208 50 HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERL 129 (181)
Q Consensus 50 ~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~ 129 (181)
....+++.+++|.++|+....+++++|=.+.-. .......+ ..++..++ ++.++..+ ..+....++.-= .
T Consensus 142 T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk--~t~glf~~----~~~eva~~-~I~~~~~~-vD~~~~~lv~~P--~ 211 (336)
T 1wpw_A 142 TRFASERIAKVGLNFALRRRKKVTCVHKANVMR--ITDGLFAE----ACRSVLKG-KVEYSEMY-VDAAAANLVRNP--Q 211 (336)
T ss_dssp EHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCT--THHHHHHH----HHHHHHTT-TSEEEEEE-HHHHHHHHHHCG--G
T ss_pred cHHHHHHHHHHHHHHHHHhCCeEEEEECCcchh--hhhHHHHH----HHHHHHHh-CceeEEEe-HHHHHHHHhhCc--c
Confidence 347789999999999988877888888544221 11222222 33333333 56666443 344444444433 3
Q ss_pred CCCEEEEec
Q 030208 130 KPAAVVIGS 138 (181)
Q Consensus 130 ~~dliV~g~ 138 (181)
++|.||...
T Consensus 212 ~FDVivt~N 220 (336)
T 1wpw_A 212 MFDVIVTEN 220 (336)
T ss_dssp GCSEEEECH
T ss_pred cceEEEEcC
Confidence 488777764
No 79
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=65.10 E-value=36 Score=25.18 Aligned_cols=69 Identities=9% Similarity=-0.014 Sum_probs=40.2
Q ss_pred HHHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 98 AIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 98 ~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
....+...|.++... -..-+.+.+++.+++.++|+|.+.......... +..+.+.+-+...++||++--
T Consensus 143 va~~L~~~G~~Vi~L-G~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~--~~~~i~~l~~~~~~~~v~vGG 211 (258)
T 2i2x_B 143 VTALLRANGYNVVDL-GRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYA--FKEVNDMLLENGIKIPFACGG 211 (258)
T ss_dssp HHHHHHHTTCEEEEE-EEECCSHHHHHHHHHHCCSEEEEECCCTTTTTH--HHHHHHHHHTTTCCCCEEEES
T ss_pred HHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHH--HHHHHHHHHhcCCCCcEEEEC
Confidence 334455556655422 123678889999999999999998764443332 233334443333337777754
No 80
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=63.34 E-value=23 Score=28.96 Aligned_cols=112 Identities=13% Similarity=-0.033 Sum_probs=62.2
Q ss_pred cCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchh--------hHH---HHHHHHHHHHHHHHhhhcCceEEEEEecCC
Q 030208 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--------IVY---DMSQGLMEKLAIEAMDVAMVRTKARIVEGD 117 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~--------~~~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~ 117 (181)
|..-..-.++..|++ .+..+..|.+.++.... ... .-..+.++++.+ .+...|+.. .+..|+
T Consensus 15 DLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~-~L~~~G~~L--~v~~g~ 87 (489)
T 1np7_A 15 DLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAE-SLQKVGNKL--LVTTGL 87 (489)
T ss_dssp CCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHH-HHHHTTCCE--EEEESC
T ss_pred CCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHH-HHHHCCCcE--EEEECC
Confidence 444445567777754 24578888998753211 111 223444555333 334434444 456799
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
+.+.|.+++++.+++.|+.-..-...... .-....+.+.... +++..+..
T Consensus 88 ~~~~l~~l~~~~~~~~V~~~~~~~~~~~~--rd~~v~~~l~~~g-i~~~~~~~ 137 (489)
T 1np7_A 88 PEQVIPQIAKQINAKTIYYHREVTQEELD--VERNLVKQLTILG-IEAKGYWG 137 (489)
T ss_dssp HHHHHHHHHHHTTEEEEEEECCCSHHHHH--HHHHHHHHHHHHT-CEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEecccCHHHHH--HHHHHHHHHHhcC-CeEEEecC
Confidence 99999999999999988887443221111 1122233444445 66665543
No 81
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=63.26 E-value=9 Score=31.77 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=52.1
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec------
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~------ 115 (181)
+++++++++...|..++..+.+. .|.+++.+|+...... .++.++. .+...+..+++....-..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g~~~---~~e~~~~----~~~~a~~lgi~~~vv~~~~~~~~~ 300 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTGLLR---LNEVDEV----LNVFQKHLGAKVICVDAKDRFMKA 300 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCSCSC---TTHHHHH----HHHHTTSSCCEEEEECCHHHHHSS
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccCCCC---hhHHHHH----HHHHHHHcCCcEEEEeChHHHHHh
Confidence 78999999999998877777554 3567999999553221 1112222 222334444554432211
Q ss_pred --C--ChHH-----------HHHHHHHHhCCCEEEEecc
Q 030208 116 --G--DAAK-----------VICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 116 --g--~~~~-----------~I~~~a~~~~~dliV~g~~ 139 (181)
| ++.. .+.++|++.+++.|+.|.+
T Consensus 301 l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~ 339 (527)
T 3tqi_A 301 LKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTI 339 (527)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCC
T ss_pred hcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEcccc
Confidence 1 2221 2345677889999999984
No 82
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=62.76 E-value=40 Score=24.26 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=46.7
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec--CC--
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GD-- 117 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~--g~-- 117 (181)
++|.|-+.++.+...++-.++.- ...+.+ ++-|+........ + +..+..++.+...-.. .+
T Consensus 8 ~ri~vl~SG~gsnl~all~~~~~-~~l~~~--I~~Visn~~~a~~-------l-----~~A~~~gIp~~~~~~~~~~~r~ 72 (209)
T 4ds3_A 8 NRVVIFISGGGSNMEALIRAAQA-PGFPAE--IVAVFSDKAEAGG-------L-----AKAEAAGIATQVFKRKDFASKE 72 (209)
T ss_dssp EEEEEEESSCCHHHHHHHHHHTS-TTCSEE--EEEEEESCTTCTH-------H-----HHHHHTTCCEEECCGGGSSSHH
T ss_pred ccEEEEEECCcHHHHHHHHHHHc-CCCCcE--EEEEEECCcccHH-------H-----HHHHHcCCCEEEeCccccCCHH
Confidence 57988888886665555444321 122334 4444443211111 1 2233445766532211 12
Q ss_pred -hHHHHHHHHHHhCCCEEEEeccC
Q 030208 118 -AAKVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~g~~~ 140 (181)
..+++++..++.++|++|+....
T Consensus 73 ~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 73 AHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp HHHHHHHHHHHHHCCSEEEESSCC
T ss_pred HHHHHHHHHHHhcCCCEEEEeccc
Confidence 13689999999999999999764
No 83
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=62.11 E-value=8.2 Score=32.18 Aligned_cols=84 Identities=10% Similarity=0.086 Sum_probs=51.4
Q ss_pred cCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchh------------hH---HHHHHHHHHHHHHHHhhhcCceEEEEE
Q 030208 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------------IV---YDMSQGLMEKLAIEAMDVAMVRTKARI 113 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~------------~~---~~~~~~~l~~~~~~~~~~~~i~~~~~~ 113 (181)
|..-..-.|+..|++ .+..|..|+|.++.... .. ..-..+.|.++.+ .+...|+. ..+
T Consensus 14 DLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~-~L~~~G~~--L~v 86 (537)
T 3fy4_A 14 GLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDS-SLKKLGSR--LLV 86 (537)
T ss_dssp CCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHH-HHHHTTCC--CEE
T ss_pred CcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHH-HHHHcCCc--eEE
Confidence 444445567766654 35679999998743111 11 1233344455333 33333443 345
Q ss_pred ecCChHHHHHHHHHHhCCCEEEEecc
Q 030208 114 VEGDAAKVICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 114 ~~g~~~~~I~~~a~~~~~dliV~g~~ 139 (181)
..|++.+.|.+++++.+++.|+.-..
T Consensus 87 ~~G~~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 87 FKGEPGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp EESCHHHHHHHHHTTSCEEEEEECCC
T ss_pred EECCHHHHHHHHHHHcCCCEEEEecc
Confidence 67999999999999999999988753
No 84
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=61.00 E-value=41 Score=23.75 Aligned_cols=37 Identities=19% Similarity=0.080 Sum_probs=28.4
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~ 81 (181)
+++|+|++++...|..++..+.+ .+.++..+|+....
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFGV 42 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECSS
T ss_pred CCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCCC
Confidence 47899999999988877765543 46789999986543
No 85
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=60.81 E-value=52 Score=24.94 Aligned_cols=128 Identities=11% Similarity=-0.050 Sum_probs=63.4
Q ss_pred CCCCCCeEEEEE----cC-ChhhHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceE
Q 030208 37 ERRRGRDILIAV----DH-GPNSKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRT 109 (181)
Q Consensus 37 ~~~~~~~Ilv~v----d~-s~~s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~ 109 (181)
.+-.++-|.+|+ +. ..-...+++..++.....|..= +.+.-.. ......++..+.++...+.... .+.+
T Consensus 9 ~~~~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~g--l~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g--rvpV 84 (301)
T 1xky_A 9 HMIDFGTIATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTA--IVVGGTTGESPTLTSEEKVALYRHVVSVVDK--RVPV 84 (301)
T ss_dssp -CCCCCSEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCE--EEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSCE
T ss_pred cccCCCceEEeeECcCCCCCCcCHHHHHHHHHHHHHcCCCE--EEECccccChhhCCHHHHHHHHHHHHHHhCC--CceE
Confidence 344456666552 21 1234455555555544445432 3333322 2233445555555654443322 2444
Q ss_pred EEEEecCChHH--HHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 110 KARIVEGDAAK--VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 110 ~~~~~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
-.-+-.-+..+ ++.+.|++.++|.+++..........--+=..-+.|+..++ .||++.-
T Consensus 85 iaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilYn 145 (301)
T 1xky_A 85 IAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTP-LPVMLYN 145 (301)
T ss_dssp EEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCS-SCEEEEE
T ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 32221113333 34566788899999888764332221111122257788888 9999874
No 86
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=60.76 E-value=22 Score=28.50 Aligned_cols=106 Identities=15% Similarity=0.023 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHhccCCCEEEEEEEecCCch---hhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHH
Q 030208 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQN---QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAER 128 (181)
Q Consensus 52 ~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~ 128 (181)
-..-.++..|++. + .+..|.+.++... ..-..-..+.++++. +.+...|+.. .+..|++.+.|.+++++
T Consensus 14 l~Dn~aL~~A~~~----~-~v~~vfi~d~~~~~~~~~r~~fl~~sL~~l~-~~L~~~g~~l--~~~~g~~~~~l~~l~~~ 85 (420)
T 2j07_A 14 LHDHPALLEALAR----G-PVVGLVVLDPNNLKTTPRRRAWFLENVRALR-EAYRARGGAL--WVLEGLPWEKVPEAARR 85 (420)
T ss_dssp STTCHHHHHHHTT----S-CEEEEEEECHHHHSSCHHHHHHHHHHHHHHH-HHHHHTTCCE--EEEESCHHHHHHHHHHH
T ss_pred ccccHHHHHHHhC----C-CEEEEEEECCccccCCHHHHHHHHHHHHHHH-HHHHHCCCeE--EEEeCCHHHHHHHHHHH
Confidence 3344566666542 2 6888888874321 111122233444433 3333434544 45679999999999999
Q ss_pred hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 129 LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 129 ~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
.+++.|+.-..-...... ..++|..... +++..+...
T Consensus 86 ~~~~~v~~~~~~~~~~~~-----rd~~v~~~l~-i~~~~~~~~ 122 (420)
T 2j07_A 86 LKAKAVYALTSHTPYGRY-----RDGRVREALP-VPLHLLPAP 122 (420)
T ss_dssp TTCSEEEEECCCSHHHHH-----HHHHHHHHCS-SCEEEECCC
T ss_pred cCCCEEEEecccChhHHH-----HHHHHHHHcC-CeEEEeCCC
Confidence 999999986543322111 1123333335 888777643
No 87
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=60.40 E-value=56 Score=25.17 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=56.6
Q ss_pred EEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHH
Q 030208 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVIC 123 (181)
Q Consensus 44 Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~ 123 (181)
.++....+......+..| ...|..++++ |.+...... ..+ ++ +.+...|++++. ...+....++
T Consensus 124 ~ILTh~~S~tv~~~l~~A----~~~gk~~~V~-v~EsrP~~q----G~~----la-~~L~~~gI~vtl--i~Dsa~~~~m 187 (315)
T 3ecs_A 124 TILTHAYSRVVLRVLEAA----VAAKKRFSVY-VTESQPDLS----GKK----MA-KALCHLNVPVTV--VLDAAVGYIM 187 (315)
T ss_dssp EEEECSCCHHHHHHHHHH----HTTTCCEEEE-EECCTTTTH----HHH----HH-HHHHTTTCCEEE--ECGGGHHHHG
T ss_pred EEEEcCCcHHHHHHHHHH----HHcCCeEEEE-EecCCCcch----HHH----HH-HHHHHcCCCEEE--EehhHHHHHH
Confidence 444455554444444433 3346666654 444332211 111 12 223345677754 3445554444
Q ss_pred HHHHHhCCCEEEEeccCC---CcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 124 KEAERLKPAAVVIGSRGR---GLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 124 ~~a~~~~~dliV~g~~~~---~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
+ ++|.+++|+..- ++.-. -.|+..-.++.+..++||+|+-+.+
T Consensus 188 ~-----~vd~VivGAd~i~~nG~v~n-kiGT~~iAl~Ak~~~vP~~V~a~~~ 233 (315)
T 3ecs_A 188 E-----KADLVIVGAEGVVENGGIIN-KIGTNQMAVCAKAQNKPFYVVAESF 233 (315)
T ss_dssp G-----GCSEEEEECSEECTTSCEEE-ETTHHHHHHHHHHTTCCEEEECCGG
T ss_pred H-----hCCEEEECceEEecCCCeee-hhhhHHHHHHHHHhCCCEEEEeccc
Confidence 3 599999999862 22222 3577666665555559999995443
No 88
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=60.13 E-value=56 Score=25.03 Aligned_cols=127 Identities=14% Similarity=0.041 Sum_probs=64.4
Q ss_pred CCCCCeEEEEE----c-CChhhHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEE
Q 030208 38 RRRGRDILIAV----D-HGPNSKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTK 110 (181)
Q Consensus 38 ~~~~~~Ilv~v----d-~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~ 110 (181)
..+++-|.+++ + ...-...+++..++.....|. .-+.+.-.. ......++..+.++...+.... .+.+-
T Consensus 20 ~~~~~Gv~~alvTPf~~dg~iD~~~l~~li~~li~~Gv--~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g--rvpVi 95 (315)
T 3si9_A 20 GSMLKGAVTALITPFDDNGAIDEKAFCNFVEWQITQGI--NGVSPVGTTGESPTLTHEEHKRIIELCVEQVAK--RVPVV 95 (315)
T ss_dssp -CCCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTC--SEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSCBE
T ss_pred CccCCceeEeeECCCCCCCCcCHHHHHHHHHHHHHcCC--CEEEeCccccCccccCHHHHHHHHHHHHHHhCC--CCcEE
Confidence 45677777763 2 112344555555555444453 223333322 2233345555555554443322 24443
Q ss_pred EEEecCChH--HHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 111 ARIVEGDAA--KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 111 ~~~~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
.-+-.-+.. -++.+.|++.++|.+++..........--+=..-+.|+..+. .||++..
T Consensus 96 aGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~-lPiilYn 155 (315)
T 3si9_A 96 AGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAIS-IPIIIYN 155 (315)
T ss_dssp EECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS-SCEEEEE
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCC-CCEEEEe
Confidence 222111333 344556888899999988754332221111122357888888 9999874
No 89
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=59.87 E-value=31 Score=28.50 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=56.0
Q ss_pred CeEEEEE--cCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchh---------hH---HHHHHHHHHHHHHHHhhhcCc
Q 030208 42 RDILIAV--DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ---------IV---YDMSQGLMEKLAIEAMDVAMV 107 (181)
Q Consensus 42 ~~Ilv~v--d~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~---------~~---~~~~~~~l~~~~~~~~~~~~i 107 (181)
+.+|+=+ |..-..-.++..|++. +..+..|.+.+..... .. ..-..+.++++.+ .+...|+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~-~L~~~G~ 114 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRK-NLMKRGL 114 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHH-HHHHTTC
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 4455544 4445555677777553 3478899998753211 11 1223444555433 3334345
Q ss_pred eEEEEEecCChHHHHHHHHHHhCCCEEEEecc
Q 030208 108 RTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 108 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 139 (181)
.. .+..|++.+.|.+++++.+++.|+.-..
T Consensus 115 ~L--~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 144 (525)
T 2j4d_A 115 NL--LIRSGKPEEILPSLAKDFGARTVFAHKE 144 (525)
T ss_dssp CC--EEEESCHHHHHHHHHHHHTCSEEEEECC
T ss_pred eE--EEEeCCHHHHHHHHHHHcCCCEEEEecc
Confidence 44 4467999999999999999999988743
No 90
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=59.86 E-value=11 Score=27.00 Aligned_cols=111 Identities=11% Similarity=0.089 Sum_probs=59.1
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec-CChHH
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GDAAK 120 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~-g~~~~ 120 (181)
++|++++.++..+.++.+.+..+.+ .|.+++++-.-. +.+.+....-+ ...+ .+...... +.. .
T Consensus 9 k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~~----------A~~fi~~~~~~--~l~~-~v~~~~~~~~~~-~ 73 (194)
T 1p3y_1 9 KKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVMTKT----------AEDLIPAHTVS--YFCD-HVYSEHGENGKR-H 73 (194)
T ss_dssp CEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEECHH----------HHHHSCHHHHG--GGSS-EEECTTCSSSCC-C
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEchh----------HHHHHHHHHHH--HhcC-CEeccccccCCC-c
Confidence 8999999999988888888877754 477777665311 11111111101 1111 11100000 011 1
Q ss_pred HHHHHHHHhCCCEEEEeccCCCccccc---ccCchhhHHHhcCCCccEEEEcC
Q 030208 121 VICKEAERLKPAAVVIGSRGRGLIQSV---LQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 121 ~I~~~a~~~~~dliV~g~~~~~~~~~~---~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
.=++.++. +|++|+.-=..+.+.++ +-.+....++.... +||+++|.
T Consensus 74 ~hi~l~~~--aD~~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~-~pvvl~Pa 123 (194)
T 1p3y_1 74 SHVEIGRW--ADIYCIIPATANILGQTANGVAMNLVATTVLAHP-HNTIFFPN 123 (194)
T ss_dssp CHHHHHHH--CSEEEEEEECHHHHHHHHTTCCSSHHHHHHHHSS-SCCEEEEC
T ss_pred Cccccccc--CCEEEEeCCCHHHHHHHHhhccCCHHHHHHHHcC-CCEEEEEC
Confidence 11233455 99999986544333322 22333344445577 99999986
No 91
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=59.22 E-value=56 Score=25.51 Aligned_cols=63 Identities=17% Similarity=0.101 Sum_probs=40.0
Q ss_pred hhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCC---CcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR---GLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 102 ~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~---~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
+.+.|++++. ...+.... +.++.++|.+++|+..- ++.- .-.|+..-.++.+..++|++|+-+
T Consensus 204 L~~~GI~vtl--I~Dsa~~~---~M~~~~Vd~VivGAd~V~aNG~v~-NKiGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 204 LMKDGIEVYV--ITDNMAGW---LMKRGLIDAVVVGADRIALNGDTA-NKIGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHTTTCEEEE--ECGGGHHH---HHHTTCCSEEEECCSEEETTSCEE-EETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHhCCCCEEE--EehhHHHH---HhhcCCCCEEEECccEEecCCCEE-ecccHHHHHHHHHHcCCCEEEecc
Confidence 3445677764 33444433 33456799999999863 2222 236888777777666699999843
No 92
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=58.13 E-value=55 Score=25.00 Aligned_cols=81 Identities=12% Similarity=0.021 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHH--HHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCC
Q 030208 85 IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKT 162 (181)
Q Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~--I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~ 162 (181)
...++..+.++...+.... .+.+-.-+-. +..+. +.+.|++.++|.+++..........--+=..-+.|+..++
T Consensus 62 Ls~eEr~~vi~~~~~~~~g--rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~- 137 (314)
T 3d0c_A 62 LTIEEAKQVATRVTELVNG--RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALD- 137 (314)
T ss_dssp SCHHHHHHHHHHHHHHHTT--SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSS-
T ss_pred CCHHHHHHHHHHHHHHhCC--CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-
Confidence 3345555555554443322 3554443333 54444 4667888999999988764332221111122257788888
Q ss_pred ccEEEEc
Q 030208 163 APIIVVP 169 (181)
Q Consensus 163 ~pVlvv~ 169 (181)
.||++.-
T Consensus 138 lPiilYn 144 (314)
T 3d0c_A 138 APSIIYF 144 (314)
T ss_dssp SCEEEEE
T ss_pred CCEEEEe
Confidence 9999976
No 93
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=58.00 E-value=33 Score=27.97 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHHHhccCCCEEEEEEEecCCch------hhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHH
Q 030208 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQN------QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKE 125 (181)
Q Consensus 52 ~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~ 125 (181)
-..-.++..|++.. ..+..|++.++... ..-..-..+.+.++.++ +...|+.. .+..|++.+.|.++
T Consensus 15 l~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~-L~~~G~~L--~v~~g~~~~~l~~l 87 (484)
T 1owl_A 15 LSDNIGLAAARAQS----AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR-YQQAGSRL--LLLQGDPQHLIPQL 87 (484)
T ss_dssp SSSCHHHHHHHHHC----SCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHH-HHHHTSCE--EEEESCHHHHHHHH
T ss_pred cchhHHHHHHHhcC----CCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHH-HHHCCCeE--EEEeCCHHHHHHHH
Confidence 34446677776532 26888888874321 11112234445553333 33334554 44679999999999
Q ss_pred HHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 126 AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 126 a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
+++.+++.|+.-..-...... .-....+.+.... +++..+...
T Consensus 88 ~~~~~~~~v~~~~~~~p~~~~--rd~~v~~~l~~~g-i~~~~~~~~ 130 (484)
T 1owl_A 88 AQQLQAEAVYWNQDIEPYGRD--RDGQVAAALKTAG-IRAVQLWDQ 130 (484)
T ss_dssp HHHTTCSEEEEECCCSHHHHH--HHHHHHHHHHHTT-CEEEEECCS
T ss_pred HHHcCCCEEEEeccCChhHHH--HHHHHHHHHHHcC-cEEEEecCC
Confidence 999999999886543322111 1233345556667 888887654
No 94
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=57.73 E-value=38 Score=22.34 Aligned_cols=42 Identities=17% Similarity=-0.012 Sum_probs=23.2
Q ss_pred HHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCC
Q 030208 99 IEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 99 ~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
...++..|.++... -...+.+.+++.+++.++|+|.+.....
T Consensus 24 ~~~l~~~G~~Vi~l-G~~~p~e~~v~~a~~~~~d~v~lS~~~~ 65 (137)
T 1ccw_A 24 DHAFTNAGFNVVNI-GVLSPQELFIKAAIETKADAILVSSLYG 65 (137)
T ss_dssp HHHHHHTTCEEEEE-EEEECHHHHHHHHHHHTCSEEEEEECSS
T ss_pred HHHHHHCCCEEEEC-CCCCCHHHHHHHHHhcCCCEEEEEecCc
Confidence 34444445444321 1124667777777777777777776543
No 95
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=57.70 E-value=19 Score=26.78 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
.-+++.+++.+.|++|+.+...... ...-++.++.... +|.+|+..
T Consensus 54 ~~~~~~~~~~~pDfvI~isPN~a~P----GP~~ARE~l~~~~-iP~IvI~D 99 (283)
T 1qv9_A 54 EMALDIAEDFEPDFIVYGGPNPAAP----GPSKAREMLADSE-YPAVIIGD 99 (283)
T ss_dssp HHHHHHHHHHCCSEEEEECSCTTSH----HHHHHHHHHHTSS-SCEEEEEE
T ss_pred HHhhhhhhhcCCCEEEEECCCCCCC----CchHHHHHHHhCC-CCEEEEcC
Confidence 3445566889999999998754432 2456678888888 99999854
No 96
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=57.13 E-value=68 Score=25.36 Aligned_cols=93 Identities=9% Similarity=0.071 Sum_probs=56.5
Q ss_pred eEEEEEcCChhhHHHHHHHHHHhccCCC---------E-----EEEEEEe-cCCchhhHHHHHHHHHHHHHHHHhhhcCc
Q 030208 43 DILIAVDHGPNSKHAFDWALIHLCRLAD---------T-----IHLVHAV-SSVQNQIVYDMSQGLMEKLAIEAMDVAMV 107 (181)
Q Consensus 43 ~Ilv~vd~s~~s~~a~~~a~~la~~~~a---------~-----l~llhV~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 107 (181)
+|-+.|.....|+.-.+.+.++.+.+|. . =.++|+. +.+. ..+.+..++... ......+.
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F----~se~~ttI~~I~-~~a~~~gy 88 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENF----TSNIDSAINKIV-KLADDKEV 88 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTG----GGGHHHHHHHHH-GGGGCTTE
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCc----hHHHHHHHHHHH-HHhhcCCC
Confidence 7889999888999999999999888764 1 2477773 3222 222333344432 33334344
Q ss_pred eEEEEEecCChHHHHHHHHHHhCCCEEEEeccC
Q 030208 108 RTKARIVEGDAAKVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 108 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 140 (181)
++-.......-....++.+++...|.|+++...
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~ 121 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPM 121 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSC
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccc
Confidence 433222222223677888998899988877643
No 97
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=56.82 E-value=61 Score=24.47 Aligned_cols=126 Identities=10% Similarity=-0.013 Sum_probs=63.5
Q ss_pred CCCCeEEEEE----c-CChhhHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEE
Q 030208 39 RRGRDILIAV----D-HGPNSKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKA 111 (181)
Q Consensus 39 ~~~~~Ilv~v----d-~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~ 111 (181)
.+++-|.+++ + ...-...+++.-++.....|.. -+.+.-.. ......++..+.++...+.... .+.+-.
T Consensus 6 ~~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~--gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g--rvpvia 81 (297)
T 3flu_A 6 TMLQGSLVALITPMNQDGSIHYEQLRDLIDWHIENGTD--GIVAVGTTGESATLSVEEHTAVIEAVVKHVAK--RVPVIA 81 (297)
T ss_dssp CCCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCC--EEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSCEEE
T ss_pred cccCeeEEeeeccCCCCCCcCHHHHHHHHHHHHHcCCC--EEEeCccccCcccCCHHHHHHHHHHHHHHhCC--CCcEEE
Confidence 4556666553 2 1123445555555554444533 33333322 2233345555555554443322 244433
Q ss_pred EEecCChH--HHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 112 RIVEGDAA--KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 112 ~~~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
-+-.-+.. -++.+.|++.++|.+++..........--+=..-+.|+..+. .||++..
T Consensus 82 Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~-lPiilYn 140 (297)
T 3flu_A 82 GTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATS-IPMIIYN 140 (297)
T ss_dssp ECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC-SCEEEEE
T ss_pred eCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEE
Confidence 22111333 334456888899999988754332221111123367888888 9999874
No 98
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=55.82 E-value=63 Score=24.31 Aligned_cols=111 Identities=13% Similarity=-0.058 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecC--CchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHH--HHHHHHHHh
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSS--VQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAERL 129 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~--~I~~~a~~~ 129 (181)
...+++.-++.....|.. -+.+.-+ .......++..+.++...+.... .+.+-.-+-..+..+ ++.+.|++.
T Consensus 19 D~~~l~~lv~~li~~Gv~--gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g--r~pviaGvg~~~t~~ai~la~~A~~~ 94 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSF--GLVPCGTTGESPTLSKSEHEQVVEITIKTANG--RVPVIAGAGSNSTAEAIAFVRHAQNA 94 (292)
T ss_dssp CHHHHHHHHHHHHHTTCS--EEETTSGGGTGGGSCHHHHHHHHHHHHHHHTT--SSCBEEECCCSSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCC--EEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEEEecCCccHHHHHHHHHHHHHc
Confidence 334454444444334432 2333222 12233345555555554443322 244432222223333 345668888
Q ss_pred CCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 130 ~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
++|.+++..........--+=..-+.|+..++ .||++..
T Consensus 95 Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~-lPiilYn 133 (292)
T 2vc6_A 95 GADGVLIVSPYYNKPTQEGIYQHFKAIDAAST-IPIIVYN 133 (292)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS-SCEEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEe
Confidence 99999888764332221111122257788888 9999864
No 99
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=55.76 E-value=24 Score=28.56 Aligned_cols=106 Identities=12% Similarity=0.058 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCCch-------hhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHH
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSVQN-------QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEA 126 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a 126 (181)
.-.|+..|++ .+..|..|+|.++... ..-..-..+.++++.+ .+...|+.. .+..|++.+.|.+++
T Consensus 15 DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~-~L~~~G~~L--~v~~g~~~~~l~~l~ 87 (440)
T 2e0i_A 15 DNTGLNYALS----ECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDD-ELRKKGSRL--NVFFGEAEKVVSRFF 87 (440)
T ss_dssp SCHHHHHHHH----HSSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHH-HHHTTTCCC--EEEESCHHHHHHHHC
T ss_pred hhHHHHHHHh----cCCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHH-HHHHcCCeE--EEEECCHHHHHHHHH
Confidence 3456666665 2568999999874311 1111223444555333 333334444 446799999999999
Q ss_pred HHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 127 ERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 127 ~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
+ +++.|+.-..-..... -.-....+.+.... +++..+...
T Consensus 88 ~--~~~~v~~~~~~~~~~~--~rd~~v~~~l~~~g-i~~~~~~~~ 127 (440)
T 2e0i_A 88 N--KVDAIYVNEDYTPFSI--SRDEKIRKVCEENG-IEFKAYEDY 127 (440)
T ss_dssp T--TCSEEEEECCCSHHHH--HHHHHHHHHHHTTT-CEEEEECCS
T ss_pred c--CCCEEEEecccChHHH--HHHHHHHHHHHHcC-ceEEEecCC
Confidence 9 8999888644322211 11233345556666 888777654
No 100
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=55.54 E-value=11 Score=27.27 Aligned_cols=37 Identities=11% Similarity=-0.076 Sum_probs=27.5
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.++|++++.++..+.++.+.+..+.+..|.+++++-.
T Consensus 19 ~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~T 55 (206)
T 1qzu_A 19 KFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTT 55 (206)
T ss_dssp SEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEEC
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 4789999999999888888887775525777776643
No 101
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=55.27 E-value=64 Score=24.26 Aligned_cols=109 Identities=7% Similarity=-0.086 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecC-ChHHHH---HHHHH
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG-DAAKVI---CKEAE 127 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g-~~~~~I---~~~a~ 127 (181)
...+++.-++.....|.. -+.+.-.. ......++..+.++...+.... .+.+- .-.| +-.++. .+.|+
T Consensus 20 D~~~l~~lv~~li~~Gv~--gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g--r~pvi--aGvg~~~t~~ai~la~~a~ 93 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTS--AIVSVGTTGESATLNHDEHADVVMMTLDLADG--RIPVI--AGTGANATAEAISLTQRFN 93 (292)
T ss_dssp CHHHHHHHHHHHHHHTCC--EEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSCEE--EECCCSSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCC--EEEECccccchhhCCHHHHHHHHHHHHHHhCC--CCcEE--EecCCccHHHHHHHHHHHH
Confidence 344454444444333432 23333322 2233445555555654443322 24433 2233 333333 44567
Q ss_pred HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 128 RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 128 ~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+.++|.+++..........--+=..-+.|+..++ .||++..
T Consensus 94 ~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~-lPiilYn 134 (292)
T 2ojp_A 94 DSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTD-LPQILYN 134 (292)
T ss_dssp TSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCS-SCEEEEC
T ss_pred hcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 7789998887754332221111122256788888 9999874
No 102
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=54.75 E-value=6.2 Score=26.98 Aligned_cols=56 Identities=7% Similarity=0.007 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCC-ccccc---ccCchhhHHHhcCCCccEEEEcCCCC
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGRG-LIQSV---LQGSVGEYCLHHCKTAPIIVVPGKGT 173 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~~-~~~~~---~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (181)
...+.|.+++++++++.||+|..-.. +-... -.-.++..+..... +||..+-..+.
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~-lpV~~vDEr~T 101 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYN-VPVVLWDERLT 101 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHC-SCEEEECCSSC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhC-CCEEEecCCCC
Confidence 56789999999999999999954211 11110 01123335555567 99999876554
No 103
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=54.42 E-value=14 Score=26.62 Aligned_cols=36 Identities=6% Similarity=0.010 Sum_probs=28.0
Q ss_pred CCeEEEEEcCChhhH-HHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSK-HAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~-~a~~~a~~la~~~~a~l~llhV 77 (181)
.++|++++.++-.+. ++++.+..+.+ .|.+++++-.
T Consensus 7 ~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv~T 43 (201)
T 3lqk_A 7 GKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPFVT 43 (201)
T ss_dssp TCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEECS
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEEEC
Confidence 489999999998877 78888876655 4778776654
No 104
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=54.13 E-value=68 Score=24.17 Aligned_cols=87 Identities=11% Similarity=-0.053 Sum_probs=46.4
Q ss_pred CCeEEEEEcCC---hhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCC
Q 030208 41 GRDILIAVDHG---PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGD 117 (181)
Q Consensus 41 ~~~Ilv~vd~s---~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~ 117 (181)
..+||+-.... ..+..+++++.+.+...|.++.++.+.+.+-.....+.......++.+.+....++-+-+=+..++
T Consensus 58 ~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~s 137 (279)
T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQ 137 (279)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTE
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccC
Confidence 35665544332 357788898888888788999999886543111100011223444444444444444444445565
Q ss_pred hHHHHHHHHH
Q 030208 118 AAKVICKEAE 127 (181)
Q Consensus 118 ~~~~I~~~a~ 127 (181)
+...+-.+.+
T Consensus 138 ipg~LKn~ID 147 (279)
T 2fzv_A 138 ITSVMKAQID 147 (279)
T ss_dssp ECHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 4444433333
No 105
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=54.05 E-value=69 Score=24.21 Aligned_cols=111 Identities=12% Similarity=-0.009 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecC--CchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHH--HHHHHHHh
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSS--VQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAERL 129 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~--I~~~a~~~ 129 (181)
...+++.-++.....|..= +.+.-+ .......++..+.++...+.... .+.+-.-+-..+..+. +.+.|++.
T Consensus 19 D~~~l~~lv~~li~~Gv~g--i~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~la~~A~~~ 94 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHG--LVPVGTTGESPTLTEEEHKRVVALVAEQAQG--RVPVIAGAGSNNPVEAVRYAQHAQQA 94 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSE--EECSSGGGTGGGSCHHHHHHHHHHHHHHHTT--SSCBEEECCCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCE--EEECccccchhhCCHHHHHHHHHHHHHHhCC--CCeEEEccCCCCHHHHHHHHHHHHhc
Confidence 3344544444443344322 333222 22233345555555554443322 2444322211133333 45667888
Q ss_pred CCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 130 ~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
++|.+++..........--+=..-+.|+..++ .||++.-
T Consensus 95 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilYn 133 (297)
T 2rfg_A 95 GADAVLCVAGYYNRPSQEGLYQHFKMVHDAID-IPIIVYN 133 (297)
T ss_dssp TCSEEEECCCTTTCCCHHHHHHHHHHHHHHCS-SCEEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 99999988764332221111122256788888 9999874
No 106
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=54.04 E-value=43 Score=26.08 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=46.6
Q ss_pred cCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHHH
Q 030208 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAE 127 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a~ 127 (181)
-....+++.+++|.++|+....+|+++|=.+-- +..+...++..++..++ .++.++..+ ..+....++.-=+
T Consensus 151 ~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvl------k~s~glf~~~~~eva~eyp~i~~~~~~-vD~~~mqlv~~P~ 223 (337)
T 1w0d_A 151 NTAFGVRRVVADAFERARRRRKHLTLVHKTNVL------TFAGGLWLRTVDEVGECYPDVEVAYQH-VDAATIHMITDPG 223 (337)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTS------HHHHHHHHHHHHHHHTTCTTSEEEEEE-HHHHHHHHHHCGG
T ss_pred EcHHHHHHHHHHHHHHHHHcCCeEEEEECCccc------hhhhHHHHHHHHHHHHHCCceEEEEEE-HHHHHHHHhhCcc
Confidence 344778999999999998887788888853321 11222333333333322 345655433 3444444444333
Q ss_pred HhCCCEEEEec
Q 030208 128 RLKPAAVVIGS 138 (181)
Q Consensus 128 ~~~~dliV~g~ 138 (181)
++|.||...
T Consensus 224 --~FDVivt~N 232 (337)
T 1w0d_A 224 --RFDVIVTDN 232 (337)
T ss_dssp --GCSEEEECH
T ss_pred --cccEEEECc
Confidence 488777764
No 107
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=54.03 E-value=85 Score=25.26 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=28.1
Q ss_pred CCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecC
Q 030208 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (181)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~ 80 (181)
.|.++|+|++++.-.|.-++.++.+- |.+++.+++...
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke~----G~eViavt~d~G 49 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCEK----GFDVIAYVANVG 49 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEESS
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHHC----CCeEEEEEEEcC
Confidence 45688999999998887777776432 778888888543
No 108
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=52.84 E-value=71 Score=24.01 Aligned_cols=112 Identities=7% Similarity=-0.050 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHhccCCCEEEEEEEecC--CchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHH--HHHHHHHH
Q 030208 53 NSKHAFDWALIHLCRLADTIHLVHAVSS--VQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAER 128 (181)
Q Consensus 53 ~s~~a~~~a~~la~~~~a~l~llhV~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~--~I~~~a~~ 128 (181)
-...+++.-++.....|.. -+.+.-. .......++..+.++...+.... .+.+-.-+-.-+..+ ++.+.|++
T Consensus 19 iD~~~l~~lv~~li~~Gv~--gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g--r~pvi~Gvg~~~t~~ai~la~~a~~ 94 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTD--AIIVCGTTGEATTMTETERKETIKFVIDKVNK--RIPVIAGTGSNNTAASIAMSKWAES 94 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCC--EEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT--SSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCC--EEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEEEeCCcccHHHHHHHHHHHHh
Confidence 3445555555554444533 2333322 22233445555555654443322 244432221113333 34566788
Q ss_pred hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 129 LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 129 ~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
.++|.+++..........--+=..-+.|+..++ .||++..
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~-lPiilYn 134 (291)
T 3a5f_A 95 IGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVS-TPIIIYN 134 (291)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCC-SCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 899999888754322211000011134566777 9999874
No 109
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=52.81 E-value=66 Score=25.18 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=41.0
Q ss_pred hhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccC--CCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRG--RGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 102 ~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~--~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
+...|++++.. ..+.+..+ .++.++|++++|+.. .++ --.-.|+..-.++.+..++|++|+-+.
T Consensus 202 L~~~GI~vtlI--~Dsa~~~~---M~~~~Vd~VivGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~~ 267 (351)
T 1t5o_A 202 LMEDGIDVTLI--TDSMVGIV---MQKGMVDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPK 267 (351)
T ss_dssp HHHTTCCEEEE--CGGGHHHH---HHTTCCSEEEECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHhCCCCEEEE--ehhHHHHH---hhcCCCCEEEECccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCcc
Confidence 34457887643 34444333 345679999999986 333 222368888877776666999998543
No 110
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=52.48 E-value=78 Score=24.39 Aligned_cols=111 Identities=13% Similarity=0.001 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHH--HHHHHHHh
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAERL 129 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~--I~~~a~~~ 129 (181)
...+++..++.....|.. -+.+.-.. ......++..+.++...+.... .+.+-.-+-..+..+. +.+.|++.
T Consensus 53 D~~~l~~lv~~li~~Gv~--Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g--rvpViaGvg~~st~eai~la~~A~~~ 128 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVD--SVGILGSTGIYMYLTREERRRAIEAAATILRG--RRTLMAGIGALRTDEAVALAKDAEAA 128 (332)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC--EEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 445555554544334432 23333322 2233445555555554433322 2444332222234333 45668888
Q ss_pred CCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 130 ~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
++|.+++..........--+=..-+.|+..++ .||++.-
T Consensus 129 Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~-lPiilYn 167 (332)
T 2r8w_A 129 GADALLLAPVSYTPLTQEEAYHHFAAVAGATA-LPLAIYN 167 (332)
T ss_dssp TCSEEEECCCCSSCCCHHHHHHHHHHHHHHCS-SCEEEEC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 99999988764433221111122256788888 9999874
No 111
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=52.06 E-value=21 Score=25.74 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=27.4
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.++|++++.++..+.++.+.+..+.+. + +++++-.
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~~-g-~V~vv~T 53 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTEW-A-EVRAVVT 53 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHTT-S-EEEEEEC
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhcC-C-CEEEEEc
Confidence 489999999999888888888777654 5 6666553
No 112
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=52.05 E-value=73 Score=23.95 Aligned_cols=109 Identities=10% Similarity=-0.040 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhcc-CCCEEEEEEEecC--CchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecC--ChHHH--HHHHH
Q 030208 54 SKHAFDWALIHLCR-LADTIHLVHAVSS--VQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--DAAKV--ICKEA 126 (181)
Q Consensus 54 s~~a~~~a~~la~~-~~a~l~llhV~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g--~~~~~--I~~~a 126 (181)
...+++.-++.... .|.. -+.+.-. .......++..+.++...+.... .+.+- .-.| +..+. +.+.|
T Consensus 22 D~~~l~~lv~~li~~~Gv~--gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g--rvpvi--aGvg~~~t~~ai~la~~a 95 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVD--GLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD--QIALI--AQVGSVNLKEAVELGKYA 95 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCS--EEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT--SSEEE--EECCCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCc--EEEeCccccchhhCCHHHHHHHHHHHHHHhCC--CCeEE--EecCCCCHHHHHHHHHHH
Confidence 34555544454433 4432 2333222 22233345555555554433222 24433 2233 33333 45667
Q ss_pred HHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 127 ERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 127 ~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
++.++|.+++..........--+=..-+.|+..++ .||++..
T Consensus 96 ~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~-lPiilYn 137 (293)
T 1f6k_A 96 TELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETG-SNMIVYS 137 (293)
T ss_dssp HHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHC-CCEEEEE
T ss_pred HhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEE
Confidence 88899999888764332221111122256777888 9999874
No 113
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=52.01 E-value=66 Score=23.38 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=36.9
Q ss_pred HHHHHhhhcCceEEEEEecCChHHHHHHHHH---HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 97 LAIEAMDVAMVRTKARIVEGDAAKVICKEAE---RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 97 ~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
++++...+.+...+..+..++..+++...-+ ..++|.||-. |+++..|=++.. +||+-++-+.
T Consensus 27 ~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------------Ggta~~Lr~~~~-iPVV~I~vs~ 92 (225)
T 2pju_A 27 LFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAA------------GSNGAYLKSRLS-VPVILIKPSG 92 (225)
T ss_dssp HHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------------HHHHHHHHTTCS-SCEEEECCCH
T ss_pred HHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------------ChHHHHHHhhCC-CCEEEecCCH
Confidence 3444444433445556666666555543322 2357755533 677777777777 9999887543
No 114
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=51.87 E-value=48 Score=26.18 Aligned_cols=79 Identities=11% Similarity=-0.008 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHHHH
Q 030208 50 HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAER 128 (181)
Q Consensus 50 ~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a~~ 128 (181)
....+++.+++|.++|+....+|+++|=.+.-. .....++..++..++ .++.++..+ ..+....++.-=+
T Consensus 172 Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-------t~glf~~~~~eva~eypdV~~~~~~-VD~~~mqlv~~P~- 242 (366)
T 1vlc_A 172 DRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-------SSMLWRKVVNEVAREYPDVELTHIY-VDNAAMQLILKPS- 242 (366)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-------HHHHHHHHHHHHHTTCTTSEEEEEE-HHHHHHHHHHCGG-
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-------cchHHHHHHHHHHHHCCCceEEeee-HHHHHHHHhhCcc-
Confidence 337789999999999988877888888544211 122333333333332 346655433 3444444444433
Q ss_pred hCCCEEEEec
Q 030208 129 LKPAAVVIGS 138 (181)
Q Consensus 129 ~~~dliV~g~ 138 (181)
++|.||...
T Consensus 243 -~FDVivt~N 251 (366)
T 1vlc_A 243 -QFDVILTTN 251 (366)
T ss_dssp -GCSEEEECH
T ss_pred -cceEEEEcc
Confidence 488777764
No 115
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=51.69 E-value=59 Score=22.74 Aligned_cols=96 Identities=10% Similarity=0.034 Sum_probs=53.3
Q ss_pred CCCCeEEEEEcCC---hhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec
Q 030208 39 RRGRDILIAVDHG---PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE 115 (181)
Q Consensus 39 ~~~~~Ilv~vd~s---~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 115 (181)
..++..+++-.|. ..-...++.|.++. .++.++=..+ +... ..-..++.++- .+...... -.++....+
T Consensus 19 ~~mki~i~~GsFDPiH~GHl~ii~~A~~~~----D~Viv~v~~n-p~K~-~~~s~eeR~~m-v~~a~~~~-~~v~V~~~e 90 (177)
T 3nbk_A 19 SHMTGAVCPGSFDPVTLGHVDIFERAAAQF----DEVVVAILVN-PAKT-GMFDLDERIAM-VKESTTHL-PNLRVQVGH 90 (177)
T ss_dssp -CCCEEEEEECCTTCCHHHHHHHHHHHHHS----SEEEEEECCC-TTSC-CSSCHHHHHHH-HHHHCTTC-TTEEEEECC
T ss_pred CCCEEEEEEEeeCCCCHHHHHHHHHHHHHC----CEEEEEEcCC-CCCC-CCCCHHHHHHH-HHHHhCCC-CCEEEEecC
Confidence 3457777887776 44667777777775 4665543322 2111 11112223332 23333221 123333333
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCCcccc
Q 030208 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS 146 (181)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~ 146 (181)
| -+++++++.+++.+|.|.+.-++++.
T Consensus 91 ~----l~vd~~~~~~a~~ivrGlr~~~Dfey 117 (177)
T 3nbk_A 91 G----LVVDFVRSCGMTAIVKGLRTGTDFEY 117 (177)
T ss_dssp S----CHHHHHHHTTCCEEEEEECTTCCHHH
T ss_pred c----hHHHHHHHcCCCEEEECCCchhHHHH
Confidence 3 46789999999999999888777764
No 116
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=51.58 E-value=60 Score=22.85 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=29.9
Q ss_pred EEecCChHHHHHHHHH-HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 112 RIVEGDAAKVICKEAE-RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 112 ~~~~g~~~~~I~~~a~-~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
.+..++..+++...-+ ..++|.||-. |+++..|=++.. +||+-++-+.
T Consensus 32 ~i~~~~l~~~v~~a~~~~~~~dVIISR------------Ggta~~lr~~~~-iPVV~I~~s~ 80 (196)
T 2q5c_A 32 ITKTASLTRASKIAFGLQDEVDAIISR------------GATSDYIKKSVS-IPSISIKVTR 80 (196)
T ss_dssp EEEECCHHHHHHHHHHHTTTCSEEEEE------------HHHHHHHHTTCS-SCEEEECCCH
T ss_pred EEEECCHHHHHHHHHHhcCCCeEEEEC------------ChHHHHHHHhCC-CCEEEEcCCH
Confidence 4456665544433222 4677855533 677777777777 9999887543
No 117
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=51.53 E-value=47 Score=21.58 Aligned_cols=92 Identities=10% Similarity=0.131 Sum_probs=64.0
Q ss_pred CCeEEEEEcCC-hhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChH
Q 030208 41 GRDILIAVDHG-PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (181)
Q Consensus 41 ~~~Ilv~vd~s-~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~ 119 (181)
++.|++-+.-. +.-..-++.+..=++..|.+=.++.|+.+..... .+..+.+..++.-++..+..+..-+-+
T Consensus 3 ~k~i~~lv~v~~E~l~n~fRk~fkD~R~~GskKvviNvis~~~y~e-------~v~~~REAiLDNIDlG~el~~WKp~eV 75 (126)
T 2rbg_A 3 YKNILTLISVNNDNFENYFRKIFLDVRSSGSKKTTINVFTEIQYQE-------LVTLIREALLENIDIGYELFLWKKNEV 75 (126)
T ss_dssp CCSEEEEEECCGGGHHHHHHHHHHHHHHHTCSEEEEEEECSSCHHH-------HHHHTHHHHHHTTTSEEEEEEECGGGH
T ss_pred CCceEEEEecchhhHHHHHHHHHHHHHhcCCceEEEEEecCCcHHH-------HHHHHHHHHHhccccceEEEEeCHHHH
Confidence 36677776654 5566788888888888899888999988654322 223333344555567788877777888
Q ss_pred HHHHHHHHHhCCCEEEEecc
Q 030208 120 KVICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~~ 139 (181)
+..++-+.+.+.|-+++=-.
T Consensus 76 dkm~~k~~q~~~dGl~iYCD 95 (126)
T 2rbg_A 76 DIFLKNLEKSEVDGLLVYCD 95 (126)
T ss_dssp HHHHHHHTTCCCCEEEEEEC
T ss_pred HHHHHHHHHhCCCceEEEeC
Confidence 88888888888887766443
No 118
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=51.08 E-value=56 Score=24.62 Aligned_cols=113 Identities=12% Similarity=0.004 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChH--HHHHHHHHHhCC
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA--KVICKEAERLKP 131 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~--~~I~~~a~~~~~ 131 (181)
...+++.-++.....|..=.++.-..........++..+.++...+.... .+.+-.-+-..+.. -++.+.|++.++
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~la~~a~~~Ga 98 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDK--RVPVIAGTGTNDTEKSIQASIQAKALGA 98 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT--SSCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCC--CCcEEEeCCcccHHHHHHHHHHHHHcCC
Confidence 34555555555444453222222212222233345555555554443322 34443322222333 334456888899
Q ss_pred CEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 132 AAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 132 dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
|.+++..........--+=..-+.|+..+. .||++..
T Consensus 99 davlv~~P~y~~~~~~~l~~~f~~ia~a~~-lPiilYn 135 (292)
T 3daq_A 99 DAIMLITPYYNKTNQRGLVKHFEAIADAVK-LPVVLYN 135 (292)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHHHHC-SCEEEEE
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEe
Confidence 999888754332221111122356777778 9999874
No 119
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=50.78 E-value=56 Score=22.22 Aligned_cols=23 Identities=4% Similarity=0.013 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHHhCCCEEEEecc
Q 030208 117 DAAKVICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~ 139 (181)
.+.+.+++.+++.++|+|.+...
T Consensus 56 ~p~e~lv~aa~~~~~diV~lS~~ 78 (161)
T 2yxb_A 56 QTPEQVAMAAVQEDVDVIGVSIL 78 (161)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEEee
Confidence 35556666666666666666554
No 120
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=50.52 E-value=47 Score=22.72 Aligned_cols=94 Identities=9% Similarity=0.031 Sum_probs=47.5
Q ss_pred CCCCeEEEEEcCC---hhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec
Q 030208 39 RRGRDILIAVDHG---PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE 115 (181)
Q Consensus 39 ~~~~~Ilv~vd~s---~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 115 (181)
.|++..+++-.|. ......++.|.++. .++.+. +...+.. ...-..++.++- .+...... .+......
T Consensus 3 ~mm~i~i~~GsFDPiH~GHl~li~~A~~~~----d~viv~-v~~~~~K-~~~~~~~~R~~m-~~~~~~~~--~v~V~~~~ 73 (162)
T 4f3r_A 3 AMKPIAIYPGTFDPLTNGHVDIIERALPLF----NKIIVA-CAPTSRK-DPHLKLEERVNL-IADVLTDE--RVEVLPLT 73 (162)
T ss_dssp --CCEEEEEECCTTCCHHHHHHHHHHGGGC----SEEEEE-ECCC-------CCHHHHHHH-HHHHCCCT--TEEEEECC
T ss_pred CceEEEEEEEEcCCCCHHHHHHHHHHHHHC----CcEEEE-EecCCcc-CCCCCHHHHHHH-HHHhhCCC--CEEEEecc
Confidence 3557777777766 44566677666654 455443 2222211 111112222222 22333222 23333334
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCCccc
Q 030208 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQ 145 (181)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~ 145 (181)
| ...+++++.+++.+|.|.+.-+++.
T Consensus 74 ~----l~~~~~~~~~~~~~v~G~r~~~Df~ 99 (162)
T 4f3r_A 74 G----LLVDFAKTHQANFILRGLRAVSDFD 99 (162)
T ss_dssp S----CHHHHHHHTTCCEEEEEECSHHHHH
T ss_pred c----hHHHHHHHcCCCEEEECCCchhhhh
Confidence 4 3457888899999999988766654
No 121
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=50.41 E-value=68 Score=23.13 Aligned_cols=84 Identities=11% Similarity=-0.033 Sum_probs=48.1
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec--CC-
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GD- 117 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~--g~- 117 (181)
..+|+|-++++.+...++-.+.. ...+.++.+ |+...... . .+..+..++.+...-.. .+
T Consensus 12 ~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~--Vis~~~a~--------~-----~~~A~~~gIp~~~~~~~~~~~r 74 (215)
T 3da8_A 12 PARLVVLASGTGSLLRSLLDAAV--GDYPARVVA--VGVDRECR--------A-----AEIAAEASVPVFTVRLADHPSR 74 (215)
T ss_dssp SEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEE--EEESSCCH--------H-----HHHHHHTTCCEEECCGGGSSSH
T ss_pred CcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEE--EEeCCchH--------H-----HHHHHHcCCCEEEeCcccccch
Confidence 46899999988666555544432 123445544 44433211 1 12233446766543111 11
Q ss_pred --hHHHHHHHHHHhCCCEEEEeccCC
Q 030208 118 --AAKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 118 --~~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
..+++++..++.++|++|+...++
T Consensus 75 ~~~d~~~~~~l~~~~~Dlivlagy~~ 100 (215)
T 3da8_A 75 DAWDVAITAATAAHEPDLVVSAGFMR 100 (215)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEECCS
T ss_pred hhhhHHHHHHHHhhCCCEEEEcCchh
Confidence 146788999999999999987643
No 122
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=50.29 E-value=93 Score=24.65 Aligned_cols=64 Identities=14% Similarity=-0.026 Sum_probs=40.6
Q ss_pred hhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccc--cccCchhhHHHhcCCCccEEEEcC
Q 030208 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQS--VLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 102 ~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~--~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
+...|++++.. ..+.+..+ .++.++|.||+|+..-..-.. .-.|+..-.++.+..++|++|+-+
T Consensus 233 L~~~GIpvtlI--~Dsa~~~~---M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 233 CVQEDIPCTLI--CDGAASSL---MLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HHHTTCCEEEE--CGGGHHHH---HHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHcCCCEEEE--ehhHHHHH---hhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCC
Confidence 34456887643 34444333 345679999999986322111 236888887777666699999854
No 123
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=49.81 E-value=70 Score=26.04 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=34.2
Q ss_pred ceEEEEEecCChHHHHHHH--HHHhCCCEEEEec-cCCCcccccccCchhh
Q 030208 107 VRTKARIVEGDAAKVICKE--AERLKPAAVVIGS-RGRGLIQSVLQGSVGE 154 (181)
Q Consensus 107 i~~~~~~~~g~~~~~I~~~--a~~~~~dliV~g~-~~~~~~~~~~~gs~~~ 154 (181)
.-....+..|+..+.|.+. |.++++|.|.+-. .++|.+.....|.+.+
T Consensus 151 p~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~GaT~e 201 (516)
T 1xrs_A 151 PLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGATTE 201 (516)
T ss_dssp CEEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCCSC
T ss_pred CEEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCCCCCC
Confidence 3345566789999999875 7888999886654 4577777666665543
No 124
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=49.69 E-value=53 Score=26.15 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=46.2
Q ss_pred CChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHHHH
Q 030208 50 HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAER 128 (181)
Q Consensus 50 ~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a~~ 128 (181)
....+++.+++|.++|+....+|+++|=.+.- ... ....+..++..++ .++.++..+ ..+....++.- -
T Consensus 184 Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVl---~t~----glfr~~~~eva~eYPdV~~~~~~-VD~~amqLV~~--P 253 (390)
T 3u1h_A 184 TREEIERIIRKAFELALTRKKKVTSVDKANVL---ESS----RLWREVAEEVAKEYPDVELEHML-VDNAAMQLIRN--P 253 (390)
T ss_dssp EHHHHHHHHHHHHHHHHTTTSEEEEEECTTTC---HHH----HHHHHHHHHHHTTCTTSEEEEEE-HHHHHHHHHHC--G
T ss_pred cHHHHhHHHHHHHHHHHHcCCceEEEECCccc---ccc----hHHHHHHHHHHhHCCCCeEEeee-HHHHHHHHHhC--c
Confidence 34678999999999998888898888853321 122 2333333333322 356655433 34455555543 3
Q ss_pred hCCCEEEEec
Q 030208 129 LKPAAVVIGS 138 (181)
Q Consensus 129 ~~~dliV~g~ 138 (181)
.++|.||+..
T Consensus 254 ~~FDViVt~N 263 (390)
T 3u1h_A 254 RQFDVIVTEN 263 (390)
T ss_dssp GGCSEEEECH
T ss_pred ccCcEEEecc
Confidence 3488777763
No 125
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=49.45 E-value=47 Score=21.01 Aligned_cols=54 Identities=7% Similarity=0.066 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCCC
Q 030208 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGT 173 (181)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (181)
.+..+.+..+.+...+|+|++...-..+..++ ...+.+-++.. +||+++-....
T Consensus 36 ~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~-~~ii~ls~~~~ 89 (140)
T 3h5i_A 36 LTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISE-LPVVFLTAHTE 89 (140)
T ss_dssp SSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCC-CCEEEEESSSS
T ss_pred cChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCC-CCEEEEECCCC
Confidence 34444443333336788888886532222221 22334433444 88888865444
No 126
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=49.15 E-value=84 Score=23.80 Aligned_cols=109 Identities=8% Similarity=-0.093 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecC--CchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecC--ChHHH--HHHHHH
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSS--VQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--DAAKV--ICKEAE 127 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g--~~~~~--I~~~a~ 127 (181)
...+++.-++.....|.. -+.+.-. .......++..+.++...+.... .+.+- .-.| +..+. +.+.|+
T Consensus 35 D~~~l~~lv~~li~~Gv~--gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g--rvpvi--aGvg~~st~~ai~la~~A~ 108 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLD--SLVLAGTTGESPTTTAAEKLELLKAVREEVGD--RAKLI--AGVGTNNTRTSVELAEAAA 108 (304)
T ss_dssp CHHHHHHHHHHHHHTTCC--EEEESSTTTTTTTSCHHHHHHHHHHHHHHHTT--TSEEE--EECCCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC--EEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEE--ecCCCCCHHHHHHHHHHHH
Confidence 445555555554444532 2333322 22233445555555554443322 24433 2233 34333 456678
Q ss_pred HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 128 RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 128 ~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+.++|.+++..........--+=..-+.|+..++ .||++..
T Consensus 109 ~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~-lPiilYn 149 (304)
T 3cpr_A 109 SAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATE-VPICLYD 149 (304)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC-SCEEEEE
T ss_pred hcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 8899999888754322221111122256788888 9999874
No 127
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=48.94 E-value=23 Score=22.67 Aligned_cols=36 Identities=8% Similarity=0.125 Sum_probs=25.0
Q ss_pred CCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 130 ~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
++|+|++|.+-+..+..+ ++...... +||.+++..+
T Consensus 53 ~~DvvLLgPQV~y~~~~i------k~~~~~~~-ipV~vI~~~~ 88 (108)
T 3nbm_A 53 VYDLIILAPQVRSYYREM------KVDAERLG-IQIVATRGME 88 (108)
T ss_dssp GCSEEEECGGGGGGHHHH------HHHHTTTT-CEEEECCHHH
T ss_pred CCCEEEEChHHHHHHHHH------HHHhhhcC-CcEEEeCHHH
Confidence 499999998755444332 55666667 9999987543
No 128
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=48.31 E-value=20 Score=25.90 Aligned_cols=36 Identities=8% Similarity=0.028 Sum_probs=26.6
Q ss_pred CCeEEEEEcCChhhHH-HHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKH-AFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~-a~~~a~~la~~~~a~l~llhV 77 (181)
.++|++++.++-.+.+ +++.+..+.+ .|.+++++-.
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~T 41 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVVS 41 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEEe
Confidence 3899999999976665 7777766554 4788777654
No 129
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=48.17 E-value=47 Score=26.29 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=46.0
Q ss_pred ChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHHHHh
Q 030208 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAERL 129 (181)
Q Consensus 51 s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a~~~ 129 (181)
...+++.+++|.++|+....+|+++|=.+-- . .. ...++..++..++ .++.++..+ ..+....++.-= .
T Consensus 178 r~~~eRIar~AFe~A~~rrkkVT~v~KaNvl--~-~~----glf~~~~~eva~eypdV~~~~~~-VD~~am~lv~~P--~ 247 (375)
T 3vmk_A 178 RKEIRRIAKIAFESAQGRRKKVTSVDKANVL--A-CS----VLWREVVEEVAKDYPDVELEHIY-IDNATMQLLRRP--N 247 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTC--H-HH----HHHHHHHHHHHTTCTTSEEEEEE-HHHHHHHHHHCG--G
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECchhh--h-hh----hHHHHHHHHHHHHCCCceEeeee-HHHHHHHHHhCc--c
Confidence 3678999999999998888898888853321 1 11 2333333333332 356655433 344555554433 3
Q ss_pred CCCEEEEec
Q 030208 130 KPAAVVIGS 138 (181)
Q Consensus 130 ~~dliV~g~ 138 (181)
++|.||+..
T Consensus 248 ~FDViVt~N 256 (375)
T 3vmk_A 248 EFDVMLCSN 256 (375)
T ss_dssp GCSEEEECH
T ss_pred cCcEEEECc
Confidence 488777764
No 130
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=48.03 E-value=78 Score=23.12 Aligned_cols=34 Identities=6% Similarity=0.076 Sum_probs=27.2
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
.+|+|++++...|..++..+.+.. ..+.++|+..
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idt 79 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDT 79 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecC
Confidence 589999999999988888877664 3577888754
No 131
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=48.03 E-value=75 Score=22.91 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=47.4
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec--CC--
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GD-- 117 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~--g~-- 117 (181)
.+|.|-++++.+...++-.+++-- .+.++ +-|+........ + +..+..++.+...-.. .+
T Consensus 6 ~riavl~SG~Gsnl~all~~~~~~--~~~eI--~~Vis~~~~a~~-------~-----~~A~~~gIp~~~~~~~~~~~r~ 69 (215)
T 3tqr_A 6 LPIVVLISGNGTNLQAIIGAIQKG--LAIEI--RAVISNRADAYG-------L-----KRAQQADIPTHIIPHEEFPSRT 69 (215)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHTT--CSEEE--EEEEESCTTCHH-------H-----HHHHHTTCCEEECCGGGSSSHH
T ss_pred cEEEEEEeCCcHHHHHHHHHHHcC--CCCEE--EEEEeCCcchHH-------H-----HHHHHcCCCEEEeCccccCchh
Confidence 578888888866666555554322 34444 444443221111 1 2223445766532111 11
Q ss_pred -hHHHHHHHHHHhCCCEEEEeccC
Q 030208 118 -AAKVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~g~~~ 140 (181)
..+++++..++.++|++|+...+
T Consensus 70 ~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 70 DFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp HHHHHHHHHHHTTCCSEEEESSCC
T ss_pred HhHHHHHHHHHhcCCCEEEEccch
Confidence 24678999999999999998764
No 132
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=47.85 E-value=49 Score=25.76 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=45.5
Q ss_pred cCChhhHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHH
Q 030208 49 DHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAE 127 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~ 127 (181)
-....+++.+++|.++|+.. ..+++++|=.+.- ........+..++..+ +-.++.++..+ ..+....++.-=+
T Consensus 141 ~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvl--k~t~glf~~~~~eva~---eyp~I~~~~~~-vD~~~m~lv~~P~ 214 (333)
T 1x0l_A 141 ISKKASERIGRAALRIAEGRPRKTLHIAHKANVL--PLTQGLFLDTVKEVAK---DFPLVNVQDII-VDNCAMQLVMRPE 214 (333)
T ss_dssp EEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTC--TTHHHHHHHHHHHHHT---TCTTSEEEEEE-HHHHHHHHHHCGG
T ss_pred ecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccc--hhhhHHHHHHHHHHHH---HCCCceEEEEE-HHHHHHHHhhCcc
Confidence 34477999999999999987 4688888854321 1122223333333221 22345555433 3444444444333
Q ss_pred HhCCCEEEEec
Q 030208 128 RLKPAAVVIGS 138 (181)
Q Consensus 128 ~~~~dliV~g~ 138 (181)
++|.||...
T Consensus 215 --~FDVivt~N 223 (333)
T 1x0l_A 215 --RFDVIVTTN 223 (333)
T ss_dssp --GCSEEEECH
T ss_pred --cceEEEEcC
Confidence 488777653
No 133
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=47.46 E-value=17 Score=28.06 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=38.2
Q ss_pred EEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEE
Q 030208 111 ARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (181)
Q Consensus 111 ~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (181)
+.+.+-....++++.|++.++.+|+-.+.+........+......++.+.. +||.+-
T Consensus 32 fNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~-VPVaLH 88 (306)
T 3pm6_A 32 ICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAAS-VPITLH 88 (306)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCS-SCEEEE
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCC-CCEEEE
Confidence 344444789999999999999999887654322211122244556778888 999764
No 134
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=47.29 E-value=75 Score=22.67 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=27.9
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecC
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~ 80 (181)
++++|++++...|..++..+.+. +.+++.+|+...
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 68999999999998888777654 357888998654
No 135
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=46.90 E-value=94 Score=23.71 Aligned_cols=126 Identities=10% Similarity=-0.075 Sum_probs=63.2
Q ss_pred CCeEEEEE----c-CChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec
Q 030208 41 GRDILIAV----D-HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE 115 (181)
Q Consensus 41 ~~~Ilv~v----d-~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 115 (181)
++-|.+++ + ...-...+++.-++.....|..=.++.-..........++..+.++...+.... .+.+-.-+-.
T Consensus 25 ~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g--rvpViaGvg~ 102 (315)
T 3na8_A 25 IHGIIGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAH--RVPTIVSVSD 102 (315)
T ss_dssp CCEEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT--SSCBEEECCC
T ss_pred cCceEEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEEEecCC
Confidence 46666653 2 122344555555555544454322222212222233345555555554443322 2444332211
Q ss_pred CChH--HHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 116 GDAA--KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 116 g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
.+.. -++.+.|++.++|.+++..........--+=..-+.|+..++ .||++..
T Consensus 103 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilYn 157 (315)
T 3na8_A 103 LTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIG-VPVMLYN 157 (315)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCS-SCEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 1333 334456788899999998764333221111123367888888 9999874
No 136
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=46.77 E-value=15 Score=27.92 Aligned_cols=57 Identities=9% Similarity=0.097 Sum_probs=41.8
Q ss_pred EEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccc-cccCchhhHHHhcCCCccEEEE
Q 030208 111 ARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVV 168 (181)
Q Consensus 111 ~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv 168 (181)
+.+.+-....++++.|++.++.+|+-.+.+.....+ -.+......++.+.. +||.+-
T Consensus 23 fNv~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~-VPValH 80 (286)
T 1gvf_A 23 FNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN-MPLALH 80 (286)
T ss_dssp EECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTT-SCBEEE
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCC-CcEEEE
Confidence 344444889999999999999999988775422222 234577778888899 998875
No 137
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=46.77 E-value=35 Score=26.98 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=40.4
Q ss_pred hhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCC---CcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR---GLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 102 ~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~---~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
+.+.|++++. ...+.+..+ .++.++|.+++|+..- ++.- .-.|+..-.++.+..++|++|+-+
T Consensus 229 L~~~GIpvtl--I~Dsa~~~~---M~~~~Vd~ViVGAD~V~aNG~v~-NKiGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 229 LMQGGIDVTL--ITDSMAAHT---MKEKQISAVIVGADRIAKNGDTA-NKIGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HHTTTCEEEE--ECGGGHHHH---HHHTTCCEEEECCSEEETTCCEE-EETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHcCCCEEE--EehhHHHHH---hhhcCCCEEEECccEEecCCCEE-ecccHHHHHHHHHHcCCCEEEecc
Confidence 3445677764 334444333 3456799999999863 2222 236888777777666699999844
No 138
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=46.38 E-value=79 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCEEEEeccC
Q 030208 119 AKVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~ 140 (181)
.+++++..++.++|++|+...+
T Consensus 69 ~~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 69 EERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHHHHTTCCEEEESSCC
T ss_pred hHHHHHHHHhcCCCEEEEeCch
Confidence 3678888999999999998764
No 139
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=46.15 E-value=85 Score=23.01 Aligned_cols=122 Identities=10% Similarity=0.079 Sum_probs=64.0
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCce-EEEEEec----
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVR-TKARIVE---- 115 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-~~~~~~~---- 115 (181)
.+..+++.+...-...++...+.....+ .+++++++-+..-.....+.-...++ +..++.-++. ..++...
T Consensus 39 ~~~~l~LsgGstP~~~y~~L~~~~~~idw~~v~~f~~DEr~vp~~~~~Sn~~~~~---~~ll~~v~i~~~~i~~~~~~~~ 115 (248)
T 3oc6_A 39 GQATIVLTGGGTGIGLLKRVRERSGEIDWSKVHIYWGDERFVPQDDDERNDKQAR---EALLDHIGIPPVNVHAMAASDG 115 (248)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTGGGSCGGGEEEEESEEECSCTTCTTCHHHHHH---HHTGGGSCCCGGGBCCCCCTTS
T ss_pred CCEEEEECCCccHHHHHHHHHhhccCCCcceEEEEEeeeccCCCCChHHHHHHHH---HHhhccCCCChhhEEecCCccc
Confidence 4567788777666677776665432233 57888888653211111111111221 2233332221 1112222
Q ss_pred ---CChHHHHHHHHHH---------hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 116 ---GDAAKVICKEAER---------LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 116 ---g~~~~~I~~~a~~---------~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
.++.++..+|.+. .++|++++|--..+.....+-|+- .+..+. ..|..+..
T Consensus 116 ~~~~~~~~~a~~Ye~~i~~~~~~~~~~~Dl~lLG~G~dGH~aslfPg~~---~~~~~~-~~vv~~~~ 178 (248)
T 3oc6_A 116 EFGDDLEAAAAGYAQLLSANFDSSVPGFDVHLLGMGGEGHVNSLFPDTD---AVRETE-RLVVGVSD 178 (248)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHTSSSCSEEEEEECCCTTCCBTTBCTTCH---HHHCSS-CSEEEESC
T ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCCCEEEcCCCCh---hhccCc-ceEEEecC
Confidence 2556666665433 257999999877777776676763 445555 66666643
No 140
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=46.04 E-value=91 Score=23.32 Aligned_cols=47 Identities=13% Similarity=-0.076 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCEEEEeccCCCc-ccccccCchhhHHHhcCCCccEEEEc
Q 030208 122 ICKEAERLKPAAVVIGSRGRGL-IQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 122 I~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+.+.|++.++|.+++....... ...--+=..-+.|+..++ .||++..
T Consensus 82 la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~-lPiilYn 129 (286)
T 2r91_A 82 LAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVS-IPVFLYN 129 (286)
T ss_dssp HHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCS-SCEEEEE
T ss_pred HHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 4556788899999998764433 221111122256788888 9999874
No 141
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=45.93 E-value=60 Score=22.52 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=25.6
Q ss_pred CeEEEEEcC---ChhhHHHHHHHHHH-hccCCCEEEEEEEecC
Q 030208 42 RDILIAVDH---GPNSKHAFDWALIH-LCRLADTIHLVHAVSS 80 (181)
Q Consensus 42 ~~Ilv~vd~---s~~s~~a~~~a~~l-a~~~~a~l~llhV~~~ 80 (181)
.+|++-... ...+..+++++.+. +...|.++.++.+.+.
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~ 45 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDL 45 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGS
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 355554433 24577888888776 6666788888887553
No 142
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=45.85 E-value=68 Score=25.24 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=46.8
Q ss_pred cCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHHH
Q 030208 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAE 127 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a~ 127 (181)
-....+++.+++|.++|+....+|+++|=.+.-. . ....++..++..++ .++.++..+ ..+....++.-=+
T Consensus 167 ~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk---~----~~lf~~~~~eva~eypdI~~~~~~-vD~~~m~lv~~P~ 238 (363)
T 1cnz_A 167 YHRFEIERIARIAFESARKRRRKVTSIDKANVLQ---S----SILWREIVNDVAKTYPDVELAHMY-IDNATMQLIKDPS 238 (363)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH---H----HHHHHHHHHHHHTTCTTSEEEEEE-HHHHHHHHHHCGG
T ss_pred EcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc---c----chhHHHHHHHHHHHCCCceEeeee-HHHHHHHHhhCcc
Confidence 3447789999999999988877888888544221 1 22333334443333 345555332 3444444444433
Q ss_pred HhCCCEEEEec
Q 030208 128 RLKPAAVVIGS 138 (181)
Q Consensus 128 ~~~~dliV~g~ 138 (181)
++|.||...
T Consensus 239 --~FDVivt~N 247 (363)
T 1cnz_A 239 --QFDVLLCSN 247 (363)
T ss_dssp --GCSEEEECH
T ss_pred --cceEEEECC
Confidence 488777653
No 143
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=45.75 E-value=39 Score=27.51 Aligned_cols=81 Identities=10% Similarity=-0.023 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhccCCCEEEEEEEecCCch------hhHHHHHHHHHHHHHHHHhhhcCceEEEEEe--cCChHHHHHHHH
Q 030208 55 KHAFDWALIHLCRLADTIHLVHAVSSVQN------QIVYDMSQGLMEKLAIEAMDVAMVRTKARIV--EGDAAKVICKEA 126 (181)
Q Consensus 55 ~~a~~~a~~la~~~~a~l~llhV~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~--~g~~~~~I~~~a 126 (181)
-.|+..|++. ..+ .|..|+|.++... ..-..-..+.++++. +.+...|+...+... .|++.+.|.+++
T Consensus 16 N~aL~~A~~~--~~~-~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~-~~L~~~G~~L~v~~~~~~g~~~~~l~~l~ 91 (471)
T 1dnp_A 16 NLALAAACRN--SSA-RVLALYIATPRQWATHNMSPRQAELINAQLNGLQ-IALAEKGIPLLFREVDDFVASVEIVKQVC 91 (471)
T ss_dssp CHHHHHHSSS--TTS-EEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHH-HHHHHTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred hHHHHHHHhC--CCC-CEEEEEEECchhhccCCCCHHHHHHHHHHHHHHH-HHHHHCCCeEEEEEccCCCCHHHHHHHHH
Confidence 3566666542 123 8999999875321 011122334445433 333344555543222 689999999999
Q ss_pred HHhCCCEEEEecc
Q 030208 127 ERLKPAAVVIGSR 139 (181)
Q Consensus 127 ~~~~~dliV~g~~ 139 (181)
++.+++.|+.-..
T Consensus 92 ~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 92 AENSVTHLFYNYQ 104 (471)
T ss_dssp HHHTCCEEEEECC
T ss_pred HHcCCCEEEEecc
Confidence 9999999988543
No 144
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=45.42 E-value=95 Score=23.35 Aligned_cols=111 Identities=7% Similarity=-0.073 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHH--HHHHHHHHh
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAERL 129 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~--~I~~~a~~~ 129 (181)
...+++.-++.....|.. -+.+.-.. ......++..+.++...+.... .+.+-.-+-..+..+ ++.+.|++.
T Consensus 22 D~~~l~~lv~~li~~Gv~--gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g--r~pviaGvg~~~t~~ai~la~~A~~~ 97 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCD--SVTLFGTTGEGCSVGSRERQAILSSFIAAGIA--PSRIVTGVLVDSIEDAADQSAEALNA 97 (294)
T ss_dssp CHHHHHHHHHHHHHTTCS--EEEESSTTTTGGGSCHHHHHHHHHHHHHTTCC--GGGEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCC--EEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEEEeCCCccHHHHHHHHHHHHhc
Confidence 344454444544444532 23333322 2233345555555554433221 244433222223433 346667888
Q ss_pred CCCEEEEeccCCCc-ccccccCchhhHHHhcC---CCccEEEEc
Q 030208 130 KPAAVVIGSRGRGL-IQSVLQGSVGEYCLHHC---KTAPIIVVP 169 (181)
Q Consensus 130 ~~dliV~g~~~~~~-~~~~~~gs~~~~ll~~~---~~~pVlvv~ 169 (181)
++|.+++....... ...--+=..-+.|+..+ + .||++..
T Consensus 98 Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~-lPiilYn 140 (294)
T 3b4u_A 98 GARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDA-RDILVYN 140 (294)
T ss_dssp TCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTC-CCEEEEE
T ss_pred CCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCC-CcEEEEE
Confidence 99999988764333 21111112225677777 7 9999874
No 145
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=45.27 E-value=70 Score=21.75 Aligned_cols=92 Identities=9% Similarity=-0.014 Sum_probs=47.5
Q ss_pred CCeEEEEEcCC---hhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhh-hcCceEEEEEecC
Q 030208 41 GRDILIAVDHG---PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMD-VAMVRTKARIVEG 116 (181)
Q Consensus 41 ~~~Ilv~vd~s---~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~i~~~~~~~~g 116 (181)
++..+++-.|. ......++.|.++. .++.+. +...+... ..-..++.++- .+..++ ... ++.....|
T Consensus 2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~----D~viv~-v~~~~~K~-~~~~~~eR~~m-l~~a~~~~~~--v~v~~~~~ 72 (157)
T 3nv7_A 2 QKVGIYPGTFDPVTNGHIDIIHRSSELF----EKLIVA-VAHSSAKN-PMFSLDERLKM-IQLATKSFKN--VECVAFEG 72 (157)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS----SEEEEE-EECCGGGC-CSSCHHHHHHH-HHHHHTTSTT--EEEEEECS
T ss_pred CEEEEEEEEcCCCCHHHHHHHHHHHHhC----CceEEE-EccCCCCC-CCCCHHHHHHH-HHHHhcCCCc--EEEEecCc
Confidence 45667776666 44567777776664 456543 33322111 11112222222 222222 222 33223333
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCCccc
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGRGLIQ 145 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~ 145 (181)
...+++++.++|.+|.|.+.-++++
T Consensus 73 ----l~~~~~~~~~~~~ivrG~r~~~D~~ 97 (157)
T 3nv7_A 73 ----LLAYLAKEYHCKVLVRGLRVVSDFE 97 (157)
T ss_dssp ----CHHHHHHHTTCCCBCCCCSCCCCHH
T ss_pred ----hHHHHHHHcCCCEEEECCcccchhh
Confidence 3568999999999999977665554
No 146
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=45.09 E-value=99 Score=23.47 Aligned_cols=84 Identities=11% Similarity=-0.112 Sum_probs=50.0
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHh---hhcCceEEEEEecCC
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAM---DVAMVRTKARIVEGD 117 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~~~~~~~g~ 117 (181)
..++++.+++ -.|.-++-.+ ...|.+++.+|... + .. ..+..+++++... ...+++..+ .. +
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll----~~~G~~v~~v~~~~-~--~~----~~~~a~~~a~~l~~~~~~~~i~~~v--v~-~ 243 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLM----MKRGVEVIPVYIGK-D--DK----NLEKVRSLWNLLKRYSYGSKGFLVV--AE-S 243 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHH----HHBTCEEEEEEESC-S--SH----HHHHHHHHHHHHHTTCTTSCCCCEE--ES-S
T ss_pred CCcEEEEEeC-CcHHHHHHHH----HhCCCeEEEEEEEE-C--HH----HHHHHHHHHHHHhhhccCCCCcEEE--eC-C
Confidence 3689999999 8886554443 34588999999962 1 11 1222233232221 112344432 22 0
Q ss_pred hHHHHHHHHHHhCCCEEEEeccC
Q 030208 118 AAKVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~ 140 (181)
...+.++|++.++|.|+.|.+.
T Consensus 244 -~~~~~~~A~~~ga~~I~tG~~~ 265 (307)
T 1vbk_A 244 -FDRVLKLIRDFGVKGVIKGLRP 265 (307)
T ss_dssp -HHHHHHHHHHHTCCEEECCCCG
T ss_pred -CHHHHHHHHHcCCCEEEECccc
Confidence 2334499999999999999864
No 147
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=45.08 E-value=65 Score=21.62 Aligned_cols=35 Identities=9% Similarity=-0.067 Sum_probs=15.2
Q ss_pred eEEEEEcC-ChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 43 DILIAVDH-GPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 43 ~Ilv~vd~-s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
+|++.... .-+.+.+++...+-+...|..+.++.+
T Consensus 6 kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~ 41 (159)
T 3fni_A 6 SIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDL 41 (159)
T ss_dssp EEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 44444322 234444444444444444444444444
No 148
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=44.96 E-value=80 Score=24.78 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHHHH
Q 030208 50 HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAER 128 (181)
Q Consensus 50 ~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a~~ 128 (181)
....+++.+++|.++|+....+|+++|=.+.-. .....++..++..++ .++.++.. ...+....++.-=+
T Consensus 163 T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-------~~~lf~~~~~eva~eypdI~~~~~-~vD~~~mqlv~~P~- 233 (358)
T 1a05_A 163 DEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE-------TTRLWREVVTEVARDYPDVRLSHM-YVDNAAMQLIRAPA- 233 (358)
T ss_dssp EHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-------HHHHHHHHHHHHGGGCTTSEEEEE-EHHHHHHHHHHCGG-
T ss_pred cHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-------cchhHHHHHHHHHHHCCCceEEee-eHHHHHHHHHhCCC-
Confidence 347789999999999988877888888544221 122444444444433 34555533 23444444444333
Q ss_pred hCCCEEEEec
Q 030208 129 LKPAAVVIGS 138 (181)
Q Consensus 129 ~~~dliV~g~ 138 (181)
++|.||...
T Consensus 234 -~FDVivt~N 242 (358)
T 1a05_A 234 -QFDVLLTGN 242 (358)
T ss_dssp -GCSEEEECH
T ss_pred -cccEEEecC
Confidence 488777754
No 149
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=44.82 E-value=1e+02 Score=23.40 Aligned_cols=111 Identities=9% Similarity=-0.064 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChH--HHHHHHHHHh
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA--KVICKEAERL 129 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~--~~I~~~a~~~ 129 (181)
...+++..++.....|.. -+.+.-.. ......++..+.++...+.... .+.+-.-+-..+.. -++.+.|++.
T Consensus 34 D~~~l~~lv~~li~~Gv~--gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~la~~a~~~ 109 (304)
T 3l21_A 34 DTATAARLANHLVDQGCD--GLVVSGTTGESPTTTDGEKIELLRAVLEAVGD--RARVIAGAGTYDTAHSIRLAKACAAE 109 (304)
T ss_dssp CHHHHHHHHHHHHHTTCS--EEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--TSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC--EEEeCccccchhhCCHHHHHHHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 445555555555444532 23333222 2233345555555554443322 24443322112333 3445568888
Q ss_pred CCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 130 ~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
++|.+++..........--+=..-+.|+..+. .||++..
T Consensus 110 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilYn 148 (304)
T 3l21_A 110 GAHGLLVVTPYYSKPPQRGLQAHFTAVADATE-LPMLLYD 148 (304)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHTSCS-SCEEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 99999998754333221111122367888888 9999874
No 150
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=44.80 E-value=85 Score=22.58 Aligned_cols=86 Identities=12% Similarity=0.017 Sum_probs=49.1
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec--CCh
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GDA 118 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~--g~~ 118 (181)
+++|.|-++++-+...++-.+.+- ...+++|.+|-..... . ...+..+..++.+...... .+.
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-~~l~~eI~~Visn~~~--a------------~v~~~A~~~gIp~~~~~~~~~~~r 66 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-GQLPCEVALLITDKPG--A------------KVVERVKVHEIPVCALDPKTYPSK 66 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-TCCSSEEEEEEESCSS--S------------HHHHHHHTTTCCEEECCGGGSSSH
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-CCCCcEEEEEEECCCC--c------------HHHHHHHHcCCCEEEeChhhcCch
Confidence 367888888886666665555432 2235566554442211 1 1222334446776432211 111
Q ss_pred ---HHHHHHHHHHhCCCEEEEeccCC
Q 030208 119 ---AKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 119 ---~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
.+++++..++.++|++|+...++
T Consensus 67 ~~~d~~~~~~l~~~~~Dliv~agy~~ 92 (211)
T 3p9x_A 67 EAYEIEVVQQLKEKQIDFVVLAGYMR 92 (211)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred hhhHHHHHHHHHhcCCCEEEEeCchh
Confidence 46889999999999999987643
No 151
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=44.60 E-value=79 Score=22.19 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=48.7
Q ss_pred CCCCeEEEEEcCC---hhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEe
Q 030208 39 RRGRDILIAVDHG---PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIV 114 (181)
Q Consensus 39 ~~~~~Ilv~vd~s---~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~ 114 (181)
.|++..+++-.|. ..-...++.|.+++. ++.+. |...+.... .-..++.++- .+..+.. .. +.....
T Consensus 20 ~~mki~v~~GsFDpiH~GHl~li~~A~~~~d----~viv~-v~~~p~K~~-l~s~eeR~~m-l~~~~~~v~~--v~v~~f 90 (187)
T 3k9w_A 20 GSMVVAVYPGTFDPLTRGHEDLVRRASSIFD----TLVVG-VADSRAKKP-FFSLEERLKI-ANEVLGHYPN--VKVMGF 90 (187)
T ss_dssp CCCCEEEEEECCTTCCHHHHHHHHHHHHHSS----EEEEE-EECCGGGCC-SSCHHHHHHH-HHHHHTTCTT--EEEEEE
T ss_pred CCcEEEEEEEeCCcCcHHHHHHHHHHHHHCC----cEEEE-EecCCccCC-CCCHHHHHHH-HHHHhccCCc--EEEEec
Confidence 4567777776665 557788888888863 33322 322211111 1112222222 2222222 22 222222
Q ss_pred cCChHHHHHHHHHHhCCCEEEEeccCCCccc
Q 030208 115 EGDAAKVICKEAERLKPAAVVIGSRGRGLIQ 145 (181)
Q Consensus 115 ~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~ 145 (181)
.+ .+.+++++.+++.+|+|.+.-..+.
T Consensus 91 ~~----~~~d~l~~l~~~~iv~G~r~~~Df~ 117 (187)
T 3k9w_A 91 TG----LLKDFVRANDARVIVRGLRAVSDFE 117 (187)
T ss_dssp SS----CHHHHHHHTTCSEEEEECCTTSCHH
T ss_pred hh----hHHHHHHHcCCCEEEECCCcccccc
Confidence 33 2346788899999999987766654
No 152
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=44.51 E-value=25 Score=26.81 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=40.6
Q ss_pred EEEecCChHHHHHHHHHHhCCCEEEEeccCCCcc-cc-cccCchhhHHHh--cCCCccEEEE
Q 030208 111 ARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLI-QS-VLQGSVGEYCLH--HCKTAPIIVV 168 (181)
Q Consensus 111 ~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~-~~-~~~gs~~~~ll~--~~~~~pVlvv 168 (181)
+.+.+-....++++.|++.++.+|+-.+.+.... .+ -++......++. +.. +||.+-
T Consensus 26 fNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~-VPValH 86 (288)
T 3q94_A 26 FNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNIT-VPVAIH 86 (288)
T ss_dssp EECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCC-SCEEEE
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCC-CcEEEE
Confidence 3444447899999999999999999877653222 12 234566677888 888 999875
No 153
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=44.39 E-value=88 Score=23.84 Aligned_cols=110 Identities=8% Similarity=-0.054 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecC--CchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHH--HHHHHHHHh
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSS--VQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAERL 129 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~--~I~~~a~~~ 129 (181)
...+++.-++.....|. .-+.+.-. .......++..+.++...+.... .+.+-.-+- .+..+ ++.+.|++.
T Consensus 31 D~~~l~~lv~~li~~Gv--~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~g--rvpViaGvg-~~t~~ai~la~~A~~~ 105 (316)
T 3e96_A 31 DWHHYKETVDRIVDNGI--DVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHG--RALVVAGIG-YATSTAIELGNAAKAA 105 (316)
T ss_dssp CHHHHHHHHHHHHTTTC--CEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT--SSEEEEEEC-SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC--CEEEeCccccCcccCCHHHHHHHHHHHHHHhCC--CCcEEEEeC-cCHHHHHHHHHHHHhc
Confidence 34555555555444443 23333222 12233345555555554443322 345443332 24433 344568888
Q ss_pred CCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 130 ~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
++|.+++...-......--+=..-+.|+..++ .||++..
T Consensus 106 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilYn 144 (316)
T 3e96_A 106 GADAVMIHMPIHPYVTAGGVYAYFRDIIEALD-FPSLVYF 144 (316)
T ss_dssp TCSEEEECCCCCSCCCHHHHHHHHHHHHHHHT-SCEEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEe
Confidence 99999997643322211111122257778888 9999985
No 154
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=43.67 E-value=61 Score=24.52 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCceEEEEEecCCh--HHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCc
Q 030208 86 VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTA 163 (181)
Q Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~ 163 (181)
..++..+.++...+.... .+.+-.-+-.-+. .-++.+.|++.++|.+++..........--+=..-+.|+..++ .
T Consensus 55 s~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~-l 131 (300)
T 3eb2_A 55 GTAQREAVVRATIEAAQR--RVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVE-I 131 (300)
T ss_dssp CHHHHHHHHHHHHHHHTT--SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCS-S
T ss_pred CHHHHHHHHHHHHHHhCC--CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCC-C
Confidence 345555555554444322 3454433322233 3344567888899999998764433221111123367888899 9
Q ss_pred cEEEEcCC
Q 030208 164 PIIVVPGK 171 (181)
Q Consensus 164 pVlvv~~~ 171 (181)
||++.--+
T Consensus 132 PiilYn~P 139 (300)
T 3eb2_A 132 PVVIYTNP 139 (300)
T ss_dssp CEEEEECT
T ss_pred CEEEEECc
Confidence 99998543
No 155
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=43.36 E-value=65 Score=25.35 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHHHHhC
Q 030208 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAERLK 130 (181)
Q Consensus 52 ~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a~~~~ 130 (181)
..+++.+++|.++|+....+|+++|=.+.- . ......+..++..++ .++.++..+ ..+....++.- -.+
T Consensus 167 ~~~eRIar~AFe~A~~rrkkVT~v~KaNvl---~----t~glf~~~~~eva~eypdV~~~~~~-VD~~am~lv~~--P~~ 236 (361)
T 3udu_A 167 KEIERIARIAFESARIRKKKVHLIDKANVL---A----SSILWREVVANVAKDYQDINLEYMY-VDNAAMQIVKN--PSI 236 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEECTTTC---H----HHHHHHHHHHHHGGGCTTSEEEEEE-HHHHHHHHHHC--GGG
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECchhh---c----cchHHHHHHHHHHHHCCCCeEEeee-HHHHHHHHHhC--ccc
Confidence 678999999999998888899888853321 1 122333334443333 356655433 34445444443 334
Q ss_pred CCEEEEec
Q 030208 131 PAAVVIGS 138 (181)
Q Consensus 131 ~dliV~g~ 138 (181)
+|.||+..
T Consensus 237 FDViVt~N 244 (361)
T 3udu_A 237 FDVMLCSN 244 (361)
T ss_dssp CSEEEECH
T ss_pred CcEEEecc
Confidence 88777764
No 156
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=43.30 E-value=73 Score=22.77 Aligned_cols=76 Identities=8% Similarity=-0.103 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCCch-----hhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHH
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSVQN-----QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAER 128 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~ 128 (181)
+...++.++++|+..|++..++|.-..... ....+...+.++++.+ ..+..++.+-++...+...+.+.++++.
T Consensus 74 ~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~-~a~~~gv~l~lEn~~~~~~~~~~~l~~~ 152 (254)
T 3ayv_A 74 TLRRLLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVR-RARTLGVRLLLENSHEPHPEALRPVLEA 152 (254)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHH-HHHHHTCEEEEECSSCSSGGGTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHH-HHhhcCCEEEEcCCCCCCHHHHHHHHHh
Confidence 356788889999999999888886433221 1112333444444332 3334467666555544444566666666
Q ss_pred hC
Q 030208 129 LK 130 (181)
Q Consensus 129 ~~ 130 (181)
.+
T Consensus 153 v~ 154 (254)
T 3ayv_A 153 HA 154 (254)
T ss_dssp HT
T ss_pred cC
Confidence 44
No 157
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=43.01 E-value=81 Score=24.78 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHHHHhC
Q 030208 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAERLK 130 (181)
Q Consensus 52 ~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a~~~~ 130 (181)
..+++.+++|.++|+....+|+++|=.+.-. . ....++..++..++ .++.++..+ ..+....++.-= .+
T Consensus 163 ~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk---~----~~lf~~~~~eva~eypdI~~~~~~-VD~~~mqlv~~P--~~ 232 (359)
T 2y3z_A 163 PEVERVARVAFEAARKRRKHVVSVDKANVLE---V----GEFWRKTVEEVGRGYPDVALEHQY-VDAMAMHLVRSP--AR 232 (359)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTCH---H----HHHHHHHHHHHHTTCTTSEEEEEE-HHHHHHHHHHCG--GG
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCcccc---c----cHHHHHHHHHHHHHCCcEEEEeeE-HHHHHHHHhhCc--cc
Confidence 6788999999999988877888888544221 1 22333334443333 346655432 344444444433 34
Q ss_pred CCEEEEec
Q 030208 131 PAAVVIGS 138 (181)
Q Consensus 131 ~dliV~g~ 138 (181)
+|.||...
T Consensus 233 FDVivt~N 240 (359)
T 2y3z_A 233 FDVVVTGN 240 (359)
T ss_dssp CSEEEECH
T ss_pred ccEEEEcC
Confidence 88877764
No 158
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=42.61 E-value=75 Score=25.64 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=40.5
Q ss_pred HhhhcCceEEEEEecC-ChHHHHHHHH---HHhCC-CEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 101 AMDVAMVRTKARIVEG-DAAKVICKEA---ERLKP-AAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 101 ~~~~~~i~~~~~~~~g-~~~~~I~~~a---~~~~~-dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
.++.-++.++..+..- ...+.+.+++ +..+. +.||.++-....+.+ -+...+. +||+-||..
T Consensus 287 ~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpg--------vva~~t~-~PVIgvP~~ 353 (425)
T 2h31_A 287 ACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGP--------VMSGNTA-YPVISCPPL 353 (425)
T ss_dssp HHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHH--------HHHHHCS-SCEEECCCC
T ss_pred HHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHh--------HHhccCC-CCEEEeeCc
Confidence 3345567788777653 4455555554 45667 688888765555443 3666788 999999974
No 159
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=42.37 E-value=14 Score=26.31 Aligned_cols=64 Identities=9% Similarity=-0.030 Sum_probs=39.5
Q ss_pred hhcCceEEEEEecCChHHHHHHHHHHhC--CCEEEEeccCCCcccc--cccCchhhHHHhcCCCccEEEEcCC
Q 030208 103 DVAMVRTKARIVEGDAAKVICKEAERLK--PAAVVIGSRGRGLIQS--VLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 103 ~~~~i~~~~~~~~g~~~~~I~~~a~~~~--~dliV~g~~~~~~~~~--~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
...+++++. ...+....+ .++.+ +|++++|+..-..-.. .-.|+..-.++.+..++|++|+-+.
T Consensus 27 ~~~gI~vtl--I~Dsa~~~~---m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~Ak~~~vPf~V~a~~ 94 (191)
T 1w2w_B 27 VYDKIPSTL--ITDSSIAYR---IRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFVVAPK 94 (191)
T ss_dssp HHHTCCBEE--BCGGGHHHH---HHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHHHHHTCEEEEECCG
T ss_pred HHcCCCEEE--EechHHHHH---HHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEeccc
Confidence 344677764 334444333 34556 9999999986322111 2368887777766656999998543
No 160
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=42.13 E-value=1e+02 Score=23.89 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=6.2
Q ss_pred HHHHHHHhCCCEEE
Q 030208 122 ICKEAERLKPAAVV 135 (181)
Q Consensus 122 I~~~a~~~~~dliV 135 (181)
+.+.+++.++|+||
T Consensus 78 ~~~~~~~~~~d~II 91 (370)
T 1jq5_A 78 IANIARKAEAAIVI 91 (370)
T ss_dssp HHHHHHHTTCSEEE
T ss_pred HHHHHHhcCCCEEE
Confidence 33334444455444
No 161
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=41.98 E-value=31 Score=26.73 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCC--CcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
.+..+.++..++ +|+||+|-... |-+..+++..+.+. ++.++ +|++.|.+--
T Consensus 167 ~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~-A~kV~v~Nl~ 220 (323)
T 2o2z_A 167 KPLREGLEAIRK--ADVIVIGPGSLYTSVLPNLLVPGICEA-IKQST-ARKVYICNVM 220 (323)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCC-SEEEEECCSB
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHH-HHhCC-CCEEEEcCCC
Confidence 457889999999 99999996542 22344667777776 56778 9999997654
No 162
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=41.89 E-value=24 Score=27.70 Aligned_cols=61 Identities=5% Similarity=0.003 Sum_probs=40.3
Q ss_pred EEEecCChHHHHHHHHHHhCCCEEEEeccCCCcc-ccc----------ccCchhhHHHhcCCCccEEEEcCCC
Q 030208 111 ARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLI-QSV----------LQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 111 ~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~-~~~----------~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
+.+.+-....++++.|++.++.+|+-.+.+.... .+. .+...+..+..+.. +||.+-=..+
T Consensus 26 fNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~-VPVaLHlDHg 97 (349)
T 3elf_A 26 INCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYP-VNVALHTDHC 97 (349)
T ss_dssp EECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSS-SCEEEEECCC
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCC-CCEEEECCCC
Confidence 3444448899999999999999999876543211 111 12334567788888 9997764433
No 163
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=41.72 E-value=94 Score=22.21 Aligned_cols=84 Identities=10% Similarity=-0.002 Sum_probs=46.6
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec--CC--
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GD-- 117 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~--g~-- 117 (181)
++|.|-++++-+...++-.+++-- ..+.++.+|-...+. ... .+.....++.+...... .+
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~~-~~~~~I~~Vvs~~~~--~~~------------~~~A~~~gIp~~~~~~~~~~~r~ 65 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREP-NSSAQIDIVISNKAA--VAG------------LDKAERAGIPTRVINHKLYKNRV 65 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHST-TCSCEEEEEEESSTT--CHH------------HHHHHHTTCCEEECCGGGSSSHH
T ss_pred CeEEEEEECCchHHHHHHHHHhcC-CCCcEEEEEEeCCCC--hHH------------HHHHHHcCCCEEEECccccCchh
Confidence 368888888877666665443321 224555444443321 111 12223446766432111 12
Q ss_pred -hHHHHHHHHHHhCCCEEEEeccC
Q 030208 118 -AAKVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~g~~~ 140 (181)
..+++.+..++.++|++|+...+
T Consensus 66 ~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 66 EFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCC
T ss_pred hhhHHHHHHHHhcCCCEEEEcchh
Confidence 13678888999999999998764
No 164
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=41.71 E-value=87 Score=22.97 Aligned_cols=37 Identities=8% Similarity=0.157 Sum_probs=28.0
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecC
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~ 80 (181)
+++++|++++...|.-++..+.+. .|.+++.+|+...
T Consensus 26 ~~~vvv~lSGGiDSsv~a~l~~~~---~g~~v~av~~~~~ 62 (249)
T 3p52_A 26 SQGVVLGLSGGIDSALVATLCKRA---LKENVFALLMPTQ 62 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHH---HTTSEEEEECCSC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHH---cCCcEEEEEecCC
Confidence 588999999998887777766553 2567888888543
No 165
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=41.56 E-value=77 Score=21.21 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhCCCEEEEeccCC
Q 030208 119 AKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
.+.+.....+ +|.||+|+...
T Consensus 42 ~~~~~~~~~~--~d~ii~Gspty 62 (161)
T 3hly_A 42 PQELIEAVSS--ARGIVLGTPPS 62 (161)
T ss_dssp HHHHHHHHHH--CSEEEEECCBS
T ss_pred HHHHHHHHHh--CCEEEEEcCCc
Confidence 3444444444 66777776544
No 166
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=41.37 E-value=63 Score=23.73 Aligned_cols=90 Identities=16% Similarity=0.276 Sum_probs=47.7
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCch-hhHHH-HHHHHHHHHHHHHhhhcCceEEEEEecCC--
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN-QIVYD-MSQGLMEKLAIEAMDVAMVRTKARIVEGD-- 117 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~i~~~~~~~~g~-- 117 (181)
.++++.+++...|-.++-.+. ..|-++..++....... ..... ...+.++ ...+..+++....-..|.
T Consensus 5 MKvvvl~SGGkDSs~al~~l~----~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~----~~A~~LGIpl~~v~~~g~~~ 76 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAI----KNRFSVKFLVTMVSENEESYMYHTINANLTD----LQARALGIPLVKGFTQGEKE 76 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHH----HTTCEEEEEEEEECC--------CCSSSHHH----HHHHHHTCCEEEEEC-----
T ss_pred CEEEEEecCcHHHHHHHHHHH----HcCCeEEEEEEEcCCCCCccccCCccHHHHH----HHHHHcCCCEEEEECCCCch
Confidence 379999999988876665543 34667776655433211 10000 0011122 222333466554444442
Q ss_pred -hHHHHHHHHHHhCCCEEEEecc
Q 030208 118 -AAKVICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~g~~ 139 (181)
-.+.+.+..++.+++.+|.|.-
T Consensus 77 ~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 77 KEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp -CHHHHHHHHTTSCCSEEECC--
T ss_pred HHHHHHHHHHHhcCCcEEEECCc
Confidence 4667777777778999999974
No 167
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=41.34 E-value=64 Score=25.41 Aligned_cols=81 Identities=9% Similarity=-0.016 Sum_probs=45.4
Q ss_pred CChhhHHHHHHHHHHhccCCC-EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHH
Q 030208 50 HGPNSKHAFDWALIHLCRLAD-TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAER 128 (181)
Q Consensus 50 ~s~~s~~a~~~a~~la~~~~a-~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~ 128 (181)
....+++.+++|.++|+..+. +|+++|=.+-- ........+..++..+ +-.++.++..+ ..+....++.-=
T Consensus 164 T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvl--k~s~glf~~~~~eva~---eypdv~~~~~~-vD~~am~lv~~P-- 235 (364)
T 3flk_A 164 TRRGVDRILKYAFDLAEKRERKHVTSATKSNGM--AISMPYWDKRTEAMAA---HYPHVSWDKQH-IDILCARFVLQP-- 235 (364)
T ss_dssp EHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTS--TTHHHHHHHHHHHHHT---TCTTCEEEEEE-HHHHHHHHHHCG--
T ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEEECcchh--hhHHHHHHHHHHHHHH---HCCCceEEeeE-HHHHHHHHHhCc--
Confidence 347789999999999988876 69988853321 1112223333333221 12346655432 344454444443
Q ss_pred hCCCEEEEec
Q 030208 129 LKPAAVVIGS 138 (181)
Q Consensus 129 ~~~dliV~g~ 138 (181)
.++|.||...
T Consensus 236 ~~FDVivt~N 245 (364)
T 3flk_A 236 ERFDVVVASN 245 (364)
T ss_dssp GGCSEEEECH
T ss_pred ccCcEEEecc
Confidence 3488777664
No 168
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=40.46 E-value=26 Score=27.37 Aligned_cols=51 Identities=12% Similarity=0.283 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCC--CcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
.+..+.++..++ +|+||+|-... |-+..+++..+.+. ++.++ +|++.|.+-
T Consensus 177 ~a~p~al~AI~~--AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~-A~kV~V~Nl 229 (341)
T 2p0y_A 177 QAVQPVIDAIMA--ADQIVLGPGSLFTSILPNLTIGNIGRA-VCESD-AEVVYICNI 229 (341)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCS-SEEEEECCS
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCccHHHH-HHhCC-CCEEEEeCC
Confidence 456778888888 99999996542 22344556666666 57788 999998753
No 169
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=40.33 E-value=83 Score=22.12 Aligned_cols=70 Identities=7% Similarity=-0.006 Sum_probs=40.6
Q ss_pred HHHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcC--CCccEEEEcC
Q 030208 98 AIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC--KTAPIIVVPG 170 (181)
Q Consensus 98 ~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~--~~~pVlvv~~ 170 (181)
....+...|.++.. .-...+.+.+++.+++.++|+|.+.......... +..+.+.+=+.. +++||++--.
T Consensus 108 va~~l~~~G~~v~~-LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 108 VAMMLESGGFTVYN-LGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMN--MKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHHHTTCEEEE-CCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHH--HHHHHHHHHHTTCGGGCEEEEEST
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHhcCCCCCCeEEEECC
Confidence 44445555555432 1123689999999999999999998764433322 223333333332 1277776543
No 170
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=40.20 E-value=1.3e+02 Score=23.54 Aligned_cols=83 Identities=10% Similarity=0.144 Sum_probs=45.8
Q ss_pred cCChhhHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHH
Q 030208 49 DHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAE 127 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~ 127 (181)
-....+++.+++|.++|+.. ..+|+++|=.+.-. .......+..++..++ +-.++.++..+ ..+....++.-=
T Consensus 154 ~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk--~sdglf~~~~~eva~~--eyp~i~~~~~~-vD~~~~qlv~~P- 227 (349)
T 3blx_A 154 MTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMK--LGDGLFRNIITEIGQK--EYPDIDVSSII-VDNASMQAVAKP- 227 (349)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTST--THHHHHHHHHHHHHHH--HCTTSEEEEEE-HHHHHHHHHHCG-
T ss_pred eCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccch--hhHHHHHHHHHHHHHh--hCCCeeEEEee-HHHHHHHHhhCc-
Confidence 34477899999999999887 45788888544221 1122233333332211 12246655433 344444444433
Q ss_pred HhCCCEEEEec
Q 030208 128 RLKPAAVVIGS 138 (181)
Q Consensus 128 ~~~~dliV~g~ 138 (181)
.++|.||...
T Consensus 228 -~~FDVivt~N 237 (349)
T 3blx_A 228 -HQFDVLVTPS 237 (349)
T ss_dssp -GGCSEEEECH
T ss_pred -ccccEEEECC
Confidence 3488777664
No 171
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=40.11 E-value=74 Score=24.97 Aligned_cols=81 Identities=11% Similarity=0.115 Sum_probs=45.1
Q ss_pred cCChhhHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHH
Q 030208 49 DHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEA 126 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a 126 (181)
-....+++.+++|.++|+.. ..+|+++|=.+.-. . .+....+..++..++ .++.++..+ ..+....++.-=
T Consensus 160 ~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk--~----sdglf~~~~~eva~eypdI~~~~~~-vD~~~m~lv~~P 232 (354)
T 3blx_B 160 ITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQR--L----ADGLFVNVAKELSKEYPDLTLETEL-IDNSVLKVVTNP 232 (354)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTC--H----HHHHHHHHHHHHGGGCTTSEEEEEE-HHHHHHHHHHCG
T ss_pred EcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchH--h----HHHHHHHHHHHHHHHCCCceEEEEE-HHHHHHHHhhCh
Confidence 34477899999999999887 56788888644221 1 122233333333332 245555433 334444444333
Q ss_pred HHhCCC--EEEEec
Q 030208 127 ERLKPA--AVVIGS 138 (181)
Q Consensus 127 ~~~~~d--liV~g~ 138 (181)
.++| .||...
T Consensus 233 --~~FD~~Vivt~N 244 (354)
T 3blx_B 233 --SAYTDAVSVCPN 244 (354)
T ss_dssp --GGGTTEEEEECH
T ss_pred --hhCCceEEEecC
Confidence 3477 777653
No 172
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=39.84 E-value=30 Score=26.94 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCC--CcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
.+..+.++..++ +|+||+|-... |-+..+++..+.+. ++.++ +|++.|.+--
T Consensus 166 ~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~-A~kV~v~N~~ 219 (332)
T 2ppv_A 166 EPMNEAIEALEQ--ADLIVLGPGSLYTSVISNLCVKGISEA-LLRTS-APKLYVSNVM 219 (332)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCC-SCEEEECCSB
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHH-HHhCC-CCEEEEcCCC
Confidence 456889999999 99999996542 22334556666666 57788 9999997653
No 173
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=39.54 E-value=1.3e+02 Score=23.12 Aligned_cols=74 Identities=12% Similarity=-0.040 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec---C----ChHHHHH
Q 030208 52 PNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE---G----DAAKVIC 123 (181)
Q Consensus 52 ~~s~~a~~~a~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~---g----~~~~~I~ 123 (181)
+.+.+++..|.+++. .+ .+++++-+-+. .+ .+++. .. ..|.+--+.+.. + ...+.|.
T Consensus 16 ~~~~eal~~A~~L~e-~g~~~V~av~~G~~---------~~-~~~~~---a~-a~GaDkv~~v~d~~l~~~~~~~a~~La 80 (320)
T 1o97_D 16 PVSLELIGAANGLKK-SGEDKVVVAVIGSQ---------AD-AFVPA---LS-VNGVDELVVVKGSSIDFDPDVFEASVS 80 (320)
T ss_dssp THHHHHHHHHHHHCS-STTCEEEEEEESTT---------GG-GGHHH---HC-BTTCSEEEEEECSCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-CCCCcEEEEEECCc---------HH-HHHHH---HH-hcCCceEEEEeCcccCCCHHHHHHHHH
Confidence 678899999999987 66 58888876431 11 11110 11 112332222221 1 2357788
Q ss_pred HHHHHhCCCEEEEeccC
Q 030208 124 KEAERLKPAAVVIGSRG 140 (181)
Q Consensus 124 ~~a~~~~~dliV~g~~~ 140 (181)
+.+++.++|+|++|...
T Consensus 81 ~~i~~~~pdlVL~g~ts 97 (320)
T 1o97_D 81 ALIAAHNPSVVLLPHSV 97 (320)
T ss_dssp HHHHHHCCSEEEEECSH
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 88889899999999853
No 174
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=39.15 E-value=78 Score=23.31 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=27.1
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
.++++|++++...|..++..+.+.. +.++..+|+..
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~---~~~v~av~~~~ 60 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVF---KENAHALLMPS 60 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEECCC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhC---CCCEEEEEeCC
Confidence 4789999999988887777776554 34677888754
No 175
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=39.03 E-value=1.1e+02 Score=22.20 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=55.2
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec---CC
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE---GD 117 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~---g~ 117 (181)
.+..+++.+...-...++...+ ...+ .+++++++-+.--.....+.-...+++ ..++.-.+.....-.. .+
T Consensus 37 ~~~~l~lsgGstp~~~y~~L~~--~~idw~~v~~f~~DEr~vp~~~~~Sn~~~~~~---~ll~~~~~~~~~~~~~~~~~~ 111 (233)
T 3nwp_A 37 GKASLVVSGGSTPLKLFQLLSM--KSIDWSDVYITLADERWVEADADASNERLVRE---HLLQNRASNAKFRGLKNMFST 111 (233)
T ss_dssp SCEEEEECCSSTTHHHHHHHHH--CCSCGGGEEEEESEEESSCTTSTTCHHHHHHH---HTSSGGGGGSEECCSCCSSSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHh--cCCChhHeEEEeCeecccCCCChHHHHHHHHH---HhhccCCccceEEcCCCCCCC
Confidence 4466777666555566665543 2223 578888886632111111111112221 2222211222222212 25
Q ss_pred hHHHHHHHHHHh-----CCCEEEEeccCCCcccccccCch
Q 030208 118 AAKVICKEAERL-----KPAAVVIGSRGRGLIQSVLQGSV 152 (181)
Q Consensus 118 ~~~~I~~~a~~~-----~~dliV~g~~~~~~~~~~~~gs~ 152 (181)
+.++..+|.+.. ++|++++|--..+.....+-|+.
T Consensus 112 ~~~~~~~ye~~i~~~~~~~Dl~lLG~G~dGHias~fPg~~ 151 (233)
T 3nwp_A 112 AEAGADMAAESLSNFPRPFDVVVLGMGNDGHTCSWFPCSA 151 (233)
T ss_dssp HHHHHHHHHHHTTTSCSSBSEEEECCCTTSCBTTBCTTCT
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEccCCCCCeeecCCCCc
Confidence 677777776553 57999999887777777777764
No 176
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=38.99 E-value=1.1e+02 Score=22.37 Aligned_cols=122 Identities=10% Similarity=0.070 Sum_probs=63.5
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCce-EEEEEec----
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVR-TKARIVE---- 115 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-~~~~~~~---- 115 (181)
.+..+++.+...-...++...+.....+ .+++++++-+..-.....+.-...++ +..++.-++. ..++...
T Consensus 39 ~~~~l~LsgGstP~~~y~~L~~~~~~idw~~v~~f~~DEr~vp~~~~~Sn~~~~~---~~ll~~v~i~~~~i~~~~~~~~ 115 (251)
T 3tx2_A 39 GKAMIVLTGGGTGIALLKHLRDVASGLDWTNVHVFWGDDRYVPKTDPERNAWQAW---EALLEHVNFPLRNMHAMPNSES 115 (251)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHHTTSCGGGEEEEESEEESSCTTCTTCHHHHHH---HHTGGGSCCCGGGBCCCCCTTS
T ss_pred CCEEEEECCCchHHHHHHHHHhhccCCCCceeEEEeeeeccCCCCChHHHHHHHH---HHhhccCCCCHHHEEECCCccc
Confidence 4567777777666667776665432233 57888888653211111111111111 2233332221 1112222
Q ss_pred ---CChHHHHHHHHHH-----------hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 116 ---GDAAKVICKEAER-----------LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 116 ---g~~~~~I~~~a~~-----------~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
.++.++..+|.+. .++|++++|--..+.....+-|+. .+..+. ..|..+..
T Consensus 116 ~~~~~~~~~a~~Ye~~i~~~~~~~~~~~~~Dl~lLG~G~DGH~as~fPg~~---~~~~~~-~~vv~~~~ 180 (251)
T 3tx2_A 116 EYGTDLDAAALAYEQLLAANAEPGQDCPAFDVHLLGMGGEGHINSLFPHTD---AVKETQ-RLVVAVPD 180 (251)
T ss_dssp SCTTCHHHHHHHHHHHHHHTSCTTCSSCCCSEEEECCCTTCCBTTBCTTCH---HHHCSS-CSEEEESC
T ss_pred ccCCCHHHHHHHHHHHHHhhhccccCCCCCCEEEECCCCCCceEEcCCcCh---hhccCc-ceEEEecC
Confidence 2556566555432 257999999877777776666763 445555 66666543
No 177
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=38.41 E-value=1.6e+02 Score=24.00 Aligned_cols=112 Identities=6% Similarity=-0.010 Sum_probs=64.9
Q ss_pred cCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchh----hHHH--HHHHHHHHHHHHHhhhcCceEEEEEec-CChHHH
Q 030208 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ----IVYD--MSQGLMEKLAIEAMDVAMVRTKARIVE-GDAAKV 121 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~----~~~~--~~~~~l~~~~~~~~~~~~i~~~~~~~~-g~~~~~ 121 (181)
|..-..-.++..|++. + .+..|.|.++.... .... -..+.+.++. +.+...|+.. .+.. |++.+.
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~-~~L~~~G~~L--~v~~~g~~~~~ 92 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD-SSLRSLGTCL--ITKRSTDSVAS 92 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHH-HHHHHTTCCE--EEEECSCHHHH
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhcccCCcchHHHHHHHHHHHHHH-HHHHHCCCeE--EEEeCCCHHHH
Confidence 4445555777777764 3 46778887754211 1111 2234455533 3334445554 3444 699999
Q ss_pred HHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 122 I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
|.+++++.+++.|+........ . .-.-....+.+.... +++..+...
T Consensus 93 l~~l~~~~~~~~V~~~~~~~p~-~-~~rd~~v~~~l~~~g-i~~~~~~~~ 139 (509)
T 1u3d_A 93 LLDVVKSTGASQIFFNHLYDPL-S-LVRDHRAKDVLTAQG-IAVRSFNAD 139 (509)
T ss_dssp HHHHHHHHTCCEEEEECCCSHH-H-HHHHHHHHHHHHTTT-CEEEEECCS
T ss_pred HHHHHHHcCCCEEEEecccCHH-H-HHHHHHHHHHHHHcC-cEEEEECCC
Confidence 9999999999999887532211 1 111223355666667 888887654
No 178
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=37.57 E-value=1.1e+02 Score=22.00 Aligned_cols=73 Identities=11% Similarity=-0.021 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCCch---hhHHHHHHHHHHHHHHHHhhhcCceEEEEEecC------ChHHHHHH
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSVQN---QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG------DAAKVICK 124 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g------~~~~~I~~ 124 (181)
+.+.++.++++|...|++..++|.-..... ....+...+.++++. .+..++.+-.+...+ +..+.+.+
T Consensus 87 ~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~---a~~~gv~l~lEn~~~~~~~~~~~~~~~~~ 163 (285)
T 1qtw_A 87 SRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIAL---DKTQGVTAVIENTAGQGSNLGFKFEHLAA 163 (285)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHH---HHCSSCEEEEECCCCCTTBCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHH---hccCCCEEEEecCCCCCCcccCCHHHHHH
Confidence 556788889999999999888886433211 112223333344432 123456655554432 35677888
Q ss_pred HHHHh
Q 030208 125 EAERL 129 (181)
Q Consensus 125 ~a~~~ 129 (181)
+++..
T Consensus 164 l~~~v 168 (285)
T 1qtw_A 164 IIDGV 168 (285)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 88875
No 179
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=37.17 E-value=34 Score=26.63 Aligned_cols=62 Identities=10% Similarity=-0.053 Sum_probs=39.0
Q ss_pred hhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccc--cccCchhhHHHhcCCCccEEEEcC
Q 030208 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQS--VLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 102 ~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~--~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
+...|++++.. ..+.+..+. .++|++++|+..-..-.. .-.|+..-.++.+..++|++|+-+
T Consensus 188 L~~~GI~vtlI--~Dsa~~~~M-----~~Vd~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 188 LASYGIPVIYV--VDSAARHYM-----KMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251 (338)
T ss_dssp HHHTTCCEEEE--CGGGTTTTG-----GGCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEEEEECC
T ss_pred HHhCCCCEEEE--ehHHHHHHH-----HhCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEecc
Confidence 34457887653 333333333 459999999986322111 236888777776666699999843
No 180
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=37.07 E-value=77 Score=19.86 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcC--CCccEEEEcCCCC
Q 030208 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC--KTAPIIVVPGKGT 173 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~--~~~pVlvv~~~~~ 173 (181)
.++.++.+++..+|+|++...-.+ ..+ -...+.+-... +++||+++-....
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~~~~ 87 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDIIG-ENS---PNLCLKLKRSKGLKNVPLILLFSSEH 87 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEECC--
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CcH---HHHHHHHHcCcccCCCCEEEEecCCC
Confidence 344455666678999999865321 111 13344554443 3389998866544
No 181
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=36.77 E-value=1.2e+02 Score=24.17 Aligned_cols=78 Identities=10% Similarity=0.015 Sum_probs=45.5
Q ss_pred ChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCChHHHHHHHHHHh
Q 030208 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAERL 129 (181)
Q Consensus 51 s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~~~~~I~~~a~~~ 129 (181)
...+++.+++|.++|+....+|+++|=.+-- . .. ...++..++..++ .++.++..+ ..+....++.-= .
T Consensus 206 r~~~eRIar~AFe~A~~rrkkVT~v~KaNVl--k-~s----glf~~~~~eva~eYPdV~~~~~~-VD~~amqLV~~P--~ 275 (405)
T 3r8w_A 206 AHEIDRIARVAFETARKRRGKLCSVDKANVL--E-AS----ILWRKRVTALASEYPDVELSHMY-VDNAAMQLVRDP--K 275 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTC--H-HH----HHHHHHHHHHGGGSTTSEEEEEE-HHHHHHHHHHCG--G
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECchhh--c-cc----cHHHHHHHHHHhHCCCCeEEeee-HHHHHHHHHhCh--h
Confidence 3678999999999998877898888853321 1 11 2333334443333 356655433 344454444433 3
Q ss_pred CCCEEEEec
Q 030208 130 KPAAVVIGS 138 (181)
Q Consensus 130 ~~dliV~g~ 138 (181)
++|.||...
T Consensus 276 ~FDViVt~N 284 (405)
T 3r8w_A 276 QFDTIVTNN 284 (405)
T ss_dssp GCSEEEECH
T ss_pred hCcEEeecc
Confidence 488777653
No 182
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=36.47 E-value=1.8e+02 Score=23.91 Aligned_cols=80 Identities=11% Similarity=-0.036 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecC--ChHHHHHHH---H-HHhCCCEEEEeccCCCcccccccCchhhHH
Q 030208 83 NQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--DAAKVICKE---A-ERLKPAAVVIGSRGRGLIQSVLQGSVGEYC 156 (181)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g--~~~~~I~~~---a-~~~~~dliV~g~~~~~~~~~~~~gs~~~~l 156 (181)
.....+..++..+++.+.......+.+++.- .| .-.+.+.++ + ++.++|.||+=.+.-+. ++..-.+
T Consensus 20 g~~~~~~v~~~~~~~~~~l~~~~~l~~~vv~-~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~------a~~~i~~ 92 (500)
T 4f2d_A 20 GPETLRQVTQHAEHVVNALNTEAKLPCKLVL-KPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSP------AKMWING 92 (500)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTCCSSEEEE-CCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCC------THHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccCCCeEEEe-cCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCcc------HHHHHHH
Confidence 3344455666666666555555455655433 23 334444444 4 44578999887664443 3444678
Q ss_pred HhcCCCccEEEEcC
Q 030208 157 LHHCKTAPIIVVPG 170 (181)
Q Consensus 157 l~~~~~~pVlvv~~ 170 (181)
++..+ +||++...
T Consensus 93 l~~l~-~PvL~~~~ 105 (500)
T 4f2d_A 93 LTMLN-KPLLQFHT 105 (500)
T ss_dssp HHHCC-SCEEEEEC
T ss_pred HHhcC-CCEEEEeC
Confidence 88999 99999853
No 183
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=36.46 E-value=1.2e+02 Score=21.89 Aligned_cols=105 Identities=19% Similarity=0.142 Sum_probs=56.0
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCc-eEEEEEecC---
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMV-RTKARIVEG--- 116 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i-~~~~~~~~g--- 116 (181)
.+..+++.+...-...++...+ ...+ .+++++++-+.--.....+.-...++ +..++. .+ ...+....+
T Consensus 33 ~~~~l~LsgGstp~~~y~~L~~--~~idw~~v~~f~~DEr~vp~~~~~Sn~~~~~---~~ll~~-~~~~~~~~~~~~~~~ 106 (226)
T 3lwd_A 33 ERALLVVSGGSTPKPFFTSLAA--KALPWARVDVTLADERWVTADDADSNARLVR---ETLLVG-PAAEACFHPLTTDDD 106 (226)
T ss_dssp SCEEEEECCSSTTHHHHHHHHT--SCSCGGGEEEEESEEESSCTTSTTCHHHHHH---HHTSSG-GGGGSEEECSCCSSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHh--cCCCchhEEEEEeeecccCCCChHHHHHHHH---HHhcCC-CCcHHhEecCCCCcC
Confidence 4567777777666666666654 2223 57888888663211111111111221 122222 22 223332222
Q ss_pred ChHHHHHHHHHHh-----CCCEEEEeccCCCcccccccCch
Q 030208 117 DAAKVICKEAERL-----KPAAVVIGSRGRGLIQSVLQGSV 152 (181)
Q Consensus 117 ~~~~~I~~~a~~~-----~~dliV~g~~~~~~~~~~~~gs~ 152 (181)
++.++..+|.+.. ++|++++|--..+.....+-|+.
T Consensus 107 ~~~~~~~~ye~~i~~~~~~~Dl~lLG~G~dGH~as~fPg~~ 147 (226)
T 3lwd_A 107 TPEAGVETVAERLESLPWPASAVILGMGGDGHTASLFPDSE 147 (226)
T ss_dssp SHHHHHHHHHHHHHTSCSSBSEEEECCCTTSCBTTBCTTCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEECcCCCCCeeecCCCCh
Confidence 5666666665433 57999999887777777776764
No 184
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=36.23 E-value=1.4e+02 Score=22.70 Aligned_cols=84 Identities=10% Similarity=0.010 Sum_probs=49.9
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec-CC--
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GD-- 117 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~-g~-- 117 (181)
.++|+|-++++.+...++=.+.+- ...++++.+|-..... . .. ..+..++++...-.. .+
T Consensus 105 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~I~~Visn~~~--------~----~~----~A~~~gIp~~~~~~~~~~r~ 167 (302)
T 3o1l_A 105 KKRVVLMASRESHCLADLLHRWHS-DELDCDIACVISNHQD--------L----RS----MVEWHDIPYYHVPVDPKDKE 167 (302)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHT-TCSCSEEEEEEESSST--------T----HH----HHHTTTCCEEECCCCSSCCH
T ss_pred CcEEEEEEeCCchhHHHHHHHHHC-CCCCcEEEEEEECcHH--------H----HH----HHHHcCCCEEEcCCCcCCHH
Confidence 478999998887766665555432 2235565554443321 0 11 123446776542111 12
Q ss_pred -hHHHHHHHHHHhCCCEEEEeccCC
Q 030208 118 -AAKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
..+++++..++.++|++|+....+
T Consensus 168 ~~~~~~~~~l~~~~~DliVlagym~ 192 (302)
T 3o1l_A 168 PAFAEVSRLVGHHQADVVVLARYMQ 192 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCCS
T ss_pred HHHHHHHHHHHHhCCCEEEHhHhhh
Confidence 246789999999999999997643
No 185
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=36.22 E-value=1.4e+02 Score=22.53 Aligned_cols=110 Identities=7% Similarity=-0.022 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecC--ChH--HHHHHHHH
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--DAA--KVICKEAE 127 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g--~~~--~~I~~~a~ 127 (181)
...+++.-++.....|. +-+.+.-.. ......++..+.++...+.... ..+.+- +-.| +.. -++.+.|+
T Consensus 26 D~~~l~~lv~~li~~Gv--~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-~rvpvi--aGvg~~~t~~ai~la~~a~ 100 (301)
T 3m5v_A 26 DEQSYARLIKRQIENGI--DAVVPVGTTGESATLTHEEHRTCIEIAVETCKG-TKVKVL--AGAGSNATHEAVGLAKFAK 100 (301)
T ss_dssp CHHHHHHHHHHHHHTTC--CEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEE--EECCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC--CEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCCeEE--EeCCCCCHHHHHHHHHHHH
Confidence 44555555555444453 333333222 2233345555555554433322 124443 2233 333 33345678
Q ss_pred HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 128 RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 128 ~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+.++|.+++..........--+=..-+.|+..+. .||++..
T Consensus 101 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilYn 141 (301)
T 3m5v_A 101 EHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVD-IPVLLYN 141 (301)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS-SCEEEEE
T ss_pred HcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEe
Confidence 8899999998764333221111122367888888 9999874
No 186
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=35.22 E-value=1.4e+02 Score=22.33 Aligned_cols=111 Identities=9% Similarity=0.008 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHH--HHHHHHHHh
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAERL 129 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~--~I~~~a~~~ 129 (181)
...+++.-++.....|.. -+.+.-.. ......++..+.++...+.... .+.+-.-+-.-+..+ ++.+.|++.
T Consensus 20 D~~~l~~lv~~li~~Gv~--gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g--r~pviaGvg~~~t~~ai~la~~a~~~ 95 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTN--SIVAVGTTGEASTLSMEEHTQVIKEIIRVANK--RIPIIAGTGANSTREAIELTKAAKDL 95 (291)
T ss_dssp CHHHHHHHHHHHHHHTCC--EEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSCEEEECCCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCC--EEEECccccccccCCHHHHHHHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 344555544544444532 23333222 2233345555555554443322 244432221113333 345568888
Q ss_pred CCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 130 ~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
++|.+++..........--+=..-+.|+..+. .||++..
T Consensus 96 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~-lPiilYn 134 (291)
T 3tak_A 96 GADAALLVTPYYNKPTQEGLYQHYKAIAEAVE-LPLILYN 134 (291)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC-SCEEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 99999988754332221111123367888888 9999874
No 187
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=34.89 E-value=79 Score=21.86 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=8.3
Q ss_pred HHHHHHHHhCCCEEEEe
Q 030208 121 VICKEAERLKPAAVVIG 137 (181)
Q Consensus 121 ~I~~~a~~~~~dliV~g 137 (181)
.+++.+++.++|+||+.
T Consensus 23 ~~~~~~~~~~~D~vi~~ 39 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALI 39 (228)
T ss_dssp HHHTHHHHHTCSEEEEE
T ss_pred HHHHHHhhcCCCEEEEC
Confidence 34444444455555554
No 188
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=34.34 E-value=29 Score=26.91 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCC--CcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
.+..+.++..++ +|+||+|-... |-+..+++..+.+. ++.++ +|++.|.+-
T Consensus 173 ~a~p~al~AI~~--AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~-A~kV~v~Nl 225 (326)
T 2q7x_A 173 LASRRVVQTILE--SDMIVLGPGSLFTSILPNIVIXEIGRA-LLETX-AEIAYVCNI 225 (326)
T ss_dssp CBCSHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCS-SEEEEECCS
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHHhhhhhhccHHHH-HHhcc-CceEEeccC
Confidence 456778888888 99999996542 22344556666666 57788 999998763
No 189
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=34.24 E-value=1.5e+02 Score=22.40 Aligned_cols=84 Identities=8% Similarity=-0.077 Sum_probs=50.6
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec-CCh-
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GDA- 118 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~-g~~- 118 (181)
.++|+|-++++.+...++=.+.+- ...++++.++-..... . .. ..+..++++...-.. .+.
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~--~----------~~----~A~~~gIp~~~~~~~~~~r~ 157 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWKM-GELKMDIVGIVSNHPD--F----------AP----LAAQHGLPFRHFPITADTKA 157 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEESSST--T----------HH----HHHHTTCCEEECCCCSSCHH
T ss_pred CCEEEEEEcCCCcCHHHHHHHHHc-CCCCcEEEEEEeCcHH--H----------HH----HHHHcCCCEEEeCCCcCCHH
Confidence 478999999887776666665443 2345665554443321 1 11 123446776542211 222
Q ss_pred --HHHHHHHHHHhCCCEEEEeccCC
Q 030208 119 --AKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 119 --~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
.+++++..++.++|++|+..+.+
T Consensus 158 ~~~~~~~~~l~~~~~Dlivla~y~~ 182 (292)
T 3lou_A 158 QQEAQWLDVFETSGAELVILARYMQ 182 (292)
T ss_dssp HHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred HHHHHHHHHHHHhCCCEEEecCchh
Confidence 35789999999999999997643
No 190
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=33.78 E-value=69 Score=22.93 Aligned_cols=67 Identities=9% Similarity=-0.036 Sum_probs=39.4
Q ss_pred HHHHhhhcCceEEEEEecC--ChHHHHHHHHHHhCCCEEEE--eccCCCcccccccCchhhHHHhcCC--CccEEEEc
Q 030208 98 AIEAMDVAMVRTKARIVEG--DAAKVICKEAERLKPAAVVI--GSRGRGLIQSVLQGSVGEYCLHHCK--TAPIIVVP 169 (181)
Q Consensus 98 ~~~~~~~~~i~~~~~~~~g--~~~~~I~~~a~~~~~dliV~--g~~~~~~~~~~~~gs~~~~ll~~~~--~~pVlvv~ 169 (181)
....++..|.++. .-| -+.+.+++.++++++|+|.+ ...-..... .+..+.+.+-+... ++||++=-
T Consensus 112 v~~~l~~~G~~Vi---~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 112 VTTMLGANGFQIV---DLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHHHHHTSCEEE---ECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEES
T ss_pred HHHHHHHCCCeEE---EcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEEC
Confidence 4445556555543 234 68999999999999999999 544322222 12344444444432 27777643
No 191
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=33.74 E-value=36 Score=26.78 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=41.0
Q ss_pred EEEecCChHHHHHHHHHHhCCCEEEEeccCCCc------ccc------cc-----cCchhhHHHhcCCCccEEEEcCCC
Q 030208 111 ARIVEGDAAKVICKEAERLKPAAVVIGSRGRGL------IQS------VL-----QGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 111 ~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~------~~~------~~-----~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
+.+.+-....++++.|++.++.+|+-.+.+... +.. .+ +...+..++.+.. +||.+-=..+
T Consensus 34 fNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~A~~~~-VPVaLHlDHg 111 (358)
T 1dos_A 34 VNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG-VPVILHTDHC 111 (358)
T ss_dssp EECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCC
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHHHHHHCC-CCEEEECCCC
Confidence 344445889999999999999999988765321 111 12 2345566777888 9987764433
No 192
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=33.55 E-value=54 Score=17.25 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=18.5
Q ss_pred eEEEEEecC-ChHHHHHHHHHHhCCCE
Q 030208 108 RTKARIVEG-DAAKVICKEAERLKPAA 133 (181)
Q Consensus 108 ~~~~~~~~g-~~~~~I~~~a~~~~~dl 133 (181)
++..+.... +..++|+.||.+.+.|-
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchh
Confidence 344445545 78899999999877764
No 193
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=33.33 E-value=84 Score=26.44 Aligned_cols=71 Identities=8% Similarity=0.005 Sum_probs=42.7
Q ss_pred HHHHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 97 LAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 97 ~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
+....+...|.++.. .-..-+.+.|++.+++.++|+|.+.......... +..+.+.+-+...++||+|--.
T Consensus 117 iva~~L~~~G~eVi~-LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~--m~~~i~~Lr~~g~~i~ViVGGa 187 (579)
T 3bul_A 117 IVGVVLQCNNYEIVD-LGVMVPAEKILRTAKEVNADLIGLSGLITPSLDE--MVNVAKEMERQGFTIPLLIGGA 187 (579)
T ss_dssp HHHHHHHTTTCEEEE-CCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHH--HHHHHHHHHHTTCCSCEEEEST
T ss_pred HHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHH--HHHHHHHHHHcCCCCeEEEEcc
Confidence 344555665655432 1123689999999999999999998764433321 2334444433333388877543
No 194
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=33.19 E-value=92 Score=19.64 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
.+.++.++...+|+|++...-.+ ..++ ...+.+-...+.+|++++-...
T Consensus 39 ~~al~~~~~~~~dlvllD~~lp~-~~g~---~l~~~l~~~~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 39 INAIQIALKHPPNVLLTDVRMPR-MDGI---ELVDNILKLYPDCSVIFMSGYS 87 (141)
T ss_dssp HHHHHHHTTSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEECCST
T ss_pred HHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCcEEEEeCCC
Confidence 34444555556777777754221 1111 2233343333337777775443
No 195
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=32.84 E-value=1.2e+02 Score=20.69 Aligned_cols=104 Identities=7% Similarity=-0.027 Sum_probs=58.1
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCC-
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGD- 117 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~- 117 (181)
..+|++-+.+... ..++.+|.++.... |-+| +-. . . ....+++ .|+.++.......
T Consensus 11 ~g~V~lsv~D~dK-~~~v~~ak~~~~ll~Gf~l--~AT-~--g---------------Ta~~L~e~~Gl~v~~v~k~~eG 69 (152)
T 1b93_A 11 RKHIALVAHDHCK-QMLMSWVERHQPLLEQHVL--YAT-G--T---------------TGNLISRATGMNVNAMLSGPMG 69 (152)
T ss_dssp SCEEEEEECGGGH-HHHHHHHHHTHHHHTTSEE--EEE-T--T---------------HHHHHHHHHCCCCEEECCGGGT
T ss_pred CCEEEEEEehhhH-HHHHHHHHHHHHHhCCCEE--EEc-c--H---------------HHHHHHHHhCceeEEEEecCCC
Confidence 4778888776644 56788887777653 3322 211 1 1 1112222 5677775432111
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEE
Q 030208 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (181)
-...|.+..++.++|+||--....+.-.+..-|...++.+-... +|++
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~-IP~~ 117 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWN-IPVA 117 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTT-CCEE
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcC-CCEE
Confidence 34579999999999999998762111111122444455555555 6654
No 196
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=32.30 E-value=1.5e+02 Score=21.94 Aligned_cols=121 Identities=11% Similarity=0.091 Sum_probs=58.1
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceE-EEEEecC---
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRT-KARIVEG--- 116 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~~~~g--- 116 (181)
.+..+++.+...-...++...+.....+ .+++++++-+..-.....+.-...+ .+..++.-++.. .+....+
T Consensus 55 ~~~~l~LsgGstP~~~y~~L~~~~~~idw~~v~~f~~DEr~vp~~~~~Sn~~~~---~~~Ll~~v~i~~~~i~~~~~~~~ 131 (268)
T 3ico_A 55 GQALIVLTGGGNGIALLRYLSAQAQQIEWSKVHLFWGDERYVPEDDDERNLKQA---RRALLNHVDIPSNQVHPMAASDG 131 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHGGGSCGGGEEEEESEEECSCTTCTTCHHHHH---HHHTGGGSCCCGGGBCCCCCTTS
T ss_pred CceEEEEecCCchhHHHHHHHHHhhhhhheeeEEeecccccCCCCcchhHHHHH---HHHHHhccCCcccccccccccCC
Confidence 3456666666555556665554332233 4677777654321110011111111 122233322221 1122222
Q ss_pred ----ChHHHHHHHH---HHh--------CCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 117 ----DAAKVICKEA---ERL--------KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 117 ----~~~~~I~~~a---~~~--------~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
++.++..+|. ++. ++|++++|--..+.....+-|+. .+..+. ..|..+.
T Consensus 132 ~~~~~~~~~a~~Ye~~i~~~~~~~~~~p~~Dl~lLGmG~DGH~as~fPg~~---~~~~t~-~~vv~~~ 195 (268)
T 3ico_A 132 DFGGDLDAAALAYEQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFPHSP---AVLEST-RMVVAVD 195 (268)
T ss_dssp TTTTCHHHHHHHHHHHHHHHSSTTCSSCCCSEEEECCCTTCCBTTBCTTCH---HHHCSS-CSEEEES
T ss_pred CcccchhHHHHHHHHHHhhccCCCCCCCCcceEEeccCCcccccccCCCCh---hhhhhc-eEEEEec
Confidence 4555555553 332 68999999877777776676753 333444 4455554
No 197
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=32.14 E-value=96 Score=19.53 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=10.9
Q ss_pred ChHHHHHHHHHH-hCCCEEEEecc
Q 030208 117 DAAKVICKEAER-LKPAAVVIGSR 139 (181)
Q Consensus 117 ~~~~~I~~~a~~-~~~dliV~g~~ 139 (181)
+..+++..+.+. ..+|+|++...
T Consensus 53 ~~~~~~~~~~~~~~~~dlvi~D~~ 76 (146)
T 4dad_A 53 GRAAQIVQRTDGLDAFDILMIDGA 76 (146)
T ss_dssp CCHHHHTTCHHHHTTCSEEEEECT
T ss_pred CHHHHHHHHHhcCCCCCEEEEeCC
Confidence 334444444443 45566665543
No 198
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=31.92 E-value=1.5e+02 Score=21.63 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHH--hCCCEEEEecc
Q 030208 89 MSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAER--LKPAAVVIGSR 139 (181)
Q Consensus 89 ~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~--~~~dliV~g~~ 139 (181)
...+.++++. +.....+....+.+. |.+...-+..+.+ .++|.+|+|+.
T Consensus 169 ~~l~ki~~lr-~~~~~~~~~~~I~vd-GGI~~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 169 LILDRVIQVE-KRLGNRRVEKLINID-GSMTLELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHHH-HHHGGGGGGCEEEEE-SSCCHHHHHHHHHSSSCCCCEEECGG
T ss_pred hHHHHHHHHH-HHHHhcCCCceEEEE-CCcCHHHHHHHHHhCCCCcEEEEeeH
Confidence 3444555533 333333344444444 4443444445556 79999999976
No 199
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=31.91 E-value=1.7e+02 Score=22.23 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=22.7
Q ss_pred CceEEEEEecC-C--hHHHHHHHHHHhCCCEEEEecc
Q 030208 106 MVRTKARIVEG-D--AAKVICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 106 ~i~~~~~~~~g-~--~~~~I~~~a~~~~~dliV~g~~ 139 (181)
++.+...+..+ + -...+.+.+.+.++|.|++..+
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~ 247 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNT 247 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 46666554433 1 2356677888899999998754
No 200
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=31.67 E-value=56 Score=25.30 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=39.5
Q ss_pred EEEecCChHHHHHHHHHHhCCCEEEEeccCCCccc-ccccCchhhHHHhc-CCCccEEEE
Q 030208 111 ARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQ-SVLQGSVGEYCLHH-CKTAPIIVV 168 (181)
Q Consensus 111 ~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~-~~~~gs~~~~ll~~-~~~~pVlvv 168 (181)
+.+.+-....++++.|++.++.+|+-.+.+..... .-++.......+.. .. +||.+-
T Consensus 23 fNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~-VPValH 81 (323)
T 2isw_A 23 FNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPD-IPICIH 81 (323)
T ss_dssp EECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTT-SCEEEE
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCC-CcEEEE
Confidence 34444478999999999999999998877532221 12334566666766 77 998775
No 201
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=31.35 E-value=1.7e+02 Score=22.19 Aligned_cols=113 Identities=4% Similarity=-0.098 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChH--HHHHHHHHHhCC
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA--KVICKEAERLKP 131 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~--~~I~~~a~~~~~ 131 (181)
...+++.-++.....|..=.++.-..........++..+.++...+.... .+.+-.-+-..+.. -++.+.|++.++
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g--rvpViaGvg~~st~eai~la~~A~~~Ga 119 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKG--RIPVIAGTGANSTREAVALTEAAKSGGA 119 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT--SSCEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEEEeCCCcCHHHHHHHHHHHHHcCC
Confidence 44555555555444453222222112222233345555555554444322 24443222111333 334456788899
Q ss_pred CEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 132 AAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 132 dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
|.+++..........--+=..-+.|+..+. .||++..
T Consensus 120 davlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilYn 156 (314)
T 3qze_A 120 DACLLVTPYYNKPTQEGMYQHFRHIAEAVA-IPQILYN 156 (314)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHHHSC-SCEEEEE
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 999998754332221111123367888888 9999874
No 202
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=31.35 E-value=68 Score=23.50 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=29.8
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLV 75 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~ll 75 (181)
.+-|+++++.+-..+....|..++.+.++-+++=+
T Consensus 134 V~EVIlAtnpTvEGEaTA~YI~~~Lk~~~vkVTRi 168 (228)
T 1vdd_A 134 GMEVILATGTTVEGDATALYLQRLLEPLGAAISRI 168 (228)
T ss_dssp TCEEEECCCSSHHHHHHHHHHHHHHTTSSCEEEEC
T ss_pred CCEEEEeCCCCchHHHHHHHHHHHHHHcCCCEEEe
Confidence 48999999999999999999999998887665543
No 203
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=31.31 E-value=1.7e+02 Score=22.08 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=49.5
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCC-chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec-CC-
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV-QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GD- 117 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~-g~- 117 (181)
.++|+|-++++.+...++=.+.+- ...+++ +..|+... ... .+..+..++.+...-.. .+
T Consensus 89 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~--i~~Visn~p~~~--------------~~~A~~~gIp~~~~~~~~~~r 151 (288)
T 3obi_A 89 RRKVMLLVSQSDHCLADILYRWRV-GDLHMI--PTAIVSNHPRET--------------FSGFDFGDIPFYHFPVNKDTR 151 (288)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHT-TSSCEE--EEEEEESSCGGG--------------SCCTTTTTCCEEECCCCTTTH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHC-CCCCeE--EEEEEcCCChhH--------------HHHHHHcCCCEEEeCCCcccH
Confidence 478999999887777666665442 223344 44455432 210 12234556776542211 12
Q ss_pred --hHHHHHHHHHHhCCCEEEEeccC
Q 030208 118 --AAKVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 118 --~~~~I~~~a~~~~~dliV~g~~~ 140 (181)
..+++++..++.++|++|+..+.
T Consensus 152 ~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 152 RQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 23578899999999999998764
No 204
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=30.99 E-value=74 Score=21.93 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=28.4
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.+.+++.++.+..+...++.+ +.|+..|+++..+.-
T Consensus 113 ~~DvvI~iS~SG~t~~~i~~~-~~ak~~g~~vI~IT~ 148 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQAI-QAAHDREMLVVALTG 148 (199)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHHTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHH-HHHHHCCCEEEEEEC
Confidence 477999999998888887755 788888888766654
No 205
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=30.92 E-value=34 Score=27.56 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=15.4
Q ss_pred CChHHHHHHHHH-HhCCCEEEEeccCC
Q 030208 116 GDAAKVICKEAE-RLKPAAVVIGSRGR 141 (181)
Q Consensus 116 g~~~~~I~~~a~-~~~~dliV~g~~~~ 141 (181)
|+-.+.+.+.++ +.++.+|.+-+.+-
T Consensus 113 GdDi~~v~~~~~~~~~ipVi~v~~~Gf 139 (460)
T 2xdq_A 113 KMDLEGLAPKLEAEIGIPIVVARANGL 139 (460)
T ss_dssp TCCHHHHHHHHHHHHSSCEEEEECCTT
T ss_pred hhCHHHHHHHHhhccCCcEEEEecCCc
Confidence 544555555553 45777777776653
No 206
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=30.77 E-value=76 Score=21.78 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=27.3
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.+.+++.++.+..+...++.+ +.|+..|+++..+.-
T Consensus 109 ~~DvvI~iS~SG~t~~~i~~~-~~ak~~g~~vI~IT~ 144 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVKAV-EAAVTRDMTIVALTG 144 (196)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHHTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHH-HHHHHCCCEEEEEeC
Confidence 377999999998887777655 777778887766644
No 207
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=30.63 E-value=1.4e+02 Score=21.09 Aligned_cols=56 Identities=5% Similarity=0.081 Sum_probs=36.6
Q ss_pred ecCChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 114 VEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 114 ~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
...+..++|.+..+..+---+|+|+..+.....+-.....+.+. ... -||+++=.+
T Consensus 87 vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~i~-~~~-~pvalvFG~ 142 (192)
T 3dcm_X 87 LKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIII-ETE-KPVLILLGT 142 (192)
T ss_dssp EESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHH-HCC-SCEEEEECC
T ss_pred EECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHHHH-hCC-CCEEEEECC
Confidence 45778888888888888888899988775533332333444444 445 788887433
No 208
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=30.63 E-value=93 Score=20.68 Aligned_cols=104 Identities=7% Similarity=-0.040 Sum_probs=56.0
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecC-C
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEG-D 117 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g-~ 117 (181)
+++|.+-+.+... ..++.+|.++.... |-+| +.... ....+++ .|+.++...... .
T Consensus 3 ~~~ialsv~D~dK-~~~v~~a~~~~~ll~Gf~l-----~AT~g---------------Ta~~L~e~~Gl~v~~v~k~~~e 61 (134)
T 2xw6_A 3 MRALALIAHDAKK-EEMVAFCQRHREVLARFPL-----VATGT---------------TGRRIEEATGLTVEKLLSGPLG 61 (134)
T ss_dssp SCEEEEEECGGGH-HHHHHHHHHTHHHHTTSCE-----EECHH---------------HHHHHHHHHCCCCEECSCGGGT
T ss_pred ccEEEEEEecccH-HHHHHHHHHHHHHhCCCEE-----EEccH---------------HHHHHHHhhCceEEEEEecCCC
Confidence 3667777766543 46777777776553 2222 22110 1112222 467776533211 2
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEE
Q 030208 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (181)
-...|.+..++.++|+||--....+.-.+..-|...++..-... +|++
T Consensus 62 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~-IP~~ 109 (134)
T 2xw6_A 62 GDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHG-VPLA 109 (134)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHT-CCEE
T ss_pred CcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcC-CCeE
Confidence 34579999999999999998762111111122444555555555 6654
No 209
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=30.53 E-value=1e+02 Score=19.23 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHh--cCCCccEEEEcCCCC
Q 030208 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGKGT 173 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~~~ 173 (181)
.++.++.+++..+|+|++...-.. ..++ ...+.+-. ..+++||+++-....
T Consensus 40 ~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~~~ 92 (142)
T 3cg4_A 40 GGQCIDLLKKGFSGVVLLDIMMPG-MDGW---DTIRAILDNSLEQGIAIVMLTAKNA 92 (142)
T ss_dssp HHHHHHHHHTCCCEEEEEESCCSS-SCHH---HHHHHHHHTTCCTTEEEEEEECTTC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCCEEEEECCCC
Confidence 345556666777899988865322 1111 23344444 233388888865443
No 210
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=30.49 E-value=48 Score=25.50 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=37.6
Q ss_pred EEecCChHHHHHHHHHHhCCCEEEEeccCCCcc-cccccCchhhHHHhc-CCCccEEEE
Q 030208 112 RIVEGDAAKVICKEAERLKPAAVVIGSRGRGLI-QSVLQGSVGEYCLHH-CKTAPIIVV 168 (181)
Q Consensus 112 ~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~-~~~~~gs~~~~ll~~-~~~~pVlvv 168 (181)
.+.+-....++++.|++.++.+|+-.+.+.... ..-++.......... .. +||.+-
T Consensus 23 Nv~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~-VPValH 80 (307)
T 3n9r_A 23 NFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH-IPVALH 80 (307)
T ss_dssp ECSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTT-SCEEEE
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCC-CcEEEE
Confidence 444447899999999999999999877653221 112344555556665 67 998774
No 211
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=30.33 E-value=45 Score=25.63 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=39.6
Q ss_pred EEEecCChHHHHHHHHHHhCCCEEEEeccCCCcccc-cccCchhhHHHhcCCCccEEEE
Q 030208 111 ARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVV 168 (181)
Q Consensus 111 ~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv 168 (181)
+.+.+-....++++.|++.++.+|+-.+.+.....+ -++.......+. .. +||.+-
T Consensus 22 fNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~-~~-VPValH 78 (305)
T 1rvg_A 22 FNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE-AR-VPVAVH 78 (305)
T ss_dssp EECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH-CS-SCEEEE
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh-CC-CcEEEE
Confidence 344444789999999999999999988765322211 234566677777 77 998875
No 212
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=30.29 E-value=50 Score=24.42 Aligned_cols=47 Identities=15% Similarity=0.027 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEecc
Q 030208 91 QGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 91 ~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 139 (181)
-+.++++. +.....+.++.+.+..| +..+-+..+.+.++|.+|+|+.
T Consensus 179 l~KI~~lr-~~~~~~~~~~~I~VDGG-I~~~ti~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 179 LDKAKEIS-KWISSTDRDILLEIDGG-VNPYNIAEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHH-HHHHHHTSCCEEEEESS-CCTTTHHHHHTTTCCEEEESHH
T ss_pred HHHHHHHH-HHHHhcCCCeeEEEECC-cCHHHHHHHHHcCCCEEEEehH
Confidence 34444432 33333345555555555 2233455667779999999964
No 213
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=30.04 E-value=1.3e+02 Score=20.45 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=23.7
Q ss_pred CeEEEEE-cCChhhHHHHHHHHHHhcc-CCCEEEEEEEec
Q 030208 42 RDILIAV-DHGPNSKHAFDWALIHLCR-LADTIHLVHAVS 79 (181)
Q Consensus 42 ~~Ilv~v-d~s~~s~~a~~~a~~la~~-~~a~l~llhV~~ 79 (181)
.+|++-. +.+-++..+++...+-+.. .+.++.++.+.+
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~ 44 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDE 44 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTT
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhh
Confidence 3455443 3335567777777777665 667777777644
No 214
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=29.98 E-value=1.4e+02 Score=20.83 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=11.8
Q ss_pred HHHHHHHHHhccCCCEEEEEEEe
Q 030208 56 HAFDWALIHLCRLADTIHLVHAV 78 (181)
Q Consensus 56 ~a~~~a~~la~~~~a~l~llhV~ 78 (181)
.+++.+.+.++..+.++.++.+.
T Consensus 34 ~l~~~~~~~~~~~g~~v~~~dL~ 56 (204)
T 2amj_A 34 TLTEVADGTLRDLGHDVRIVRAD 56 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEEeCC
Confidence 44455555444445555555553
No 215
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=29.72 E-value=41 Score=26.77 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCCCC
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKGTS 174 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (181)
.-.+.+.+++++.++|-||.-....-....+....+-+.+.+... +|+|.+-..+..
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~g-IP~l~ie~D~~~ 377 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETG-LPYAGFDGDQAD 377 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHC-CCEEEEEECSSC
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcC-CCEEEEeccCCC
Confidence 457888899999999999988776555444333334445667788 999999765553
No 216
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=29.48 E-value=71 Score=25.98 Aligned_cols=52 Identities=10% Similarity=-0.065 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCC----cccc---cccCchhhHHHhcCCCccE--EEEc
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGRG----LIQS---VLQGSVGEYCLHHCKTAPI--IVVP 169 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~~----~~~~---~~~gs~~~~ll~~~~~~pV--lvv~ 169 (181)
...+++++.|++.++-+|+-.+.+.- +..+ ..+...+..++.+.. +|| +++.
T Consensus 32 e~i~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~-vPv~pV~Lh 92 (450)
T 3txv_A 32 LVIEAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIE-FPREKILLG 92 (450)
T ss_dssp HHHHHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTT-CCGGGEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcC-cCcccEEEE
Confidence 67899999999999999988876642 2221 235667788888888 996 4443
No 217
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=29.45 E-value=93 Score=23.07 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=26.4
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
.+|+|+++ ...|..++..+.++ +.++.++|+..
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~----~~~i~vv~iDt 87 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL----NRNVKVFSLDT 87 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH----CTTCCEEEECC
T ss_pred CCEEEEee-cHHHHHHHHHHHHh----CCCceEEEEeC
Confidence 67999999 99998888887665 44678888854
No 218
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=29.45 E-value=1.8e+02 Score=21.88 Aligned_cols=110 Identities=13% Similarity=-0.013 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC--chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecC--ChHHH--HHHHHH
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV--QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--DAAKV--ICKEAE 127 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g--~~~~~--I~~~a~ 127 (181)
...+++.-++.....|.. -+.+.-.. ......++..+.++...+.... .+.+- +-.| +..+. +.+.|+
T Consensus 30 D~~~l~~lv~~li~~Gv~--Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g--rvpVi--aGvg~~~t~~ai~la~~A~ 103 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGID--GLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG--KIKLI--AHVGCVSTAESQQLAASAK 103 (303)
T ss_dssp CHHHHHHHHHHHHHTTCS--EEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--TSEEE--EECCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC--EEEECeeccChhhCCHHHHHHHHHHHHHHhCC--CCcEE--EecCCCCHHHHHHHHHHHH
Confidence 445555555554444532 23333322 2233445555555554443322 24433 2233 33333 456678
Q ss_pred HhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 128 RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 128 ~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+.++|.+++..........--+=..-+.|+..+++.||++.-
T Consensus 104 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 104 RYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp HHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 889999988875433222110111223455554337888864
No 219
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=29.10 E-value=87 Score=19.27 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=11.1
Q ss_pred HHHHHHHHhCCCEEEEecc
Q 030208 121 VICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 121 ~I~~~a~~~~~dliV~g~~ 139 (181)
+.++.+++..+|+|++...
T Consensus 38 ~a~~~l~~~~~dlvi~d~~ 56 (133)
T 3nhm_A 38 SGLQQALAHPPDVLISDVN 56 (133)
T ss_dssp HHHHHHHHSCCSEEEECSS
T ss_pred HHHHHHhcCCCCEEEEeCC
Confidence 3344455556777777654
No 220
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=29.04 E-value=2.2e+02 Score=22.75 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHhccCC-CEEEEEEEec
Q 030208 52 PNSKHAFDWALIHLCRLA-DTIHLVHAVS 79 (181)
Q Consensus 52 ~~s~~a~~~a~~la~~~~-a~l~llhV~~ 79 (181)
..+++.+++|.++|...+ .+++++|=.+
T Consensus 197 ~~~eRiar~AFe~A~~r~rkkVt~v~KaN 225 (412)
T 2iv0_A 197 FATKRLVRMAIRYAIENNRKSVTLVHKGN 225 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECcc
Confidence 678999999999998775 4799998533
No 221
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=28.77 E-value=1e+02 Score=18.83 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=11.1
Q ss_pred HHHHHHHHhCCCEEEEecc
Q 030208 121 VICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 121 ~I~~~a~~~~~dliV~g~~ 139 (181)
+.++..+...+|+|++...
T Consensus 42 ~a~~~l~~~~~dlvi~d~~ 60 (130)
T 3eod_A 42 DALELLGGFTPDLMICDIA 60 (130)
T ss_dssp HHHHHHTTCCCSEEEECCC
T ss_pred HHHHHHhcCCCCEEEEecC
Confidence 3444455556777777654
No 222
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=28.52 E-value=1.3e+02 Score=24.79 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=44.8
Q ss_pred ChhhHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHHh
Q 030208 51 GPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERL 129 (181)
Q Consensus 51 s~~s~~a~~~a~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~ 129 (181)
...+++.+++|.++|+.. ..+|+++|=.+.- ........+..++..+ +-.++.++..+ ..+....++.-= .
T Consensus 164 r~~ieRIar~AFe~A~~r~rkkVT~V~KaNVl--k~sdGlfr~v~~eVa~---eYPdI~~e~~~-VD~~amqLV~~P--~ 235 (496)
T 2d1c_A 164 WKGSEKIVRFAFELARAEGRKKVHCATKSNIM--KLAEGTLKRAFEQVAQ---EYPDIEAVHII-VDNAAHQLVKRP--E 235 (496)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTTTC--TTHHHHHHHHHHHHHT---TCTTSEEEEEE-HHHHHHHHHHCG--G
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCCch--hhHHHHHHHHHHHHHH---HCCCceEEEEe-HHHHHHHHhhCc--C
Confidence 377899999999999987 4688888854421 1112222333333211 12345555433 344444444433 3
Q ss_pred CCCEEEEec
Q 030208 130 KPAAVVIGS 138 (181)
Q Consensus 130 ~~dliV~g~ 138 (181)
++|.||...
T Consensus 236 ~FDVIVt~N 244 (496)
T 2d1c_A 236 QFEVIVTTN 244 (496)
T ss_dssp GCSEEEECH
T ss_pred cceEEEECC
Confidence 488777764
No 223
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=28.41 E-value=1.1e+02 Score=18.95 Aligned_cols=48 Identities=8% Similarity=-0.014 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
++.++..++..+|+|++...-.. ..++ ...+++-+..+.+|++++-..
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 41 EEGERLFGLHAPDVIITDIRMPK-LGGL---EMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCcEEEEecC
Confidence 33444555567888888765321 1111 223344444444777776543
No 224
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=28.33 E-value=2.3e+02 Score=22.68 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=24.5
Q ss_pred ce-EEEEEecC-C--hHHHHHHHHHHhCCCEEEEeccCC
Q 030208 107 VR-TKARIVEG-D--AAKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 107 i~-~~~~~~~g-~--~~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
+. +...+.-+ + -...|.+.+++.++|.|++..+..
T Consensus 269 ~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~ 307 (415)
T 3i65_A 269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTT 307 (415)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBS
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCc
Confidence 55 55555554 2 256777888899999999887643
No 225
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=28.31 E-value=1.2e+02 Score=19.62 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=23.2
Q ss_pred HHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHh--cCCCccEEEEcCCC
Q 030208 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGKG 172 (181)
Q Consensus 122 I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~~ 172 (181)
-++.+++..+|+|++--. -.+..++ .+.++|=. ..+++||+++-...
T Consensus 49 al~~~~~~~~DlillD~~-MP~mdG~---el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 49 ALPMLKKGDFDFVVTDWN-MPGMQGI---DLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHHHCCSEEEEESC-CSSSCHH---HHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHHhCCCCEEEEcCC-CCCCCHH---HHHHHHHhCCCCCCCeEEEEECCC
Confidence 344556667888888754 2222221 12222211 12227887775543
No 226
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=27.94 E-value=1.2e+02 Score=23.90 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=44.5
Q ss_pred CChhhHHHHHHHHHHhccC-------------CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHH---h-hhcCceEEEE
Q 030208 50 HGPNSKHAFDWALIHLCRL-------------ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEA---M-DVAMVRTKAR 112 (181)
Q Consensus 50 ~s~~s~~a~~~a~~la~~~-------------~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~---~-~~~~i~~~~~ 112 (181)
....+++.+++|.++|+.. ..+|+++|=.+-- .. .+...++..++. . +-.++.++..
T Consensus 160 Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl--~~----s~glf~~~~~ev~~~a~eypdV~~~~~ 233 (366)
T 3ty4_A 160 SEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVM--SV----TDGLFRESCRHAQSLDPSYASINVDEQ 233 (366)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTC--TT----HHHHHHHHHHHHGGGCGGGTTSEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcch--Hh----HHHHHHHHHHHHHHhHhhCCCceEEee
Confidence 3467889999999999876 5688888853321 11 122223333333 1 2234666543
Q ss_pred EecCChHHHHHHHHHHhCCCEEEEec
Q 030208 113 IVEGDAAKVICKEAERLKPAAVVIGS 138 (181)
Q Consensus 113 ~~~g~~~~~I~~~a~~~~~dliV~g~ 138 (181)
+ ..+....++.-=+ ++|.||...
T Consensus 234 ~-VD~~am~lv~~P~--~FDViVt~N 256 (366)
T 3ty4_A 234 I-VDSMVYRLFREPE--CFDVVVAPN 256 (366)
T ss_dssp E-HHHHHHHHHHCGG--GCSEEEECH
T ss_pred e-HHHHHHHHHhCcc--cCcEEEECc
Confidence 3 3444544444333 488777654
No 227
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=27.84 E-value=1.7e+02 Score=21.12 Aligned_cols=22 Identities=5% Similarity=0.027 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCEEEEeccC
Q 030208 119 AKVICKEAERLKPAAVVIGSRG 140 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~ 140 (181)
.+++++..++.++|++|+...+
T Consensus 90 ~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 90 DAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp HHHHHHHHHHTTCSEEEESSCC
T ss_pred cHHHHHHHHhcCCCEEEEcChh
Confidence 4678899999999999998764
No 228
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=27.83 E-value=1.9e+02 Score=21.68 Aligned_cols=84 Identities=10% Similarity=0.027 Sum_probs=50.0
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEe-cCC--
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV-EGD-- 117 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~-~g~-- 117 (181)
.++|+|-++++.+...++=.+.+- ...++++.++-..... . .. ..+..++++...-. ..+
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~--~----------~~----~A~~~gIp~~~~~~~~~~r~ 152 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAVVSNHPD--L----------EP----LAHWHKIPYYHFALDPKDKP 152 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEEEESSST--T----------HH----HHHHTTCCEEECCCBTTBHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEEEeCcHH--H----------HH----HHHHcCCCEEEeCCCcCCHH
Confidence 468999999887766666655432 2335565554443321 0 11 12344677654211 122
Q ss_pred -hHHHHHHHHHHhCCCEEEEeccCC
Q 030208 118 -AAKVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~g~~~~ 141 (181)
..+++++..++.++|++|+..+.+
T Consensus 153 ~~~~~~~~~l~~~~~Dlivla~y~~ 177 (286)
T 3n0v_A 153 GQERKVLQVIEETGAELVILARYMQ 177 (286)
T ss_dssp HHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred HHHHHHHHHHHhcCCCEEEeccccc
Confidence 235789999999999999997643
No 229
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=27.70 E-value=1.1e+02 Score=19.00 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=18.6
Q ss_pred hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 129 LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 129 ~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
.++|+|+.+..-...+.++ ++...... +||.++.+
T Consensus 50 ~~~D~Ii~t~~l~~~~~~~------~~~~~~~~-~pv~~I~~ 84 (109)
T 2l2q_A 50 DRFDVVLLAPQSRFNKKRL------EEITKPKG-IPIEIINT 84 (109)
T ss_dssp TTCSEEEECSCCSSHHHHH------HHHHHHHT-CCEEECCH
T ss_pred CCCCEEEECCccHHHHHHH------HHHhcccC-CCEEEECh
Confidence 3589888886533222211 23333345 77777654
No 230
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.52 E-value=1.5e+02 Score=20.19 Aligned_cols=40 Identities=8% Similarity=-0.133 Sum_probs=21.6
Q ss_pred HHHHhhhcCceEEEEEecCChHHHHHHHHH----HhCCCEEEEe
Q 030208 98 AIEAMDVAMVRTKARIVEGDAAKVICKEAE----RLKPAAVVIG 137 (181)
Q Consensus 98 ~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~----~~~~dliV~g 137 (181)
+.+.+.+.|+++......+|-.+.|.+..+ ..++|+||..
T Consensus 45 L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 45 IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 334445556666655555654444444332 3457887764
No 231
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=27.47 E-value=1.9e+02 Score=21.53 Aligned_cols=47 Identities=9% Similarity=-0.077 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCEEEEeccCCCc-ccccccCchhhHHHhcCCCccEEEEc
Q 030208 122 ICKEAERLKPAAVVIGSRGRGL-IQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 122 I~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+.+.|++.++|.+++-...... ...--+=..-+.|+..++ .||++..
T Consensus 83 la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~-lPiilYn 130 (288)
T 2nuw_A 83 LVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISS-HSLYIYN 130 (288)
T ss_dssp HHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCC-SCEEEEE
T ss_pred HHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcC-CCEEEEE
Confidence 4556788899999888764433 221111122257788888 9999874
No 232
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=27.29 E-value=2e+02 Score=21.55 Aligned_cols=47 Identities=4% Similarity=-0.117 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCEEEEeccCCCc-ccccccCchhhHHHhcCCCccEEEEc
Q 030208 122 ICKEAERLKPAAVVIGSRGRGL-IQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 122 I~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
+.+.|++.++|.+++....... ...--+=..-+.|+..++ .||++..
T Consensus 83 la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~-lPiilYn 130 (293)
T 1w3i_A 83 LAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSP-HPVYLYN 130 (293)
T ss_dssp HHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCS-SCEEEEE
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCC-CCEEEEE
Confidence 3455677899999888764433 221111122257788888 9999874
No 233
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=27.18 E-value=1.1e+02 Score=18.45 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhc--CCCccEEEE
Q 030208 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHH--CKTAPIIVV 168 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~--~~~~pVlvv 168 (181)
++.++..++..+|++++...-.+...++ ...+.+-+. .+++||+++
T Consensus 39 ~~a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 4444555666788888876532121111 233444443 233888887
No 234
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=26.99 E-value=98 Score=20.95 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=24.5
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.+.+++.++.+..+...++.+ +.|+..|+++..+.-
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~~~-~~ak~~g~~vi~iT~ 145 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLEAL-KKAKELNMLCLGLSG 145 (188)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHHTTCEEEEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHH-HHHHHCCCEEEEEeC
Confidence 367888888887776666544 666667777666654
No 235
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=26.95 E-value=1.2e+02 Score=18.87 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHh--cCCCccEEEEcCC
Q 030208 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGK 171 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~ 171 (181)
.++.++.+++..+|+|++...-.. ..++ ...+.+-. ..+++||+++-..
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDLNLPD-QDGV---SLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHTSGGGTTCEEEEECTT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCcccCCCCEEEEecC
Confidence 344555667778999999865321 1111 22333333 2223888888643
No 236
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=26.93 E-value=1.9e+02 Score=21.35 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEE
Q 030208 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (181)
..+.|.++.++.+.|+|+.-........+...+..+...++... .|++..
T Consensus 136 l~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~-~~~~~~ 185 (273)
T 3dff_A 136 VADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKN-VPVRLW 185 (273)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHT-CCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcC-CCEEEe
Confidence 34566778899999999985443344445556777777777777 777765
No 237
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=26.87 E-value=1.3e+02 Score=21.33 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
..+.++.+.+.++|.|++......+...-+.-....++.+... +||++.-
T Consensus 156 ~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~-~pvia~G 205 (253)
T 1h5y_A 156 AVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVR-IPVIASG 205 (253)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCS-SCEEEES
T ss_pred HHHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcC-CCEEEeC
Confidence 3455677778899999887665544322121234466777777 9998764
No 238
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=26.82 E-value=1.3e+02 Score=23.99 Aligned_cols=28 Identities=0% Similarity=-0.101 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 52 PNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 52 ~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
..+++.+++|.++|...+.+|+++|=..
T Consensus 185 ~~~eRiar~AF~~A~~~~~~vt~v~KaN 212 (402)
T 4aoy_A 185 KSIRSFARACFNYALDMNQDLWFSTKDT 212 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 6788999999999988788888888533
No 239
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=26.77 E-value=90 Score=22.66 Aligned_cols=48 Identities=6% Similarity=-0.002 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEEecCChHHHHHHHHHHhCCCEEEEe-cc
Q 030208 90 SQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIG-SR 139 (181)
Q Consensus 90 ~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~I~~~a~~~~~dliV~g-~~ 139 (181)
..+.++++ ++.....+..+.+.+..|--.+.+ ..+.+.++|.+|+| +.
T Consensus 150 ~l~kI~~l-r~~~~~~~~~~~I~VdGGI~~~~~-~~~~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 150 MLDKLAEL-KAWREREGLEYEIEVDGSCNQATY-EKLMAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHH-HHHHHHHTCCCEEEEESCCSTTTH-HHHHHHTCCEEEECTTT
T ss_pred HHHHHHHH-HHHHhccCCCceEEEECCcCHHHH-HHHHHcCCCEEEEccHH
Confidence 33444443 233333344455555445223333 44455589999999 65
No 240
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=26.48 E-value=89 Score=21.86 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=25.2
Q ss_pred CCCeEEEEEcC-C--hhhHHHHHHHHHHhccCCCEEEEEEEecC
Q 030208 40 RGRDILIAVDH-G--PNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (181)
Q Consensus 40 ~~~~Ilv~vd~-s--~~s~~a~~~a~~la~~~~a~l~llhV~~~ 80 (181)
|.|+|++=+.. . ..+..+++++.+++.. +.++.++.+.+-
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~~-~~~~~~idl~dL 43 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAEG-RLEFHLLHIGDL 43 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHTT-TEEEEECCGGGS
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhccC-CCEEEEEecccC
Confidence 45777654432 2 3456788888887754 678888876543
No 241
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=26.34 E-value=1.5e+02 Score=23.85 Aligned_cols=29 Identities=3% Similarity=-0.210 Sum_probs=23.7
Q ss_pred ChhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 51 GPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 51 s~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
...+++.+++|.++|+..+.+|+++|=.+
T Consensus 207 ~~~~eRiar~AFe~A~~r~kkVt~v~KaN 235 (427)
T 3us8_A 207 DESITEFARASFNYGLQRKVPVYLSTKNT 235 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECcc
Confidence 36789999999999988888888888533
No 242
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=26.15 E-value=1.5e+02 Score=20.75 Aligned_cols=102 Identities=8% Similarity=0.032 Sum_probs=57.2
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceEEEEEecCC--
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGD-- 117 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~g~-- 117 (181)
.+|++-+.+... ..++.+|.++.... |-+| +.... ....+++ .|+.++... .+.
T Consensus 28 g~V~lsv~D~dK-~~lv~~ak~~~~lL~Gf~L-----~AT~g---------------Ta~~L~e~~Gl~v~~v~-k~~eG 85 (178)
T 1vmd_A 28 KRIALIAHDRRK-RDLLEWVSFNLGTLSKHEL-----YATGT---------------TGALLQEKLGLKVHRLK-SGPLG 85 (178)
T ss_dssp CEEEEEECGGGH-HHHHHHHHHSHHHHTTSEE-----EECHH---------------HHHHHHHHHCCCCEECS-CGGGT
T ss_pred CEEEEEEehhhH-HHHHHHHHHHHHHhcCCEE-----EEchH---------------HHHHHHHHhCceeEEEe-ecCCC
Confidence 678877766543 56778887776553 3322 22211 1122222 567776432 221
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEE
Q 030208 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (181)
-...|.+..++.++|+||--....+.-.+..-|...++++-... +|++
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~-IP~~ 133 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYN-IPVA 133 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTT-CCEE
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcC-CCEE
Confidence 24579999999999999998762111111122444555555555 6664
No 243
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=26.05 E-value=1e+02 Score=23.37 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=29.6
Q ss_pred HHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEE-Ec
Q 030208 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIV-VP 169 (181)
Q Consensus 122 I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlv-v~ 169 (181)
+++.+.+.+.|.|++|+.+-+.+.. -+..+...+-+.+. .||++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~-~~~~~v~~ik~~~~-lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFES-HMEPYVAAVKAATP-LPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHH-HHHHHHHHHHHHCS-SCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchH-HHHHHHHHHHHhCC-CCEEEECC
Confidence 5566667789999999333331222 12445555556588 99999 88
No 244
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.92 E-value=1.2e+02 Score=18.80 Aligned_cols=47 Identities=11% Similarity=-0.055 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
++.++..++..+|+|++.. - .+..++ ...+.+-...+++||+++-..
T Consensus 38 ~~a~~~l~~~~~dlvi~d~-~-~~~~g~---~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 38 QEAFTFLRREKIDLVFVDV-F-EGEESL---NLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHTTSCCSEEEEEC-T-TTHHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHhccCCCEEEEeC-C-CCCcHH---HHHHHHHHHCCCCCEEEEECC
Confidence 3444555556778877775 2 221111 222333333333777776443
No 245
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=25.85 E-value=1.6e+02 Score=20.20 Aligned_cols=38 Identities=11% Similarity=-0.027 Sum_probs=22.9
Q ss_pred CCeEEEEEcCC---hhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 41 GRDILIAVDHG---PNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 41 ~~~Ilv~vd~s---~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
+++||+-.... ..+..+++++.+.+. .+.++.++.+.+
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~ 42 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDR 42 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSS
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCcc
Confidence 35655544322 345677777777665 467888877754
No 246
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=25.59 E-value=1.1e+02 Score=20.75 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=27.1
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.+.+++.++.+..+...++.+ +.++..|+++..+.-
T Consensus 79 ~~d~vI~iS~sG~t~~~~~~~-~~ak~~g~~vi~IT~ 114 (186)
T 1m3s_A 79 EGDLVIIGSGSGETKSLIHTA-AKAKSLHGIVAALTI 114 (186)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHHTTCEEEEEES
T ss_pred CCCEEEEEcCCCCcHHHHHHH-HHHHHCCCEEEEEEC
Confidence 477999999988887766644 777888888766654
No 247
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=25.41 E-value=1e+02 Score=20.91 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=23.5
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
+.+++.++.+..+...++.+ +.|+..|+++..+.-
T Consensus 88 ~d~~i~iS~sG~t~~~~~~~-~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 88 TDLMIGVSVWRYLRDTVAAL-AGAAERGVPTMALTD 122 (187)
T ss_dssp TEEEEEECCSSCCHHHHHHH-HHHHHTTCCEEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHH-HHHHHCCCCEEEEeC
Confidence 66788888777776665554 566666776666654
No 248
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=25.33 E-value=1.1e+02 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEE
Q 030208 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (181)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (181)
|...+...+....+++|.||+-...++. .+.+.+++. +||+
T Consensus 78 gEsl~DTarvLs~~~~D~iviR~~~~~~---------~~~la~~~~-vPVI 118 (304)
T 3r7f_A 78 GETLYDTIRTLESIGVDVCVIRHSEDEY---------YEELVSQVN-IPIL 118 (304)
T ss_dssp SSCHHHHHHHHHHHTCCEEEEECSSTTC---------HHHHHHHCS-SCEE
T ss_pred CCCHHHHHHHHHHhcCCEEEEecCChhH---------HHHHHHhCC-CCEE
Confidence 5555666667777788999998764433 356778888 9965
No 249
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=24.99 E-value=1e+02 Score=20.75 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=21.8
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.+.+++.++.+..+...++.+ +.|+..|+++.++.-
T Consensus 96 ~~d~vI~iS~sG~t~~~~~~~-~~ak~~g~~vi~IT~ 131 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITALI-PVLKRLHVPLICITG 131 (183)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHTTTCCEEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHH-HHHHHCCCCEEEEEC
Confidence 356777777776666655544 555666666555543
No 250
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=24.82 E-value=1.6e+02 Score=23.47 Aligned_cols=29 Identities=3% Similarity=-0.244 Sum_probs=23.9
Q ss_pred ChhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 51 GPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 51 s~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
...+++.+++|.++|+..+.+|+++|=.+
T Consensus 183 ~~~~eRiar~AFe~A~~r~~kVt~v~KaN 211 (402)
T 2uxq_A 183 VASIGHFARACFEYSLDQKIDCWFATKDT 211 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 37789999999999988777888888544
No 251
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=24.78 E-value=1.1e+02 Score=20.84 Aligned_cols=36 Identities=14% Similarity=-0.043 Sum_probs=25.1
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.+.+++.++.+..+...++.+ +.|+..|+++..+.-
T Consensus 116 ~~d~vI~iS~SG~t~~~~~~~-~~ak~~g~~vI~IT~ 151 (198)
T 2xbl_A 116 EGDVLIGYSTSGKSPNILAAF-REAKAKGMTCVGFTG 151 (198)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHHTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHH-HHHHHCCCeEEEEEC
Confidence 367888888887776666544 667777877766654
No 252
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=24.75 E-value=1.4e+02 Score=18.92 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=8.8
Q ss_pred HHHHHHhCCCEEEEecc
Q 030208 123 CKEAERLKPAAVVIGSR 139 (181)
Q Consensus 123 ~~~a~~~~~dliV~g~~ 139 (181)
++.+++..+|+|++...
T Consensus 59 l~~l~~~~~dlii~D~~ 75 (150)
T 4e7p_A 59 IQLLEKESVDIAILDVE 75 (150)
T ss_dssp HHHHTTSCCSEEEECSS
T ss_pred HHHhhccCCCEEEEeCC
Confidence 34444445666666543
No 253
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=24.73 E-value=1.7e+02 Score=20.03 Aligned_cols=93 Identities=10% Similarity=0.003 Sum_probs=45.5
Q ss_pred CCeEEEEEcCC---hhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEE-EEecC
Q 030208 41 GRDILIAVDHG---PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKA-RIVEG 116 (181)
Q Consensus 41 ~~~Ilv~vd~s---~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~-~~~~g 116 (181)
++..+++-.|. .+-...++.|.++. .++.++ +...+... ..-..++.++- .+...+.. -.++. ...++
T Consensus 2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~----D~viv~-v~~~~~K~-~~~~~~~R~~m-l~~a~~~~-~~v~v~~~~e~ 73 (171)
T 3nd5_A 2 RKIALFPGSFDPMTNGHLNLIERSAKLF----DEVIIG-VFINTSKQ-TLFTPEEKKYL-IEEATKEM-PNVRVIMQETQ 73 (171)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHTTC----SEEEEE-EEC-------CCCHHHHHHH-HHHHHTTC-TTEEEEEECSS
T ss_pred CeEEEEEEEccccCHHHHHHHHHHHHHC----CCeEEE-EecCCCCC-CCCCHHHHHHH-HHHHHccC-CCEEEeeCCCC
Confidence 46667776666 44556666666554 466555 33222111 11112223222 22222221 12332 22333
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCCccc
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGRGLIQ 145 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~ 145 (181)
...+++++.+++.+|+|.+.-+.++
T Consensus 74 ----~tvd~~~~l~~~~~i~G~~~~~d~~ 98 (171)
T 3nd5_A 74 ----LTVESAKSLGANFLIRGIRNVKDYE 98 (171)
T ss_dssp ----CHHHHHHHHTCCEEEEEECSHHHHH
T ss_pred ----cHHHHHHHCCCCEEEECCCchhhhH
Confidence 3567778889999999976655544
No 254
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=24.64 E-value=2.7e+02 Score=22.32 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=23.7
Q ss_pred cCChhhHHHHHHHHHHhccC-CCEEEEEEE
Q 030208 49 DHGPNSKHAFDWALIHLCRL-ADTIHLVHA 77 (181)
Q Consensus 49 d~s~~s~~a~~~a~~la~~~-~a~l~llhV 77 (181)
-....+++.+++|.++|... ..+|+++|=
T Consensus 192 ~T~~~~eRiar~AFe~A~~r~rkkVt~v~K 221 (423)
T 1hqs_A 192 VSEEGTSRLVRAAIDYAIEHGRKSVTLVHK 221 (423)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred EcHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 34467999999999999876 568999994
No 255
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=24.48 E-value=43 Score=26.77 Aligned_cols=29 Identities=3% Similarity=-0.157 Sum_probs=24.1
Q ss_pred ChhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 51 GPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 51 s~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
...+++.+++|.++|+..+.+|+++|=.+
T Consensus 182 ~~~~eRiar~AFe~A~~r~~kVt~v~KaN 210 (399)
T 1zor_A 182 EKSIRSFAQSCINYAISEKVDIWFATKDT 210 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEECcc
Confidence 37789999999999988777888888544
No 256
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=24.04 E-value=1.7e+02 Score=23.59 Aligned_cols=29 Identities=3% Similarity=-0.160 Sum_probs=24.0
Q ss_pred ChhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 51 GPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 51 s~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
...+++.+++|.++|+..+.+|+++|=.+
T Consensus 202 ~~~ieRIar~AFe~A~~r~~kVt~v~KaN 230 (427)
T 2qfy_A 202 DESIEGFAHSSFKLAIDKKLNLFLSTKNT 230 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEECCc
Confidence 37889999999999988777888888544
No 257
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=24.02 E-value=94 Score=21.78 Aligned_cols=23 Identities=4% Similarity=-0.093 Sum_probs=14.5
Q ss_pred HHHHHHHHhccCCCEEEEEEEec
Q 030208 57 AFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 57 a~~~a~~la~~~~a~l~llhV~~ 79 (181)
..+...+-++..+.++.++.+.+
T Consensus 18 l~~~l~~~~~~~g~ev~~~dL~~ 40 (192)
T 3f2v_A 18 VHKHWSDAVRQHTDRFTVHELYA 40 (192)
T ss_dssp HHHHHHHHHTTCTTTEEEEEHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEchh
Confidence 44444455556677788888755
No 258
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=23.75 E-value=99 Score=21.47 Aligned_cols=37 Identities=8% Similarity=0.197 Sum_probs=28.7
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEe
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV 78 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~ 78 (181)
.+.+++.++.+..+...++.+ +.|+..|+++.++.-.
T Consensus 89 ~~DvvI~iS~SG~t~~~i~~~-~~ak~~g~~vI~IT~~ 125 (200)
T 1vim_A 89 DQDVLVGISGSGETTSVVNIS-KKAKDIGSKLVAVTGK 125 (200)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHHHTCEEEEEESC
T ss_pred CCCEEEEEeCCCCcHHHHHHH-HHHHHCCCeEEEEECC
Confidence 477999999998887777665 6777778888777654
No 259
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=23.67 E-value=1.5e+02 Score=21.27 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEE
Q 030208 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (181)
Q Consensus 121 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (181)
.+.+..++.++|.|.+......+......-...+++.+... +||++.
T Consensus 39 ~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~-ipvi~~ 85 (247)
T 3tdn_A 39 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTT-LPIIAS 85 (247)
T ss_dssp HHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCC-SCEEEE
T ss_pred HHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCC-CCEEEe
Confidence 34444444555555544332221111111123345555555 666654
No 260
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=23.61 E-value=1.1e+02 Score=20.60 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=27.0
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.+.+++.++.+..+...++.+ +.|+..|+++..+.-
T Consensus 82 ~~d~vi~iS~sG~t~~~~~~~-~~ak~~g~~vi~IT~ 117 (180)
T 1jeo_A 82 KDDLLILISGSGRTESVLTVA-KKAKNINNNIIAIVC 117 (180)
T ss_dssp TTCEEEEEESSSCCHHHHHHH-HHHHTTCSCEEEEES
T ss_pred CCCEEEEEeCCCCcHHHHHHH-HHHHHCCCcEEEEeC
Confidence 477999999998887776655 777777887766654
No 261
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=23.56 E-value=1.3e+02 Score=24.22 Aligned_cols=47 Identities=0% Similarity=-0.241 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCCc----ccc---cccCchhhHHHhcCCCcc
Q 030208 117 DAAKVICKEAERLKPAAVVIGSRGRGL----IQS---VLQGSVGEYCLHHCKTAP 164 (181)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~g~~~~~~----~~~---~~~gs~~~~ll~~~~~~p 164 (181)
...+++++.|++.++-+|+-.+.+.-. ..+ ..+...+..++.+.. +|
T Consensus 25 e~i~Ail~aAee~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~-vP 78 (420)
T 2fiq_A 25 LVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVG-FA 78 (420)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHT-CC
T ss_pred HHHHHHHHHHHHcCCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcC-cC
Confidence 688999999999999999998876543 211 223467788888888 99
No 262
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=23.52 E-value=2.4e+02 Score=21.19 Aligned_cols=106 Identities=10% Similarity=0.037 Sum_probs=53.5
Q ss_pred eEEEEEcCChhhHHHHHHHHHHhccCC---CEEEEEEEecCC-chhhHHHHHHHHHHHHHHHHhhhcCceE-EEEEecC-
Q 030208 43 DILIAVDHGPNSKHAFDWALIHLCRLA---DTIHLVHAVSSV-QNQIVYDMSQGLMEKLAIEAMDVAMVRT-KARIVEG- 116 (181)
Q Consensus 43 ~Ilv~vd~s~~s~~a~~~a~~la~~~~---a~l~llhV~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~~~~g- 116 (181)
...+++.+...-...++...+..+..+ .++++++.-+.- -.....+.-...+ .+..++.-++.. .+....|
T Consensus 55 ~~~l~LsgGsTP~~~y~~L~~~~~~~~idw~~v~~f~~DEr~gvp~~~~~Sn~~~~---~~~Ll~~v~i~~~~i~~~~~~ 131 (289)
T 3hn6_A 55 PFILGLPTGSSPIGMYKNLIELNKNKKISFQNVITFNMDEYIGIEENHPESYHSFM---WNNFFSHIDIKKENINILNGN 131 (289)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSCCTTSTTSHHHHH---HHHTGGGSCCCGGGEECCCTT
T ss_pred cEEEEECCCccHHHHHHHHHHhHhhcCCCchheEEEeCcceecCCCCcHHHHHHHH---HHHhhccCCCCHHHeecCCCC
Confidence 356666666555666666665543322 467777775532 0111111111111 223333323321 1222333
Q ss_pred --ChHHHHHHHHHH----hCCCEEEEeccCCCcccccccCc
Q 030208 117 --DAAKVICKEAER----LKPAAVVIGSRGRGLIQSVLQGS 151 (181)
Q Consensus 117 --~~~~~I~~~a~~----~~~dliV~g~~~~~~~~~~~~gs 151 (181)
++.++..+|.+. .++|++++|--..+.....+-|+
T Consensus 132 ~~d~~~~a~~Ye~~i~~~~~~Dl~lLGmG~DGH~asnfPg~ 172 (289)
T 3hn6_A 132 ASNLKKECEEYEKKIKSFGGIMLFVGGIGPDGHIAFNEPGS 172 (289)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCSEEEEECCTTSCBTTBCTTC
T ss_pred CCCHHHHHHHHHHHHhhcCCCCEEEEccCCCCceeecCCCC
Confidence 566666665433 26899999987776666666564
No 263
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=23.34 E-value=2.4e+02 Score=21.29 Aligned_cols=82 Identities=15% Similarity=-0.025 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChHHH--HHHHHHHhCC-CEEEEeccCCCcccccccCchhhHHHhcCC
Q 030208 85 IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAERLKP-AAVVIGSRGRGLIQSVLQGSVGEYCLHHCK 161 (181)
Q Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~~~--I~~~a~~~~~-dliV~g~~~~~~~~~~~~gs~~~~ll~~~~ 161 (181)
...++..+.++...+.... .+.+-.-+-..+..+. +.+.|++.++ |.+++..........--+=..-+.|+..+.
T Consensus 57 Ls~~Er~~v~~~~~~~~~g--rvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~ 134 (311)
T 3h5d_A 57 LTHDEELELFAAVQKVVNG--RVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASD 134 (311)
T ss_dssp SCHHHHHHHHHHHHHHSCS--SSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCS
T ss_pred CCHHHHHHHHHHHHHHhCC--CCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 3345555555554433222 2444322211133333 3456777776 988887654322221111123367888888
Q ss_pred CccEEEEc
Q 030208 162 TAPIIVVP 169 (181)
Q Consensus 162 ~~pVlvv~ 169 (181)
.||++..
T Consensus 135 -lPiilYn 141 (311)
T 3h5d_A 135 -LPIIIYN 141 (311)
T ss_dssp -SCEEEEE
T ss_pred -CCEEEEe
Confidence 9999874
No 264
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.22 E-value=66 Score=26.36 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
.+.|.+..+..+.++|++.+..-+.+-+.-+.++++++-.... +||+.+.-+
T Consensus 77 ~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~g-~pVi~v~tp 128 (511)
T 2xdq_B 77 VDNIIRKDTEEHPDLIVLTPTCTSSILQEDLQNFVRRASLSTT-ADVLLADVN 128 (511)
T ss_dssp HHHHHHHHHHHCCSEEEEECCHHHHTTCCCHHHHHHHHHHHCS-SEEEECCCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHHHHhccCHHHHHHHhhhccC-CCEEEeeCC
Confidence 4555555555556666555555444433334444444444444 565555443
No 265
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=23.20 E-value=2.5e+02 Score=21.45 Aligned_cols=89 Identities=9% Similarity=0.066 Sum_probs=44.8
Q ss_pred eEEEEEcCChh--hHHHHHHHHHHhc-cCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChH
Q 030208 43 DILIAVDHGPN--SKHAFDWALIHLC-RLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (181)
Q Consensus 43 ~Ilv~vd~s~~--s~~a~~~a~~la~-~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~ 119 (181)
++++|--+... ....++...+++. ....++.++|-...+ ..++..+.++ +.+...+++++..-......
T Consensus 227 ~~i~pgHg~~~~~~~~~~~~~~~~~~~~~~~k~~i~~~S~~g-------nT~~la~~i~-~~l~~~g~~v~~~~~~~~~~ 298 (404)
T 2ohh_A 227 QMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHG-------STRKMAHAIA-EGAMSEGVDVRVYCLHEDDR 298 (404)
T ss_dssp SEEECSSSCBBSSHHHHHHHHHHHHTTCCCSEEEEEECCSSS-------HHHHHHHHHH-HHHHTTTCEEEEEETTTSCH
T ss_pred cEEecCCCccccCHHHHHHHHHHHhccCCCCcEEEEEECCCh-------HHHHHHHHHH-HHHHhCCCeEEEEECCCCCH
Confidence 34554443321 4555555555554 345677777764422 1222233322 22233345555443334334
Q ss_pred HHHHHHHHHhCCCEEEEeccCC
Q 030208 120 KVICKEAERLKPAAVVIGSRGR 141 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~~~~ 141 (181)
..+.+...+ +|.||+|+.-.
T Consensus 299 ~~~~~~l~~--~d~iiigsP~y 318 (404)
T 2ohh_A 299 SEIVKDILE--SGAIALGAPTI 318 (404)
T ss_dssp HHHHHHHHT--CSEEEEECCEE
T ss_pred HHHHHHHHH--CCEEEEECccc
Confidence 455554554 99999998753
No 266
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=23.18 E-value=1.5e+02 Score=23.88 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=13.0
Q ss_pred cCCCccEEEEcCCCCCCC
Q 030208 159 HCKTAPIIVVPGKGTSPS 176 (181)
Q Consensus 159 ~~~~~pVlvv~~~~~~~~ 176 (181)
+.. +||++++..++.+.
T Consensus 137 ~~~-ipV~~I~GNHD~~~ 153 (431)
T 3t1i_A 137 NIS-IPVFSIHGNHDDPT 153 (431)
T ss_dssp CBC-SCEEECCCSSSCCB
T ss_pred cCC-CcEEEEccCCCCcc
Confidence 346 99999998877653
No 267
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=23.05 E-value=1.5e+02 Score=18.74 Aligned_cols=46 Identities=9% Similarity=0.124 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcC
Q 030208 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 121 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
+.++.+++..+|+|++...-.. ..++ ...+.+-+..+++||+++-.
T Consensus 52 ~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~ 97 (152)
T 3eul_A 52 AALELIKAHLPDVALLDYRMPG-MDGA---QVAAAVRSYELPTRVLLISA 97 (152)
T ss_dssp HHHHHHHHHCCSEEEEETTCSS-SCHH---HHHHHHHHTTCSCEEEEEES
T ss_pred HHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCeEEEEEc
Confidence 3444455556777777654221 1111 12233333333366666644
No 268
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=22.83 E-value=1.8e+02 Score=22.06 Aligned_cols=42 Identities=14% Similarity=-0.085 Sum_probs=30.1
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhH-HHhcCCCccEEE
Q 030208 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEY-CLHHCKTAPIIV 167 (181)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~-ll~~~~~~pVlv 167 (181)
|.......+....+.+|.||+-...++.. +. +.+++. +||+=
T Consensus 76 gEsl~DTarvls~~~~D~iviR~~~~~~~---------~~~la~~~~-vPVIN 118 (291)
T 3d6n_B 76 GESFFDTLKTFEGLGFDYVVFRVPFVFFP---------YKEIVKSLN-LRLVN 118 (291)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEESSCCCS---------CHHHHHTCS-SEEEE
T ss_pred CCcHHHHHHHHHHhcCCEEEEEcCChHHH---------HHHHHHhCC-CCEEe
Confidence 55566666677777789999987755443 45 778888 99863
No 269
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=22.76 E-value=2.3e+02 Score=22.35 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=29.0
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
++|+++.|+...-..|...+.+.....+.++.++..
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~~l 323 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPVYL 323 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 789999999988888887777777777777777654
No 270
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=22.71 E-value=2.5e+02 Score=21.18 Aligned_cols=111 Identities=12% Similarity=-0.012 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecC--CchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecCChH--HHHHHHHHHh
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSS--VQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA--KVICKEAERL 129 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~--~~I~~~a~~~ 129 (181)
...+++.-++.....|.. -+.+.-. .......++..+.++...+.... .+.+-.-+-..+.. -++.+.|++.
T Consensus 27 D~~~l~~lv~~li~~Gv~--gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~la~~A~~~ 102 (309)
T 3fkr_A 27 DLASQKRAVDFMIDAGSD--GLCILANFSEQFAITDDERDVLTRTILEHVAG--RVPVIVTTSHYSTQVCAARSLRAQQL 102 (309)
T ss_dssp CHHHHHHHHHHHHHTTCS--CEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT--SSCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCC--EEEECccccCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCCchHHHHHHHHHHHHHc
Confidence 445555555554444432 2333221 22233345555555554443322 34443222111333 3345568888
Q ss_pred CCCEEEEeccCC---Cccc-ccccCchhhHHHhcCCCccEEEEcC
Q 030208 130 KPAAVVIGSRGR---GLIQ-SVLQGSVGEYCLHHCKTAPIIVVPG 170 (181)
Q Consensus 130 ~~dliV~g~~~~---~~~~-~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (181)
++|.+++-..-. .... .-++ ..-+.|+..+. .||++...
T Consensus 103 Gadavlv~~Pyy~~~~~~s~~~l~-~~f~~va~a~~-lPiilYn~ 145 (309)
T 3fkr_A 103 GAAMVMAMPPYHGATFRVPEAQIF-EFYARVSDAIA-IPIMVQDA 145 (309)
T ss_dssp TCSEEEECCSCBTTTBCCCHHHHH-HHHHHHHHHCS-SCEEEEEC
T ss_pred CCCEEEEcCCCCccCCCCCHHHHH-HHHHHHHHhcC-CCEEEEeC
Confidence 999998876532 1111 1111 22357888888 99998743
No 271
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=22.66 E-value=1.5e+02 Score=18.55 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHh--cCCCccEEEEcCC
Q 030208 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGK 171 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~ 171 (181)
.++.++.+++..+|+||+...-.. ..++ ...+.+-. ..+++||+++-..
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANMPK-ISGM---DLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCC-CCHH---HHHHHHHcCcccCCCCEEEEeCC
Confidence 344455566667899999865322 1111 23344443 2333888888554
No 272
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=22.30 E-value=2.2e+02 Score=20.35 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=7.3
Q ss_pred HHHHHHHhCCCEEEEec
Q 030208 122 ICKEAERLKPAAVVIGS 138 (181)
Q Consensus 122 I~~~a~~~~~dliV~g~ 138 (181)
+++.+.+.++-+|+++.
T Consensus 81 ~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 81 AIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHTTCCEEEESS
T ss_pred HHHHHHHcCCCEEEecC
Confidence 33334444444444443
No 273
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=22.10 E-value=2.3e+02 Score=20.48 Aligned_cols=78 Identities=4% Similarity=-0.095 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCC------chhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec------CChHHH
Q 030208 54 SKHAFDWALIHLCRLADTIHLVHAVSSV------QNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------GDAAKV 121 (181)
Q Consensus 54 s~~a~~~a~~la~~~~a~l~llhV~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~------g~~~~~ 121 (181)
+...++.++++|...|++..++|.-... ......+...+.++++. +..+..++.+-++... .+..+.
T Consensus 102 ~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~-~~a~~~Gv~l~lE~~~~~~~~~~~~~~~ 180 (287)
T 3kws_A 102 CMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMG-TFAAQHGTSVIFEPLNRKECFYLRQVAD 180 (287)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHH-HHHHHTTCCEEECCCCTTTCSSCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHH-HHHHHcCCEEEEEecCcccCcccCCHHH
Confidence 4567888899999999988888753111 12223344455555543 3344456666554332 134677
Q ss_pred HHHHHHHhCCC
Q 030208 122 ICKEAERLKPA 132 (181)
Q Consensus 122 I~~~a~~~~~d 132 (181)
+.++++..+.+
T Consensus 181 ~~~ll~~v~~~ 191 (287)
T 3kws_A 181 AASLCRDINNP 191 (287)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHcCCC
Confidence 88888886654
No 274
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.08 E-value=1.5e+02 Score=18.31 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCCEEEEecc
Q 030208 120 KVICKEAERLKPAAVVIGSR 139 (181)
Q Consensus 120 ~~I~~~a~~~~~dliV~g~~ 139 (181)
++.++..++..+|+|++...
T Consensus 44 ~~a~~~l~~~~~dlii~d~~ 63 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLM 63 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETT
T ss_pred HHHHHHHHhcCCCEEEEecc
Confidence 34445555666788887765
No 275
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2
Probab=21.96 E-value=51 Score=25.91 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=39.3
Q ss_pred EEEecCChHHHHHHHHHHhCCCEEEEeccCCCcc-cc------cccCc-----hhhHHHhcCCCccEEEEcCC
Q 030208 111 ARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLI-QS------VLQGS-----VGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 111 ~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~-~~------~~~gs-----~~~~ll~~~~~~pVlvv~~~ 171 (181)
+.+.+-....++++.|++.++.+|+-.+.+.... .+ .+.|. .+..++.+.. +||.+-=..
T Consensus 37 fNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~ga~~~a~~v~~~A~~~~-VPVaLHlDH 108 (357)
T 3qm3_A 37 VNVVGTDSINAVLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYG-VPVILHTDH 108 (357)
T ss_dssp EECCSHHHHHHHHHHHHHHTSCEEEEECHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccCccchhhHHHHHHHHHHHHHHHHHHCC-CcEEEECCC
Confidence 3444447899999999999999999876542111 11 12233 2567778888 999775433
No 276
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=21.93 E-value=1.4e+02 Score=20.87 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=28.5
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
.+.+++.++.+..+...++.+ +.|+..|+++..+.-..
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~-~~ak~~g~~vi~iT~~~ 151 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAV-EEAHDLEMKVIALTGGS 151 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHHTTCEEEEEEETT
T ss_pred CCCEEEEEeCCCCCHHHHHHH-HHHHHCCCcEEEEECCC
Confidence 477999999988887766655 67777788887776543
No 277
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=21.81 E-value=1.1e+02 Score=21.95 Aligned_cols=36 Identities=8% Similarity=0.265 Sum_probs=28.6
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.+.+++.++.+..+...++.+ +.|+..|+++..+.-
T Consensus 108 ~~Dv~I~iS~SG~t~~~i~~~-~~Ak~~G~~vI~IT~ 143 (243)
T 3cvj_A 108 NKDVIMIISNSGRNTVPVEMA-IESRNIGAKVIAMTS 143 (243)
T ss_dssp TTCEEEEECSSCCSHHHHHHH-HHHHHHTCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHH-HHHHHCCCEEEEEeC
Confidence 477999999998888887766 777778888877654
No 278
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=21.50 E-value=1.1e+02 Score=21.32 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=26.9
Q ss_pred CCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEE
Q 030208 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (181)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV 77 (181)
.+.+++.++.+..+...++.+ +.|+..|+++..+.-
T Consensus 131 ~~DvvI~iS~SG~t~~~i~~~-~~ak~~G~~vIaIT~ 166 (212)
T 2i2w_A 131 EGDVLLGISTSGNSANVIKAI-AAAREKGMKVITLTG 166 (212)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHHHTCEEEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHH-HHHHHCCCeEEEEEC
Confidence 377999999888887766655 677777888777655
No 279
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.24 E-value=1.5e+02 Score=18.24 Aligned_cols=48 Identities=6% Similarity=0.178 Sum_probs=22.9
Q ss_pred HHHHHHHH-hCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc-CCC
Q 030208 121 VICKEAER-LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP-GKG 172 (181)
Q Consensus 121 ~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~-~~~ 172 (181)
+.++..++ ..+|++++...-.. ..++ ...+.+-...+.+|++++- ...
T Consensus 50 ~al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~~~ 99 (138)
T 2b4a_A 50 AFFQHRSQLSTCDLLIVSDQLVD-LSIF---SLLDIVKEQTKQPSVLILTTGRH 99 (138)
T ss_dssp HHHHTGGGGGSCSEEEEETTCTT-SCHH---HHHHHHTTSSSCCEEEEEESCC-
T ss_pred HHHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEECCCC
Confidence 33344455 56788887754321 1111 1223333333337777775 443
No 280
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=21.07 E-value=2.9e+02 Score=21.24 Aligned_cols=126 Identities=6% Similarity=-0.024 Sum_probs=64.0
Q ss_pred CeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCch------hhHHHHHHHHHHHHHHHHhhhcCceEEEEEec
Q 030208 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN------QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE 115 (181)
Q Consensus 42 ~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 115 (181)
..+.+-+-++. ...+..+.+.+...|....=+|.-.+... ........+.+.++.+...+..++.+...+..
T Consensus 58 ~p~~vQL~g~~--p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~ 135 (350)
T 3b0p_A 58 HPIALQLAGSD--PKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRL 135 (350)
T ss_dssp CSEEEEEECSC--HHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEES
T ss_pred CeEEEEeCCCC--HHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEec
Confidence 34555554432 24455555666666776666776322211 01111122333333444333335666665554
Q ss_pred C-C------hHHHHHHHHHHhCCCEEEEeccCCC-cccc----c---ccCchhhHHHhcC-CCccEEEEcC
Q 030208 116 G-D------AAKVICKEAERLKPAAVVIGSRGRG-LIQS----V---LQGSVGEYCLHHC-KTAPIIVVPG 170 (181)
Q Consensus 116 g-~------~~~~I~~~a~~~~~dliV~g~~~~~-~~~~----~---~~gs~~~~ll~~~-~~~pVlvv~~ 170 (181)
| + ....+.+.+++.++|.|++..+... +... . ..-....++.+.. . +||++.-.
T Consensus 136 g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~-iPVianGg 205 (350)
T 3b0p_A 136 GLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQ-LTFVTNGG 205 (350)
T ss_dssp CBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTT-SEEEEESS
T ss_pred CcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCC-CeEEEECC
Confidence 4 2 2456667778889999999654321 1110 0 0112345666666 6 99988654
No 281
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=20.92 E-value=2.4e+02 Score=20.21 Aligned_cols=40 Identities=10% Similarity=-0.021 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCC-------hhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 40 RGRDILIAVDHG-------PNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 40 ~~~~Ilv~vd~s-------~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
.+.+||+-.... ..+..+++.+.+.+...+.++.++++.+
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~ 70 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQ 70 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCC
Confidence 345666554332 2355777788787777788888888754
No 282
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=20.88 E-value=2e+02 Score=23.91 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
......+.|.+.++..||.-+. -|.++..+.+.-+.||++.+-+.
T Consensus 412 ia~aa~~~A~~l~a~aIv~~T~---------sG~tA~~iSr~RP~~pI~a~T~~ 456 (526)
T 4drs_A 412 IACSAVESAHDVNAKLIITITE---------TGNTARLISKYRPSQTIIACTAK 456 (526)
T ss_dssp HHHHHHHHHHHTTCSEEEEECS---------SSHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhCCCCEEEEECC---------CcHHHHHHHhhCCCCCEEEECCC
Confidence 4455667788889998887654 27888999998888999998653
No 283
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=20.84 E-value=2.6e+02 Score=20.63 Aligned_cols=59 Identities=2% Similarity=0.014 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCce--EEEE
Q 030208 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVR--TKAR 112 (181)
Q Consensus 53 ~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~--~~~~ 112 (181)
.+.+.++.++++|+..|++..+++-..........+...+.++++. +..+..|+. +-++
T Consensus 105 ~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~-~~a~~~Gv~~~l~~E 165 (303)
T 3l23_A 105 KIMEYWKATAADHAKLGCKYLIQPMMPTITTHDEAKLVCDIFNQAS-DVIKAEGIATGFGYH 165 (303)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECSCCCCCSHHHHHHHHHHHHHHH-HHHHHTTCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHH-HHHHHCCCcceEEEc
Confidence 4567788999999999998777764322222222344445555544 334455676 5543
No 284
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=20.66 E-value=2e+02 Score=19.32 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=4.2
Q ss_pred ccEEEEcC
Q 030208 163 APIIVVPG 170 (181)
Q Consensus 163 ~pVlvv~~ 170 (181)
++|+.+|.
T Consensus 123 ~~v~~LPG 130 (164)
T 2is8_A 123 TLILNLPG 130 (164)
T ss_dssp EEEEEECS
T ss_pred eEEEECCC
Confidence 45555553
No 285
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=20.62 E-value=2.4e+02 Score=20.21 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=31.1
Q ss_pred hcCceEEEEEecC--ChH--HHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEc
Q 030208 104 VAMVRTKARIVEG--DAA--KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (181)
Q Consensus 104 ~~~i~~~~~~~~g--~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (181)
..+..+.+....+ +.. ...++.+...++|.||+.......... ..+ -+. .. +||+++-
T Consensus 33 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~-----~~~-~~~-~~-iPvV~~~ 94 (304)
T 3o1i_D 33 KQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH-----NLK-SWV-GN-TPVFATV 94 (304)
T ss_dssp HHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT-----THH-HHT-TT-SCEEECS
T ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH-----HHH-HHc-CC-CCEEEec
Confidence 3345555444444 432 334555556678888887554332222 223 334 56 8888873
No 286
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=20.56 E-value=2e+02 Score=23.73 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCCC
Q 030208 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKG 172 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (181)
......+.|.+.++..||+-+. -|.++..+.+.-+.||++.+-+..
T Consensus 382 ia~aa~~~a~~~~a~aIv~~T~---------sG~ta~~isr~RP~~pI~a~t~~~ 427 (500)
T 1a3w_A 382 VAASAVAAVFEQKAKAIIVLST---------SGTTPRLVSKYRPNCPIILVTRCP 427 (500)
T ss_dssp HHHHHHHHHHHHTCSCEEEECS---------SSHHHHHHHHTCCSSCEEEEESCT
T ss_pred HHHHHHHHHHhcCCCEEEEECC---------CchHHHHHHhhCCCCCEEEEcCCH
Confidence 4455566678888887776654 277888999988889999996544
No 287
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.46 E-value=1.7e+02 Score=18.49 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=10.1
Q ss_pred HHHHHHhCCCEEEEecc
Q 030208 123 CKEAERLKPAAVVIGSR 139 (181)
Q Consensus 123 ~~~a~~~~~dliV~g~~ 139 (181)
++..++..+|+|++...
T Consensus 51 ~~~l~~~~~dlvi~D~~ 67 (153)
T 3hv2_A 51 LQLLASREVDLVISAAH 67 (153)
T ss_dssp HHHHHHSCCSEEEEESC
T ss_pred HHHHHcCCCCEEEEeCC
Confidence 34445556777777654
No 288
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=20.28 E-value=1.1e+02 Score=22.37 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
...+++...+.++|+|.+|-+.....+.. -...+++ +... +|+++++..
T Consensus 22 t~~~~~~l~~~GaD~IelG~S~g~t~~~~--~~~v~~i-r~~~-~Pivl~~y~ 70 (234)
T 2f6u_A 22 TDEIIKAVADSGTDAVMISGTQNVTYEKA--RTLIEKV-SQYG-LPIVVEPSD 70 (234)
T ss_dssp CHHHHHHHHTTTCSEEEECCCTTCCHHHH--HHHHHHH-TTSC-CCEEECCSS
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHH--HHHHHHh-cCCC-CCEEEecCC
Confidence 35667777888999999997422222221 1233333 3456 999998765
No 289
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.28 E-value=1.6e+02 Score=17.99 Aligned_cols=18 Identities=11% Similarity=-0.154 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhCCCEEEE
Q 030208 119 AKVICKEAERLKPAAVVI 136 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~ 136 (181)
...|..+|+..++.+++.
T Consensus 46 ~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 46 KDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 444455555555555444
No 290
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=20.22 E-value=58 Score=26.11 Aligned_cols=28 Identities=0% Similarity=-0.225 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHhccCCCEEEEEEEec
Q 030208 52 PNSKHAFDWALIHLCRLADTIHLVHAVS 79 (181)
Q Consensus 52 ~~s~~a~~~a~~la~~~~a~l~llhV~~ 79 (181)
..+++.+++|.++|+..+.+|+++|=.+
T Consensus 187 ~~~eRiar~AFe~A~~r~~kVt~v~KaN 214 (413)
T 1lwd_A 187 ESISGFAHSCFQYAIQKKWPLYMSTKNT 214 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEECCc
Confidence 7789999999999988777888888544
No 291
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.19 E-value=2.6e+02 Score=20.33 Aligned_cols=79 Identities=11% Similarity=-0.017 Sum_probs=37.3
Q ss_pred ChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEecC-ChHHHHHHHHHHh
Q 030208 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG-DAAKVICKEAERL 129 (181)
Q Consensus 51 s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g-~~~~~I~~~a~~~ 129 (181)
++.....++.+.+.++..|-++.+..... ..+...+.++.+. .. ++..-+..-.. +.....++.+.+.
T Consensus 14 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~------~~~~~~~~i~~l~----~~-~vdgiIi~~~~~~~~~~~~~~~~~~ 82 (313)
T 3m9w_A 14 LERWQKDRDIFVKKAESLGAKVFVQSANG------NEETQMSQIENMI----NR-GVDVLVIIPYNGQVLSNVVKEAKQE 82 (313)
T ss_dssp SSTTHHHHHHHHHHHHHTSCEEEEEECTT------CHHHHHHHHHHHH----HT-TCSEEEEECSSTTSCHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEECCCC------CHHHHHHHHHHHH----Hc-CCCEEEEeCCChhhhHHHHHHHHHC
Confidence 34555666666666666776666543311 0111222222222 11 23322222111 2234566666666
Q ss_pred CCCEEEEeccC
Q 030208 130 KPAAVVIGSRG 140 (181)
Q Consensus 130 ~~dliV~g~~~ 140 (181)
++-+|.++...
T Consensus 83 ~iPvV~~~~~~ 93 (313)
T 3m9w_A 83 GIKVLAYDRMI 93 (313)
T ss_dssp TCEEEEESSCC
T ss_pred CCeEEEECCcC
Confidence 77777777653
No 292
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=20.18 E-value=3.2e+02 Score=21.44 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=20.7
Q ss_pred CCCCeEEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEe
Q 030208 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV 78 (181)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~ 78 (181)
+|+++||+ ++.+..+..+++ -++..|-++.+++..
T Consensus 4 m~~~kiLI-~g~g~~a~~i~~----aa~~~G~~~v~v~~~ 38 (446)
T 3ouz_A 4 MEIKSILI-ANRGEIALRALR----TIKEMGKKAICVYSE 38 (446)
T ss_dssp TCCCEEEE-CCCHHHHHHHHH----HHHHTTCEEEEEEEG
T ss_pred cccceEEE-ECCCHHHHHHHH----HHHHcCCEEEEEEcC
Confidence 46799999 454444444443 344457777776653
No 293
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=20.16 E-value=60 Score=19.33 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhCCCEEEEe
Q 030208 119 AKVICKEAERLKPAAVVIG 137 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g 137 (181)
...|..+|++.++..+.+.
T Consensus 42 ~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 42 TSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 3444555566666666555
No 294
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=20.16 E-value=2.1e+02 Score=19.34 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=4.8
Q ss_pred ccEEEEcC
Q 030208 163 APIIVVPG 170 (181)
Q Consensus 163 ~pVlvv~~ 170 (181)
++|+.+|.
T Consensus 135 ~~v~~LPG 142 (169)
T 1y5e_A 135 KVVFSMPG 142 (169)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 56666664
No 295
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=20.10 E-value=95 Score=20.58 Aligned_cols=98 Identities=11% Similarity=-0.003 Sum_probs=51.9
Q ss_pred EEEEEcCChhhHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceEEEEEec--C-C--h
Q 030208 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--G-D--A 118 (181)
Q Consensus 44 Ilv~vd~s~~s~~a~~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~--g-~--~ 118 (181)
+++.+.+. .-..++..|..+... |-+| +.. . . ....++..+++++..... | + .
T Consensus 27 vliSv~d~-dK~~l~~~a~~l~~l-Gf~i--~AT-~--------G---------Ta~~L~~~Gi~v~~v~k~~egg~~~~ 84 (143)
T 2yvq_A 27 ILIGIQQS-FRPRFLGVAEQLHNE-GFKL--FAT-E--------A---------TSDWLNANNVPATPVAWPSQEGQNPS 84 (143)
T ss_dssp EEEECCGG-GHHHHHHHHHHHHTT-TCEE--EEE-H--------H---------HHHHHHHTTCCCEEECCGGGC-----
T ss_pred EEEEeccc-chHHHHHHHHHHHHC-CCEE--EEC-c--------h---------HHHHHHHcCCeEEEEEeccCCCcccc
Confidence 77777653 334566677666543 4332 222 1 0 112223456777643321 2 2 0
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEE
Q 030208 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (181)
Q Consensus 119 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (181)
...|.+..++.++||||--..+.... ..-|...++.+-... +|++
T Consensus 85 ~~~i~d~i~~g~i~lVInt~~~~~~~--~~d~~~iRR~Av~~~-IP~~ 129 (143)
T 2yvq_A 85 LSSIRKLIRDGSIDLVINLPNNNTKF--VHDNYVIRRTAVDSG-IPLL 129 (143)
T ss_dssp CBCHHHHHHTTSCCEEEECCCCCGGG--HHHHHHHHHHHHHTT-CCEE
T ss_pred cccHHHHHHCCCceEEEECCCCCCcC--CccHHHHHHHHHHhC-CCeE
Confidence 03599999999999999987652211 122444455555555 6654
No 296
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=20.05 E-value=2.2e+02 Score=23.51 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCCcccccccCchhhHHHhcCCCccEEEEcCC
Q 030208 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (181)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (181)
......+.|.+.++..||.-+. -|.++..+.+.-+.||++.+-+.
T Consensus 397 ia~aa~~~A~~l~a~aIv~~T~---------SG~tA~~iSr~RP~~PIia~T~~ 441 (511)
T 3gg8_A 397 VARAAVETAECVNAAIILALTE---------TGQTARLIAKYRPMQPILALSAS 441 (511)
T ss_dssp HHHHHHHHHHHHTCSEEEEECS---------SSHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECC---------CchHHHHHHhhCCCCCEEEEcCC
Confidence 4455566778889998887655 27788889998888999998543
No 297
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=20.01 E-value=1.5e+02 Score=19.82 Aligned_cols=15 Identities=7% Similarity=-0.028 Sum_probs=9.9
Q ss_pred CChhhHHHHHHHHHH
Q 030208 50 HGPNSKHAFDWALIH 64 (181)
Q Consensus 50 ~s~~s~~a~~~a~~l 64 (181)
+......++++|.+.
T Consensus 96 g~T~~~~aL~~a~~~ 110 (178)
T 2xgg_A 96 GSTNTSDGLKACKQI 110 (178)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 345566777777775
Done!