BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030209
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1
PE=1 SV=2
Length = 204
Score = 256 bits (654), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 121/129 (93%), Positives = 125/129 (96%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDR+FIGLSGLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGPY CQPVIAGL D+DKPFI
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFI 120
Query: 121 CTMDSIGAK 129
CTMDSIGAK
Sbjct: 121 CTMDSIGAK 129
>sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2
PE=1 SV=1
Length = 204
Score = 252 bits (643), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 119/129 (92%), Positives = 124/129 (96%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD LFIGLSGLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGP+ CQPVIAGL D++KPFI
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFI 120
Query: 121 CTMDSIGAK 129
CTMDSIGAK
Sbjct: 121 CTMDSIGAK 129
>sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1
Length = 204
Score = 248 bits (633), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 142/178 (79%), Gaps = 6/178 (3%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRI KIHD+L++GLSGLATD
Sbjct: 1 MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
QTLYQR FRHKLYQLREER+M+PETFASLVSALLYEKRFGPYFCQPVIAGL ++DKPFI
Sbjct: 61 QTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFI 120
Query: 121 CTMDSIGAKYVGSLQKILLLLELLESLFMVPVRQCSSLIWNPMSCLKLYLKLCYHLLT 178
CTMDSIGAK + + ++ ESL+ C S+ M +L+ + LL+
Sbjct: 121 CTMDSIGAKELA--KDFVVAGTAAESLYGA----CESMYKPDMEPEELFETISQALLS 172
>sp|Q9LST7|PSB3_ORYSJ Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica
GN=PBC1 PE=2 SV=1
Length = 204
Score = 246 bits (628), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 114/129 (88%), Positives = 125/129 (96%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQT+ATDFQR+ KIHD+L+IGLSGLATD+
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
QTLYQRLVFRHKLYQLREERDMKP+TFASLVSALLYEKRFGPYFCQPVIAGL ++++PFI
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFI 120
Query: 121 CTMDSIGAK 129
CTMD IGAK
Sbjct: 121 CTMDCIGAK 129
>sp|Q55D66|PSB3_DICDI Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3
PE=3 SV=1
Length = 205
Score = 174 bits (441), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 99/129 (76%), Gaps = 1/129 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG A + MVGKNC AIASD R G+Q QTI+ DF ++ +I+D+ F+G+SGL TD+
Sbjct: 1 MSIMAYNGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDA 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDK-PF 119
QTLYQ+LVFRH LY+LREERDM P ++L++ +LYEKRFGPYF +P+I GL D PF
Sbjct: 61 QTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPF 120
Query: 120 ICTMDSIGA 128
I MD IGA
Sbjct: 121 ISGMDLIGA 129
>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2
SV=1
Length = 205
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 101/132 (76%), Gaps = 1/132 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG A++AM GK C AIA+DRR GVQ Q + TDFQ+I + DRL+IGL+GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT+ QRL FR LY+L+E R +KP+TF S+VS LLYE+RFGPY+ +PVIAGL + +PF
Sbjct: 61 QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 120
Query: 120 ICTMDSIGAKYV 131
IC++D IG V
Sbjct: 121 ICSLDLIGCPMV 132
>sp|P33672|PSB3_BOVIN Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3
Length = 205
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT+ QRL FR LY+L+E R +KP T S+V+ LLYEKRFGPY+ +PVIAGL + KPF
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 120 ICTMDSIGAKYV 131
IC++D IG V
Sbjct: 121 ICSLDLIGCPMV 132
>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1
Length = 205
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT+ QRL FR LY+L+E R +KP T S+V+ LLYEKRFGPY+ +PVIAGL + KPF
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 120 ICTMDSIGAKYV 131
IC++D IG V
Sbjct: 121 ICSLDLIGCPMV 132
>sp|P49720|PSB3_HUMAN Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2
Length = 205
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT+ QRL FR LY+L+E R +KP T S+V+ LLYEKRFGPY+ +PVIAGL + KPF
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 120 ICTMDSIGAKYV 131
IC++D IG V
Sbjct: 121 ICSLDLIGCPMV 132
>sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1
SV=1
Length = 205
Score = 167 bits (422), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MS+ YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD
Sbjct: 1 MSVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT+ QRL FR LY+L+E R +KP T S+V+ LLYEKRFGPY+ +PVIAGL + KPF
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 120 ICTMDSIGAKYV 131
IC++D IG V
Sbjct: 121 ICSLDLIGCPMV 132
>sp|Q9Y7T8|PSB3_SCHPO Probable proteasome subunit beta type-3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup3 PE=3 SV=1
Length = 204
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 98/127 (77%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI EYNG + VAM GKNC AIASD RLGVQ ++ +F ++ + D+ ++GL+GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
QTLY+ ++ LY+ REER ++P+TFA+LVS+ LYEKRFGPYF PV+AG+S+++ PFI
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFI 120
Query: 121 CTMDSIG 127
C DSIG
Sbjct: 121 CGFDSIG 127
>sp|Q9XYN7|PSB3_DROME Proteasome subunit beta type-3 OS=Drosophila melanogaster
GN=Prosbeta3 PE=2 SV=1
Length = 205
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 95/128 (74%), Gaps = 1/128 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG +VAM GK+C AIA+D R G+Q QTI+TDF+++ I R+F+GL+GL TD
Sbjct: 1 MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDI 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
T+ RL+FR LY+ RE R+M P+ F++++S+ LYE RFGPYF +PV+AGL + +PF
Sbjct: 61 LTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPF 120
Query: 120 ICTMDSIG 127
IC MD IG
Sbjct: 121 ICNMDLIG 128
>sp|Q23237|PSB3_CAEEL Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3
PE=1 SV=1
Length = 204
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 94/127 (74%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI Y G +VAM G C IASD R+G Q+ TIATD +++ K+ D++++GL+G +D+
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
+T+ ++++FR LY+LRE R++KP+ + ++S L Y+ RFG YF +P++AGL D +KP+I
Sbjct: 61 RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYI 120
Query: 121 CTMDSIG 127
C MD+IG
Sbjct: 121 CCMDTIG 127
>sp|Q9NDA1|PSB3_TRYBB Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3
PE=2 SV=1
Length = 205
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 91/129 (70%), Gaps = 1/129 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI Y+G + +AM GK CF + SD RLG QL+TI+ + ++ I+D + +GL+GL TD
Sbjct: 1 MSILTYSGGSCLAMAGKECFVVISDNRLGEQLKTISMEVPKLHVINDGIVMGLTGLRTDQ 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDE-DKPF 119
QT Q++ FR ++Y+LREERD+ + FA+LVS++LYE RFGP+F +PVI + + + +
Sbjct: 61 QTFAQKVNFRTEMYKLREERDINGKAFAALVSSMLYEARFGPWFVEPVIGTIDRKTGEVY 120
Query: 120 ICTMDSIGA 128
+C D IGA
Sbjct: 121 LCATDLIGA 129
>sp|P25451|PSB3_YEAST Proteasome subunit beta type-3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP3 PE=1 SV=1
Length = 205
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 83/122 (68%), Gaps = 2/122 (1%)
Query: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQR 66
NG +VAM GK+C AIA D RLG Q ++ F++I + +F+G++GLATD TL +
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFH-YGHVFLGITGLATDVTTLNEM 66
Query: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGL-SDEDKPFICTMDS 125
++ LY+L+EER ++PETF LVS+ LYE+RFGPYF PV+AG+ S KPFI D
Sbjct: 67 FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDL 126
Query: 126 IG 127
IG
Sbjct: 127 IG 128
>sp|Q9N9W8|PSB3_GIAIN Proteasome subunit beta type-3 OS=Giardia intestinalis GN=PRSBETA3
PE=2 SV=1
Length = 207
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Query: 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIA-TDFQRISKIHDRLFIGLSGLATDS 60
+I EYNGSAL+ + G +C A+A+D+RLG QT+ + +RI ++ +GL+GL TD
Sbjct: 3 NIWEYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDV 62
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
T Y+++ + LY L+E+R+++P A ++S+ LY+ RFGPYF P+IAG + KP++
Sbjct: 63 LTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYL 122
Query: 121 CTMDSIG 127
MD+IG
Sbjct: 123 GAMDTIG 129
>sp|P42742|PSB1_ARATH Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1
SV=2
Length = 223
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%)
Query: 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLY 64
+ NG VA+ G + IA+D R+ ++ D+ +I K+ DR + SG D + L
Sbjct: 12 DNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQ 71
Query: 65 QRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMD 124
+ L RH +YQ + + M A L+S LY KRF PY+ V+ GL +E K + T D
Sbjct: 72 KVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYD 131
Query: 125 SIGA 128
++G+
Sbjct: 132 AVGS 135
>sp|O64464|PSB1_ORYSJ Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica
GN=PBF1 PE=2 SV=1
Length = 221
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%)
Query: 3 ITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQT 62
+ E NG VA+ G + +A+D RL V + D +I ++ D+ + SG D +
Sbjct: 8 VYENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKA 67
Query: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICT 122
L++ L R LYQ + + M A L+S LY KRF PY+ V+ GL E K + T
Sbjct: 68 LHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFT 127
Query: 123 MDSIGA 128
D++G+
Sbjct: 128 YDAVGS 133
>sp|O82531|PSB1_PETHY Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1
Length = 223
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%)
Query: 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLY 64
+ NG VA+ G + IA+D R+ + D+ +I K+ D+ + SG D + L
Sbjct: 12 DNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQ 71
Query: 65 QRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMD 124
+ L RH +YQ + + M L+S LY KRF PY+ V+ GL E K + T D
Sbjct: 72 KVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYD 131
Query: 125 SIGA 128
++G+
Sbjct: 132 AVGS 135
>sp|Q9UQY2|PSB6_SCHPO Probable proteasome subunit beta type-6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pam1 PE=3 SV=1
Length = 225
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQ-RISKIHDRLFIGLSGLATDSQTLYQ 65
NG VA+ G +A D R V I T FQ R+ ++ D L IG SG D+ L +
Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
R+ R LY ER M ++ A +V LLY KRF PY+ +AG+ E K I + D
Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDP 130
Query: 126 IGA 128
+G+
Sbjct: 131 VGS 133
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDP 154
Query: 126 IGA 128
+G+
Sbjct: 155 VGS 157
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1
Length = 241
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL +
Sbjct: 35 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDP 154
Query: 126 IGA 128
+G+
Sbjct: 155 VGS 157
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1
Length = 240
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL +
Sbjct: 34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDP 153
Query: 126 IGA 128
+G+
Sbjct: 154 VGS 156
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1
SV=3
Length = 240
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL +
Sbjct: 34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDP 153
Query: 126 IGA 128
+G+
Sbjct: 154 VGS 156
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 13/162 (8%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL + D + K+ D IG SG D TL +
Sbjct: 32 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTK 91
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E + + + D
Sbjct: 92 IIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDP 151
Query: 126 IGA------KYVGSLQKIL-------LLLELLESLFMVPVRQ 154
+G+ K GS +L + + +E++ VP+ Q
Sbjct: 152 VGSYQRDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQ 193
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 13/162 (8%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL + D + K+ D IG SG D TL +
Sbjct: 31 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTK 90
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E + + + D
Sbjct: 91 IIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDP 150
Query: 126 IGA------KYVGSLQKIL-------LLLELLESLFMVPVRQ 154
+G+ K GS +L + + +E++ VP+ Q
Sbjct: 151 VGSYQRDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQ 192
>sp|A3MXQ6|PSB2_PYRCJ Proteasome subunit beta 2 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=psmB2 PE=3 SV=1
Length = 203
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + K +A+++R+ T++T +++ ++DRL I +G+ D QTL + L
Sbjct: 8 GATAVGIKTKEGVVLAAEKRVSYGFYTLSTAGKKVFIVNDRLAIASAGIIADMQTLAKIL 67
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
K Y+L +R A L+S +++ +RF P+F + ++ G+ DE P + MD +G
Sbjct: 68 KLNAKAYELEMKRKPSVHAMAKLLSVVMFSRRFMPFFAEVLVGGIDDEG-PHLIVMDPLG 126
Query: 128 A 128
+
Sbjct: 127 S 127
>sp|Q8ZST5|PSB2_PYRAE Proteasome subunit beta 2 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=psmB2 PE=3 SV=1
Length = 203
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + K+ +A+++R+ T+++ +++ I D+L I +G+ D QTL + L
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFVIDDKLAIASAGIIADMQTLAKIL 67
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
K Y+L +R + A L+S +++ +RF P+F + ++ G+ DE+ P + MD +G
Sbjct: 68 KLNAKAYELEMKRKPSTHSMARLLSVIMFSRRFMPFFAEVLVGGI-DEEGPHLIVMDPLG 126
Query: 128 A 128
+
Sbjct: 127 S 127
>sp|P40304|PSB1_DROME Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26
PE=2 SV=2
Length = 235
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%)
Query: 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLY 64
E NG ++VA+ G + IA+D RL + ++ K+ + +G +G D+ +L
Sbjct: 26 ESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLT 85
Query: 65 QRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMD 124
+ R + Y+ R M E A ++S +Y +RF PY+ ++AG+ +E K + + D
Sbjct: 86 GSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYD 145
Query: 125 SIG 127
IG
Sbjct: 146 PIG 148
>sp|Q0W2D6|PSB_UNCMA Proteasome subunit beta OS=Uncultured methanogenic archaeon RC-I
GN=psmB PE=3 SV=1
Length = 208
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
M +Y G+ + ++ +A++RR + + D Q+I +I D + ++G D
Sbjct: 2 MEDKQYKGTTTIGIICDQGVVLATERRATMGNFIASRDAQKIYRITDNAAMTIAGSVGDG 61
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
Q L + L KL++LR M + L+S +L E R+ PY+ Q +I GL D+ P I
Sbjct: 62 QRLARILQVEAKLFELRRHGSMSINALSMLLSNILAEMRYAPYYVQVLIGGL-DKAGPKI 120
Query: 121 CTMDSIGAK 129
++D +G +
Sbjct: 121 YSLDPLGGR 129
>sp|B1YDJ0|PSB2_PYRNV Proteasome subunit beta 2 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=psmB2 PE=3 SV=1
Length = 203
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + K+ +A+++R+ T++T +++ ++D+L I +G+ D Q L + L
Sbjct: 8 GATAVGIRAKDGVVLAAEKRVSYGFYTLSTAGKKVFIVNDKLAIASAGIIADMQALAKIL 67
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
+ Y+L ++ + A L+S +++ +RF P++ + ++ G+ DE+ P + MD +G
Sbjct: 68 KLNARSYELEVKKKPTVKAMAKLLSVVMFSRRFMPFYAEVLVGGV-DEEGPHLIVMDPLG 126
Query: 128 A 128
+
Sbjct: 127 S 127
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 18 NCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLR 77
+ +A+++R+ L ++ +++ +I D++ + +GL D QTL + + +LY+L
Sbjct: 15 DGVVLAAEKRVSYGLYLMSKSGKKVYRILDKMGMASAGLMADMQTLARIVEAEMRLYELD 74
Query: 78 EERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGA 128
K T A L+S +LYE+R PY+ + V+ GL DE+ + ++D IGA
Sbjct: 75 SNISPKVWTVAKLLSYILYERRLFPYYAEIVVGGL-DEEGSHLYSLDPIGA 124
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 65/121 (53%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V ++ + +A+D+R + + +++ KI D + + ++G D+Q + + L
Sbjct: 6 GTTTVGLICDDAVILATDKRASMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRAL 65
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
+ +LY++R +++ P A+L+S +L+ R P+ Q +I G D P + ++D +G
Sbjct: 66 IAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQIIIGGYDLTDGPKLFSLDPLG 125
Query: 128 A 128
Sbjct: 126 G 126
>sp|Q9U794|PSB1_TRYBB Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2
SV=1
Length = 258
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 7 NGSALVAMVGKNCFAIASDRRLGVQL-QTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
NG + A+ G N + +D RL +D ++ K+ DR+F+ SG+ D L Q
Sbjct: 51 NGGTIAAIAGSNYVVLGADTRLNGDFCIHTRSDTSKLFKLTDRIFLASSGMQADRLQLQQ 110
Query: 66 RLVFRHKLYQLREERDMKPET--FASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFIC-T 122
L +R + YQ + P T A L S +LY++RF PY+ +I G+ DE +C +
Sbjct: 111 MLKYRIQWYQYNNGGKV-PSTKAIAKLTSTMLYQRRFFPYYTFNMIVGI-DEKGAGVCYS 168
Query: 123 MDSIGA 128
D +G+
Sbjct: 169 YDPVGS 174
>sp|A4WMZ0|PSB2_PYRAR Proteasome subunit beta 2 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=psmB2 PE=3 SV=1
Length = 203
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + K+ +A+++R+ T+++ +++ I D+L I +G+ D Q+L + +
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGRKVFVIDDKLAIASAGIIADMQSLARIV 67
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
K Y+L + + A L+S +++ +R+ P+F + ++ G+ DE+ + MD +G
Sbjct: 68 KINAKAYELETRKKPTVRSMAKLLSVIMFSRRYMPFFAEVLVGGV-DEEGSHLIVMDPLG 126
Query: 128 A 128
+
Sbjct: 127 S 127
>sp|Q9P996|PSB_ARCFU Proteasome subunit beta OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmB PE=1 SV=1
Length = 213
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 1 MSITE---YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLA 57
MS+ E Y G+ V +V K+ +A+++R + + ++I +I DR+ + +G
Sbjct: 1 MSMIEEKIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSV 60
Query: 58 TDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDK 117
D+Q L + + LY++R ER A+L S LL R+ PY Q +I G+ E K
Sbjct: 61 GDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGK 120
Query: 118 PFICTMDSIGA 128
I ++D IG
Sbjct: 121 S-IYSIDPIGG 130
>sp|Q86A21|PSB1_DICDI Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1
PE=3 SV=1
Length = 236
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 7 NGSALVAMVGKNCFAIASDRRL---GVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTL 63
NG ++A+ GK+ IA D R+ G +QT + +I ++ + + SG+ D+ L
Sbjct: 29 NGGTVLAVAGKDYCVIAGDTRMSDGGYGIQT--RKYTKIFQLTKKCVLATSGMQADTIAL 86
Query: 64 YQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTM 123
+RL + ++ + M A +S LY KRF PY+ ++AG+ ++ + +I T
Sbjct: 87 QKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDEQGEGWIWTY 146
Query: 124 DSIGA----KYVGSLQKILLLLELLES 146
D++G+ KY L++ LL++
Sbjct: 147 DAVGSHERVKYSSQGSGNQLVIPLLDN 173
>sp|C5A7L1|PSB1_THEGJ Proteasome subunit beta 1 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB1 PE=3 SV=1
Length = 201
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
Query: 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQ 61
S + G+ V +V ++ +A+DRR + + + ++ +I D L I +GL D
Sbjct: 4 SPSAMKGTTTVGVVCRDGVVLAADRRATLGNMVTSKEVTKVFQIDDHLAIAGAGLVGDIL 63
Query: 62 TLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFIC 121
+L + L KLY+ + R+M + A+LVS +L+ R PYF +I G + KP +
Sbjct: 64 SLVRLLRAEAKLYRAKVGREMSVKALATLVSNVLHGSRHLPYFAWFLIGGY--DVKPRLY 121
Query: 122 TMDSIGA----KYVGSLQKILLLLELLESLF 148
++D+ G +++ + + L LLE F
Sbjct: 122 SIDAAGGVTEERFIAAGSGMEFALALLEENF 152
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
Y G+ V +V K+ +A+++R + + ++I +I DR+ + +G D+Q L +
Sbjct: 10 YKGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYRIADRVAMTTAGAVGDAQFLAR 69
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ KLY++R+E + A+L+S +L R+ PYF Q ++ G+ D+ P I ++D
Sbjct: 70 LISVEIKLYEIRKEEKPTVKAIATLLSNILNSVRWFPYFVQLLVGGV-DKRGPSIYSIDL 128
Query: 126 IGAKYVGSLQKI 137
+G G++++I
Sbjct: 129 LG----GAIEEI 136
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V ++ +A+DRR + ++I +IHD + + +G D+Q + +
Sbjct: 10 GTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVADAQKIVDLM 69
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYE--KRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+LY+LR R + A+++S +L+ K F PY Q ++ G +D+D P + +D
Sbjct: 70 RAEARLYELRHNRMISARALANMISHVLHSSLKAFRPYLVQLIVGGFNDDD-PALYNLDP 128
Query: 126 IGA 128
G+
Sbjct: 129 SGS 131
>sp|A1RSJ8|PSB1_PYRIL Proteasome subunit beta 1 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB1 PE=3 SV=1
Length = 203
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + K+ +A+++R+ T+++ +++ I+D+L I +G+ D QTL + L
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFIINDKLAIASAGIIADMQTLARIL 67
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
Y+L + A L+S +++ +R P++ + ++ G+ DE+ P + MD +G
Sbjct: 68 KLNVMSYELEVRKKPTVRAMAKLLSIIMFSRRLLPFYAEVLVGGV-DEEGPHLIVMDPLG 126
Query: 128 A 128
+
Sbjct: 127 S 127
>sp|B1L6X8|PSB2_KORCO Proteasome subunit beta 2 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB2 PE=3 SV=1
Length = 198
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 22 IASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81
+A+DRR+ ++ +++ I++R+ + +GL D Q L L + +Y+L E+
Sbjct: 17 LAADRRVSYNGFILSKSARKVFLINERVGVSTAGLPGDFQELVDVLKYNITMYELENEKA 76
Query: 82 MKPETFASLVSALLYEKRF-GPYFCQPVIAGLSDEDKPFICTMDSIGA 128
P A L+S LLY+ RF G Y+ + V+ G+ D P I +D G
Sbjct: 77 ATPTNVAKLLSILLYQGRFSGIYYAELVVGGI-DNSGPKIFVLDPAGG 123
>sp|B8D673|PSB1_DESK1 Proteasome subunit beta 1 OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=psmB1 PE=3 SV=1
Length = 202
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 22 IASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81
+AS++RL ++ + ++I I + + +G +GL D L + L K Y+L+ R+
Sbjct: 21 LASEKRLTYDGFVLSRNARKIHMITNHIGVGFAGLMGDVNFLVKVLRLEAKNYELQHGRE 80
Query: 82 MKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGA----KYV 131
+K + A L+S +LY + P + V+ G DE+ P + +D +G+ KYV
Sbjct: 81 IKTRSLAKLLSVILYSYKLAPMLTEVVVGGY-DEEGPSLYILDPVGSVIEEKYV 133
>sp|B6YSW2|PSB1_THEON Proteasome subunit beta 1 OS=Thermococcus onnurineus (strain NA1)
GN=psmB1 PE=3 SV=1
Length = 203
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQR 66
G+ V +V K+ +A+DRR + ++ + ++ +I D L + +G D +L +
Sbjct: 6 KGTTTVGIVCKDGVVLAADRRASLGNMVLSKEVTKVFQIDDHLALAGAGSVGDILSLVRL 65
Query: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSI 126
L KLY+ + R++ + A+L S +L+ RF PYF +IAG ++KP + ++D
Sbjct: 66 LRAEVKLYRAKVGREISVKALATLTSNILHGSRFMPYFGWFLIAGY--DEKPALYSLDMA 123
Query: 127 GA 128
G
Sbjct: 124 GG 125
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+ G+ V +V K+ +A+++R + + ++I KI DR+ + +G D+Q L +
Sbjct: 7 FKGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYKITDRIAMTTAGSVGDAQFLAR 66
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ LY +R+E + + A+LVS LL R+ PY Q +I G+ D+ I ++D
Sbjct: 67 LIKVETNLYTIRKEEEPTVKAVATLVSNLLNSVRYFPYLVQLLIGGV-DKTGAKIYSIDP 125
Query: 126 IGAKYVGSLQKI 137
IG G++++I
Sbjct: 126 IG----GAIEEI 133
>sp|D1Z199|PSB_METPS Proteasome subunit beta OS=Methanocella paludicola (strain DSM
17711 / JCM 13418 / NBRC 101707 / SANAE) GN=psmB PE=3
SV=1
Length = 205
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
M +Y G+ V ++ N +A++RR + + D Q+I ++ D + + ++G D
Sbjct: 1 MDDKQYKGTTTVGIICNNGLVLATERRATMGNLIASRDAQKIYQLTDNIAMTIAGSVGDG 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
Q L + L KL++LR M + L+S LL+E R ++ Q ++ G+ D+ P +
Sbjct: 61 QRLARMLQAESKLFELRRHGPMSINALSMLLSNLLWEYRI--FYIQVLVGGV-DKSGPKL 117
Query: 121 CTMDSIGAK 129
++D G +
Sbjct: 118 FSLDPAGGR 126
>sp|C5A2D5|PSB2_THEGJ Proteasome subunit beta 2 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB2 PE=3 SV=1
Length = 200
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 8 GSALVAMVGKNCFAIASDRR--LGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
G+ V + K +A+D + LG ++T+ + ++I I DR+ I +G D Q L +
Sbjct: 7 GTTTVGIKVKEGVVLAADTQASLGNMVETL--NIRKILPITDRIAITTAGSVGDVQALAR 64
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
L + + YQ R M A+L+S +L E ++ PY Q +I G DKP + ++D+
Sbjct: 65 MLEAQARYYQFTWGRPMTTRAMANLLSNILNENKWFPYMVQIIIGGYV--DKPELASVDA 122
Query: 126 IGA 128
+G
Sbjct: 123 LGG 125
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V +V +A+++R + + +++ +I DR+ + ++G D+Q L + +
Sbjct: 11 GTTTVGLVFAGGVILATEKRATMGYMIASKRAKKVYQIADRIGMTIAGGVGDAQQLARII 70
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
LYQ+R R++ ++L+S L + R+ PY+ Q ++ G+ D+ P + ++D++G
Sbjct: 71 TVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPYYVQLLVGGI-DDHGPSVYSVDAMG 129
Query: 128 A 128
Sbjct: 130 G 130
>sp|P34286|PSB1_CAEEL Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6
PE=1 SV=2
Length = 258
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQ-LQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQR 66
G + A+ G+N +ASD R+ + + D ++I ++D + + SG D L +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSI 126
L R Y+ DM + A L+S LY +RF PY+ ++AG+ + K + + D I
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPI 170
Query: 127 G 127
G
Sbjct: 171 G 171
>sp|B9LTS6|PSB_HALLT Proteasome subunit beta OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=psmB PE=3 SV=1
Length = 243
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + + +A+D R + + D Q++ ++H R + ++G + +Q L L
Sbjct: 49 GTTTVGIKTADGVVMATDMRASLGGMVSSKDVQKVEEVHPRGALTIAGSVSAAQNLISTL 108
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
LY+ R +DM E ++L LL F Y QP++ G+ DE I ++D++G
Sbjct: 109 KAETSLYETRRGKDMSMEALSTLTGNLLRSGAF--YIVQPILGGVDDE-GSHIYSIDALG 165
Query: 128 A 128
Sbjct: 166 G 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,537,285
Number of Sequences: 539616
Number of extensions: 2292771
Number of successful extensions: 6810
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 6645
Number of HSP's gapped (non-prelim): 183
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)