Query 030209
Match_columns 181
No_of_seqs 123 out of 1271
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 10:13:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 3.9E-43 8.5E-48 281.9 20.1 170 2-174 2-187 (212)
2 cd03759 proteasome_beta_type_3 100.0 8.6E-43 1.9E-47 276.4 20.3 166 6-174 1-174 (195)
3 cd03760 proteasome_beta_type_4 100.0 2.3E-41 5E-46 268.5 20.6 158 7-167 1-169 (197)
4 cd03761 proteasome_beta_type_5 100.0 1.3E-40 2.8E-45 262.6 21.0 163 9-173 1-168 (188)
5 TIGR03634 arc_protsome_B prote 100.0 2.4E-40 5.2E-45 259.9 20.8 157 8-168 1-163 (185)
6 cd03758 proteasome_beta_type_2 100.0 2.3E-40 4.9E-45 262.3 20.7 164 9-175 2-174 (193)
7 COG0638 PRE1 20S proteasome, a 100.0 2.6E-40 5.6E-45 269.5 20.2 162 5-167 27-196 (236)
8 cd03764 proteasome_beta_archea 100.0 1.9E-39 4.2E-44 255.5 20.7 156 9-168 1-162 (188)
9 TIGR03690 20S_bact_beta protea 100.0 3E-39 6.5E-44 260.5 21.0 159 7-168 1-170 (219)
10 cd03755 proteasome_alpha_type_ 100.0 1.7E-39 3.8E-44 259.7 19.2 159 4-163 23-191 (207)
11 cd03762 proteasome_beta_type_6 100.0 4.9E-39 1.1E-43 253.2 20.6 163 9-175 1-170 (188)
12 PTZ00488 Proteasome subunit be 100.0 9.4E-39 2E-43 261.9 21.6 168 4-173 35-207 (247)
13 cd03751 proteasome_alpha_type_ 100.0 3.9E-39 8.4E-44 258.8 18.7 165 4-171 26-198 (212)
14 cd03752 proteasome_alpha_type_ 100.0 9E-39 2E-43 256.6 19.7 162 4-165 25-196 (213)
15 cd03750 proteasome_alpha_type_ 100.0 7.6E-39 1.6E-43 259.3 19.1 159 4-167 23-191 (227)
16 cd01912 proteasome_beta protea 100.0 4.3E-38 9.3E-43 247.5 20.9 156 9-164 1-162 (189)
17 cd03763 proteasome_beta_type_7 100.0 5.1E-38 1.1E-42 247.8 20.8 161 9-174 1-168 (189)
18 cd03754 proteasome_alpha_type_ 100.0 1.8E-38 3.9E-43 255.3 18.3 160 5-165 26-199 (215)
19 cd03749 proteasome_alpha_type_ 100.0 8.1E-38 1.8E-42 250.8 19.2 161 4-169 23-193 (211)
20 cd01911 proteasome_alpha prote 100.0 1.2E-37 2.7E-42 249.1 19.1 159 4-163 23-191 (209)
21 cd03756 proteasome_alpha_arche 100.0 1.3E-37 2.8E-42 249.5 18.7 168 4-174 24-199 (211)
22 PTZ00246 proteasome subunit al 100.0 1.3E-37 2.7E-42 256.0 19.0 170 4-174 27-205 (253)
23 cd01906 proteasome_protease_Hs 100.0 4.9E-37 1.1E-41 239.4 20.0 156 9-164 1-164 (182)
24 TIGR03633 arc_protsome_A prote 100.0 4E-37 8.6E-42 248.7 19.0 168 4-174 25-200 (224)
25 PF00227 Proteasome: Proteasom 100.0 9.8E-37 2.1E-41 239.2 19.7 162 6-167 2-175 (190)
26 cd03753 proteasome_alpha_type_ 100.0 7.3E-37 1.6E-41 245.4 19.3 161 4-166 23-198 (213)
27 PRK03996 proteasome subunit al 100.0 1.1E-36 2.4E-41 248.6 18.9 165 4-173 32-206 (241)
28 cd03765 proteasome_beta_bacter 100.0 1.8E-36 3.8E-41 246.7 19.4 157 10-167 2-182 (236)
29 KOG0179 20S proteasome, regula 100.0 8E-36 1.7E-40 232.9 13.8 146 2-147 23-172 (235)
30 KOG0177 20S proteasome, regula 100.0 1.6E-35 3.5E-40 227.9 14.8 162 9-170 2-171 (200)
31 TIGR03691 20S_bact_alpha prote 100.0 1.5E-34 3.2E-39 234.5 18.5 153 4-164 23-187 (228)
32 KOG0176 20S proteasome, regula 100.0 1.1E-34 2.4E-39 224.9 14.9 163 4-171 30-207 (241)
33 KOG0185 20S proteasome, regula 100.0 1.2E-34 2.7E-39 229.5 13.7 169 5-176 38-219 (256)
34 KOG0178 20S proteasome, regula 100.0 6.9E-32 1.5E-36 211.1 14.2 159 5-163 28-197 (249)
35 KOG0182 20S proteasome, regula 100.0 4E-31 8.7E-36 206.9 16.3 165 6-171 34-207 (246)
36 KOG0181 20S proteasome, regula 100.0 8.8E-32 1.9E-36 208.3 11.9 164 4-170 28-199 (233)
37 KOG0175 20S proteasome, regula 100.0 1E-31 2.2E-36 215.4 12.5 158 5-163 68-231 (285)
38 KOG0174 20S proteasome, regula 100.0 1.4E-31 3E-36 207.1 12.2 165 4-169 15-185 (224)
39 KOG0184 20S proteasome, regula 100.0 5.3E-31 1.2E-35 207.5 15.3 149 3-153 29-185 (254)
40 KOG0180 20S proteasome, regula 100.0 1.6E-30 3.5E-35 197.9 16.1 155 1-155 1-160 (204)
41 PRK05456 ATP-dependent proteas 100.0 5.5E-30 1.2E-34 199.5 18.3 150 8-169 1-159 (172)
42 KOG0183 20S proteasome, regula 100.0 9.6E-31 2.1E-35 205.1 11.8 147 4-151 26-180 (249)
43 cd01913 protease_HslV Protease 100.0 5.4E-29 1.2E-33 193.2 17.4 147 9-167 1-156 (171)
44 cd01901 Ntn_hydrolase The Ntn 100.0 7.1E-28 1.5E-32 181.8 19.5 153 9-162 1-161 (164)
45 TIGR03692 ATP_dep_HslV ATP-dep 100.0 4.6E-28 1E-32 188.0 17.1 147 9-167 1-156 (171)
46 KOG0173 20S proteasome, regula 100.0 1.1E-28 2.4E-33 197.4 13.8 159 4-164 33-197 (271)
47 KOG0863 20S proteasome, regula 99.9 1.3E-25 2.9E-30 177.8 13.0 164 4-171 28-200 (264)
48 COG5405 HslV ATP-dependent pro 99.1 5.4E-10 1.2E-14 85.0 9.1 151 6-166 2-159 (178)
49 COG3484 Predicted proteasome-t 98.1 6.6E-05 1.4E-09 59.6 11.0 147 9-156 2-172 (255)
50 PF09894 DUF2121: Uncharacteri 64.6 5.1 0.00011 31.8 2.1 55 9-94 2-56 (194)
51 PF04539 Sigma70_r3: Sigma-70 39.2 62 0.0013 20.9 3.9 31 64-94 3-33 (78)
52 COG4079 Uncharacterized protei 36.2 26 0.00056 29.1 2.0 55 9-94 2-56 (293)
53 cd03067 PDI_b_PDIR_N PDIb fami 35.6 39 0.00085 24.3 2.5 40 34-73 7-46 (112)
54 KOG3361 Iron binding protein i 35.2 56 0.0012 24.6 3.4 46 121-166 71-120 (157)
55 COG0017 AsnS Aspartyl/asparagi 34.6 1.8E+02 0.0038 26.2 7.0 61 85-147 138-202 (435)
56 COG4537 ComGC Competence prote 24.7 1.4E+02 0.003 21.4 3.8 27 61-87 50-77 (107)
57 COG4990 Uncharacterized protei 24.3 54 0.0012 26.0 1.8 20 106-128 150-169 (195)
58 KOG4636 Uncharacterized conser 24.2 1.4E+02 0.0031 26.4 4.5 52 4-56 320-373 (483)
59 COG2096 cob(I)alamin adenosylt 24.0 1.6E+02 0.0035 23.2 4.5 38 60-97 125-162 (184)
60 PRK11508 sulfur transfer prote 23.5 1.9E+02 0.0042 20.8 4.4 36 56-95 39-74 (109)
61 PF01726 LexA_DNA_bind: LexA D 23.3 1.5E+02 0.0032 19.0 3.5 22 71-92 15-36 (65)
62 COG0282 ackA Acetate kinase [E 22.5 1.1E+02 0.0023 27.2 3.5 60 49-115 271-332 (396)
63 KOG3313 Molecular chaperone Pr 22.4 1E+02 0.0022 24.3 3.0 26 150-175 124-149 (187)
64 PRK07105 pyridoxamine kinase; 21.7 79 0.0017 25.9 2.5 28 38-65 3-30 (284)
65 COG4728 Uncharacterized protei 21.6 88 0.0019 22.5 2.3 30 42-71 10-39 (124)
66 PF08899 DUF1844: Domain of un 21.3 1E+02 0.0022 20.7 2.4 31 140-170 43-74 (74)
67 PF01242 PTPS: 6-pyruvoyl tetr 20.7 1.7E+02 0.0037 20.8 3.8 45 54-98 43-97 (123)
68 TIGR00636 PduO_Nterm ATP:cob(I 20.7 2E+02 0.0043 22.3 4.4 38 60-97 117-154 (171)
69 COG2920 DsrC Dissimilatory sul 20.4 1.9E+02 0.0041 20.8 3.8 33 59-95 44-76 (111)
70 PF01923 Cob_adeno_trans: Coba 20.1 1.8E+02 0.0039 22.0 4.0 39 59-97 119-157 (163)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-43 Score=281.85 Aligned_cols=170 Identities=28% Similarity=0.465 Sum_probs=154.9
Q ss_pred CcccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCC
Q 030209 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81 (181)
Q Consensus 2 ~~~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (181)
|||.++|+|+|||+++||||||+|++.+++.++.+++.+|||+|+++++++++|..||++.+.+++|.+++.|++++|.+
T Consensus 2 ~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~ 81 (212)
T cd03757 2 SPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKE 81 (212)
T ss_pred CCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCC
Confidence 79999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCC--------
Q 030209 82 MKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFM-------- 149 (181)
Q Consensus 82 i~~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~-------- 149 (181)
|+++.+|+++++++|++|.+||+|++||||||++++|+||++||+|++.+++++ |+.+++++||+.|+
T Consensus 82 i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 161 (212)
T cd03757 82 MSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVE 161 (212)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCC
Confidence 999999999999999988889999999999998778999999999999999987 89999999999874
Q ss_pred -CChhh--hhHHHhhhHHHHH-HHHHHhh
Q 030209 150 -VPVRQ--CSSLIWNPMSCLK-LYLKLCY 174 (181)
Q Consensus 150 -~~l~~--~~~l~~~~~~~~~-~~~~~~~ 174 (181)
++|++ |.+++. +|++ ...|+|.
T Consensus 162 ~~~ms~eea~~l~~---~~l~~~~~rd~~ 187 (212)
T cd03757 162 RTPLSLEEAVSLVK---DAFTSAAERDIY 187 (212)
T ss_pred CCCCCHHHHHHHHH---HHHHHHHHhCcc
Confidence 66775 455555 5555 3334554
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.6e-43 Score=276.45 Aligned_cols=166 Identities=55% Similarity=0.857 Sum_probs=149.5
Q ss_pred ccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHH
Q 030209 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (181)
Q Consensus 6 ~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~ 85 (181)
.+|+|+|||+++||||||+|++.+.+.++.+++.+|||+|++|++++++|..||++.+++++|.+++.|+++++.+|+++
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 36999999999999999999999998877788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecC-cc----chhhHHHHHHhhCCCChhh--hhHH
Q 030209 86 TFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGS-LQ----KILLLLELLESLFMVPVRQ--CSSL 158 (181)
Q Consensus 86 ~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~-~~----g~~~~~~~Le~~~~~~l~~--~~~l 158 (181)
.+|++|++++|++|.+||+|++||||||++++|+||++||+|++..++ ++ |+++++++||+.|+++|++ +.++
T Consensus 81 ~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 160 (195)
T cd03759 81 TFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFET 160 (195)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999999999888999999999999987789999999999998886 64 8999999999999999886 4455
Q ss_pred HhhhHHHHH-HHHHHhh
Q 030209 159 IWNPMSCLK-LYLKLCY 174 (181)
Q Consensus 159 ~~~~~~~~~-~~~~~~~ 174 (181)
+. +|++ ...|+|.
T Consensus 161 ~~---~~l~~~~~rd~~ 174 (195)
T cd03759 161 IS---QALLSAVDRDAL 174 (195)
T ss_pred HH---HHHHHHHhhCcc
Confidence 55 5555 3334543
No 3
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-41 Score=268.55 Aligned_cols=158 Identities=25% Similarity=0.373 Sum_probs=145.4
Q ss_pred cCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHH-HhhhhhCCCCCHH
Q 030209 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHK-LYQLREERDMKPE 85 (181)
Q Consensus 7 ~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~~i~~~ 85 (181)
+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..+|++.+++++|.+++ .|+++++.+|+++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999998999999999999999999999999999999999999999987 5778899999999
Q ss_pred HHHHHHHHHHHhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC--Chhh--h
Q 030209 86 TFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV--PVRQ--C 155 (181)
Q Consensus 86 ~la~~is~~ly~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~--~l~~--~ 155 (181)
.+|+++++++|++| +|||+|++||||||++++|+||++||+|++.+++++ |+.+++++||+.|++ +|+. +
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 99999999999885 899999999999997678999999999999999987 889999999999998 8875 4
Q ss_pred hHHHhhhHHHHH
Q 030209 156 SSLIWNPMSCLK 167 (181)
Q Consensus 156 ~~l~~~~~~~~~ 167 (181)
.+++. +|++
T Consensus 161 ~~l~~---~~l~ 169 (197)
T cd03760 161 RALIE---ECMK 169 (197)
T ss_pred HHHHH---HHHH
Confidence 44555 5555
No 4
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-40 Score=262.63 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=147.5
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++++++|..||++.+++++|.+++.|++++|.+|+++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhhhhHHHhhhHH
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQCSSLIWNPMS 164 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~~~~l~~~~~~ 164 (181)
+++++++|.+|..||+|++||||||+ .||+||++||+|++.+++++ |+.+++++||+.|+++|+++| .++.+++
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ee-a~~l~~~ 158 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEE-AYDLARR 158 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHH-HHHHHHH
Confidence 99999999998889999999999996 47999999999999999987 889999999999999988633 2333445
Q ss_pred HHHHHH-HHh
Q 030209 165 CLKLYL-KLC 173 (181)
Q Consensus 165 ~~~~~~-~~~ 173 (181)
|++... |+|
T Consensus 159 ~l~~~~~rd~ 168 (188)
T cd03761 159 AIYHATHRDA 168 (188)
T ss_pred HHHHHHHhcc
Confidence 565333 344
No 5
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.4e-40 Score=259.91 Aligned_cols=157 Identities=24% Similarity=0.391 Sum_probs=146.6
Q ss_pred CceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHH
Q 030209 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (181)
Q Consensus 8 g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~l 87 (181)
|+|+|||+++||||||+|++.+.+.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|+++++.+++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHhh
Q 030209 88 ASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIWN 161 (181)
Q Consensus 88 a~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~ 161 (181)
|+++++++|.+++|||+|++||||||++ ||+||++||+|++.+++++ |+.+++++||+.|+++|+. +.+++.
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~- 158 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEE-GPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAV- 158 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCC-CCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHH-
Confidence 9999999998889999999999999975 6999999999999999987 8899999999999998875 455555
Q ss_pred hHHHHHH
Q 030209 162 PMSCLKL 168 (181)
Q Consensus 162 ~~~~~~~ 168 (181)
+|++.
T Consensus 159 --~~l~~ 163 (185)
T TIGR03634 159 --RAIKS 163 (185)
T ss_pred --HHHHH
Confidence 55553
No 6
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-40 Score=262.29 Aligned_cols=164 Identities=21% Similarity=0.350 Sum_probs=147.5
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..||++.+++++|.+++.|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-c-CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHh
Q 030209 89 SLVSALLYEK-R-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIW 160 (181)
Q Consensus 89 ~~is~~ly~~-r-~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~ 160 (181)
+++++++|.+ | .|||+|++||+|||++++|+||++||+|++.+++++ |+.+++++||+.|+++|+. +.+++.
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~ 161 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMK 161 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 9999999643 3 379999999999997678999999999999999987 9999999999999998885 445554
Q ss_pred hhHHHHH-HHHHHhhh
Q 030209 161 NPMSCLK-LYLKLCYH 175 (181)
Q Consensus 161 ~~~~~~~-~~~~~~~~ 175 (181)
++++ ...|+|..
T Consensus 162 ---~a~~~~~~rd~~~ 174 (193)
T cd03758 162 ---KCIKELKKRFIIN 174 (193)
T ss_pred ---HHHHHHHHhcccc
Confidence 5555 34446643
No 7
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-40 Score=269.53 Aligned_cols=162 Identities=24% Similarity=0.344 Sum_probs=149.8
Q ss_pred cccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 030209 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (181)
Q Consensus 5 ~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~ 84 (181)
...|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+||++|+++|+.+|++.+++++|.+++.|++.++++|++
T Consensus 27 ~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v 106 (236)
T COG0638 27 KRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISV 106 (236)
T ss_pred HcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccC--CccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChh--hhh
Q 030209 85 ETFASLVSALLYEKRF--GPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVR--QCS 156 (181)
Q Consensus 85 ~~la~~is~~ly~~r~--rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~--~~~ 156 (181)
+.+++++++++|.++. |||+|+++|||+|+ ++|+||++||+|++.+++++ |+.+++++||+.|+++|+ |+.
T Consensus 107 ~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai 185 (236)
T COG0638 107 EALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAI 185 (236)
T ss_pred HHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHH
Confidence 9999999999998876 99999999999998 78999999999999999887 889999999999999877 466
Q ss_pred HHHhhhHHHHH
Q 030209 157 SLIWNPMSCLK 167 (181)
Q Consensus 157 ~l~~~~~~~~~ 167 (181)
+++.+++..+-
T Consensus 186 ~la~~al~~a~ 196 (236)
T COG0638 186 ELAVKALRAAI 196 (236)
T ss_pred HHHHHHHHHHH
Confidence 77775555443
No 8
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-39 Score=255.48 Aligned_cols=156 Identities=23% Similarity=0.405 Sum_probs=145.3
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++++++|..+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHhhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIWNP 162 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~~ 162 (181)
+++++++|.+++|||+|++||||||+ ++|+||.+||+|++.+++++ |+.+++++||+.|+++|+. +.+++.
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~-- 157 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAI-- 157 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHH--
Confidence 99999999988999999999999997 67999999999999999987 8899999999999998775 445544
Q ss_pred HHHHHH
Q 030209 163 MSCLKL 168 (181)
Q Consensus 163 ~~~~~~ 168 (181)
++++.
T Consensus 158 -~~l~~ 162 (188)
T cd03764 158 -RAIKS 162 (188)
T ss_pred -HHHHH
Confidence 55553
No 9
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=3e-39 Score=260.54 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=144.1
Q ss_pred cCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHH
Q 030209 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (181)
Q Consensus 7 ~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~ 86 (181)
+|+|+|||+++||||||+|++.++|.++.+++.+|||+|+++++++++|..+|++.+.+++|.+++.|+++++.+|+++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---cCCccceEEEEEEEcCC-CCcEEEEECCCC-ceeecCcc----chhhHHHHHHhhCCCChhh--h
Q 030209 87 FASLVSALLYEK---RFGPYFCQPVIAGLSDE-DKPFICTMDSIG-AKYVGSLQ----KILLLLELLESLFMVPVRQ--C 155 (181)
Q Consensus 87 la~~is~~ly~~---r~rP~~vs~ii~G~D~~-~~p~Ly~iD~~G-~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~ 155 (181)
+|++|++++|.+ .+|||+|++||||||++ ++|+||++||+| ++..++++ |+++++++||+.|+++|+. +
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 999999999765 38999999999999974 689999999999 57777766 8899999999999999886 4
Q ss_pred hHHHhhhHHHHHH
Q 030209 156 SSLIWNPMSCLKL 168 (181)
Q Consensus 156 ~~l~~~~~~~~~~ 168 (181)
.+++. ++++.
T Consensus 161 i~l~~---~al~~ 170 (219)
T TIGR03690 161 LRVAV---EALYD 170 (219)
T ss_pred HHHHH---HHHHH
Confidence 44444 55543
No 10
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-39 Score=259.68 Aligned_cols=159 Identities=17% Similarity=0.306 Sum_probs=144.3
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+.++|+|+|||+++||||+|+|++.+. .++.+++.+|||+|+++++++++|..+|++.+.+++|.+++.|+++++++|+
T Consensus 23 av~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (207)
T cd03755 23 AVRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVT 101 (207)
T ss_pred HHHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 457899999999999999999998765 5777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh-
Q 030209 84 PETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 84 ~~~la~~is~~l--y~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++.+++++++++ |+++ +|||+|++||+|||++++|+||++||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 102 ~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~e 181 (207)
T cd03755 102 VEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRD 181 (207)
T ss_pred HHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHH
Confidence 999999999999 5554 799999999999998778999999999999999887 8899999999999999875
Q ss_pred -hhHHHhhhH
Q 030209 155 -CSSLIWNPM 163 (181)
Q Consensus 155 -~~~l~~~~~ 163 (181)
+.+++.+++
T Consensus 182 eai~l~~~~l 191 (207)
T cd03755 182 DTIKLAIKAL 191 (207)
T ss_pred HHHHHHHHHH
Confidence 455555433
No 11
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-39 Score=253.20 Aligned_cols=163 Identities=13% Similarity=0.187 Sum_probs=147.8
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|+++++.+++++.+|
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHhhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIWNP 162 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~~ 162 (181)
+++++++|.+| |||+|++||||||++.+|+||++||+|++.+++++ |+.+++++||+.|+++|+. +.+++.
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~-- 157 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVK-- 157 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHH--
Confidence 99999999875 79999999999997668999999999999999887 7799999999999998775 556655
Q ss_pred HHHHH-HHHHHhhh
Q 030209 163 MSCLK-LYLKLCYH 175 (181)
Q Consensus 163 ~~~~~-~~~~~~~~ 175 (181)
+|++ ...|+|..
T Consensus 158 -~al~~~~~rd~~~ 170 (188)
T cd03762 158 -NALSLAMSRDGSS 170 (188)
T ss_pred -HHHHHHHHhcccc
Confidence 5555 33446643
No 12
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=9.4e-39 Score=261.90 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=149.0
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..+|++.+++++|.+++.|++++|.+|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhhhhHHH
Q 030209 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQCSSLI 159 (181)
Q Consensus 84 ~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~~~~l~ 159 (181)
++.+|++|++++|.+|..|+.+++||||||++ ||+||++||+|++.+++++ |+.+++++||+.|+++|++.| .+
T Consensus 115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~-gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eE-ai 192 (247)
T PTZ00488 115 VAAASKILANIVWNYKGMGLSMGTMICGWDKK-GPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEE-AQ 192 (247)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCC-CCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHH-HH
Confidence 99999999999998875566677899999965 6999999999999999887 899999999999999988633 23
Q ss_pred hhhHHHHHH-HHHHh
Q 030209 160 WNPMSCLKL-YLKLC 173 (181)
Q Consensus 160 ~~~~~~~~~-~~~~~ 173 (181)
+.+++|++. ..|++
T Consensus 193 ~l~~kal~~~~~Rd~ 207 (247)
T PTZ00488 193 DLGRRAIYHATFRDA 207 (247)
T ss_pred HHHHHHHHHHHHhcc
Confidence 334455553 33354
No 13
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-39 Score=258.80 Aligned_cols=165 Identities=14% Similarity=0.151 Sum_probs=147.0
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+.++|+|+|||+++||||||+|++.+. .++.+++.+|||+|++|++++++|..+|++.+++++|.+++.|++++|.+++
T Consensus 26 a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~ 104 (212)
T cd03751 26 AVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIP 104 (212)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 457899999999999999999999986 6666778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--c--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhhh
Q 030209 84 PETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQC 155 (181)
Q Consensus 84 ~~~la~~is~~ly~--~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~~ 155 (181)
++.++++|+++++. + .+|||+|++||+|||++ ||+||++||+|++.+++++ |+.+++++||+.|+++|+++
T Consensus 105 v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~-gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~e 183 (212)
T cd03751 105 VKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD-GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCR 183 (212)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC-cCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHH
Confidence 99999999998744 3 37999999999999954 7999999999999999987 88999999999999999876
Q ss_pred hHHHhhhHHHHHHHHH
Q 030209 156 SSLIWNPMSCLKLYLK 171 (181)
Q Consensus 156 ~~l~~~~~~~~~~~~~ 171 (181)
|+ +..+++++++..+
T Consensus 184 ea-i~l~~~~L~~~~~ 198 (212)
T cd03751 184 EA-VKEAAKIIYIVHD 198 (212)
T ss_pred HH-HHHHHHHHHHHhh
Confidence 54 4445566655544
No 14
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9e-39 Score=256.57 Aligned_cols=162 Identities=14% Similarity=0.166 Sum_probs=146.3
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
..++|+|+|||+++||||||+|++.+.+.++.+++.+|||+|++++++++||..+|++.+.+++|.+++.|++++|++|+
T Consensus 25 a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 104 (213)
T cd03752 25 AISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIP 104 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45789999999999999999999999887777779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhc--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh-
Q 030209 84 PETFASLVSALL--YEK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 84 ~~~la~~is~~l--y~~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++.+|++|+..+ |++ +.|||+|++||+|||++.||+||.+||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 105 v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~e 184 (213)
T cd03752 105 VEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLE 184 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHH
Confidence 999999999986 443 4789999999999997678999999999999999887 8899999999999999886
Q ss_pred -hhHHHhhhHHH
Q 030209 155 -CSSLIWNPMSC 165 (181)
Q Consensus 155 -~~~l~~~~~~~ 165 (181)
+.+++.+++..
T Consensus 185 ea~~l~~~al~~ 196 (213)
T cd03752 185 EALALAVKVLSK 196 (213)
T ss_pred HHHHHHHHHHHH
Confidence 44555544433
No 15
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.6e-39 Score=259.34 Aligned_cols=159 Identities=14% Similarity=0.229 Sum_probs=144.8
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+.++|+|+|||+++||||||+|++.+ +.++.+++.+||++|+++++|+++|..+|++.+++++|.+++.|++++|.+|+
T Consensus 23 av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 101 (227)
T cd03750 23 AVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIP 101 (227)
T ss_pred HHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45789999999999999999999998 57888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh-
Q 030209 84 PETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 84 ~~~la~~is~~l--y~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++.++++|++++ |+++ .|||+|++||+|||++ ||+||++||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 102 v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~e 180 (227)
T cd03750 102 VSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELE 180 (227)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHH
Confidence 999999999998 5544 7999999999999965 7999999999999999887 8899999999999998875
Q ss_pred -hhHHHhhhHHHHH
Q 030209 155 -CSSLIWNPMSCLK 167 (181)
Q Consensus 155 -~~~l~~~~~~~~~ 167 (181)
+.+++. +|++
T Consensus 181 eai~l~~---~~l~ 191 (227)
T cd03750 181 DAIHTAI---LTLK 191 (227)
T ss_pred HHHHHHH---HHHH
Confidence 445555 5555
No 16
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-38 Score=247.46 Aligned_cols=156 Identities=24% Similarity=0.446 Sum_probs=145.3
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|++.+.+..+.+++.+|||+|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999888799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChh--hhhHHHhhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVR--QCSSLIWNP 162 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~--~~~~l~~~~ 162 (181)
+++++++|.++.|||++++||||||++++|+||.+||+|++.+++++ |+++++++||+.|+++|+ ++.+++.++
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~ 160 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKA 160 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 99999999987789999999999998678999999999999999987 889999999999999877 466666644
Q ss_pred HH
Q 030209 163 MS 164 (181)
Q Consensus 163 ~~ 164 (181)
+.
T Consensus 161 l~ 162 (189)
T cd01912 161 ID 162 (189)
T ss_pred HH
Confidence 43
No 17
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-38 Score=247.80 Aligned_cols=161 Identities=15% Similarity=0.196 Sum_probs=145.7
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++++++|..+|++.+.+++|.+++.|+++++++++++.+|
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHhhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIWNP 162 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~~ 162 (181)
++|++.+|.++ .||+|++||||||++ ||+||++||+|++.+++++ |+.+++++||+.|+++|+. +.+++.
T Consensus 81 ~~l~~~l~~~~-~p~~v~~ivaG~d~~-g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~-- 156 (189)
T cd03763 81 TMLKQHLFRYQ-GHIGAALVLGGVDYT-GPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVC-- 156 (189)
T ss_pred HHHHHHHHHcC-CccceeEEEEeEcCC-CCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHH--
Confidence 99999998764 499999999999965 6999999999999999987 8899999999999999875 445555
Q ss_pred HHHHH-HHHHHhh
Q 030209 163 MSCLK-LYLKLCY 174 (181)
Q Consensus 163 ~~~~~-~~~~~~~ 174 (181)
+|++ ...|+|.
T Consensus 157 -~~l~~~~~rd~~ 168 (189)
T cd03763 157 -EAIEAGIFNDLG 168 (189)
T ss_pred -HHHHHHHHhcCc
Confidence 5555 3345654
No 18
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-38 Score=255.33 Aligned_cols=160 Identities=16% Similarity=0.254 Sum_probs=141.0
Q ss_pred cccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 030209 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (181)
Q Consensus 5 ~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~ 84 (181)
.++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+++++|++||+.+|++.+.+++|.++..|+++++++|++
T Consensus 26 ~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v 104 (215)
T cd03754 26 KNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPV 104 (215)
T ss_pred hcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 456889999999999999999999864 5555688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--HHhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCC--h--
Q 030209 85 ETFASLVSAL--LYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVP--V-- 152 (181)
Q Consensus 85 ~~la~~is~~--ly~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~--l-- 152 (181)
+.+|++++++ +|+++ .|||+|++||||||+++||+||++||+|++.+++++ |+.+++++||+.|+++ |
T Consensus 105 ~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~ 184 (215)
T cd03754 105 DVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIE 184 (215)
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCC
Confidence 9999999997 56664 689999999999998778999999999999999887 8899999999998884 4
Q ss_pred h--hhhHHHhhhHHH
Q 030209 153 R--QCSSLIWNPMSC 165 (181)
Q Consensus 153 ~--~~~~l~~~~~~~ 165 (181)
+ |+.+++.+++..
T Consensus 185 s~eeai~l~~~al~~ 199 (215)
T cd03754 185 SYEETVELAISCLQT 199 (215)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3 345555544433
No 19
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-38 Score=250.84 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=142.1
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+.++|+|+|||+++||||||+|+|.+.+ + .++.+|||+|++++++++||..+|++.+.+++|.+++.|+++++.+|+
T Consensus 23 av~~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 99 (211)
T cd03749 23 AVKQGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIP 99 (211)
T ss_pred HHhcCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4568999999999999999999998764 2 456799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--c--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCC--CChh
Q 030209 84 PETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFM--VPVR 153 (181)
Q Consensus 84 ~~~la~~is~~ly~--~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~--~~l~ 153 (181)
++.+|++++++++. + +.|||+|++||+|||++ ||+||++||+|++.+++++ |+.+++++||++|+ ++|+
T Consensus 100 v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~-gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms 178 (211)
T cd03749 100 VSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES-GPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCS 178 (211)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC-CCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCC
Confidence 99999999998753 3 47899999999999965 7999999999999999887 88999999999988 4777
Q ss_pred hhhHHHhhhHHHHHHH
Q 030209 154 QCSSLIWNPMSCLKLY 169 (181)
Q Consensus 154 ~~~~l~~~~~~~~~~~ 169 (181)
+.| +++.+++.++..
T Consensus 179 ~ee-~i~~~~~~l~~~ 193 (211)
T cd03749 179 LEE-LIKHALRALRET 193 (211)
T ss_pred HHH-HHHHHHHHHHHH
Confidence 654 555566666644
No 20
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.2e-37 Score=249.14 Aligned_cols=159 Identities=19% Similarity=0.290 Sum_probs=143.6
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
..++|+|+||++++|||++|+|++.+.+ ++..++.+|||+|+++++++++|..+|++.+.+.++.++..|++++|.+|+
T Consensus 23 ~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~ 101 (209)
T cd01911 23 AVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIP 101 (209)
T ss_pred HHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4578999999999999999999999864 566789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhc--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh-
Q 030209 84 PETFASLVSALL--YEK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 84 ~~~la~~is~~l--y~~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++.+|+++++++ |++ +.|||+|++||+|||++++|+||.+||.|++.+++++ |+.+++++||+.|+++|+.
T Consensus 102 ~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ 181 (209)
T cd01911 102 VEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLE 181 (209)
T ss_pred HHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHH
Confidence 999999999988 444 3789999999999998778999999999999999887 8899999999999999875
Q ss_pred -hhHHHhhhH
Q 030209 155 -CSSLIWNPM 163 (181)
Q Consensus 155 -~~~l~~~~~ 163 (181)
+.+++.+++
T Consensus 182 ea~~l~~~~l 191 (209)
T cd01911 182 EAIKLALKAL 191 (209)
T ss_pred HHHHHHHHHH
Confidence 445555333
No 21
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-37 Score=249.49 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=148.0
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||+|+|++.+ +.++.+++.+|||+|++++++++||..+|++.+.++++.+++.|+++++.+++
T Consensus 24 av~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 102 (211)
T cd03756 24 AVKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPID 102 (211)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45789999999999999999999997 56777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--c--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhhh
Q 030209 84 PETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQC 155 (181)
Q Consensus 84 ~~~la~~is~~ly~--~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~~ 155 (181)
++.+|+++++.++. + ++|||+|++||+|||++ +|+||++||+|++.+++++ |+.+++++||+.|+++|+..
T Consensus 103 ~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~-~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ 181 (211)
T cd03756 103 VEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLE 181 (211)
T ss_pred HHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC-CCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHH
Confidence 99999999998743 3 47999999999999964 7999999999999999887 88999999999999988753
Q ss_pred hHHHhhhHHHHHHHHHHhh
Q 030209 156 SSLIWNPMSCLKLYLKLCY 174 (181)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~ 174 (181)
| .++.+++|++...+++.
T Consensus 182 e-a~~l~~~~l~~~~~~~~ 199 (211)
T cd03756 182 E-AIELALKALYAALEENE 199 (211)
T ss_pred H-HHHHHHHHHHHHhcccC
Confidence 3 23334466666666553
No 22
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.3e-37 Score=255.96 Aligned_cols=170 Identities=14% Similarity=0.120 Sum_probs=148.4
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+.++|+|+|||+++||||||+|++.+++.++.+++.+|||+|+++++++++|..+|++.+.+++|.+++.|+++++.+++
T Consensus 27 av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 106 (253)
T PTZ00246 27 AINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQP 106 (253)
T ss_pred HHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45789999999999999999999999988877778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hc--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhhh
Q 030209 84 PETFASLVSALLY--EK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQC 155 (181)
Q Consensus 84 ~~~la~~is~~ly--~~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~~ 155 (181)
++.+++.++..++ ++ ++|||+|++||+|||+++||+||++||+|++.+++++ |+.+++++||+.|+++|+..
T Consensus 107 v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~e 186 (253)
T PTZ00246 107 VEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLE 186 (253)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHH
Confidence 9999999999864 33 4799999999999997678999999999999999877 88999999999999998753
Q ss_pred hHHHhhhHHHHHHH-HHHhh
Q 030209 156 SSLIWNPMSCLKLY-LKLCY 174 (181)
Q Consensus 156 ~~l~~~~~~~~~~~-~~~~~ 174 (181)
| .++.+++|++.. .++|.
T Consensus 187 e-ai~l~~~al~~~~~~d~~ 205 (253)
T PTZ00246 187 Q-GLLLAAKVLTKSMDSTSP 205 (253)
T ss_pred H-HHHHHHHHHHHHHhccCC
Confidence 2 233344555532 33544
No 23
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=4.9e-37 Score=239.42 Aligned_cols=156 Identities=28% Similarity=0.412 Sum_probs=143.8
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++|||++|+|++.+.+....+++.+|||+|+++++++++|..+|++.+.++++.++..|+++++.+++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999998887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC--CccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHh
Q 030209 89 SLVSALLYEKRF--GPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIW 160 (181)
Q Consensus 89 ~~is~~ly~~r~--rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~ 160 (181)
+++++++|.++. |||++++++||||++++|+||.+||+|++.+++++ |+.+++++||+.|+++|+. +.+++.
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~ 160 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELAL 160 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 999999998864 99999999999998678999999999999999887 8899999999999998764 555555
Q ss_pred hhHH
Q 030209 161 NPMS 164 (181)
Q Consensus 161 ~~~~ 164 (181)
+++.
T Consensus 161 ~~l~ 164 (182)
T cd01906 161 KALK 164 (182)
T ss_pred HHHH
Confidence 4433
No 24
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=4e-37 Score=248.69 Aligned_cols=168 Identities=21% Similarity=0.230 Sum_probs=148.5
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+.++|+|+|||+++||||+|+|+|.+ +.++.+++.+||++|++++++++||..+|++.+.++++.++..|+++++.+++
T Consensus 25 av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 103 (224)
T TIGR03633 25 AVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPID 103 (224)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45789999999999999999999998 56777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hc--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhhh
Q 030209 84 PETFASLVSALLY--EK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQC 155 (181)
Q Consensus 84 ~~~la~~is~~ly--~~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~~ 155 (181)
++.+|++++++++ .+ +.|||+|++||+|+|+ ++|+||++||+|++.+++++ |+.+++++||+.|+++|+..
T Consensus 104 ~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~e 182 (224)
T TIGR03633 104 VETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLD 182 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHH
Confidence 9999999999984 34 3789999999999995 57999999999999999887 88999999999999988753
Q ss_pred hHHHhhhHHHHHHHHHHhh
Q 030209 156 SSLIWNPMSCLKLYLKLCY 174 (181)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~ 174 (181)
| .++-+++|++...++|.
T Consensus 183 e-ai~l~~~al~~~~~d~~ 200 (224)
T TIGR03633 183 E-AIELALKALYSAVEDKL 200 (224)
T ss_pred H-HHHHHHHHHHHHhcccC
Confidence 3 33444466666666554
No 25
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=9.8e-37 Score=239.20 Aligned_cols=162 Identities=25% Similarity=0.417 Sum_probs=143.8
Q ss_pred ccCceEEEEEeCCEEEEeEeCCcccCceeecCC-cCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 030209 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (181)
Q Consensus 6 ~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~-~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~ 84 (181)
++|+|+|||+++|||++|+|++.++|..+..++ .+|||+|+++++++++|..+|++.+.++++.+++.|++.++.++++
T Consensus 2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 81 (190)
T PF00227_consen 2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISP 81 (190)
T ss_dssp HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCH
T ss_pred CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccc
Confidence 589999999999999999999999888886666 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----HhccCCccceEEEEEEEcCCCCcEEEEECCCCceeec-Ccc----chhhHHHHHHhhCCCChh--
Q 030209 85 ETFASLVSALL----YEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVG-SLQ----KILLLLELLESLFMVPVR-- 153 (181)
Q Consensus 85 ~~la~~is~~l----y~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~-~~~----g~~~~~~~Le~~~~~~l~-- 153 (181)
+.+++.+++.+ +..++||++++++++|||++++|+||.+||+|++.++ +++ |+.+++++||+.|+++|+
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ 161 (190)
T PF00227_consen 82 EYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLE 161 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHH
T ss_pred hhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHH
Confidence 97777777665 3345899999999999998878999999999999999 577 889999999999988877
Q ss_pred hhhHHHhhhHHHHH
Q 030209 154 QCSSLIWNPMSCLK 167 (181)
Q Consensus 154 ~~~~l~~~~~~~~~ 167 (181)
|+.+++.++++.+.
T Consensus 162 ea~~~~~~~l~~~~ 175 (190)
T PF00227_consen 162 EAIELALKALKEAI 175 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677775555444
No 26
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.3e-37 Score=245.42 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=144.5
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||+|+|++.+. .++..++.+||++|+++++++++|..+|++.+.+++|.+++.|++++|++|+
T Consensus 23 a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (213)
T cd03753 23 AIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMT 101 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 457899999999999999999999985 5667788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--c-------CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC
Q 030209 84 PETFASLVSALLYEK--R-------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV 150 (181)
Q Consensus 84 ~~~la~~is~~ly~~--r-------~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~ 150 (181)
++.+++++++++|.+ + .|||+|++||+|||+ +||+||.+||+|++.+++++ |+++++++||++|++
T Consensus 102 ~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~ 180 (213)
T cd03753 102 VESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHK 180 (213)
T ss_pred HHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccC
Confidence 999999999998652 1 489999999999996 47999999999999999887 889999999999999
Q ss_pred Chh--hhhHHHhhhHHHH
Q 030209 151 PVR--QCSSLIWNPMSCL 166 (181)
Q Consensus 151 ~l~--~~~~l~~~~~~~~ 166 (181)
+|+ |+.+++.+++..+
T Consensus 181 ~ls~eeai~l~~~~l~~~ 198 (213)
T cd03753 181 DMTLEEAEKLALSILKQV 198 (213)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 876 4667776555443
No 27
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.1e-36 Score=248.63 Aligned_cols=165 Identities=19% Similarity=0.213 Sum_probs=146.6
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+.++|+|+|||+++||||+|+|++.+ +.++..++.+|||+|+++++++++|..+|++.++++++.+++.|+++++.+++
T Consensus 32 av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 110 (241)
T PRK03996 32 AVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIG 110 (241)
T ss_pred HHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45789999999999999999999998 56777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hc--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh-
Q 030209 84 PETFASLVSALLY--EK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 84 ~~~la~~is~~ly--~~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++.+|+++++.++ ++ +.|||+|++||||||++ ||+||++||+|++.+++++ |+++++++||+.|+++|+.
T Consensus 111 ~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~-gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~e 189 (241)
T PRK03996 111 VETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLE 189 (241)
T ss_pred HHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC-cCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHH
Confidence 9999999999984 33 37899999999999964 6999999999999999887 8899999999999998775
Q ss_pred -hhHHHhhhHHHHHHHHHHh
Q 030209 155 -CSSLIWNPMSCLKLYLKLC 173 (181)
Q Consensus 155 -~~~l~~~~~~~~~~~~~~~ 173 (181)
+.+++. +|++...+++
T Consensus 190 eai~l~~---~al~~~~~~~ 206 (241)
T PRK03996 190 EAIELAL---KALAKANEGK 206 (241)
T ss_pred HHHHHHH---HHHHHHhccC
Confidence 455555 5555444443
No 28
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-36 Score=246.66 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=136.1
Q ss_pred eEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEec----CcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCC-CCCH
Q 030209 10 ALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIH----DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER-DMKP 84 (181)
Q Consensus 10 TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~-~i~~ 84 (181)
=+|||+++||||||+|+|.+.+... .++.+|||+|+ +|++|+.||..||++.+++++|.+++.|++++|. ++++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~-~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDN-ISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCcc-ccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 4799999999999999998876444 44789999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHh---c-c------CCccceEEEEEEEcCCCCcEEEEECCCCceeecC----c-c--chhhHHHHHHhh
Q 030209 85 ETFASLVSALLYE---K-R------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGS----L-Q--KILLLLELLESL 147 (181)
Q Consensus 85 ~~la~~is~~ly~---~-r------~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~----~-~--g~~~~~~~Le~~ 147 (181)
+.+|+++++++++ + + .|||+|++||||||++.||+||++||+|++.+++ | + ++.+++++||+.
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~~~~a~~~Lek~ 160 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGETKYGKPILDRV 160 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCCchhhHHHHHHh
Confidence 9999999998643 1 2 4899999999999976789999999999999994 3 3 778999999999
Q ss_pred CCCChhh--hhHHHhhhHHHHH
Q 030209 148 FMVPVRQ--CSSLIWNPMSCLK 167 (181)
Q Consensus 148 ~~~~l~~--~~~l~~~~~~~~~ 167 (181)
|+++|++ +.+++.+++..+.
T Consensus 161 yk~~ms~eeai~la~~al~~a~ 182 (236)
T cd03765 161 ITPDTSLEDAAKCALVSMDSTM 182 (236)
T ss_pred cCCCCCHHHHHHHHHHHHHHHH
Confidence 9999875 5566665554443
No 29
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-36 Score=232.87 Aligned_cols=146 Identities=27% Similarity=0.441 Sum_probs=142.3
Q ss_pred CcccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCC
Q 030209 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81 (181)
Q Consensus 2 ~~~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (181)
|||+++|+|++||++.|+.|+|+|+|.+.|..|.+++.+|||+++|+++++.+|+.||...|...++.+...|++++...
T Consensus 23 ~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ 102 (235)
T KOG0179|consen 23 SPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKK 102 (235)
T ss_pred CccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhh
Q 030209 82 MKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESL 147 (181)
Q Consensus 82 i~~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~ 147 (181)
|++..+|++|+.++|.+|++||.+..||+|+|++|++.+|++||.|++....|. |+.+++|+||..
T Consensus 103 ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQ 172 (235)
T KOG0179|consen 103 MSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQ 172 (235)
T ss_pred ccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999998776 778999999977
No 30
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=227.90 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=152.1
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
.|++||++.|+|++|+|+..+++.++.+++.+|++++++++.++++|..+|..++.+++..++++|+.++|.++||+.+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-c-CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHh
Q 030209 89 SLVSALLYEK-R-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIW 160 (181)
Q Consensus 89 ~~is~~ly~~-r-~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~ 160 (181)
|++++.+.+. | .+||.|++++||||++.||.||++|..|+..+.+++ |++|+.++||++|+++||+ |.++..
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmk 161 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMK 161 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHH
Confidence 9999999876 6 789999999999999888999999999999999988 9999999999999999996 457777
Q ss_pred hhHHHHHHHH
Q 030209 161 NPMSCLKLYL 170 (181)
Q Consensus 161 ~~~~~~~~~~ 170 (181)
+++..+|.+.
T Consensus 162 KCv~El~kRl 171 (200)
T KOG0177|consen 162 KCVLELKKRL 171 (200)
T ss_pred HHHHHHHHhc
Confidence 7777776553
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.5e-34 Score=234.54 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=133.2
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhC-CCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDM 82 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~i 82 (181)
+.++|+|+|||+++||||||+|++ +++.+|||+|+||++|+++|..+|++.++++++.+++.|++.++ .++
T Consensus 23 av~~g~T~VGIk~kdgVVLaaek~--------~~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~ 94 (228)
T TIGR03691 23 GIARGRSVVVLTYADGILFVAENP--------SRSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDV 94 (228)
T ss_pred HHHcCCcEEEEEeCCeEEEEEecC--------CCCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 346799999999999999999996 24689999999999999999999999999999999999999998 689
Q ss_pred CHHHHHHHHHHHHHhc---cCCccceEEEEEEEcC-CCCcEEEEECCCCceeecC-cc----chhhHHHHHHhhCCCChh
Q 030209 83 KPETFASLVSALLYEK---RFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKYVGS-LQ----KILLLLELLESLFMVPVR 153 (181)
Q Consensus 83 ~~~~la~~is~~ly~~---r~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~~~~-~~----g~~~~~~~Le~~~~~~l~ 153 (181)
+++.+|+.+++.++.. +.|||+|++|++|||+ +.||+||++||+|++.+++ ++ |+.+++++||+.|+++|+
T Consensus 95 ~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms 174 (228)
T TIGR03691 95 TGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLS 174 (228)
T ss_pred cHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCC
Confidence 9999999888877532 4799999999999986 4679999999999999975 45 889999999999999887
Q ss_pred h--hhHHHhhhHH
Q 030209 154 Q--CSSLIWNPMS 164 (181)
Q Consensus 154 ~--~~~l~~~~~~ 164 (181)
. +.+++.+++.
T Consensus 175 ~eeai~la~~aL~ 187 (228)
T TIGR03691 175 LADALGLAVQALR 187 (228)
T ss_pred HHHHHHHHHHHHH
Confidence 5 4555554443
No 32
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=224.89 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=144.3
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+.+.|+|.|||+.++||++|++||.++ .+..++.+.||++|++||+|++||+.||++.+++++|.++++|++.|+.+|+
T Consensus 30 AikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~ 108 (241)
T KOG0176|consen 30 AIKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPIS 108 (241)
T ss_pred HHhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCccc
Confidence 456799999999999999999999997 6778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-------c--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC
Q 030209 84 PETFASLVSALLYEK-------R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV 150 (181)
Q Consensus 84 ~~~la~~is~~ly~~-------r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~ 150 (181)
++.+.+.++++-... + .|||||++++||+|++ ||+||..||+|+|..+++- |+.-+++.|+++|++
T Consensus 109 VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~-gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~ 187 (241)
T KOG0176|consen 109 VESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDET-GPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHK 187 (241)
T ss_pred HHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCC-CceEEEeCCCCceEEecceeccccchHHHHHHHHHHhh
Confidence 999999999996321 1 4999999999999965 7999999999999999775 889999999999998
Q ss_pred Chh--hhhHHHhhhHHHHHHHHH
Q 030209 151 PVR--QCSSLIWNPMSCLKLYLK 171 (181)
Q Consensus 151 ~l~--~~~~l~~~~~~~~~~~~~ 171 (181)
+|+ |+++++. +.|++..|
T Consensus 188 ~ltL~ea~~~~L---~iLkqVMe 207 (241)
T KOG0176|consen 188 DLTLKEAEKIVL---KILKQVME 207 (241)
T ss_pred cccHHHHHHHHH---HHHHHHHH
Confidence 765 6776666 44444433
No 33
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=229.49 Aligned_cols=169 Identities=23% Similarity=0.359 Sum_probs=154.4
Q ss_pred cccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhh-hhhCCCCC
Q 030209 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQ-LREERDMK 83 (181)
Q Consensus 5 ~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~-~~~~~~i~ 83 (181)
..+|+|+||+|++||||||+|+..|+|++...++++|+|+++||+++|++|..+|+|.+.+.+.....+.. +..|+.+.
T Consensus 38 ~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~ 117 (256)
T KOG0185|consen 38 IVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLG 117 (256)
T ss_pred eeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccC
Confidence 35799999999999999999999999999999999999999999999999999999999999988877654 66779999
Q ss_pred HHHHHHHHHHHHHhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCC---CChh-
Q 030209 84 PETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFM---VPVR- 153 (181)
Q Consensus 84 ~~~la~~is~~ly~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~---~~l~- 153 (181)
|+.++++|.+++|.+| +.|++.+++|||+|.++.|+|..+|-.|..++.+.. |.++++|+|+++|. +.++
T Consensus 118 Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~ 197 (256)
T KOG0185|consen 118 PKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSR 197 (256)
T ss_pred hHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHH
Confidence 9999999999999986 899999999999999899999999999999999876 99999999999876 2344
Q ss_pred -hhhHHHhhhHHHHH-HHHHHhhhh
Q 030209 154 -QCSSLIWNPMSCLK-LYLKLCYHL 176 (181)
Q Consensus 154 -~~~~l~~~~~~~~~-~~~~~~~~~ 176 (181)
+|+++|+ +|++ ++||+|+++
T Consensus 198 eeA~~li~---~cMrVL~YRD~ra~ 219 (256)
T KOG0185|consen 198 EEAEALIE---KCMRVLYYRDARAS 219 (256)
T ss_pred HHHHHHHH---HHHHHHhccccccc
Confidence 4789999 6777 899999876
No 34
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.9e-32 Score=211.11 Aligned_cols=159 Identities=13% Similarity=0.188 Sum_probs=143.0
Q ss_pred cccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 030209 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (181)
Q Consensus 5 ~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~ 84 (181)
..+.+|+|||.++||||++++++.++..+-.+...+||++|+|+++|+++|+.+|+..|++.+|..+++|.+++|.+||.
T Consensus 28 is~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~ 107 (249)
T KOG0178|consen 28 ISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPC 107 (249)
T ss_pred HhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 45778999999999999999999998777777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhc--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCCh---h
Q 030209 85 ETFASLVSALL--YEK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPV---R 153 (181)
Q Consensus 85 ~~la~~is~~l--y~~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l---~ 153 (181)
+.|+++++++. |++ ..||||||++.+|||+..|.+||+-||||++-.|++. ++..+++.|.+.|+++. .
T Consensus 108 eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~ 187 (249)
T KOG0178|consen 108 EQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLE 187 (249)
T ss_pred HHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHH
Confidence 99999999997 554 3799999999999999888999999999999999887 77899999999988763 3
Q ss_pred hhhHHHhhhH
Q 030209 154 QCSSLIWNPM 163 (181)
Q Consensus 154 ~~~~l~~~~~ 163 (181)
+|.+++.+.|
T Consensus 188 eA~~laikvL 197 (249)
T KOG0178|consen 188 EAKALAIKVL 197 (249)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 35
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4e-31 Score=206.94 Aligned_cols=165 Identities=16% Similarity=0.249 Sum_probs=151.3
Q ss_pred ccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHH
Q 030209 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (181)
Q Consensus 6 ~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~ 85 (181)
+.|-|.||++++|++|+++.|+... +++.++...++|+|+++++|+++|..+|++..+.++|.++.++++.+|.+||++
T Consensus 34 ~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~D 112 (246)
T KOG0182|consen 34 QAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCD 112 (246)
T ss_pred cCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHH
Confidence 3488999999999999999998874 788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--Hhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChh-hhh
Q 030209 86 TFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVR-QCS 156 (181)
Q Consensus 86 ~la~~is~~l--y~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~-~~~ 156 (181)
.||++++++. |+++ +||+||.+++.|+|++.||.+|++||.|.++.+++. ...-+.++||+.++++.. ..+
T Consensus 113 iL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~ 192 (246)
T KOG0182|consen 113 ILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFE 192 (246)
T ss_pred HHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCccchHH
Confidence 9999999996 6665 999999999999999999999999999999999887 557899999999888755 368
Q ss_pred HHHhhhHHHHHHHHH
Q 030209 157 SLIWNPMSCLKLYLK 171 (181)
Q Consensus 157 ~l~~~~~~~~~~~~~ 171 (181)
++++.++.+|...+.
T Consensus 193 e~ve~ai~al~~sl~ 207 (246)
T KOG0182|consen 193 ETVETAISALQSSLG 207 (246)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888989999886655
No 36
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.8e-32 Score=208.34 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=145.9
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+..+|.+.|||+..||||||++++..+ .++.....+|++.|.++|+|.+||+.+|++.+++..|..++.|..-++++||
T Consensus 28 Av~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~p 106 (233)
T KOG0181|consen 28 AVVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIP 106 (233)
T ss_pred HHhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCC
Confidence 456899999999999999999998765 7788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhhh
Q 030209 84 PETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQC 155 (181)
Q Consensus 84 ~~~la~~is~~l--y~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~~ 155 (181)
+..+.+.++..+ |++. .||||+++++||||+. +|.||++||+|+++.|+++ +.--+..|||++|.++|+.
T Consensus 107 t~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~-~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edlel- 184 (233)
T KOG0181|consen 107 TTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLEL- 184 (233)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC-ceeEEEECCccceeehhhhhhccCcchHHHHHHHHhcccccc-
Confidence 999999999999 4443 7999999999999964 7999999999999999988 6678899999999887654
Q ss_pred hHHHhhhHHHHHHHH
Q 030209 156 SSLIWNPMSCLKLYL 170 (181)
Q Consensus 156 ~~l~~~~~~~~~~~~ 170 (181)
+.-|.+++..+|+..
T Consensus 185 dd~ihtailtlkE~f 199 (233)
T KOG0181|consen 185 DDAIHTAILTLKESF 199 (233)
T ss_pred chHHHHHHHHHHHHh
Confidence 344566777777554
No 37
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-31 Score=215.35 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=147.0
Q ss_pred cccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 030209 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (181)
Q Consensus 5 ~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~ 84 (181)
-.+|+|++|++++.|||+|+|+|++.|.+|.+..++||.+||++++-+.+|-+||++.+.+.+..++++|++++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhhhh--HH
Q 030209 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQCS--SL 158 (181)
Q Consensus 85 ~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~~~--~l 158 (181)
...++.+++++|++|.-.+-+..+|||||++ ||.||++|.-|+..+.+.+ |+.+++++||+-|+++|+..| +|
T Consensus 148 saASKllsN~~y~YkGmGLsmGtMi~G~Dk~-GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L 226 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMGLSMGTMIAGWDKK-GPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDL 226 (285)
T ss_pred HHHHHHHHHHHhhccCcchhheeeEeeccCC-CCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHH
Confidence 9999999999999986678999999999976 6999999999999999776 889999999999999999654 44
Q ss_pred HhhhH
Q 030209 159 IWNPM 163 (181)
Q Consensus 159 ~~~~~ 163 (181)
...++
T Consensus 227 ~rrAI 231 (285)
T KOG0175|consen 227 ARRAI 231 (285)
T ss_pred HHHHH
Confidence 44443
No 38
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=207.06 Aligned_cols=165 Identities=16% Similarity=0.229 Sum_probs=153.4
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|++|++++|||||++|+|.+.|.++.++-.+|+-+|+|+|+|+.||..||.|.+.+.++..+..|..+++.++.
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChh--hhhH
Q 030209 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVR--QCSS 157 (181)
Q Consensus 84 ~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~--~~~~ 157 (181)
+...|+..+++.|++| .-+...+|+||||++.|.++|.+---|+..+.+++ ||.|+++|+|..|+++|+ ||..
T Consensus 95 v~~aA~l~r~~~Y~~r-e~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~ 173 (224)
T KOG0174|consen 95 VHTAASLFREICYNYR-EMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVR 173 (224)
T ss_pred HHHHHHHHHHHHHhCH-HhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHH
Confidence 9999999999999986 24889999999999888999999767788888887 889999999999999988 4789
Q ss_pred HHhhhHHHHHHH
Q 030209 158 LIWNPMSCLKLY 169 (181)
Q Consensus 158 l~~~~~~~~~~~ 169 (181)
++.++++++-.+
T Consensus 174 fvk~Av~lAi~r 185 (224)
T KOG0174|consen 174 FVKNAVSLAIER 185 (224)
T ss_pred HHHHHHHHHHhc
Confidence 999999887543
No 39
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-31 Score=207.47 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=135.9
Q ss_pred cccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCC
Q 030209 3 ITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDM 82 (181)
Q Consensus 3 ~~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (181)
++..+++|+|||||+||||++++|-.++ ++.......|||.|++|++|+++|+.+|.+.+.+++|.++..|+.+++.++
T Consensus 29 KAven~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~pi 107 (254)
T KOG0184|consen 29 KAVENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPI 107 (254)
T ss_pred HHHhcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCC
Confidence 3578899999999999999999998876 566678889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcc----CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChh
Q 030209 83 KPETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVR 153 (181)
Q Consensus 83 ~~~~la~~is~~ly~~r----~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~ 153 (181)
|...+|.++++++|.+. .|||||+.++++||. +||+||.+||+|..+.++.+ |.+.+..-||+...+.|+
T Consensus 108 P~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt 185 (254)
T KOG0184|consen 108 PGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMT 185 (254)
T ss_pred chHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHHhccccccc
Confidence 99999999999986542 799999999999995 57999999999999999876 889999999998766555
No 40
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-30 Score=197.87 Aligned_cols=155 Identities=61% Similarity=0.963 Sum_probs=147.7
Q ss_pred CCcccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCC
Q 030209 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (181)
Q Consensus 1 ~~~~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (181)
|++.+.+|++++|++++|||.||+|.|........+++.+|||+|+|++++|.+|+..|.|.+.++++...++|+++.++
T Consensus 1 m~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R 80 (204)
T KOG0180|consen 1 MSIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREER 80 (204)
T ss_pred CcceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhc
Confidence 78899999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeec-Ccc----chhhHHHHHHhhCCCChhhh
Q 030209 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVG-SLQ----KILLLLELLESLFMVPVRQC 155 (181)
Q Consensus 81 ~i~~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~-~~~----g~~~~~~~Le~~~~~~l~~~ 155 (181)
+|.|+.+++++|.++|++|+.||.+..+|||+|++++|+|+.+|..|....- +|. ++.-.++..|..|+++|+..
T Consensus 81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180|consen 81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence 9999999999999999999999999999999999999999999999998876 454 88899999999999999864
No 41
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=5.5e-30 Score=199.52 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=129.9
Q ss_pred CceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEe-cCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHH
Q 030209 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (181)
Q Consensus 8 g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~ 86 (181)
|+|++||+++||||||+|+|.+.|.++.+++.+||++| +++++|+.+|..||+|.|.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 68999999999999999999999999999999999999 9999999999999999999999999999883 22 577
Q ss_pred HHHHHHHHHHhcc-CCccceEEEEEEEcCCCCcEEEEECCCCceeec--Ccc----chhhHHHHHHhhCC-CChhhhhHH
Q 030209 87 FASLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVG--SLQ----KILLLLELLESLFM-VPVRQCSSL 158 (181)
Q Consensus 87 la~~is~~ly~~r-~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~--~~~----g~~~~~~~Le~~~~-~~l~~~~~l 158 (181)
.|+....+. ..+ .+|+.+++|++ |+ |+||.+||.|++.+. ++. |+.+++++||+.|+ ++| ||.+|
T Consensus 76 ~a~l~~~l~-~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m-eA~~l 148 (172)
T PRK05456 76 AVELAKDWR-TDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL-SAEEI 148 (172)
T ss_pred HHHHHHHHH-hccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC-CHHHH
Confidence 776665543 223 36888999994 42 699999999999666 565 99999999999999 999 99999
Q ss_pred HhhhHHHHHHH
Q 030209 159 IWNPMSCLKLY 169 (181)
Q Consensus 159 ~~~~~~~~~~~ 169 (181)
+.++++.+..+
T Consensus 149 a~kai~~A~~R 159 (172)
T PRK05456 149 AEKALKIAADI 159 (172)
T ss_pred HHHHHHHHHHh
Confidence 99888777654
No 42
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.6e-31 Score=205.12 Aligned_cols=147 Identities=18% Similarity=0.287 Sum_probs=137.1
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+..+|+|++|++++|+|||+.+++... .+...+...||..+++|++++++|+.||++.+++++|.+|+.|++..+.+++
T Consensus 26 AvrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvt 104 (249)
T KOG0183|consen 26 AVRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVT 104 (249)
T ss_pred HHhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcH
Confidence 456899999999999999999998764 7888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhc--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCC
Q 030209 84 PETFASLVSALL--YEK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVP 151 (181)
Q Consensus 84 ~~~la~~is~~l--y~~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~ 151 (181)
++.++++|+.+. |++ ..||||+|++|+|+|++|.|.||+.||+|.|++|++. ++.-+..|||+.|.+.
T Consensus 105 veyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~ 180 (249)
T KOG0183|consen 105 VEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEE 180 (249)
T ss_pred HHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccc
Confidence 999999999997 655 2799999999999999999999999999999999876 8899999999988765
No 43
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=5.4e-29 Score=193.21 Aligned_cols=147 Identities=12% Similarity=0.184 Sum_probs=124.5
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecC-cEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD-RLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~l 87 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++ +++|+++|..+|++.|.++++.++++|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999988774 44
Q ss_pred HHHHHHHHHhccCCccc-eEEEEEEEcCCCCcEEEEECCCCceeecC--cc----chhhHHHHHHhhCCCC-hhhhhHHH
Q 030209 88 ASLVSALLYEKRFGPYF-CQPVIAGLSDEDKPFICTMDSIGAKYVGS--LQ----KILLLLELLESLFMVP-VRQCSSLI 159 (181)
Q Consensus 88 a~~is~~ly~~r~rP~~-vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~--~~----g~~~~~~~Le~~~~~~-l~~~~~l~ 159 (181)
++.+..++ ..+.+|+. +.++++++| +||.+||.|++.+.+ ++ ||.+++++||..|+++ |+ ++++.
T Consensus 76 a~l~~~l~-~~~~~~~l~a~~iv~~~~-----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms-~~~la 148 (171)
T cd01913 76 VELAKDWR-TDRYLRRLEAMLIVADKE-----HTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS-AEEIA 148 (171)
T ss_pred HHHHHHHH-hccCcCceEEEEEEeCCC-----cEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC-HHHHH
Confidence 55544443 23445665 666665443 899999999999984 65 9999999999999995 99 67888
Q ss_pred hhhHHHHH
Q 030209 160 WNPMSCLK 167 (181)
Q Consensus 160 ~~~~~~~~ 167 (181)
.++++.+-
T Consensus 149 ~~Av~~A~ 156 (171)
T cd01913 149 RKALKIAA 156 (171)
T ss_pred HHHHHHHH
Confidence 87766553
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.96 E-value=7.1e-28 Score=181.85 Aligned_cols=153 Identities=27% Similarity=0.330 Sum_probs=139.9
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+||++++|||++|+|++.+.+......+.+|+++++++++++++|..+|++.+.++++.+++.|+++++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998877688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CCccceEEEEEEEcCCCCcEEEEECCCCceeec-Ccc----chhhHHHHHHhhCCCChhh--hhHHHh
Q 030209 89 SLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVG-SLQ----KILLLLELLESLFMVPVRQ--CSSLIW 160 (181)
Q Consensus 89 ~~is~~ly~~r-~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~-~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~ 160 (181)
+.+++.++.++ +||++++++++|+|+ ++|+||.+||+|++.++ +++ ++.++.++|++.++++++. +.+++.
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELAL 159 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999998775 599999999999997 68999999999999999 776 8899999999999887664 455555
Q ss_pred hh
Q 030209 161 NP 162 (181)
Q Consensus 161 ~~ 162 (181)
++
T Consensus 160 ~~ 161 (164)
T cd01901 160 KA 161 (164)
T ss_pred HH
Confidence 43
No 45
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.96 E-value=4.6e-28 Score=188.03 Aligned_cols=147 Identities=12% Similarity=0.182 Sum_probs=123.9
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEe-cCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~l 87 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|+++|..||+|.|.++++.+++.|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999988743 4677
Q ss_pred HHHHHHHHHhccCCc-cceEEEEEEEcCCCCcEEEEECCCCceeec--Ccc----chhhHHHHHHhhCC-CChhhhhHHH
Q 030209 88 ASLVSALLYEKRFGP-YFCQPVIAGLSDEDKPFICTMDSIGAKYVG--SLQ----KILLLLELLESLFM-VPVRQCSSLI 159 (181)
Q Consensus 88 a~~is~~ly~~r~rP-~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~--~~~----g~~~~~~~Le~~~~-~~l~~~~~l~ 159 (181)
|+.++++. .++.+| +.+.++++|| ++||.+||.|.+.+. +++ ||.+++++||..|+ ++|+ |+++.
T Consensus 76 a~l~~~~~-~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s-a~~la 148 (171)
T TIGR03692 76 VELAKDWR-TDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS-AEEIA 148 (171)
T ss_pred HHHHHHHh-hcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC-HHHHH
Confidence 77777742 223333 4477777644 389999999999996 465 99999999999994 6677 99999
Q ss_pred hhhHHHHH
Q 030209 160 WNPMSCLK 167 (181)
Q Consensus 160 ~~~~~~~~ 167 (181)
.++++.+-
T Consensus 149 ~~Av~~A~ 156 (171)
T TIGR03692 149 REALKIAA 156 (171)
T ss_pred HHHHHHHH
Confidence 98877664
No 46
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-28 Score=197.35 Aligned_cols=159 Identities=15% Similarity=0.235 Sum_probs=148.4
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
++.+|+|++|+.++||||+++|+|++.|.++.+++..||+.|.++|+|+.+|-.+|...+.+.+-.+..++.+..++.+.
T Consensus 33 ~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~r 112 (271)
T KOG0173|consen 33 ATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPR 112 (271)
T ss_pred ccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhH
Q 030209 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSS 157 (181)
Q Consensus 84 ~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~ 157 (181)
+-..-+++.+.++.+. ...++.+|++|+|.+ |||||.+.|-|+...-+|. |+..++++||++|+++|++ +++
T Consensus 113 Vv~A~~mlkQ~LFrYq-G~IgA~LiiGGvD~T-GpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~ 190 (271)
T KOG0173|consen 113 VVTALRMLKQHLFRYQ-GHIGAALILGGVDPT-GPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIK 190 (271)
T ss_pred eeeHHHHHHHHHHHhc-CcccceeEEccccCC-CCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHHHH
Confidence 9999999999997653 368999999999987 6999999999999999998 8899999999999999985 677
Q ss_pred HHhhhHH
Q 030209 158 LIWNPMS 164 (181)
Q Consensus 158 l~~~~~~ 164 (181)
|+.+|++
T Consensus 191 Lv~eAi~ 197 (271)
T KOG0173|consen 191 LVCEAIA 197 (271)
T ss_pred HHHHHHH
Confidence 7776664
No 47
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-25 Score=177.84 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=141.0
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+...|+++||+|.++..||++-+|..+ . .+...+|||+|++|++++++|+.+|++.|.+++|.++..+++.++++++
T Consensus 28 avkqGsatVGLks~thaVLvAl~r~~s-e--Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~p 104 (264)
T KOG0863|consen 28 AVKQGSATVGLKSRTHAVLVALKRAQS-E--LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLP 104 (264)
T ss_pred HHhcccceEeecccceEEEeeeccchh-H--HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCccc
Confidence 457899999999999999999998765 2 2557899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--c--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc--c--hhhHHHHHHhhCCC-Chhh
Q 030209 84 PETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ--K--ILLLLELLESLFMV-PVRQ 154 (181)
Q Consensus 84 ~~~la~~is~~ly~~--r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~--g--~~~~~~~Le~~~~~-~l~~ 154 (181)
+.-+...+.+-++.+ | .|||||.++++|||+. ||+||.++|+|++.+++.. | |.-+..+||+...+ .-+.
T Consensus 105 v~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~-G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~ 183 (264)
T KOG0863|consen 105 VLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDES-GPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSS 183 (264)
T ss_pred HHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCC-CceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCC
Confidence 999999999988643 3 6899999999999975 7999999999999999877 4 46889999986221 1112
Q ss_pred hhHHHhhhHHHHHHHHH
Q 030209 155 CSSLIWNPMSCLKLYLK 171 (181)
Q Consensus 155 ~~~l~~~~~~~~~~~~~ 171 (181)
-|+||.+++..++..+.
T Consensus 184 ~eELI~~gi~Alr~tlp 200 (264)
T KOG0863|consen 184 PEELIKHGIMALRETLP 200 (264)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 48999999999985543
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.4e-10 Score=85.02 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=108.5
Q ss_pred ccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecC-cEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 030209 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD-RLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (181)
Q Consensus 6 ~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~ 84 (181)
-+++|+++++-++-|+||+|.++|.|..+++.+..|+.+|.+ +++.|++|..||+..|.++++.+++.|+-+--+ .+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aa 79 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AA 79 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HH
Confidence 368999999999999999999999999999999998888876 899999999999999999999999987522111 33
Q ss_pred HHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCc--c----chhhHHHHHHhhCCCChhhhhHH
Q 030209 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSL--Q----KILLLLELLESLFMVPVRQCSSL 158 (181)
Q Consensus 85 ~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~--~----g~~~~~~~Le~~~~~~l~~~~~l 158 (181)
-.+|+.++.--| .|-+-.-++++ |++ .++-+...|-+.+... . |..++++--...+..+=-.++++
T Consensus 80 velaKdwr~Dk~---lr~LEAmllVa--d~~---~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~eI 151 (178)
T COG5405 80 VELAKDWRTDKY---LRKLEAMLLVA--DKT---HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSAREI 151 (178)
T ss_pred HHHHHhhhhhhH---HHHHhhheeEe--CCC---cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCHHHH
Confidence 444444443333 34455666665 443 4888888887777533 2 55677666555543332246777
Q ss_pred HhhhHHHH
Q 030209 159 IWNPMSCL 166 (181)
Q Consensus 159 ~~~~~~~~ 166 (181)
.+.+|+.+
T Consensus 152 a~~sl~iA 159 (178)
T COG5405 152 AEKSLKIA 159 (178)
T ss_pred HHHHHhhh
Confidence 77655544
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=6.6e-05 Score=59.58 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=102.9
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEec---C-cEEEEEcCChhHHHHHHHHHHHHHHHhhhhhC-CCCC
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIH---D-RLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDMK 83 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~---~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~i~ 83 (181)
+=++|++-..|.|+++|+|...|.- .-...+|+|... + -+++..+|..|-.|.+.+.+.+..+.-.-+.- ..++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCch-HHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 4579999999999999999876532 123466776554 3 35678899999999999999888763222221 2235
Q ss_pred HHHHHHHHHHHH---Hhc-c------CCccceEEEEEEEcCCCCcEEEEECCCCceeec----Ccc--c-hhhHHHHHHh
Q 030209 84 PETFASLVSALL---YEK-R------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVG----SLQ--K-ILLLLELLES 146 (181)
Q Consensus 84 ~~~la~~is~~l---y~~-r------~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~----~~~--g-~~~~~~~Le~ 146 (181)
.-..+..++... +.+ + .--|.||+|++|-=..+-|.||.|-|-|++.+. +|. | +.+-.|+||+
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEtKYGKPildR 160 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGETKYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccccccCchhhhh
Confidence 566666666554 333 1 246899999999765445899999999999885 233 4 4688899999
Q ss_pred hCCCC--hhhhh
Q 030209 147 LFMVP--VRQCS 156 (181)
Q Consensus 147 ~~~~~--l~~~~ 156 (181)
.+..+ |.|+-
T Consensus 161 ~i~~~~pLeea~ 172 (255)
T COG3484 161 TITYDTPLEEAA 172 (255)
T ss_pred hhhccCCHHHHh
Confidence 85544 44443
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=64.57 E-value=5.1 Score=31.83 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=36.9
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+-+||..+++|.|||+|+|. +++-|.......|-+.| | .|.=-+=+.|.
T Consensus 2 SLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEeeL------Y---sG~IktdeEL~ 50 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEEL------Y---SGKIKTDEELL 50 (194)
T ss_pred eEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHHH------h---CCccCCHHHHH
Confidence 57899999999999999963 35667766666665432 2 33323456666
Q ss_pred HHHHHH
Q 030209 89 SLVSAL 94 (181)
Q Consensus 89 ~~is~~ 94 (181)
++...+
T Consensus 51 kkA~El 56 (194)
T PF09894_consen 51 KKAEEL 56 (194)
T ss_pred HHHHHc
Confidence 666655
No 51
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=39.23 E-value=62 Score=20.90 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhhhCCCCCHHHHHHHHHHH
Q 030209 64 YQRLVFRHKLYQLREERDMKPETFASLVSAL 94 (181)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~~~~la~~is~~ 94 (181)
.++++.....+..+.|++++.+.+|..+.--
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis 33 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGIS 33 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHccc
Confidence 4566666777788899999999999887544
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.24 E-value=26 Score=29.06 Aligned_cols=55 Identities=31% Similarity=0.386 Sum_probs=37.9
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+.+|+..++||.|||+|+|. +++-|.-.|...|-+.+ -.|.--+-++|+
T Consensus 2 tLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEekL---------YsGeIkteEEL~ 50 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELA 50 (293)
T ss_pred eEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHHh---------hcCccccHHHHH
Confidence 57899999999999999963 24456666666554432 244444667777
Q ss_pred HHHHHH
Q 030209 89 SLVSAL 94 (181)
Q Consensus 89 ~~is~~ 94 (181)
++...+
T Consensus 51 r~aeel 56 (293)
T COG4079 51 RKAEEL 56 (293)
T ss_pred HHHHHc
Confidence 777766
No 53
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=35.57 E-value=39 Score=24.31 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=34.8
Q ss_pred eecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHH
Q 030209 34 TIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKL 73 (181)
Q Consensus 34 i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~ 73 (181)
...++..|+++..+|+++.++-...|+....+.++..++.
T Consensus 7 ~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~ 46 (112)
T cd03067 7 SDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQA 46 (112)
T ss_pred cchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999988888764
No 54
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=35.15 E-value=56 Score=24.60 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=32.6
Q ss_pred EEECCCCceeecCcc----chhhHHHHHHhhCCCChhhhhHHHhhhHHHH
Q 030209 121 CTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQCSSLIWNPMSCL 166 (181)
Q Consensus 121 y~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~~~~l~~~~~~~~ 166 (181)
..+|.+|-....+|- ||..+.+-+-.+|..+++..|.+=.++-+.+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kIkNteIA 120 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEIA 120 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhcccHHHH
Confidence 578889999988775 8888888888888777765544433333333
No 55
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=34.56 E-value=1.8e+02 Score=26.22 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhh
Q 030209 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESL 147 (181)
Q Consensus 85 ~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~ 147 (181)
+.+++.+...++.+.+ -.--+.++.+-+.+|++.||.++..|.-.--... ...++.. |++-
T Consensus 138 s~i~~a~~eff~~~gF-~eV~tP~i~~~~~EGg~elF~v~yf~~~a~LtqS~QLyke~~~~a-l~rV 202 (435)
T COG0017 138 SSILRAIREFFYENGF-TEVHTPIITASATEGGGELFKVDYFDKEAYLTQSPQLYKEALAAA-LERV 202 (435)
T ss_pred HHHHHHHHHHHHhCCc-EEecCceEeccCCCCCceeEEEeecCcceEEecCHHHHHHHHHHH-hCce
Confidence 3444455555555532 3345678888888999999999988865332222 3344444 6654
No 56
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=24.73 E-value=1.4e+02 Score=21.37 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhhhhCC-CCCHHHH
Q 030209 61 QTLYQRLVFRHKLYQLREER-DMKPETF 87 (181)
Q Consensus 61 ~~l~~~~~~~~~~~~~~~~~-~i~~~~l 87 (181)
..+++.++.+++.|++++++ ++|.+.+
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 56788889999999999888 5555443
No 57
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.30 E-value=54 Score=25.99 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=15.9
Q ss_pred EEEEEEEcCCCCcEEEEECCCCc
Q 030209 106 QPVIAGLSDEDKPFICTMDSIGA 128 (181)
Q Consensus 106 s~ii~G~D~~~~p~Ly~iD~~G~ 128 (181)
+++|-|+|+ +.+|..||.|.
T Consensus 150 ~v~itgyDk---~n~yynDpyG~ 169 (195)
T COG4990 150 SVLITGYDK---YNIYYNDPYGY 169 (195)
T ss_pred eeEeecccc---cceEecccccc
Confidence 346789985 68999999974
No 58
>KOG4636 consensus Uncharacterized conserved protein with TLDc domain [Function unknown]
Probab=24.23 E-value=1.4e+02 Score=26.45 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=38.7
Q ss_pred ccccCceEEEEEeCCE--EEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCC
Q 030209 4 TEYNGSALVAMVGKNC--FAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGL 56 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dg--Vvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~ 56 (181)
.-++|.|++-++.+|. +|||+|...-............+|.|.+++ ..+.|.
T Consensus 320 ~gYrgPtlvi~~tkder~~viA~~qew~e~~~~fgG~~~~~f~i~P~f-~~~~~s 373 (483)
T KOG4636|consen 320 FGYRGPTLVIFRTKDERVVVIAADQEWRESGNRFGGTFTSFFEIVPNF-RRIDGS 373 (483)
T ss_pred ccccCCeEEEEEecCCcEEEEeechhhhhhccccccccceeEEeecce-EEecCC
Confidence 4568999999999987 888998876555555566778889999875 455553
No 59
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=24.05 E-value=1.6e+02 Score=23.24 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHh
Q 030209 60 SQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYE 97 (181)
Q Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~is~~ly~ 97 (181)
++.++++++..+.......+....+-...|++|+++|-
T Consensus 125 ARtv~RRAER~~V~l~~~~~~~~~~l~YlNRLSdlLF~ 162 (184)
T COG2096 125 ARTVARRAERRLVALSREEEANLVVLKYLNRLSDLLFV 162 (184)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 57788888888776655555556667788999999874
No 60
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=23.47 E-value=1.9e+02 Score=20.78 Aligned_cols=36 Identities=6% Similarity=0.021 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHH
Q 030209 56 LATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALL 95 (181)
Q Consensus 56 ~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~is~~l 95 (181)
+..|--.+++.+|. |..+++..++++.+++.+...+
T Consensus 39 LT~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 74 (109)
T PRK11508 39 LSPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANKF 74 (109)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 55666668888766 4456788899999999886543
No 61
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=23.30 E-value=1.5e+02 Score=19.03 Aligned_cols=22 Identities=9% Similarity=-0.004 Sum_probs=14.1
Q ss_pred HHHhhhhhCCCCCHHHHHHHHH
Q 030209 71 HKLYQLREERDMKPETFASLVS 92 (181)
Q Consensus 71 ~~~~~~~~~~~i~~~~la~~is 92 (181)
+..|..++|.++++.+++..+.
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHhC
Confidence 3556667999999998887764
No 62
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=22.52 E-value=1.1e+02 Score=27.16 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=38.7
Q ss_pred EEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHH--HhccCCccceEEEEEEEcCC
Q 030209 49 LFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALL--YEKRFGPYFCQPVIAGLSDE 115 (181)
Q Consensus 49 i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r~rP~~vs~ii~G~D~~ 115 (181)
=+.|.||..+|++.+.+..... +....-.+..+++|++.+ |...+.-+-+-+.-||+-|+
T Consensus 271 GllGlSg~ssD~R~l~~~~~~g-------~~A~lA~~~f~~Ri~kyIg~y~a~L~glDaiVFTaGIGEN 332 (396)
T COG0282 271 GLLGLSGLSSDMRDLEEAAAEG-------NEAKLALDMFVYRIAKYIGSYAAALGGLDALVFTAGIGEN 332 (396)
T ss_pred cccccccccchHHHHHHHhccC-------chHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCccccC
Confidence 3579999999999997754322 112335677778888877 33334445555666787665
No 63
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.39 E-value=1e+02 Score=24.28 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=21.7
Q ss_pred CChhhhhHHHhhhHHHHHHHHHHhhh
Q 030209 150 VPVRQCSSLIWNPMSCLKLYLKLCYH 175 (181)
Q Consensus 150 ~~l~~~~~l~~~~~~~~~~~~~~~~~ 175 (181)
.+++||++|+.+++..+...+..|-+
T Consensus 124 Y~leEAeaLLkknl~sa~k~l~~~~~ 149 (187)
T KOG3313|consen 124 YDLEEAEALLKKNLTSAVKSLDVLEE 149 (187)
T ss_pred ecHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46889999999999998888877755
No 64
>PRK07105 pyridoxamine kinase; Validated
Probab=21.72 E-value=79 Score=25.94 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.8
Q ss_pred CcCceEEecCcEEEEEcCChhHHHHHHH
Q 030209 38 DFQRISKIHDRLFIGLSGLATDSQTLYQ 65 (181)
Q Consensus 38 ~~~Ki~~I~~~i~~~~sG~~aD~~~l~~ 65 (181)
..+||..++|.+..|.+|..+|...+..
T Consensus 3 ~~~~vl~~~d~~~~G~aG~~adi~~~~~ 30 (284)
T PRK07105 3 PVKRVAAIHDLSGFGRVALTASIPIMSS 30 (284)
T ss_pred CCCeEEEEecccccceehHhhHHHHHHH
Confidence 4569999999999999999999999854
No 65
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.64 E-value=88 Score=22.48 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=25.0
Q ss_pred eEEecCcEEEEEcCChhHHHHHHHHHHHHH
Q 030209 42 ISKIHDRLFIGLSGLATDSQTLYQRLVFRH 71 (181)
Q Consensus 42 i~~I~~~i~~~~sG~~aD~~~l~~~~~~~~ 71 (181)
+|+|.+..++.+.|..+|+-.+.++++...
T Consensus 10 ~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 10 IFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 588999999999999999888888876653
No 66
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=21.29 E-value=1e+02 Score=20.68 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=23.0
Q ss_pred HHHHHHhhCCCChhh-hhHHHhhhHHHHHHHH
Q 030209 140 LLELLESLFMVPVRQ-CSSLIWNPMSCLKLYL 170 (181)
Q Consensus 140 ~~~~Le~~~~~~l~~-~~~l~~~~~~~~~~~~ 170 (181)
.+..|+.+-+-++++ +++++++++..+|..|
T Consensus 43 ~L~mL~eKTkGNL~~~E~~lL~~~L~eLRm~y 74 (74)
T PF08899_consen 43 LLAMLQEKTKGNLDEEEERLLESALYELRMRY 74 (74)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhhcC
Confidence 456677767777885 6789999998888643
No 67
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=20.73 E-value=1.7e+02 Score=20.80 Aligned_cols=45 Identities=18% Similarity=0.120 Sum_probs=28.0
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhhhCC----------CCCHHHHHHHHHHHHHhc
Q 030209 54 SGLATDSQTLYQRLVFRHKLYQLREER----------DMKPETFASLVSALLYEK 98 (181)
Q Consensus 54 sG~~aD~~~l~~~~~~~~~~~~~~~~~----------~i~~~~la~~is~~ly~~ 98 (181)
.|..-|+..+.+.++.-...+..++-. .++++.+|.++...+...
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~ 97 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEK 97 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHH
Confidence 477778888888887755433332220 278899999999987543
No 68
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=20.68 E-value=2e+02 Score=22.34 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHh
Q 030209 60 SQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYE 97 (181)
Q Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~is~~ly~ 97 (181)
++.++++++..+.......+....+-...|+||+++|-
T Consensus 117 aRtv~RRAER~~v~l~~~~~v~~~~l~ylNRLSD~lFv 154 (171)
T TIGR00636 117 ARTVARRAERRVVALLKEEEINEVVLVYLNRLSDLLFV 154 (171)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 46677777666654322333344567788999999874
No 69
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=20.40 E-value=1.9e+02 Score=20.80 Aligned_cols=33 Identities=3% Similarity=-0.062 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHH
Q 030209 59 DSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALL 95 (181)
Q Consensus 59 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~is~~l 95 (181)
+-=.+++++| .|...++..++++.+.+.+++.+
T Consensus 44 eHWevv~fvR----~fy~ef~tsPaiRMLvK~~~~~~ 76 (111)
T COG2920 44 EHWEVVRFVR----EFYEEFNTSPAIRMLVKAMAKKL 76 (111)
T ss_pred HHHHHHHHHH----HHHHHHCCCchHHHHHHHHHHHh
Confidence 3334455544 45556888899999988888665
No 70
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=20.13 E-value=1.8e+02 Score=22.05 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHh
Q 030209 59 DSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYE 97 (181)
Q Consensus 59 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~is~~ly~ 97 (181)
-++.++++++..+............+-...|++|+.+|-
T Consensus 119 ~aRtv~RraER~~v~l~~~~~v~~~il~ylNRLSd~lfv 157 (163)
T PF01923_consen 119 VARTVCRRAERRAVRLFREEEVRPDILRYLNRLSDYLFV 157 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 356667777666655444444444556677888888863
Done!