Query 030209
Match_columns 181
No_of_seqs 123 out of 1271
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:27:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 3.2E-42 1.1E-46 274.7 22.9 163 1-163 2-179 (213)
2 1yar_H Proteasome beta subunit 100.0 3.8E-42 1.3E-46 275.5 21.2 161 1-163 1-167 (217)
3 1ryp_M 20S proteasome; multica 100.0 6.5E-42 2.2E-46 275.0 22.1 164 1-164 2-189 (222)
4 1iru_J 20S proteasome; cell cy 100.0 8.9E-42 3E-46 270.7 21.0 164 1-164 1-172 (205)
5 1ryp_J 20S proteasome; multica 100.0 2.6E-40 8.8E-45 262.1 21.9 162 2-164 2-171 (204)
6 3h4p_a Proteasome subunit beta 100.0 9.9E-41 3.4E-45 267.7 18.9 158 8-168 1-165 (219)
7 1j2q_H Proteasome beta subunit 100.0 7.6E-40 2.6E-44 259.0 20.6 155 9-164 1-162 (202)
8 1ryp_A 20S proteasome; multica 100.0 3.9E-40 1.3E-44 267.9 17.5 161 4-165 25-203 (243)
9 1ryp_N 20S proteasome; multica 100.0 7.7E-40 2.7E-44 264.6 18.9 162 4-168 4-183 (233)
10 1iru_N 20S proteasome; cell cy 100.0 1.3E-39 4.5E-44 260.7 17.8 160 4-164 4-174 (219)
11 1ryp_K 20S proteasome; multica 100.0 4.3E-39 1.5E-43 253.8 20.1 157 9-165 2-167 (198)
12 1ryp_H 20S proteasome; multica 100.0 7.5E-39 2.6E-43 254.0 21.0 160 3-164 4-169 (205)
13 1ryp_L 20S proteasome; multica 100.0 6.6E-39 2.3E-43 255.5 20.4 156 9-164 1-162 (212)
14 1iru_H 20S proteasome; cell cy 100.0 1.1E-38 3.7E-43 252.9 20.5 154 9-163 1-160 (205)
15 3nzj_K Proteasome component PR 100.0 8.1E-39 2.8E-43 266.2 20.2 161 4-167 71-237 (287)
16 1iru_L 20S proteasome; cell cy 100.0 1.5E-38 5E-43 252.0 20.7 157 9-169 1-163 (204)
17 1ryp_D 20S proteasome; multica 100.0 9.2E-39 3.1E-43 259.4 20.0 162 4-165 24-199 (241)
18 1g0u_M Proteasome component PR 100.0 6.8E-39 2.3E-43 264.0 18.9 159 5-163 38-214 (266)
19 1ryp_C 20S proteasome; multica 100.0 1.4E-38 4.7E-43 258.7 20.5 161 4-164 27-197 (244)
20 1iru_A 20S proteasome; cell cy 100.0 1.8E-38 6E-43 258.5 19.6 157 6-163 33-202 (246)
21 1iru_K 20S proteasome; cell cy 100.0 2.7E-38 9.3E-43 250.0 20.0 156 9-164 2-165 (201)
22 1yar_A Proteasome alpha subuni 100.0 2.4E-38 8.2E-43 255.7 19.8 159 4-164 30-198 (233)
23 1iru_C 20S proteasome; cell cy 100.0 1.9E-38 6.5E-43 260.6 18.6 160 4-163 27-197 (261)
24 1iru_D 20S proteasome; cell cy 100.0 1.7E-38 5.8E-43 259.0 18.0 160 4-164 25-196 (248)
25 1iru_B 20S proteasome; cell cy 100.0 2.7E-38 9.2E-43 255.4 18.9 158 4-163 27-194 (233)
26 1ryp_E 20S proteasome; multica 100.0 1.7E-38 5.7E-43 257.9 17.7 160 4-164 22-197 (242)
27 1iru_G 20S proteasome; cell cy 100.0 1.9E-38 6.5E-43 259.7 17.7 159 4-163 29-197 (254)
28 1q5q_H Proteasome beta-type su 100.0 6.4E-38 2.2E-42 253.8 20.0 155 9-163 1-171 (235)
29 3nzj_H Proteasome component PU 100.0 6.4E-38 2.2E-42 257.7 20.3 161 4-169 25-191 (261)
30 1iru_E 20S proteasome; cell cy 100.0 6.2E-38 2.1E-42 254.6 18.8 159 4-164 30-203 (241)
31 3unf_H Proteasome subunit beta 100.0 1.2E-37 4.2E-42 252.3 20.3 154 9-167 1-160 (234)
32 1ryp_I 20S proteasome; multica 100.0 1.7E-37 6E-42 249.3 20.2 154 9-164 1-160 (222)
33 1q5r_H Proteasome beta-type su 100.0 1.3E-37 4.3E-42 259.8 19.9 161 4-167 61-237 (294)
34 3h4p_A Proteasome subunit alph 100.0 3.2E-38 1.1E-42 259.8 15.7 159 4-164 34-202 (264)
35 1ryp_B 20S proteasome; multica 100.0 1.7E-37 5.7E-42 253.4 19.0 160 4-164 27-197 (250)
36 1j2p_A Alpha-ring, proteasome 100.0 3.4E-37 1.2E-41 251.0 19.9 159 5-166 31-199 (246)
37 1ryp_G 20S proteasome; multica 100.0 2.9E-37 9.9E-42 251.3 18.6 159 4-167 26-197 (244)
38 3nzj_F Proteasome component C1 100.0 2.5E-37 8.5E-42 257.4 18.6 159 4-164 30-201 (288)
39 3unf_N Proteasome subunit beta 100.0 5.9E-37 2E-41 241.8 19.0 153 9-167 1-160 (199)
40 3mi0_A Proteasome subunit alph 100.0 5.1E-37 1.7E-41 250.7 19.2 155 4-169 23-191 (248)
41 2jay_A Proteasome; hydrolase; 100.0 3.1E-37 1.1E-41 257.2 17.8 160 5-164 54-229 (291)
42 1iru_I 20S proteasome; cell cy 100.0 1.4E-36 4.6E-41 246.0 20.4 153 9-163 1-159 (234)
43 1ryp_F 20S proteasome; multica 100.0 5.6E-37 1.9E-41 247.8 17.0 164 4-172 27-202 (233)
44 1iru_F 20S proteasome; cell cy 100.0 1.6E-36 5.5E-41 249.5 16.7 156 5-167 29-196 (263)
45 1q5q_A Proteasome alpha-type s 100.0 1.5E-35 5E-40 243.3 18.5 152 4-163 23-188 (259)
46 1m4y_A ATP-dependent protease 100.0 6.5E-33 2.2E-37 214.2 17.3 145 9-165 1-154 (171)
47 2z3b_A ATP-dependent protease 100.0 8.5E-33 2.9E-37 215.5 16.8 146 6-163 3-160 (180)
48 1g3k_A ATP-dependent protease 100.0 2.3E-32 8E-37 211.7 17.1 146 9-166 1-156 (174)
49 4fqn_A Malcavernin; helical do 24.3 1.4E+02 0.0046 20.2 4.6 29 73-103 41-75 (98)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=3.2e-42 Score=274.70 Aligned_cols=163 Identities=28% Similarity=0.472 Sum_probs=151.4
Q ss_pred CCcccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCC
Q 030209 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (181)
Q Consensus 1 ~~~~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (181)
.|||.++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (213)
T 1iru_M 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81 (213)
T ss_dssp CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhh---------
Q 030209 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESL--------- 147 (181)
Q Consensus 81 ~i~~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~--------- 147 (181)
+++++.+|+++++++|++|+|||++++||||||++++|+||.+||+|++.+++++ |+.+++++||+.
T Consensus 82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred CCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 9999999999999999988999999999999998778999999999999999887 779999999999
Q ss_pred CCCChhh--hhHHHhhhH
Q 030209 148 FMVPVRQ--CSSLIWNPM 163 (181)
Q Consensus 148 ~~~~l~~--~~~l~~~~~ 163 (181)
|+++|+. +.+++.+++
T Consensus 162 ~~~~~s~eea~~l~~~al 179 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVF 179 (213)
T ss_dssp CCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 6677764 555555443
No 2
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=3.8e-42 Score=275.52 Aligned_cols=161 Identities=21% Similarity=0.356 Sum_probs=143.7
Q ss_pred CCcccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCC
Q 030209 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (181)
Q Consensus 1 ~~~~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (181)
|||+..+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV 80 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--
Q 030209 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ-- 154 (181)
Q Consensus 81 ~i~~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~-- 154 (181)
+++++.+|+++++++|.+|+|||++++|||||| + ||+||.+||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ee 158 (217)
T 1yar_H 81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-T-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDE 158 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-S-SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-C-CCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHH
Confidence 999999999999999998889999999999999 4 7999999999999999887 7799999999999998874
Q ss_pred hhHHHhhhH
Q 030209 155 CSSLIWNPM 163 (181)
Q Consensus 155 ~~~l~~~~~ 163 (181)
+.+++.+++
T Consensus 159 a~~la~~al 167 (217)
T 1yar_H 159 GVDLVIRAI 167 (217)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555443
No 3
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=6.5e-42 Score=275.02 Aligned_cols=164 Identities=20% Similarity=0.361 Sum_probs=152.1
Q ss_pred CCcccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhC-
Q 030209 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE- 79 (181)
Q Consensus 1 ~~~~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~- 79 (181)
+|||.++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhh--------
Q 030209 80 RDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESL-------- 147 (181)
Q Consensus 80 ~~i~~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~-------- 147 (181)
.+++++.+|+++++++|++|++||++++||||||++++|+||++||+|++.+++++ |+.+++++||+.
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~ 161 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE 161 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccc
Confidence 99999999999999999988899999999999998778999999999999999887 889999999998
Q ss_pred ---------CCCChhh--hhHHHhhhHH
Q 030209 148 ---------FMVPVRQ--CSSLIWNPMS 164 (181)
Q Consensus 148 ---------~~~~l~~--~~~l~~~~~~ 164 (181)
|+++|+. |.+++.+++.
T Consensus 162 ~~~~~~~~~~~~~~s~eeA~~la~~al~ 189 (222)
T 1ryp_M 162 PGTNGKVKKPLKYLSVEEVIKLVRDSFT 189 (222)
T ss_dssp TTSTTCSBCCCCCCCHHHHHHHHHHHHH
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHH
Confidence 6677764 5566664443
No 4
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=8.9e-42 Score=270.72 Aligned_cols=164 Identities=52% Similarity=0.817 Sum_probs=150.2
Q ss_pred CCcccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCC
Q 030209 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (181)
Q Consensus 1 ~~~~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (181)
|||+..+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..||++.+.++++.+++.|+++++.
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 89999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCccceEEEEEEEcC-CCCcEEEEECCCCceeec-Ccc----chhhHHHHHHhhCCCChhh
Q 030209 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKYVG-SLQ----KILLLLELLESLFMVPVRQ 154 (181)
Q Consensus 81 ~i~~~~la~~is~~ly~~r~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~~~-~~~----g~~~~~~~Le~~~~~~l~~ 154 (181)
+++++.+|+++++++|++|..||++++||||||+ +++|+||.+||+|++.++ +++ |+.+++++||+.|+++|+.
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 9999999999999999988789999999999996 568999999999999776 434 7899999999999998874
Q ss_pred --hhHHHhhhHH
Q 030209 155 --CSSLIWNPMS 164 (181)
Q Consensus 155 --~~~l~~~~~~ 164 (181)
+.+++.+++.
T Consensus 161 eea~~l~~~al~ 172 (205)
T 1iru_J 161 DHLFETISQAML 172 (205)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 5555554443
No 5
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.6e-40 Score=262.13 Aligned_cols=162 Identities=40% Similarity=0.678 Sum_probs=148.8
Q ss_pred CcccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCC
Q 030209 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81 (181)
Q Consensus 2 ~~~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (181)
|||..+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+ +++++++|..||++.++++++.+++.|+++++.+
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 80 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA 80 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 599999999999999999999999999999999898999999999 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCccceEEEEEEEcC-CCCcEEEEECCCCceeec-Ccc----chhhHHHHHHhhCCCChhh-
Q 030209 82 MKPETFASLVSALLYEKRFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKYVG-SLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 82 i~~~~la~~is~~ly~~r~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~~~-~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++++.+|+++++++|++|..||++++||||||+ +++|+||.+||+|++.++ +++ |+.+++++||+.|+++|+.
T Consensus 81 ~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e 160 (204)
T 1ryp_J 81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE 160 (204)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHH
Confidence 999999999999999988779999999999996 578999999999999776 434 7899999999999998774
Q ss_pred -hhHHHhhhHH
Q 030209 155 -CSSLIWNPMS 164 (181)
Q Consensus 155 -~~~l~~~~~~ 164 (181)
+.+++.+++.
T Consensus 161 ea~~l~~~al~ 171 (204)
T 1ryp_J 161 DLFETISQALL 171 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5556554443
No 6
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=9.9e-41 Score=267.73 Aligned_cols=158 Identities=21% Similarity=0.338 Sum_probs=146.4
Q ss_pred CceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHH
Q 030209 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (181)
Q Consensus 8 g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~l 87 (181)
|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.+++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecC-cc----chhhHHHHHHhhCCCChhh--hhHHHh
Q 030209 88 ASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGS-LQ----KILLLLELLESLFMVPVRQ--CSSLIW 160 (181)
Q Consensus 88 a~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~-~~----g~~~~~~~Le~~~~~~l~~--~~~l~~ 160 (181)
|+++++++|++|+|||+|++||||||+++||+||++||+|++.+++ ++ |+.+++++||+.|+++|+. +.+++.
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~ 160 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLAL 160 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999998888999999999999986789999999999999998 77 7789999999999998875 445555
Q ss_pred hhHHHHHH
Q 030209 161 NPMSCLKL 168 (181)
Q Consensus 161 ~~~~~~~~ 168 (181)
+|++.
T Consensus 161 ---~al~~ 165 (219)
T 3h4p_a 161 ---NALKS 165 (219)
T ss_dssp ---HHHHH
T ss_pred ---HHHHH
Confidence 55553
No 7
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=7.6e-40 Score=259.03 Aligned_cols=155 Identities=25% Similarity=0.361 Sum_probs=144.2
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.+|+++.+|
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecC-cc----chhhHHHHHHhhCCCChhh--hhHHHhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGS-LQ----KILLLLELLESLFMVPVRQ--CSSLIWN 161 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~-~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~ 161 (181)
+++++++|.+|.|||++++||||||+ +||+||.+||+|++.+++ ++ |+.+++++||+.|+++|+. +.+++.+
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~ 159 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVR 159 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHH
Confidence 99999999988899999999999997 479999999999999999 76 7799999999999998874 4555554
Q ss_pred hHH
Q 030209 162 PMS 164 (181)
Q Consensus 162 ~~~ 164 (181)
++.
T Consensus 160 al~ 162 (202)
T 1j2q_H 160 AIY 162 (202)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 8
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=3.9e-40 Score=267.85 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=147.0
Q ss_pred cccc-CceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCC
Q 030209 4 TEYN-GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDM 82 (181)
Q Consensus 4 ~~~~-g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (181)
..++ |+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+++++|+++|..||++.++++++.+++.|+++++.+|
T Consensus 25 av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~ 103 (243)
T 1ryp_A 25 ATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDM 103 (243)
T ss_dssp HTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4567 9999999999999999999999 7888899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH--Hhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC----
Q 030209 83 KPETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV---- 150 (181)
Q Consensus 83 ~~~~la~~is~~l--y~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~---- 150 (181)
+++.+|+++++++ |++| +|||+|++||||||+++||+||++||+|++.+++++ |+.+++++||+.|++
T Consensus 104 ~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~ 183 (243)
T 1ryp_A 104 PCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKID 183 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccc
Confidence 9999999999999 7776 899999999999998678999999999999999887 889999999999887
Q ss_pred ---Chhh--hhHHHhhhHHH
Q 030209 151 ---PVRQ--CSSLIWNPMSC 165 (181)
Q Consensus 151 ---~l~~--~~~l~~~~~~~ 165 (181)
+|+. +.+++.++|..
T Consensus 184 ~~~~ms~eea~~l~~~al~~ 203 (243)
T 1ryp_A 184 HINEESWEKVVEFAITHMID 203 (243)
T ss_dssp SCCCSSHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHH
Confidence 7764 55555544433
No 9
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=7.7e-40 Score=264.56 Aligned_cols=162 Identities=17% Similarity=0.261 Sum_probs=149.3
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhh-----hh
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL-----RE 78 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~ 78 (181)
...+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.|.++++.+++.|++ ++
T Consensus 4 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (233)
T 1ryp_N 4 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADA 83 (233)
T ss_dssp CCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTT
T ss_pred cccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCCCHHHHHHHHHHHHHhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC--
Q 030209 79 ERDMKPETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV-- 150 (181)
Q Consensus 79 ~~~i~~~~la~~is~~ly~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~-- 150 (181)
+.+++++.+|+++++++|++| +|||++++||||||++++|+||.+||+|++.+++++ |+.+++++||+.|++
T Consensus 84 ~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 163 (233)
T 1ryp_N 84 EEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRES 163 (233)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGG
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhcccc
Confidence 999999999999999999876 799999999999998778999999999999999887 789999999999998
Q ss_pred ---Chhh--hhHHHhhhHHHHHH
Q 030209 151 ---PVRQ--CSSLIWNPMSCLKL 168 (181)
Q Consensus 151 ---~l~~--~~~l~~~~~~~~~~ 168 (181)
+|+. +.+++. +|++.
T Consensus 164 ~~~~ms~eea~~la~---~al~~ 183 (233)
T 1ryp_N 164 DIPKTTVQVAEEAIV---NAMRV 183 (233)
T ss_dssp GGGGCCHHHHHHHHH---HHHHH
T ss_pred ccCCCCHHHHHHHHH---HHHHH
Confidence 7764 555555 55553
No 10
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.3e-39 Score=260.75 Aligned_cols=160 Identities=21% Similarity=0.267 Sum_probs=147.7
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhh-hhCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL-REERDM 82 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~~~~i 82 (181)
...+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.+.+++|.+++.|++ +++.++
T Consensus 4 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (219)
T 1iru_N 4 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSY 83 (219)
T ss_dssp CCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred CccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred CHHHHHHHHHHHHHhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC--Chhh
Q 030209 83 KPETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV--PVRQ 154 (181)
Q Consensus 83 ~~~~la~~is~~ly~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~--~l~~ 154 (181)
+++.+|+++++++|++| +|||++++||||||++ +|+||.+||+|++.+++++ |+.+++++||+.|++ +|+.
T Consensus 84 ~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~ 162 (219)
T 1iru_N 84 SPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQ 162 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCH
T ss_pred CHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECC-CCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCH
Confidence 99999999999999876 8999999999999964 8999999999999999887 789999999999998 7764
Q ss_pred --hhHHHhhhHH
Q 030209 155 --CSSLIWNPMS 164 (181)
Q Consensus 155 --~~~l~~~~~~ 164 (181)
+.+++.++|.
T Consensus 163 eea~~l~~~al~ 174 (219)
T 1iru_N 163 TEARDLVERCMR 174 (219)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 5566664443
No 11
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=4.3e-39 Score=253.84 Aligned_cols=157 Identities=17% Similarity=0.289 Sum_probs=143.8
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++++++++.+|
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 79999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-cC-CccceEEEEEEEcC-CCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHH
Q 030209 89 SLVSALLYEK-RF-GPYFCQPVIAGLSD-EDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLI 159 (181)
Q Consensus 89 ~~is~~ly~~-r~-rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~ 159 (181)
+++++.+|.+ +. +||++++||||||+ +++|+||.+||+|++.+++++ |+.+++++||+.|+++|+. +.+++
T Consensus 82 ~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~ 161 (198)
T 1ryp_K 82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLL 161 (198)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 9999999876 34 49999999999997 568999999999999999887 7789999999999998874 55666
Q ss_pred hhhHHH
Q 030209 160 WNPMSC 165 (181)
Q Consensus 160 ~~~~~~ 165 (181)
.+++..
T Consensus 162 ~~al~~ 167 (198)
T 1ryp_K 162 KLCVQE 167 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 644433
No 12
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=7.5e-39 Score=253.99 Aligned_cols=160 Identities=19% Similarity=0.232 Sum_probs=147.2
Q ss_pred cccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCC
Q 030209 3 ITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDM 82 (181)
Q Consensus 3 ~~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (181)
....+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..||++.+.++++.+++.|++++++ +
T Consensus 4 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~ 82 (205)
T 1ryp_H 4 GEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-P 82 (205)
T ss_dssp TCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 467889999999999999999999999998999999999999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hh
Q 030209 83 KPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CS 156 (181)
Q Consensus 83 ~~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~ 156 (181)
+++.+|+++++++|.+|.+ |++++||||||+++||+||.+||+|++.+++++ |+.+++++||+.|+++|+. +.
T Consensus 83 ~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 161 (205)
T 1ryp_H 83 STETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV 161 (205)
T ss_dssp CHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHH
Confidence 9999999999999988755 999999999998668999999999999999887 7799999999999998774 55
Q ss_pred HHHhhhHH
Q 030209 157 SLIWNPMS 164 (181)
Q Consensus 157 ~l~~~~~~ 164 (181)
+++.+++.
T Consensus 162 ~l~~~al~ 169 (205)
T 1ryp_H 162 DFIKHSLS 169 (205)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66554443
No 13
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=6.6e-39 Score=255.52 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=144.6
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.+.++++.+++.|+++++.+++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHhhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIWNP 162 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~~ 162 (181)
+++++++|.++..||++++||||||++++|+||.+||+|++.+++++ |+.+++++||+.|+++|+. +.+++.++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~a 160 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRS 160 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Confidence 99999999887779999999999997668999999999999999887 7899999999999998774 55555544
Q ss_pred HH
Q 030209 163 MS 164 (181)
Q Consensus 163 ~~ 164 (181)
+.
T Consensus 161 l~ 162 (212)
T 1ryp_L 161 IL 162 (212)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 14
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.1e-38 Score=252.92 Aligned_cols=154 Identities=17% Similarity=0.228 Sum_probs=142.9
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.+.++++.+++.|+++++.+++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHhhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIWNP 162 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~~ 162 (181)
+++++++|.++. ||++++||||||+++||+||.+||+|++.+++++ |+.+++++||+.|+++|+. +.+++.++
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~a 159 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANA 159 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999998865 9999999999998678999999999999999887 7899999999999998774 45555544
Q ss_pred H
Q 030209 163 M 163 (181)
Q Consensus 163 ~ 163 (181)
+
T Consensus 160 l 160 (205)
T 1iru_H 160 L 160 (205)
T ss_dssp H
T ss_pred H
Confidence 3
No 15
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=8.1e-39 Score=266.23 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=146.5
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.+.++++.+++.|+++++++++
T Consensus 71 ~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~is 150 (287)
T 3nzj_K 71 KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS 150 (287)
T ss_dssp -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred heccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhH
Q 030209 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSS 157 (181)
Q Consensus 84 ~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~ 157 (181)
++.+|+++++++|.+|.+||++++||||||+++||+||++||+|++.+++++ |+.+++++||+.|+++|+. +.+
T Consensus 151 v~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~ 230 (287)
T 3nzj_K 151 VAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALY 230 (287)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHH
Confidence 9999999999999988779999999999997778999999999999999887 7899999999999998875 555
Q ss_pred HHhhhHHHHH
Q 030209 158 LIWNPMSCLK 167 (181)
Q Consensus 158 l~~~~~~~~~ 167 (181)
++. +|++
T Consensus 231 la~---~aL~ 237 (287)
T 3nzj_K 231 LGK---RSIL 237 (287)
T ss_dssp HHH---HHHH
T ss_pred HHH---HHHH
Confidence 555 5555
No 16
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.5e-38 Score=252.02 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=145.0
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++++++|..||++.+.++++.+++.|+++++.+++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHhhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIWNP 162 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~~ 162 (181)
+++++++|.+|.+||++++||||||+ +||+||++||+|++.+++++ |+.+++++||+.|+++|+. +.+++.
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~-- 157 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLAR-- 157 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHH--
Confidence 99999999988789999999999997 57999999999999999887 7899999999999998774 445555
Q ss_pred HHHHHHH
Q 030209 163 MSCLKLY 169 (181)
Q Consensus 163 ~~~~~~~ 169 (181)
++++..
T Consensus 158 -~al~~~ 163 (204)
T 1iru_L 158 -RAIYQA 163 (204)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 555533
No 17
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=9.2e-39 Score=259.45 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=147.0
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.+|+
T Consensus 24 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (241)
T 1ryp_D 24 AVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVT 103 (241)
T ss_dssp HHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45789999999999999999999999998887779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--c--CCccceEEEEEEEcCC-CCcEEEEECCCCceeecCcc----chhhHHHHHHhhC---CCC
Q 030209 84 PETFASLVSALLYEK--R--FGPYFCQPVIAGLSDE-DKPFICTMDSIGAKYVGSLQ----KILLLLELLESLF---MVP 151 (181)
Q Consensus 84 ~~~la~~is~~ly~~--r--~rP~~vs~ii~G~D~~-~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~---~~~ 151 (181)
++.+|+++++++|.+ + +|||+|++||||||++ ++|+||++||+|++.+++++ |+.+++++||+.| +++
T Consensus 104 v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ 183 (241)
T 1ryp_D 104 VEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPP 183 (241)
T ss_dssp HHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCC
T ss_pred HHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCC
Confidence 999999999999864 2 5899999999999975 68999999999999999887 7799999999999 888
Q ss_pred hhh--hhHHHhhhHHH
Q 030209 152 VRQ--CSSLIWNPMSC 165 (181)
Q Consensus 152 l~~--~~~l~~~~~~~ 165 (181)
|+. +.+++.++|..
T Consensus 184 ms~eea~~l~~~al~~ 199 (241)
T 1ryp_D 184 ATVEECVKLTVRSLLE 199 (241)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 775 45566655443
No 18
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=6.8e-39 Score=264.04 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=147.0
Q ss_pred cccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhh-----hhC
Q 030209 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL-----REE 79 (181)
Q Consensus 5 ~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~~ 79 (181)
..+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++|+++|..+|++.|++++|.+++.|++ +++
T Consensus 38 v~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~ 117 (266)
T 1g0u_M 38 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAE 117 (266)
T ss_dssp CEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTT
T ss_pred cccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcC
Confidence 457999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred CCCCHHHHHHHHHHHHHhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC---
Q 030209 80 RDMKPETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV--- 150 (181)
Q Consensus 80 ~~i~~~~la~~is~~ly~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~--- 150 (181)
.+++++.+|+++++++|++| +|||+|++||||||++++|+||.+||+|++.+++++ |+.+++++||+.|++
T Consensus 118 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 197 (266)
T 1g0u_M 118 EALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESD 197 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGG
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhccccc
Confidence 99999999999999999876 799999999999998778999999999999999887 789999999999998
Q ss_pred --Chhh--hhHHHhhhH
Q 030209 151 --PVRQ--CSSLIWNPM 163 (181)
Q Consensus 151 --~l~~--~~~l~~~~~ 163 (181)
+|+. +.+++.++|
T Consensus 198 ~~~ms~eeA~~la~~al 214 (266)
T 1g0u_M 198 IPKTTVQVAEEAIVNAM 214 (266)
T ss_dssp GGGCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 7764 555555443
No 19
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.4e-38 Score=258.70 Aligned_cols=161 Identities=15% Similarity=0.209 Sum_probs=145.8
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.+++
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 106 (244)
T 1ryp_C 27 SISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIP 106 (244)
T ss_dssp HHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35689999999999999999999999987776899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--c--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh-
Q 030209 84 PETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 84 ~~~la~~is~~ly~--~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++.+|++++++++. + ++|||+|++||||||+++||+||.+||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 107 v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 186 (244)
T 1ryp_C 107 VEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVD 186 (244)
T ss_dssp HHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHH
Confidence 99999999999943 3 3789999999999995568999999999999999887 7899999999999998874
Q ss_pred -hhHHHhhhHH
Q 030209 155 -CSSLIWNPMS 164 (181)
Q Consensus 155 -~~~l~~~~~~ 164 (181)
+.+++.++|.
T Consensus 187 ea~~la~~al~ 197 (244)
T 1ryp_C 187 DAIELALKTLS 197 (244)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 4555554443
No 20
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.8e-38 Score=258.49 Aligned_cols=157 Identities=16% Similarity=0.238 Sum_probs=143.3
Q ss_pred cc-CceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 030209 6 YN-GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (181)
Q Consensus 6 ~~-g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~ 84 (181)
.+ |+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.++++
T Consensus 33 ~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 111 (246)
T 1iru_A 33 NQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPV 111 (246)
T ss_dssp HTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred hcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 44 9999999999999999999998 688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC--Chhh
Q 030209 85 ETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV--PVRQ 154 (181)
Q Consensus 85 ~~la~~is~~l--y~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~--~l~~ 154 (181)
+.+|+++++++ |+++ +|||+|++||||||+++||+||++||+|++.+++++ |+.+++++||+.|++ +|+.
T Consensus 112 ~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~ 191 (246)
T 1iru_A 112 DMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTF 191 (246)
T ss_dssp HHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCH
Confidence 99999999985 6654 799999999999998678999999999999999887 889999999999998 8774
Q ss_pred --hhHHHhhhH
Q 030209 155 --CSSLIWNPM 163 (181)
Q Consensus 155 --~~~l~~~~~ 163 (181)
+.+++.+++
T Consensus 192 eea~~la~~al 202 (246)
T 1iru_A 192 EQTVETAITCL 202 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 445555443
No 21
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2.7e-38 Score=249.96 Aligned_cols=156 Identities=19% Similarity=0.349 Sum_probs=142.1
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++++++++.+|
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-Hhcc-CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHh
Q 030209 89 SLVSALL-YEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIW 160 (181)
Q Consensus 89 ~~is~~l-y~~r-~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~ 160 (181)
+++++.+ |..+ .+||++++||||||++++|+||.+||+|++.+++++ |+.+++++||+.|+++|+. +.+++.
T Consensus 82 ~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~ 161 (201)
T 1iru_K 82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLR 161 (201)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 9999876 5433 479999999999998678999999999999999887 7789999999999998774 556655
Q ss_pred hhHH
Q 030209 161 NPMS 164 (181)
Q Consensus 161 ~~~~ 164 (181)
+++.
T Consensus 162 ~al~ 165 (201)
T 1iru_K 162 KCLE 165 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 22
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.4e-38 Score=255.70 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=144.1
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
..++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|+++++++++|..||++.+.++++.+++.|+++++.+++
T Consensus 30 av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 108 (233)
T 1yar_A 30 AVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVN 108 (233)
T ss_dssp HHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3568999999999999999999999985 678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc----CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh-
Q 030209 84 PETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 84 ~~~la~~is~~ly~~r----~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++.+|+++++++|.++ .|||+|++||||||+ +||+||.+||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 109 v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e 187 (233)
T 1yar_A 109 IENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEK 187 (233)
T ss_dssp HHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHH
Confidence 9999999999997542 689999999999997 57999999999999999887 7899999999999988875
Q ss_pred -hhHHHhhhHH
Q 030209 155 -CSSLIWNPMS 164 (181)
Q Consensus 155 -~~~l~~~~~~ 164 (181)
+.+++.+++.
T Consensus 188 ea~~la~~al~ 198 (233)
T 1yar_A 188 EAVTLGIKALK 198 (233)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 4455554443
No 23
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.9e-38 Score=260.59 Aligned_cols=160 Identities=12% Similarity=0.119 Sum_probs=146.5
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.+++
T Consensus 27 av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 106 (261)
T 1iru_C 27 AIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIP 106 (261)
T ss_dssp HHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35689999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc----CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC-Chhh
Q 030209 84 PETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV-PVRQ 154 (181)
Q Consensus 84 ~~~la~~is~~ly~~r----~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~-~l~~ 154 (181)
++.+|+++++++|.++ +|||+|++||||||+++||+||.+||+|++.+++++ |+.+++++||+.|++ +|+.
T Consensus 107 v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~ 186 (261)
T 1iru_C 107 CEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTL 186 (261)
T ss_dssp HHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCH
T ss_pred HHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCH
Confidence 9999999999997653 789999999999997668999999999999999887 779999999999999 8774
Q ss_pred --hhHHHhhhH
Q 030209 155 --CSSLIWNPM 163 (181)
Q Consensus 155 --~~~l~~~~~ 163 (181)
+.+++.++|
T Consensus 187 eeA~~la~~al 197 (261)
T 1iru_C 187 KSALALAIKVL 197 (261)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 455555444
No 24
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.7e-38 Score=259.04 Aligned_cols=160 Identities=15% Similarity=0.230 Sum_probs=144.7
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||||+|+|.+.+ ++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.+|+
T Consensus 25 av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (248)
T 1iru_D 25 AVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVT 103 (248)
T ss_dssp HHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3568999999999999999999999987 677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--c--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCCh--h
Q 030209 84 PETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPV--R 153 (181)
Q Consensus 84 ~~~la~~is~~ly~~--r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l--~ 153 (181)
++.+|++++++++.+ + .|||+|++||||||++++|+||.+||+|++.+++++ |+.+++++||+.|+++| +
T Consensus 104 v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s 183 (248)
T 1iru_D 104 VEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIET 183 (248)
T ss_dssp HHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCS
T ss_pred HHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCC
Confidence 999999999999654 2 689999999999996678999999999999999887 88999999999999888 6
Q ss_pred h--hhHHHhhhHH
Q 030209 154 Q--CSSLIWNPMS 164 (181)
Q Consensus 154 ~--~~~l~~~~~~ 164 (181)
. +.+++.++|.
T Consensus 184 ~eea~~la~~al~ 196 (248)
T 1iru_D 184 DDLTIKLVIKALL 196 (248)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4 4455554443
No 25
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.7e-38 Score=255.42 Aligned_cols=158 Identities=15% Similarity=0.238 Sum_probs=143.5
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
..++|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|+++++.+++
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 105 (233)
T 1iru_B 27 AVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIP 105 (233)
T ss_dssp HHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35689999999999999999999998 68888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh-
Q 030209 84 PETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 84 ~~~la~~is~~l--y~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++.+|+++++++ |+++ +|||+|++||||||+ +||+||.+||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 106 v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~e 184 (233)
T 1iru_B 106 TAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELE 184 (233)
T ss_dssp HHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHH
Confidence 999999999999 4443 799999999999994 57999999999999999887 7899999999999988775
Q ss_pred -hhHHHhhhH
Q 030209 155 -CSSLIWNPM 163 (181)
Q Consensus 155 -~~~l~~~~~ 163 (181)
+.+++.++|
T Consensus 185 ea~~la~~al 194 (233)
T 1iru_B 185 DAIHTAILTL 194 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 445555443
No 26
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.7e-38 Score=257.94 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=144.8
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||||+|+|.+.|.++ +++.+|||+|+++++++++|..||++.++++++.+++.|+++++.+++
T Consensus 22 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 100 (242)
T 1ryp_E 22 AIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDIN 100 (242)
T ss_dssp HHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3568999999999999999999999998776 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--c--------CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCC
Q 030209 84 PETFASLVSALLYEK--R--------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFM 149 (181)
Q Consensus 84 ~~~la~~is~~ly~~--r--------~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~ 149 (181)
++.+|+++++++|.+ + .|||+|++||||||+++||+||.+||+|++.+++++ |+.+++++||+.|+
T Consensus 101 v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (242)
T 1ryp_E 101 VESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH 180 (242)
T ss_dssp HHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhc
Confidence 999999999998653 1 689999999999996668999999999999999887 77999999999999
Q ss_pred CChhh--hhHHHhhhHH
Q 030209 150 VPVRQ--CSSLIWNPMS 164 (181)
Q Consensus 150 ~~l~~--~~~l~~~~~~ 164 (181)
++|+. +.+++.++|.
T Consensus 181 ~~ms~eea~~la~~al~ 197 (242)
T 1ryp_E 181 SSLTLKEAELLVLKILK 197 (242)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 98875 4455554443
No 27
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.9e-38 Score=259.67 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=143.8
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||||+|+|.+.+.++ .++.+|||+|+++++|+++|..||++.++++++.+++.|+++++.+|+
T Consensus 29 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 107 (254)
T 1iru_G 29 AVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIP 107 (254)
T ss_dssp HHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4578999999999999999999999998877 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc----CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh-
Q 030209 84 PETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 84 ~~~la~~is~~ly~~r----~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++.+|+++++++|.++ +|||+|++||||||+++||+||++||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 108 v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 187 (254)
T 1iru_G 108 LKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCR 187 (254)
T ss_dssp HHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHH
T ss_pred HHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHH
Confidence 9999999999996553 799999999999996668999999999999999987 7899999999998887764
Q ss_pred -hhHHHhhhH
Q 030209 155 -CSSLIWNPM 163 (181)
Q Consensus 155 -~~~l~~~~~ 163 (181)
+.+++.++|
T Consensus 188 ea~~la~~al 197 (254)
T 1iru_G 188 DIVKEVAKII 197 (254)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 445544444
No 28
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=6.4e-38 Score=253.82 Aligned_cols=155 Identities=15% Similarity=0.198 Sum_probs=143.3
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.+++++.+|
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc---CCccceEEEEEEEcCCCC-----cEEEEECCCCceeec--Ccc----chhhHHHHHHhhCCCChhh
Q 030209 89 SLVSALLYEKR---FGPYFCQPVIAGLSDEDK-----PFICTMDSIGAKYVG--SLQ----KILLLLELLESLFMVPVRQ 154 (181)
Q Consensus 89 ~~is~~ly~~r---~rP~~vs~ii~G~D~~~~-----p~Ly~iD~~G~~~~~--~~~----g~~~~~~~Le~~~~~~l~~ 154 (181)
+.+++++|.++ +|||+|++||||||++++ |+||++||+|++.++ +++ |+.+++++||+.|+++|+.
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 160 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCH
Confidence 99999998763 799999999999998766 999999999999999 776 7899999999999998874
Q ss_pred --hhHHHhhhH
Q 030209 155 --CSSLIWNPM 163 (181)
Q Consensus 155 --~~~l~~~~~ 163 (181)
+.+++.++|
T Consensus 161 eeA~~la~~al 171 (235)
T 1q5q_H 161 ETALRAAIESL 171 (235)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 555555443
No 29
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=6.4e-38 Score=257.70 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=144.1
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+..+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++|+++|..||++.++++++.+++.|+++++++++
T Consensus 25 av~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~ 104 (261)
T 3nzj_H 25 ATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPR 104 (261)
T ss_dssp -----CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred ccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhH
Q 030209 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSS 157 (181)
Q Consensus 84 ~~~la~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~ 157 (181)
++.+++++++.+|.+ .+||++++||||||++ ||+||++||+|++.+++++ |+.+++++||+.|+++|+. +.+
T Consensus 105 v~~~a~~l~~~l~~~-~~~~gv~llvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~ 182 (261)
T 3nzj_H 105 VVSALQMLKQHLFKY-QGHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIK 182 (261)
T ss_dssp HHHHHHHHHHHHHHT-TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCcccEEEEEEEEeCC-CCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHH
Confidence 999999999999876 4699999999999975 6999999999999999987 7899999999999998885 445
Q ss_pred HHhhhHHHHHHH
Q 030209 158 LIWNPMSCLKLY 169 (181)
Q Consensus 158 l~~~~~~~~~~~ 169 (181)
++. +|++..
T Consensus 183 la~---~al~~a 191 (261)
T 3nzj_H 183 LAS---DAIQAG 191 (261)
T ss_dssp HHH---HHHHHH
T ss_pred HHH---HHHHHH
Confidence 554 555533
No 30
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=6.2e-38 Score=254.56 Aligned_cols=159 Identities=17% Similarity=0.213 Sum_probs=144.0
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
...+|+|+|||+++||||||+|+|.+.|.++ +++.+||++|+++++++++|..||++.++++++.+++.|+++++.+++
T Consensus 30 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 108 (241)
T 1iru_E 30 AIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMT 108 (241)
T ss_dssp HHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3568999999999999999999999998877 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhcc-------CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC
Q 030209 84 PETFASLVSALL--YEKR-------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV 150 (181)
Q Consensus 84 ~~~la~~is~~l--y~~r-------~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~ 150 (181)
++.+|+++++++ |+++ .|||+|++|||||| ++||+||.+||+|++.+++++ |+.+++++||+.|++
T Consensus 109 v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 187 (241)
T 1iru_E 109 VESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHK 187 (241)
T ss_dssp HHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhcc
Confidence 999999999998 5443 58999999999999 568999999999999999887 789999999999999
Q ss_pred Chhh--hhHHHhhhHH
Q 030209 151 PVRQ--CSSLIWNPMS 164 (181)
Q Consensus 151 ~l~~--~~~l~~~~~~ 164 (181)
+|+. +.+++.+++.
T Consensus 188 ~ms~eea~~la~~al~ 203 (241)
T 1iru_E 188 SMTLKEAIKSSLIILK 203 (241)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8775 5555554443
No 31
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.2e-37 Score=252.32 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=142.8
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++|+++|..||++.+.++++.+++.|+++++++++++.+|
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHhhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIWNP 162 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~~ 162 (181)
+++++++|.+ .+||++++||||||++ ||+||++||+|++.+++++ |+.+++++||+.|+++|+. +.+++.
T Consensus 81 ~~l~~~l~~~-~~p~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~-- 156 (234)
T 3unf_H 81 RILRQTLFRY-QGHVGASLVVGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLV-- 156 (234)
T ss_dssp HHHHHHHHHT-TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHH--
T ss_pred HHHHHHHHhc-CCCccEEEEEEEEeCC-CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHH--
Confidence 9999999876 4699999999999975 7999999999999999987 7899999999999998875 455555
Q ss_pred HHHHH
Q 030209 163 MSCLK 167 (181)
Q Consensus 163 ~~~~~ 167 (181)
+|++
T Consensus 157 -~al~ 160 (234)
T 3unf_H 157 -EAIT 160 (234)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5555
No 32
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.7e-37 Score=249.30 Aligned_cols=154 Identities=17% Similarity=0.237 Sum_probs=142.5
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHhhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIWNP 162 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~~ 162 (181)
+++++.+|.++ |||++++||||||+ +||+||.+||+|++.+++++ |+.+++++||+.|+++|+. +.+++.++
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~a 158 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDA 158 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Confidence 99999998874 79999999999997 47999999999999999887 7799999999999988874 55666544
Q ss_pred HH
Q 030209 163 MS 164 (181)
Q Consensus 163 ~~ 164 (181)
|.
T Consensus 159 l~ 160 (222)
T 1ryp_I 159 IQ 160 (222)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.3e-37 Score=259.82 Aligned_cols=161 Identities=16% Similarity=0.187 Sum_probs=148.0
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+..+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++|+++|..+|++.++++++.+++.|+++++.+++
T Consensus 61 Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~is 140 (294)
T 1q5r_H 61 LAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 140 (294)
T ss_dssp CSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc---CCccceEEEEEEEcCCCC-----cEEEEECCCCceeec--Ccc----chhhHHHHHHhhCC
Q 030209 84 PETFASLVSALLYEKR---FGPYFCQPVIAGLSDEDK-----PFICTMDSIGAKYVG--SLQ----KILLLLELLESLFM 149 (181)
Q Consensus 84 ~~~la~~is~~ly~~r---~rP~~vs~ii~G~D~~~~-----p~Ly~iD~~G~~~~~--~~~----g~~~~~~~Le~~~~ 149 (181)
++.+|+++++++|.++ +|||+|++||||||++++ |+||++||+|++.++ +++ |+.+++++||+.|+
T Consensus 141 v~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~ 220 (294)
T 1q5r_H 141 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS 220 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhcc
Confidence 9999999999998753 699999999999998756 999999999999999 776 78999999999999
Q ss_pred CChhh--hhHHHhhhHHHHH
Q 030209 150 VPVRQ--CSSLIWNPMSCLK 167 (181)
Q Consensus 150 ~~l~~--~~~l~~~~~~~~~ 167 (181)
++|+. +.+++. +|++
T Consensus 221 ~~ms~eEAi~la~---~aL~ 237 (294)
T 1q5r_H 221 PDSDEETALRAAI---ESLY 237 (294)
T ss_dssp SSCCHHHHHHHHH---HHHH
T ss_pred CCCCHHHHHHHHH---HHHH
Confidence 98874 455555 5555
No 34
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.2e-38 Score=259.84 Aligned_cols=159 Identities=19% Similarity=0.302 Sum_probs=143.9
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+..+|+|+|||+++||||||+|+|.+.+ ++.+++.+|||+|+++++|+++|..||++.++++++.+++.|+++++.+++
T Consensus 34 av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~ 112 (264)
T 3h4p_A 34 AVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEIS 112 (264)
T ss_dssp HHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence 3468999999999999999999999985 678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--cc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh-
Q 030209 84 PETFASLVSALLYE--KR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ- 154 (181)
Q Consensus 84 ~~~la~~is~~ly~--~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~- 154 (181)
++.+|++++++++. ++ +|||+|++||||||+ +||+||++||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 113 v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 191 (264)
T 3h4p_A 113 IEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLD 191 (264)
T ss_dssp HHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHH
Confidence 99999999999854 32 689999999999996 57999999999999999887 7799999999999998874
Q ss_pred -hhHHHhhhHH
Q 030209 155 -CSSLIWNPMS 164 (181)
Q Consensus 155 -~~~l~~~~~~ 164 (181)
+.+++.++|.
T Consensus 192 ea~~la~~al~ 202 (264)
T 3h4p_A 192 EGLELAITALT 202 (264)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5566554443
No 35
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.7e-37 Score=253.36 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=143.8
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHH-hhhhhCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKL-YQLREERDM 82 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~-~~~~~~~~i 82 (181)
...+|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++++|..||++.++++++.+++. |++.++.++
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 105 (250)
T 1ryp_B 27 AVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYP 105 (250)
T ss_dssp HHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCC
T ss_pred HHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35689999999999999999999998 7889999999999999999999999999999999999999999 999999999
Q ss_pred CHHHHHHHHHHHHHh--c--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh
Q 030209 83 KPETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ 154 (181)
Q Consensus 83 ~~~~la~~is~~ly~--~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~ 154 (181)
+++.+++.+++++.. + ++|||+|++||||||+++||+||.+||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 106 ~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 185 (250)
T 1ryp_B 106 PTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELEL 185 (250)
T ss_dssp CHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred CHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCH
Confidence 999999999998743 2 3689999999999998678999999999999999987 7799999999999998875
Q ss_pred --hhHHHhhhHH
Q 030209 155 --CSSLIWNPMS 164 (181)
Q Consensus 155 --~~~l~~~~~~ 164 (181)
|.+++.++|.
T Consensus 186 eea~~la~~al~ 197 (250)
T 1ryp_B 186 EDAIHIALLTLK 197 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 4455554443
No 36
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.4e-37 Score=250.96 Aligned_cols=159 Identities=18% Similarity=0.263 Sum_probs=143.0
Q ss_pred cccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 030209 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (181)
Q Consensus 5 ~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~ 84 (181)
..+|+|+|||+++||||||+|+|.+.+ ++.+++.+|||+|+++++++++|..||++.++++++.+++.|+++++.++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (246)
T 1j2p_A 31 VKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITV 109 (246)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 568999999999999999999999985 5668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--
Q 030209 85 ETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ-- 154 (181)
Q Consensus 85 ~~la~~is~~l--y~~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~-- 154 (181)
+.+|+++++++ |+++ .|||++++|||||| +||+||.+||+|++.+++++ |+.+++++||+.|+++|+.
T Consensus 110 ~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee 187 (246)
T 1j2p_A 110 KELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDD 187 (246)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHH
Confidence 99999999999 4443 68999999999999 57999999999999999877 7899999999999988774
Q ss_pred hhHHHhhhHHHH
Q 030209 155 CSSLIWNPMSCL 166 (181)
Q Consensus 155 ~~~l~~~~~~~~ 166 (181)
+.+++.+++..+
T Consensus 188 a~~la~~al~~~ 199 (246)
T 1j2p_A 188 AMVLGLVAMGLS 199 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556665444433
No 37
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.9e-37 Score=251.29 Aligned_cols=159 Identities=12% Similarity=0.100 Sum_probs=141.8
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+..+|+|+|||+++||||||+|+|.+++.++.++ .+|||+|+++++++++|..+|++.++++++.+++.|+++++.+++
T Consensus 26 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 104 (244)
T 1ryp_G 26 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIP 104 (244)
T ss_dssp HHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3578999999999999999999999998877655 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--cc--CCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhh---CCCCh
Q 030209 84 PETFASLVSALLYE--KR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESL---FMVPV 152 (181)
Q Consensus 84 ~~~la~~is~~ly~--~r--~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~---~~~~l 152 (181)
++.+|++++++++. ++ +|||++++||||||+ +||+||.+||+|++.+++++ |+.+++++||+. |+++|
T Consensus 105 v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~m 183 (244)
T 1ryp_G 105 IPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 183 (244)
T ss_dssp HHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCC
Confidence 99999999999944 33 699999999999996 57999999999999999887 779999999997 88877
Q ss_pred hh--hhHHHhhhHHHHH
Q 030209 153 RQ--CSSLIWNPMSCLK 167 (181)
Q Consensus 153 ~~--~~~l~~~~~~~~~ 167 (181)
+. +.+++. +|++
T Consensus 184 s~eea~~la~---~al~ 197 (244)
T 1ryp_G 184 SAREAVKQAA---KIIY 197 (244)
T ss_dssp CHHHHHHHHH---HHHH
T ss_pred CHHHHHHHHH---HHHH
Confidence 74 444444 5555
No 38
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.5e-37 Score=257.38 Aligned_cols=159 Identities=12% Similarity=0.106 Sum_probs=143.3
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
+..+|+|+|||+++||||||+|+|.+.+.++.+ +.+|||+|+++++|+++|..+|++.|++++|.+++.|+++++.+|+
T Consensus 30 Av~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~ 108 (288)
T 3nzj_F 30 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIP 108 (288)
T ss_dssp HHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 456899999999999999999999999877654 6799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc----cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhh---CCCCh
Q 030209 84 PETFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESL---FMVPV 152 (181)
Q Consensus 84 ~~~la~~is~~ly~~----r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~---~~~~l 152 (181)
++.+|++++++++.+ ++|||+|++||||||++ ||+||++||+|++.+++++ |+.+++++||+. |+++|
T Consensus 109 v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~m 187 (288)
T 3nzj_F 109 IPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 187 (288)
T ss_dssp HHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT-EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCC-CCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCC
Confidence 999999999999643 37999999999999984 6999999999999999887 889999999999 88888
Q ss_pred hh--hhHHHhhhHH
Q 030209 153 RQ--CSSLIWNPMS 164 (181)
Q Consensus 153 ~~--~~~l~~~~~~ 164 (181)
+. +.+++.++|.
T Consensus 188 s~eEAv~la~~al~ 201 (288)
T 3nzj_F 188 SAREAVKQAAKIIY 201 (288)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 75 4555554443
No 39
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=5.9e-37 Score=241.77 Aligned_cols=153 Identities=17% Similarity=0.315 Sum_probs=140.0
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.+.++++.+++.|+++++.+++++.+|
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecC-cc----chhhHHHHHHhhCCCChhh--hhHHHhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGS-LQ----KILLLLELLESLFMVPVRQ--CSSLIWN 161 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~-~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~ 161 (181)
+++++++|.+| |||++++||||||++++|+||+ |+|++.++. ++ |+.+++++||+.|+++|+. +.+++.
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~- 156 (199)
T 3unf_N 81 NVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTT- 156 (199)
T ss_dssp HHHHHHHHHTT-TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHH-
T ss_pred HHHHHHHHhcC-CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHH-
Confidence 99999999874 6999999999999877899999 999987764 43 7899999999999998885 455555
Q ss_pred hHHHHH
Q 030209 162 PMSCLK 167 (181)
Q Consensus 162 ~~~~~~ 167 (181)
++++
T Consensus 157 --~al~ 160 (199)
T 3unf_N 157 --NAIT 160 (199)
T ss_dssp --HHHH
T ss_pred --HHHH
Confidence 5555
No 40
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=5.1e-37 Score=250.66 Aligned_cols=155 Identities=13% Similarity=0.152 Sum_probs=137.5
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhC-CCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDM 82 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~i 82 (181)
...+|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|..+|++.|.+.++.+++.|+++++ .++
T Consensus 23 av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i 94 (248)
T 3mi0_A 23 GIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDV 94 (248)
T ss_dssp HHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 346899999999999999999998 45789999999999999999999999999999999999999999 899
Q ss_pred CHHHHHHHHHHHH---HhccCCccceEEEEEEEcC---CCCcEEEEECCCCceee-cCcc----chhhHHHHHHhhCCCC
Q 030209 83 KPETFASLVSALL---YEKRFGPYFCQPVIAGLSD---EDKPFICTMDSIGAKYV-GSLQ----KILLLLELLESLFMVP 151 (181)
Q Consensus 83 ~~~~la~~is~~l---y~~r~rP~~vs~ii~G~D~---~~~p~Ly~iD~~G~~~~-~~~~----g~~~~~~~Le~~~~~~ 151 (181)
+++.+++++++.+ |++++|||+|++||||||+ ++||+||++||+|++.+ ++++ |+.+++++||+.|+++
T Consensus 95 ~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~ 174 (248)
T 3mi0_A 95 TGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAEN 174 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCC
Confidence 9999999999553 6667899999999999997 46899999999999995 9887 8899999999999999
Q ss_pred hhh--hhHHHhhhHHHHHHH
Q 030209 152 VRQ--CSSLIWNPMSCLKLY 169 (181)
Q Consensus 152 l~~--~~~l~~~~~~~~~~~ 169 (181)
|+. +.+++. +|++..
T Consensus 175 mt~eeai~la~---~aL~~~ 191 (248)
T 3mi0_A 175 ASLTDALRIAV---AALRAG 191 (248)
T ss_dssp CCHHHHHHHHH---HHHHHC
T ss_pred CCHHHHHHHHH---HHHHHH
Confidence 875 445544 454433
No 41
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=3.1e-37 Score=257.18 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=135.7
Q ss_pred cccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 030209 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (181)
Q Consensus 5 ~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~ 84 (181)
..+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++|+++|..||++.++++++.+++.|+++++.++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 57899999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc---CCccceEEEEEEEcCCCC-----cEEEEECCCCcee--ecCcc----chhhHHHHHHhhCCC
Q 030209 85 ETFASLVSALLYEKR---FGPYFCQPVIAGLSDEDK-----PFICTMDSIGAKY--VGSLQ----KILLLLELLESLFMV 150 (181)
Q Consensus 85 ~~la~~is~~ly~~r---~rP~~vs~ii~G~D~~~~-----p~Ly~iD~~G~~~--~~~~~----g~~~~~~~Le~~~~~ 150 (181)
+.+|+++++++|.++ +|||+|++||||||++++ |+||++||+|++. +++++ |+.+++++||+.|++
T Consensus 134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~ 213 (291)
T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQ 213 (291)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCC
Confidence 999999999998764 689999999999998766 9999999999998 77776 789999999999998
Q ss_pred Chhh--hhHHHhhhHH
Q 030209 151 PVRQ--CSSLIWNPMS 164 (181)
Q Consensus 151 ~l~~--~~~l~~~~~~ 164 (181)
+|+. +.+++.++|.
T Consensus 214 ~ms~eEAi~la~~aL~ 229 (291)
T 2jay_A 214 VTDGDSGLRVAVEALY 229 (291)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8875 4455554443
No 42
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.4e-36 Score=246.02 Aligned_cols=153 Identities=16% Similarity=0.216 Sum_probs=141.5
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 88 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..||++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCCChhh--hhHHHhhh
Q 030209 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMVPVRQ--CSSLIWNP 162 (181)
Q Consensus 89 ~~is~~ly~~r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~~l~~--~~~l~~~~ 162 (181)
+++++.+|.++ +||++++||||||+ +||+||.+||+|++.+++++ |+.+++++||+.|+++|+. |.+++.++
T Consensus 81 ~~l~~~l~~~~-~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~a 158 (234)
T 1iru_I 81 RMLKQMLFRYR-GYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEA 158 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHH
T ss_pred HHHHHHHHhcC-CCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 99999998774 69999999999997 47999999999999999887 8899999999999998774 55555544
Q ss_pred H
Q 030209 163 M 163 (181)
Q Consensus 163 ~ 163 (181)
+
T Consensus 159 l 159 (234)
T 1iru_I 159 I 159 (234)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=5.6e-37 Score=247.80 Aligned_cols=164 Identities=17% Similarity=0.141 Sum_probs=143.5
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
..++|+|+|||+++||||||+|+|.+.+.. ++.+|||+|+++++++++|..||++.++++++.+++.|+++++.+|+
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (233)
T 1ryp_F 27 AIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLA 103 (233)
T ss_dssp HHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 356899999999999999999999998742 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hc--cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC--Ch-
Q 030209 84 PETFASLVSALLY--EK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV--PV- 152 (181)
Q Consensus 84 ~~~la~~is~~ly--~~--r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~--~l- 152 (181)
++.+|++++++++ ++ +.|||+|++||||||+ +||+||++||+|++.+++++ |+.+++++||+.|++ +|
T Consensus 104 v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~ 182 (233)
T 1ryp_F 104 VERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKID 182 (233)
T ss_dssp HHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccC
Confidence 9999999999994 33 3789999999999997 47999999999999999887 889999999999887 77
Q ss_pred -hhhhHHHhhhHHHHHHHHHH
Q 030209 153 -RQCSSLIWNPMSCLKLYLKL 172 (181)
Q Consensus 153 -~~~~~l~~~~~~~~~~~~~~ 172 (181)
+. +++++.++++++...|+
T Consensus 183 ~s~-eea~~~a~~al~~~~~d 202 (233)
T 1ryp_F 183 GNP-DELIKAGVEAISQSLRD 202 (233)
T ss_dssp SCH-HHHHHHHHHHHTTSCCS
T ss_pred CCH-HHHHHHHHHHHHHHhhc
Confidence 54 34445555666643343
No 44
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.6e-36 Score=249.48 Aligned_cols=156 Identities=18% Similarity=0.154 Sum_probs=139.4
Q ss_pred cccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 030209 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (181)
Q Consensus 5 ~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~ 84 (181)
.++|+|+|||+++||||||+|+|.+.+. .++.+|||+|+++++++++|..||++.++++++.+++.|+++++.+|++
T Consensus 29 v~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v 105 (263)
T 1iru_F 29 VKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPV 105 (263)
T ss_dssp HHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 4679999999999999999999999874 2478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCccceEEEEEEEcCCCCcEEEEECCCCceeecCcc----chhhHHHHHHhhCCC--Chhh
Q 030209 85 ETFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGSLQ----KILLLLELLESLFMV--PVRQ 154 (181)
Q Consensus 85 ~~la~~is~~ly~~----r~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~----g~~~~~~~Le~~~~~--~l~~ 154 (181)
+.+|+++++++|.+ ..|||+|++||||||+ +||+||++||+|++.+++++ |+.+++++||+.|++ +|+.
T Consensus 106 ~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~ 184 (263)
T 1iru_F 106 SRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNL 184 (263)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCH
Confidence 99999999999642 2789999999999997 57999999999999999887 789999999999886 7664
Q ss_pred --hhHHHhhhHHHHH
Q 030209 155 --CSSLIWNPMSCLK 167 (181)
Q Consensus 155 --~~~l~~~~~~~~~ 167 (181)
+.+++. ++++
T Consensus 185 eea~~la~---~al~ 196 (263)
T 1iru_F 185 NELVKHGL---RALR 196 (263)
T ss_dssp HHHHHHHH---HHHH
T ss_pred HHHHHHHH---HHHH
Confidence 444444 5554
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1.5e-35 Score=243.31 Aligned_cols=152 Identities=12% Similarity=0.197 Sum_probs=135.6
Q ss_pred ccccCceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEecCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhC-CCC
Q 030209 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDM 82 (181)
Q Consensus 4 ~~~~g~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~i 82 (181)
...+|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|..+|++.|+++++.+++.|++.++ .+|
T Consensus 23 av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i 94 (259)
T 1q5q_A 23 GIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDV 94 (259)
T ss_dssp HHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 356899999999999999999998 36789999999999999999999999999999999999999987 499
Q ss_pred CHHHHHHHHHHH---HHhccCCccceEEEEEEEc--C-CCCcEEEEECCCCcee-ecCcc----chhhHHHHHHhhCCCC
Q 030209 83 KPETFASLVSAL---LYEKRFGPYFCQPVIAGLS--D-EDKPFICTMDSIGAKY-VGSLQ----KILLLLELLESLFMVP 151 (181)
Q Consensus 83 ~~~~la~~is~~---ly~~r~rP~~vs~ii~G~D--~-~~~p~Ly~iD~~G~~~-~~~~~----g~~~~~~~Le~~~~~~ 151 (181)
+++.+|++++++ .|++++|||+|++|||||| + ++||+||++||+|++. +++++ |+.+++++||+.|+++
T Consensus 95 ~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ 174 (259)
T 1q5q_A 95 TGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRAD 174 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCC
Confidence 999999999996 4776789999999999999 3 5689999999999999 77776 8899999999999998
Q ss_pred hhh--hhHHHhhhH
Q 030209 152 VRQ--CSSLIWNPM 163 (181)
Q Consensus 152 l~~--~~~l~~~~~ 163 (181)
|+. +.+++.++|
T Consensus 175 ms~eea~~la~~al 188 (259)
T 1q5q_A 175 LDLEAAVGIAVNAL 188 (259)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 875 445555333
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=6.5e-33 Score=214.20 Aligned_cols=145 Identities=12% Similarity=0.175 Sum_probs=127.2
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEe-cCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~l 87 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+| +++++++++|..||++.+.+++|.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999999999999999999 99999999999999999999999999998855 26776
Q ss_pred HHHHHHHHHhcc-CCccceEEEEEEEcCCCCcEEEEECCCCceeecC--cc----chhhHHHHHHhhCC-CChhhhhHHH
Q 030209 88 ASLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGS--LQ----KILLLLELLESLFM-VPVRQCSSLI 159 (181)
Q Consensus 88 a~~is~~ly~~r-~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~--~~----g~~~~~~~Le~~~~-~~l~~~~~l~ 159 (181)
++. .+.+|+++ .|||+++++++ | ||+||++||+|++.+++ +. |+.+++++||+.|+ ++|+. ++++
T Consensus 76 ~~l-~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~-~~l~ 148 (171)
T 1m4y_A 76 VEL-AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA-REIV 148 (171)
T ss_dssp HHH-HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH-HHHH
T ss_pred HHH-HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH-HHHH
Confidence 665 44677776 56899999998 5 69999999999999987 65 78999999999999 89986 6676
Q ss_pred hhhHHH
Q 030209 160 WNPMSC 165 (181)
Q Consensus 160 ~~~~~~ 165 (181)
.+++..
T Consensus 149 ~~al~~ 154 (171)
T 1m4y_A 149 EKAMTI 154 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 644433
No 47
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=8.5e-33 Score=215.52 Aligned_cols=146 Identities=10% Similarity=0.154 Sum_probs=126.5
Q ss_pred ccCceEEEEEeCCEEEEeEeCCcccCce-eecCCcCceEEe-cCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCC
Q 030209 6 YNGSALVAMVGKNCFAIASDRRLGVQLQ-TIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (181)
Q Consensus 6 ~~g~TvIgi~~~dgVvla~d~~~s~g~~-i~~~~~~Ki~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (181)
.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+|||+| +++++++++|..||++.|.++++.+++.|+ | ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 6799999999999999999999999888 999999999999 999999999999999999999999999987 3 33
Q ss_pred HHHHHHHHHHHHHhcc-CCccceEEEEEEEcCCCCcEEEEECCCCceeec--Ccc----chhhHHHHHHhhCCC---Chh
Q 030209 84 PETFASLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVG--SLQ----KILLLLELLESLFMV---PVR 153 (181)
Q Consensus 84 ~~~la~~is~~ly~~r-~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~--~~~----g~~~~~~~Le~~~~~---~l~ 153 (181)
++..+ .+++.+++++ +|||++++||+ | +|+||++||+|++.++ ++. |+.+++++||+.|++ +|+
T Consensus 78 ~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt 151 (180)
T 2z3b_A 78 KRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMS 151 (180)
T ss_dssp HHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCC
Confidence 44443 5677776655 68999999999 4 5999999999999984 665 889999999999987 888
Q ss_pred hhhHHHhhhH
Q 030209 154 QCSSLIWNPM 163 (181)
Q Consensus 154 ~~~~l~~~~~ 163 (181)
.+| ++++++
T Consensus 152 ~ee-l~~~al 160 (180)
T 2z3b_A 152 ASE-IARAAL 160 (180)
T ss_dssp HHH-HHHHHH
T ss_pred HHH-HHHHHH
Confidence 766 555333
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.3e-32 Score=211.72 Aligned_cols=146 Identities=10% Similarity=0.135 Sum_probs=128.7
Q ss_pred ceEEEEEeCCEEEEeEeCCcccCceeecCCcCceEEe-cCcEEEEEcCChhHHHHHHHHHHHHHHHhhhhhCCCCCHHHH
Q 030209 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (181)
Q Consensus 9 ~TvIgi~~~dgVvla~d~~~s~g~~i~~~~~~Ki~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~l 87 (181)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+| +++++++++|..||++.|.+++|.+++.|++ +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 5899999999999999999999989999999999999 9999999999999999999999999999875 45666
Q ss_pred HHHHHHHHHhcc-CCccceEEEEEEEcCCCCcEEEEECCCCceeecC---cc----chhhHHHHHHhhCC-CChhhhhHH
Q 030209 88 ASLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGS---LQ----KILLLLELLESLFM-VPVRQCSSL 158 (181)
Q Consensus 88 a~~is~~ly~~r-~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~---~~----g~~~~~~~Le~~~~-~~l~~~~~l 158 (181)
+..+++.++++| +||+ +++++|+| +|+||++||+|++.+++ +. |+.+++++||+.|+ ++|+ ++++
T Consensus 75 ~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt-~~~l 148 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELS-AHEI 148 (174)
T ss_dssp HHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCC-HHHH
T ss_pred HHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCC-HHHH
Confidence 778888888876 5665 57888887 69999999999999987 65 88999999999998 8898 5677
Q ss_pred HhhhHHHH
Q 030209 159 IWNPMSCL 166 (181)
Q Consensus 159 ~~~~~~~~ 166 (181)
+.+++..+
T Consensus 149 ~~~al~~a 156 (174)
T 1g3k_A 149 VEKSLRIA 156 (174)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77555443
No 49
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=24.33 E-value=1.4e+02 Score=20.18 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=20.4
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHhcc------CCcc
Q 030209 73 LYQLREERDMKPETFASLVSALLYEKR------FGPY 103 (181)
Q Consensus 73 ~~~~~~~~~i~~~~la~~is~~ly~~r------~rP~ 103 (181)
..+++.| +++..+|+.+.++.-..| +|||
T Consensus 41 lr~YR~G--~~I~~Fc~kLl~LyG~~Rk~LL~gmRpF 75 (98)
T 4fqn_A 41 LHEYRNG--ASIHEFCINLRQLYGDSRKFLLLGLRPF 75 (98)
T ss_dssp HHHHHTT--CCHHHHHHHHHHHHCGGGGGGGGGGGGG
T ss_pred HHHHHcC--CCHHHHHHHHHHHhchHHHHHHhhccCC
Confidence 4455666 689999988888764444 6777
Done!