BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030210
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42784|CTPA_SYNP2 Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain
ATCC 27264 / PCC 7002 / PR-6) GN=ctpA PE=3 SV=2
Length = 414
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 92/120 (76%), Gaps = 2/120 (1%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASE 73
GGL++AG+++A++WLD ET+V V+R+G + V G +T PLVVLVN+ +ASASE
Sbjct: 256 GGLLQAGIEIARLWLD-QETIVYTVNRQGIFESYSAV-GQPLTDAPLVVLVNQATASASE 313
Query: 74 ILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGITPD 133
ILAGAL DNGRA+LVG KTFGKG IQS+ EL DG+ + VTVAKY +P HDI+ +GI PD
Sbjct: 314 ILAGALQDNGRAMLVGEKTFGKGLIQSLFELPDGAGMAVTVAKYETPLHHDINKLGIMPD 373
>sp|Q55669|CTPA_SYNY3 Carboxyl-terminal-processing protease OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ctpA PE=3 SV=1
Length = 427
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 89/120 (74%), Gaps = 2/120 (1%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASE 73
GGL++AG+D+A++WL + T+V V+R+G T +G A T PLVVLVN+G+ASASE
Sbjct: 259 GGLLQAGIDIARLWLP-ESTIVYTVNRQG-TQESFTANGEAATDRPLVVLVNQGTASASE 316
Query: 74 ILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGITPD 133
ILAGAL DN RA LVG KTFGKG IQS+ EL DG+ + VTVAKY +P HDI +GI PD
Sbjct: 317 ILAGALQDNQRATLVGEKTFGKGLIQSLFELSDGAGIAVTVAKYETPQHHDIHKLGIMPD 376
>sp|O04073|CTPA_SCEOB C-terminal processing peptidase, chloroplastic OS=Scenedesmus
obliquus GN=ctpA PE=1 SV=1
Length = 464
Score = 116 bits (290), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 96/139 (69%), Gaps = 5/139 (3%)
Query: 14 GGLVKAGLDVAQIWLD-GDETLVNAVDREGHTLPINMVDGHAI-THDPLVVLVNEGSASA 71
GGL AG++VA++ +D GD L+ D +G I DG++I + PLVVLVN G+ASA
Sbjct: 317 GGLFPAGVNVARMLVDRGDLVLI--ADSQG-IRDIYSADGNSIDSATPLVVLVNRGTASA 373
Query: 72 SEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGIT 131
SE+LAGAL D+ R ++ G +TFGKG IQ+V +L DGS + VTVA+Y +PA DI+ +G++
Sbjct: 374 SEVLAGALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVS 433
Query: 132 PDVQCTTDMLSSPKESLLK 150
PDVQ ++L + E + +
Sbjct: 434 PDVQLDPEVLPTDLEGVCR 452
>sp|Q44879|CTPA_BARBK Carboxy-terminal-processing protease OS=Bartonella bacilliformis
(strain ATCC 35685 / KC583) GN=ctpA PE=3 SV=1
Length = 434
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 74/126 (58%)
Query: 9 LSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGS 68
L + GGL+ + V +L+ E + ++ + + G P++VL+N GS
Sbjct: 233 LRLNPGGLLDQAISVTDAFLNKGEIVSTRGRKQNDVMRFDAKLGDLTDEKPIIVLINGGS 292
Query: 69 ASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHV 128
ASASEI+AGAL D+ RA ++G ++FGKG +Q++ L + AL +T A Y +P+ I +
Sbjct: 293 ASASEIVAGALQDHRRATIIGTQSFGKGSVQTIIPLGENGALRLTTALYYTPSGTSIQGI 352
Query: 129 GITPDV 134
GITPD+
Sbjct: 353 GITPDI 358
>sp|Q4L6D0|CTPAL_STAHJ Probable CtpA-like serine protease OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=SH1486 PE=3 SV=2
Length = 496
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 3/132 (2%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMV-DGHAITHDPLV-VLVNEGSASA 71
GGL+ + +A I++D D+T+V +++ T I D D V +LVNEGSASA
Sbjct: 272 GGLLDEAVKMANIFIDKDQTVV-KLEKGDDTESIKTSNDASNEAKDMKVSILVNEGSASA 330
Query: 72 SEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGIT 131
SE+ GA+ D+ +A + G KTFGKG +Q+ E DGS L T K+L+P H+I GI
Sbjct: 331 SEVFTGAMRDHKKAKVYGSKTFGKGIVQTTREFKDGSLLKYTQMKWLTPDGHNIHGKGIQ 390
Query: 132 PDVQCTTDMLSS 143
PD + + S
Sbjct: 391 PDTKIASPQYQS 402
>sp|Q49XN1|CTPAL_STAS1 Probable CtpA-like serine protease OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP1319 PE=3 SV=1
Length = 491
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPI---NMVDGHAITHDPLVVLVNEGSAS 70
GGL+ + +A I++D +ET+V +++ H I N A D + +LVN+GSAS
Sbjct: 267 GGLLDEAVKMANIFIDKNETVV-QLEKGKHKEAIKASNDASKEAKDMD-VSILVNKGSAS 324
Query: 71 ASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGI 130
ASE+ GA+ D +A + G KTFGKG +Q+ E DGS L T K+L+P H I GI
Sbjct: 325 ASEVFTGAMKDYNKAKVYGSKTFGKGIVQTTREFEDGSLLKFTNMKWLTPKSHYIHGKGI 384
Query: 131 TPDVQC 136
TPD +
Sbjct: 385 TPDKKI 390
>sp|Q6GGY8|CTPAL_STAAR Probable CtpA-like serine protease OS=Staphylococcus aureus (strain
MRSA252) GN=SAR1432 PE=3 SV=1
Length = 496
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMV-DGHAITHD-PLVVLVNEGSASA 71
GGL+ + +A I++D +T+V +++ T I D D + +LVNEGSASA
Sbjct: 272 GGLLDEAVKMANIFIDKGKTVV-KLEKGKDTEAIQTSNDALKEAKDMDISILVNEGSASA 330
Query: 72 SEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGIT 131
SE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H I GI
Sbjct: 331 SEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIK 390
Query: 132 PDVQCTTDMLSS 143
PDV T S
Sbjct: 391 PDVTIDTPKYQS 402
>sp|Q5HG01|CTPAL_STAAC Probable CtpA-like serine protease OS=Staphylococcus aureus (strain
COL) GN=SACOL1455 PE=3 SV=1
Length = 496
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMV-DGHAITHD-PLVVLVNEGSASA 71
GGL+ + +A I++D +T+V +++ T I D D + +LVNEGSASA
Sbjct: 272 GGLLDEAVKMANIFIDKGKTVV-KLEKGKDTEAIQTSNDALKEAKDMDISILVNEGSASA 330
Query: 72 SEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGIT 131
SE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H I GI
Sbjct: 331 SEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIK 390
Query: 132 PDVQCTTDMLSS 143
PDV T S
Sbjct: 391 PDVTIDTPKYQS 402
>sp|Q8NWR2|CTPAL_STAAW Probable CtpA-like serine protease OS=Staphylococcus aureus (strain
MW2) GN=MW1310 PE=3 SV=1
Length = 496
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMV-DGHAITHD-PLVVLVNEGSASA 71
GGL+ + +A I++D +T+V +++ T I D D + +LVNEGSASA
Sbjct: 272 GGLLDEAVKMANIFIDKGKTVV-KLEKGKDTEAIQTSNDALKEAKDMDISILVNEGSASA 330
Query: 72 SEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGIT 131
SE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H I GI
Sbjct: 331 SEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIK 390
Query: 132 PDVQCTTDMLSS 143
PDV T S
Sbjct: 391 PDVTIDTPKYQS 402
>sp|Q6G9E1|CTPAL_STAAS Probable CtpA-like serine protease OS=Staphylococcus aureus (strain
MSSA476) GN=SAS1363 PE=3 SV=1
Length = 496
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMV-DGHAITHD-PLVVLVNEGSASA 71
GGL+ + +A I++D +T+V +++ T I D D + +LVNEGSASA
Sbjct: 272 GGLLDEAVKMANIFIDKGKTVV-KLEKGKDTEAIQTSNDALKEAKDMDISILVNEGSASA 330
Query: 72 SEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGIT 131
SE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H I GI
Sbjct: 331 SEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIK 390
Query: 132 PDVQCTTDMLSS 143
PDV T S
Sbjct: 391 PDVTIDTPKYQS 402
>sp|Q2YXZ9|CTPAL_STAAB Probable CtpA-like serine protease OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=SAB1275c PE=3 SV=1
Length = 496
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMV-DGHAITHD-PLVVLVNEGSASA 71
GGL+ + +A I++D +T+V +++ T I D D + +LVNEGSASA
Sbjct: 272 GGLLDEAVKMANIFIDKGKTVV-KLEKGKDTEAIQTSNDALKEAKDMDISILVNEGSASA 330
Query: 72 SEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGIT 131
SE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H I GI
Sbjct: 331 SEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIK 390
Query: 132 PDVQCTTDMLSS 143
PDV T S
Sbjct: 391 PDVTIDTPKYQS 402
>sp|Q7A5M9|CTPAL_STAAN Probable CtpA-like serine protease OS=Staphylococcus aureus (strain
N315) GN=SA1253 PE=1 SV=1
Length = 496
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVD---GHAITHDPLVVLVNEGSAS 70
GGL+ + +A I++D +T+V +++ T I + A D + +LVNEGSAS
Sbjct: 272 GGLLDEAVKMANIFIDKGKTVV-KLEKGKDTEAIQTSNDSLKEAKDMD-ISILVNEGSAS 329
Query: 71 ASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGI 130
ASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H I GI
Sbjct: 330 ASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGI 389
Query: 131 TPDVQCTT 138
PDV T
Sbjct: 390 KPDVTIDT 397
>sp|Q99U67|CTPAL_STAAM Probable CtpA-like serine protease OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=SAV1420 PE=3 SV=1
Length = 496
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVD---GHAITHDPLVVLVNEGSAS 70
GGL+ + +A I++D +T+V +++ T I + A D + +LVNEGSAS
Sbjct: 272 GGLLDEAVKMANIFIDKGKTVV-KLEKGKDTEAIQTSNDSLKEAKDMD-ISILVNEGSAS 329
Query: 71 ASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGI 130
ASE+ GAL D +A + G KTFGKG +Q+ E DGS L T K+L+P H I GI
Sbjct: 330 ASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGI 389
Query: 131 TPDVQCTT 138
PDV T
Sbjct: 390 KPDVTIDT 397
>sp|Q5HPB7|CTPAL_STAEQ Probable CtpA-like serine protease OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=SERP0996 PE=3 SV=1
Length = 491
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVN-AVDREGHTLPINMVDGHAITHDPLVVLVNEGSASAS 72
GGL+ + +A I++D T+V ++ L + + +LVNEGSASAS
Sbjct: 267 GGLLDEAVKMANIFIDKGNTVVQLEKGKDKEELKTSNQALKQAKDMKVSILVNEGSASAS 326
Query: 73 EILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGITP 132
E+ GA+ D +A + G KTFGKG +Q++ E DGS + T K+L+P H I GI P
Sbjct: 327 EVFTGAMKDYHKAKVYGSKTFGKGIVQTIREFSDGSLIKYTEMKWLTPDGHYIHGKGIRP 386
Query: 133 DVQCTTDMLSS 143
DV +T S
Sbjct: 387 DVSISTPKYQS 397
>sp|Q8CSK8|CTPAL_STAES Probable CtpA-like serine protease OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=SE_1113 PE=3 SV=1
Length = 491
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVN-AVDREGHTLPINMVDGHAITHDPLVVLVNEGSASAS 72
GGL+ + +A I++D T+V ++ L + + +LVNEGSASAS
Sbjct: 267 GGLLDEAVKMANIFIDKGNTVVQLEKGKDKEELKTSNQALKQAKDMKVSILVNEGSASAS 326
Query: 73 EILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGITP 132
E+ GA+ D +A + G KTFGKG +Q+ E DGS + T K+L+P H I GI P
Sbjct: 327 EVFTGAMKDYHKAKVYGSKTFGKGIVQTTREFSDGSLIKYTEMKWLTPDGHYIHGKGIRP 386
Query: 133 DVQCTTDMLSS 143
DV +T S
Sbjct: 387 DVSISTPKYQS 397
>sp|O35002|CTPB_BACSU Carboxy-terminal processing protease CtpB OS=Bacillus subtilis
(strain 168) GN=ctpB PE=1 SV=1
Length = 480
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASE 73
GG +++ ++ + ++ D+ + +R G H + P+ V+ ++GSASASE
Sbjct: 254 GGYLQSVEEILKHFVTKDQPYIQIAERNGDKKRYFSTLTHKKAY-PVNVITDKGSASASE 312
Query: 74 ILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGITPD 133
ILAGAL + G +VG +FGKG +Q + DGS + +T+ K+L+P + I GI P
Sbjct: 313 ILAGALKEAGHYDVVGDTSFGKGTVQQAVPMGDGSNIKLTLYKWLTPNGNWIHKKGIEPT 372
Query: 134 V 134
+
Sbjct: 373 I 373
>sp|O34666|CTPA_BACSU Carboxy-terminal processing protease CtpA OS=Bacillus subtilis
(strain 168) GN=ctpA PE=2 SV=1
Length = 466
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 14 GGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASE 73
GGL++ + ++ +++D + ++ + G + +T P VVLVN+G+ASA+E
Sbjct: 242 GGLMEQAITMSNLFIDKGKNIMQVEYKNGSKEVMKAEKERKVTK-PTVVLVNDGTASAAE 300
Query: 74 ILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGITPD 133
I+A ALH++ L+G TFGKG +Q+ E DGS + +TVAK+L+ I GI P
Sbjct: 301 IMAAALHESSNVPLIGETTFGKGTVQTAKEYDDGSTVKLTVAKWLTADGEWIHKKGIKPQ 360
Query: 134 VQC 136
V+
Sbjct: 361 VKA 363
>sp|P23865|PRC_ECOLI Tail-specific protease OS=Escherichia coli (strain K12) GN=prc PE=1
SV=2
Length = 682
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 14/114 (12%)
Query: 34 LVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTF 93
+V D G + DG PLVVLV+ SASASEI A A+ D GRA++VG TF
Sbjct: 416 IVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFSASASEIFAAAMQDYGRALVVGEPTF 475
Query: 94 GKGKIQ---SVTELHD----------GSALFVTVAKYLSPALHDIDHVGITPDV 134
GKG +Q S+ ++D GS + T+ K+ G+TPD+
Sbjct: 476 GKGTVQQYRSLNRIYDQMLRPEWPALGSVQY-TIQKFYRVNGGSTQRKGVTPDI 528
>sp|P43669|PRC_SALTY Tail-specific protease OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=prc PE=3 SV=2
Length = 682
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 14/114 (12%)
Query: 34 LVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTF 93
+V D G + DG PLVVLV+ SASASEI A A+ D GRA++VG TF
Sbjct: 416 IVQVRDNNGKVREDSDTDGVVYYKGPLVVLVDRFSASASEIFAAAMQDYGRALIVGEPTF 475
Query: 94 GKGKIQ---SVTELHD----------GSALFVTVAKYLSPALHDIDHVGITPDV 134
GKG +Q S+ ++D GS + T+ K+ G+TPD+
Sbjct: 476 GKGTVQQYRSLNRIYDQMLRPEWPALGSVQY-TIQKFYRVNGGSTQRKGVTPDI 528
>sp|P45306|PRC_HAEIN Tail-specific protease OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=prc PE=3 SV=1
Length = 695
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 60 LVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELH 105
L V++N SASASEI A A+ D R I++G TFGKG +Q L+
Sbjct: 449 LFVMINRYSASASEIFAAAMQDYRRGIIIGQNTFGKGTVQQSRSLN 494
>sp|Q9PL60|Y248_CHLMU Uncharacterized protein TC_0248 OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=TC_0248 PE=3 SV=1
Length = 601
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 59 PLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKG 96
P+ VL+NE S ++ L DN RA++VG +T G G
Sbjct: 480 PICVLINEQDFSCADFFPAILKDNDRALVVGTRTAGAG 517
>sp|O84866|Y858_CHLTR Protein CT_858 OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=CT_858 PE=1 SV=2
Length = 601
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 59 PLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKG 96
P+ VL+NE S ++ L DN RA++VG +T G G
Sbjct: 480 PICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAGAG 517
>sp|Q9Z6P3|Y1016_CHLPN Protein CPn_1016/CP_0837/CPj1016/CpB1054 OS=Chlamydia pneumoniae
GN=CPn_1016 PE=3 SV=2
Length = 619
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 59 PLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKG 96
PL +L++E S ++ L DNGRA L+G T G G
Sbjct: 481 PLFMLIDEDDFSCGDLAPAILKDNGRATLIGKPTAGAG 518
>sp|Q8IWI9|MGAP_HUMAN MAX gene-associated protein OS=Homo sapiens GN=MGA PE=1 SV=2
Length = 3026
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 31 DETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNG 83
DET N++ RE T + +G A+ + V+ N G+A++ E L +L D G
Sbjct: 1940 DET--NSIKREQETKKVLQSEGEAVDPEANVIKQNSGAATSEETLNDSLEDRG 1990
>sp|P12661|RET3_BOVIN Retinol-binding protein 3 OS=Bos taurus GN=RBP3 PE=1 SV=1
Length = 1286
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 56 THDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVA 115
+H L VLV+ S SA+E A + D RA ++G T G + ++ SAL+ ++
Sbjct: 834 SHKDLYVLVSHTSGSAAEAFAHTMQDLQRATIIGEPTAGGALSVGIYQV-GSSALYASMP 892
Query: 116 KYLSPAL---HDIDHVGITPDVQCTTDMLSSPKESLLKNKSSVSSLEADSCIMVAEH 169
++ + D G+ PD+ + S ++ ++ V ++ + +VA++
Sbjct: 893 TQMAMSASTGEAWDLAGVEPDITVPMSVALSTARDIVTLRAKVPTVLQTAGKLVADN 949
>sp|Q9LQ10|1A110_ARATH Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10
PE=2 SV=1
Length = 557
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 53 HAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 88
+++T DP +++ G++SA EIL+ L D+G A LV
Sbjct: 229 NSVTFDPSQLVLTSGASSAIEILSFCLADSGNAFLV 264
>sp|A4J9Z5|MNMC_BURVG tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=mnmC PE=3 SV=1
Length = 653
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 14 GGLVKAGLDVAQIWLDGDE------TLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEG 67
G + AGL AQ+ G+ T V ++R+G T DG I P+VVL N G
Sbjct: 398 GAVWPAGLCAAQVAAAGERVTLRTGTEVARLERDGDTWRAIGADGATIAEAPVVVLANAG 457
Query: 68 SASASEILAGALH 80
A LAG H
Sbjct: 458 DAVR---LAGLRH 467
>sp|A8NAN2|ARGJ_COPC7 Arginine biosynthesis bifunctional protein ArgJ, mitochondrial
OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC
MYA-4618 / FGSC 9003) GN=CC1G_08401 PE=3 SV=1
Length = 471
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 34 LVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTF 93
L AVDR +++ VDG T+D + VL N G+AS+S I A A TF
Sbjct: 259 LTYAVDRSFNSI---SVDGDMSTNDSIYVLAN-GAASSSIIDEDATPQAYEAFKQELTTF 314
Query: 94 GKGKIQSVTELHDGSALFVTVAKYLSPALHD 124
+ V +G+ FVTV +P+ D
Sbjct: 315 AADLAKLVVRDGEGATKFVTVTVKGAPSYKD 345
>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus (strain A59) GN=1a
PE=1 SV=1
Length = 4468
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 107 GSALF---VTVAKYLSPALHDIDHVGITPDVQCTTDMLSSPKESLLKNKSSVSSLEADSC 163
G LF TV +Y LH I H T VQC T + P ++ + +SSL C
Sbjct: 2936 GHTLFNVPTTVLRYGFHVLHFITHAFATDSVQCYTPHMQIPYDNFYASGCVLSSL----C 2991
Query: 164 IMVA 167
M+A
Sbjct: 2992 TMLA 2995
>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) GN=rep
PE=1 SV=1
Length = 7176
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 107 GSALF---VTVAKYLSPALHDIDHVGITPDVQCTTDMLSSPKESLLKNKSSVSSLEADSC 163
G LF TV +Y LH I H T VQC T + P ++ + +SSL C
Sbjct: 2936 GHTLFNVPTTVLRYGFHVLHFITHAFATDSVQCYTPHMQIPYDNFYASGCVLSSL----C 2991
Query: 164 IMVA 167
M+A
Sbjct: 2992 TMLA 2995
>sp|C0MHD5|AROE_STRS7 Shikimate dehydrogenase OS=Streptococcus equi subsp. zooepidemicus
(strain H70) GN=aroE PE=3 SV=1
Length = 294
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 18 KAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAG 77
K GLD A + + D + + A + L I + +V L++E S +A+ LAG
Sbjct: 34 KLGLDYAYLAFEVDNSGLAAAVQGMRALGICGANVSMPNKQAIVPLLDELSPAAA--LAG 91
Query: 78 ALHD----NGRAILVGHKTFGKGKIQSVTE 103
A++ +G+ LVGH T G G I+S+ E
Sbjct: 92 AVNTVVNTDGKGHLVGHITDGTGAIRSLAE 121
>sp|B4U4B1|AROE_STREM Shikimate dehydrogenase OS=Streptococcus equi subsp. zooepidemicus
(strain MGCS10565) GN=aroE PE=3 SV=1
Length = 294
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 18 KAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAG 77
K GLD A + + D + + A + L I + +V L++E S +A+ LAG
Sbjct: 34 KLGLDYAYLAFEVDNSGLAAAVQGMRALGICGANVSMPNKQAIVPLLDELSPAAA--LAG 91
Query: 78 ALHD----NGRAILVGHKTFGKGKIQSVTE 103
A++ +G+ LVGH T G G I+S+ E
Sbjct: 92 AVNTVVNTDGKGHLVGHITDGTGAIRSLAE 121
>sp|A8AW04|TRPF_STRGC N-(5'-phosphoribosyl)anthranilate isomerase OS=Streptococcus
gordonii (strain Challis / ATCC 35105 / CH1 / DL1 /
V288) GN=trpF PE=3 SV=1
Length = 195
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 4 FSPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDR 40
F PSL+ Q + A LD+ QI D DE L+ +DR
Sbjct: 59 FVSPSLAELQEAISVANLDLVQIHGDFDEELLTQIDR 95
>sp|O62763|ACES_FELCA Acetylcholinesterase OS=Felis catus GN=ACHE PE=3 SV=1
Length = 611
Score = 30.0 bits (66), Expect = 8.1, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 38 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 88
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 310 VDHEWHVLPQESVFRFSFVPVVDGDFLSDTP-EALINAGDFHGLQVLVGVVKDEGSYFLV 368
Query: 89 -GHKTFGK 95
G F K
Sbjct: 369 YGAPGFSK 376
>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens
GN=SH3RF3 PE=1 SV=2
Length = 882
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 84 RAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGITPDVQCTTDMLSS 143
R +VG KG T +H GS ++A PAL TP S
Sbjct: 535 RNNVVGGSPLAKGI---TTTMHPGSGSLSSLATATRPALPIT-----TPQAHAQHPTASP 586
Query: 144 PKESLLKNKSSVSSLEADSCIMVAEHELDVQESRGTAS 181
P S L++ + ++ +A S I A H + R TA+
Sbjct: 587 PTGSCLRHSAQPTASQARSTISTAAHSAAQAQDRPTAT 624
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,844,161
Number of Sequences: 539616
Number of extensions: 2642137
Number of successful extensions: 8032
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7994
Number of HSP's gapped (non-prelim): 48
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)