Query 030210
Match_columns 181
No_of_seqs 174 out of 1077
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 16:28:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j7x_A IRBP, interphotorecepto 100.0 4E-35 1.4E-39 244.5 17.2 152 3-176 141-300 (302)
2 3k50_A Putative S41 protease; 100.0 7.6E-35 2.6E-39 251.4 19.1 167 2-176 224-402 (403)
3 1fc6_A Photosystem II D1 prote 100.0 3E-34 1E-38 246.4 18.4 137 3-140 230-366 (388)
4 3dor_A Protein CT_858, CPAF; m 100.0 1.1E-30 3.7E-35 231.6 14.6 160 3-175 332-562 (583)
5 1k32_A Tricorn protease; prote 100.0 7.8E-31 2.7E-35 246.6 12.9 153 3-177 880-1035(1045)
6 1y7o_A ATP-dependent CLP prote 45.3 12 0.00041 28.7 2.5 26 55-80 101-126 (218)
7 1hnr_A H-NS; histone-like prot 21.8 42 0.0014 19.5 1.5 20 117-136 9-30 (47)
8 2lti_A Astexin1; sidechain-TO- 20.3 27 0.00093 17.2 0.4 10 128-137 4-13 (26)
9 2l92_A Histone family protein 20.1 42 0.0014 19.8 1.2 21 115-135 5-26 (50)
10 2lev_A LER; transcription regu 15.4 63 0.0022 19.5 1.3 22 115-136 15-37 (57)
No 1
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=100.00 E-value=4e-35 Score=244.47 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=129.2
Q ss_pred eEEEeecCCCCCCCHHHHHHHHhhccCCCc--eeEEEEcCCCce-eEEEccC---CC-ccCCCcEEEEEcCCCccHHHHH
Q 030210 3 FFSPPSLSIFQGGLVKAGLDVAQIWLDGDE--TLVNAVDREGHT-LPINMVD---GH-AITHDPLVVLVNEGSASASEIL 75 (181)
Q Consensus 3 ~~lIiDLR~N~GG~~~~a~~l~~~f~~~~~--~~~~~~~r~g~~-~~~~~~~---~~-~~~~~pv~VL~~~~TaSaaE~f 75 (181)
..||||||+|+||++..+..++++|++++. .++++++|+++. ..++..+ +. ..+++|++||||++||||||+|
T Consensus 141 ~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~pvvVLvn~~TaSAsE~~ 220 (302)
T 1j7x_A 141 ENLIIDLRYNVGGSSTAVPLLLSYFLDPETKIHLFTLHNRQQNSTDEVYSHPKVLGKPYGSKKGVYVLTSHQTATAAEEF 220 (302)
T ss_dssp SEEEEECTTCCCBCSTTHHHHHHTTSCSSCCCEEEEEEETTTTCCEEEECCSCCSSCCCCSSSEEEEEECTTCCTHHHHH
T ss_pred CeEEEEeCCCCCCChhHHHHHHHHhcCCCcceeeEEEEccCCCCceeecccccccCCccCCCCCEEEEeCCCcCcHHHHH
Confidence 479999999999999999999999998764 357777787763 3444322 11 2368999999999999999999
Q ss_pred HHHHhcCCCeEEEcccCCCCceeceEEEccCC-ceEEEEEEEEECCCCCcccCCCcccceEecCCCCCCchhhhhccccC
Q 030210 76 AGALHDNGRAILVGHKTFGKGKIQSVTELHDG-SALFVTVAKYLSPALHDIDHVGITPDVQCTTDMLSSPKESLLKNKSS 154 (181)
Q Consensus 76 a~~l~~~~~~~vIG~~T~G~~~~~~~~~L~~g-~~l~i~~~~~~~~~g~~~e~~Gv~PDi~v~~~~~~~~~~~~~~~~~~ 154 (181)
+++||+++++++||++|+|++..+..++|++| +.+.++++++++|+|+.+++.||.|||+|+.
T Consensus 221 a~alq~~~~a~vVG~~T~Gk~~~~~~~~L~~g~~~lt~p~~~~~~p~G~~~~~~Gi~PDi~v~~---------------- 284 (302)
T 1j7x_A 221 AYLMQSLSRATIIGEITSGNLMHSKVFPFGDTQLSVTVPIINFIDSNGDYWLGGGVVPDAIVLA---------------- 284 (302)
T ss_dssp HHHHHHTTCCEEEESCCCCCCSCEEEEECTTSSEEEEEECEEEEETTSCBCCCSCCCCSEECCG----------------
T ss_pred HHHHHhCCCEEEEcccCCCCCCCceEEEeCCCcEEEEEEEEEEECCCCCccCCcCcCCCeeeCH----------------
Confidence 99999999999999999999999999999997 5556666899999999999999999999852
Q ss_pred CCCCCCCHHHHHHHHHHhhhcc
Q 030210 155 VSSLEADSCIMVAEHELDVQES 176 (181)
Q Consensus 155 ~~~~~~D~~l~~Ai~~L~~~~~ 176 (181)
|++|++|+++|+.+++
T Consensus 285 ------d~~L~~A~~~l~~~~~ 300 (302)
T 1j7x_A 285 ------DEALDKAKEIIAFHPP 300 (302)
T ss_dssp ------GGHHHHHHHHHHTCCC
T ss_pred ------HHHHHHHHHHHHhhhc
Confidence 7899999999987653
No 2
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=100.00 E-value=7.6e-35 Score=251.37 Aligned_cols=167 Identities=16% Similarity=0.134 Sum_probs=135.6
Q ss_pred ceEEEeecCCCCCCCHHHHHHHHhhccCCCce---eEEEE--cCCCceeE-EEcc-----CCCccCCCcEEEEEcCCCcc
Q 030210 2 VFFSPPSLSIFQGGLVKAGLDVAQIWLDGDET---LVNAV--DREGHTLP-INMV-----DGHAITHDPLVVLVNEGSAS 70 (181)
Q Consensus 2 ~~~lIiDLR~N~GG~~~~a~~l~~~f~~~~~~---~~~~~--~r~g~~~~-~~~~-----~~~~~~~~pv~VL~~~~TaS 70 (181)
+..||||||+|+||.+..|..++++|++++.. +++++ +|.+.... +... .+...+.+|++||||+.|||
T Consensus 224 ~~~lIlDLR~N~GG~l~~a~~la~~f~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vL~~~~taS 303 (403)
T 3k50_A 224 VNEFVLDLRYNTGGSLDCAQLLCTMLAPADKMNQLLALLRYSDKRVEANQDLTFNPELIQSGANLNLSTVYVLTTNATRG 303 (403)
T ss_dssp CCEEEEECTTCCCBCHHHHHHHHHHHSCGGGTTSEEEEEECCTTCGGGCEEEECCGGGTTTSCCCCCSEEEEEECTTCCT
T ss_pred CcEEEEEcCCCCCCCHHHHHHHHHHhcCCCccceeEEEEEEcCCCCcceeEEeccccccccccccCCCCEEEEECCCCcc
Confidence 35799999999999999999999999998643 66776 45554322 2221 12234568999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEcccCCCCceeceEEE-ccCCceEEEEEEEEECCCCCcccCCCcccceEecCCCCCCchhhhh
Q 030210 71 ASEILAGALHDNGRAILVGHKTFGKGKIQSVTE-LHDGSALFVTVAKYLSPALHDIDHVGITPDVQCTTDMLSSPKESLL 149 (181)
Q Consensus 71 aaE~fa~~l~~~~~~~vIG~~T~G~~~~~~~~~-L~~g~~l~i~~~~~~~~~g~~~e~~Gv~PDi~v~~~~~~~~~~~~~ 149 (181)
|||+|+++||+++++++||++|+|+++.+..+. +++|+.++++++++++|+|..+++.||.|||+|+.++....
T Consensus 304 a~E~~~~~l~~~~~~~~iG~~T~G~~~~~~~~~~~~~g~~l~~t~~~~~~~~G~~~~~~Gi~PDi~v~~~~~~~~----- 378 (403)
T 3k50_A 304 AAEMVINCLNPYMKVVLIGTKTAGEYVATKPFVHPTDRFILNLVVCNVYNAEEKSDYATGFKPTYEYNEDSYLST----- 378 (403)
T ss_dssp HHHHHHHHHTTTSEEEEEESCCCCCCEEEEEEECSSSCEEEEEEEEEEECTTSCCCCTTCCCCSEECCGGGCGGG-----
T ss_pred HHHHHHHHHhhCCCEEEEeecCCCCCeeeeEEEeCCCCcEEEEEEEEEECCCCCCccCCCcCceEEeCCCccccc-----
Confidence 999999999999999999999999998888886 78899999999999999999999999999999997642000
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhcc
Q 030210 150 KNKSSVSSLEADSCIMVAEHELDVQES 176 (181)
Q Consensus 150 ~~~~~~~~~~~D~~l~~Ai~~L~~~~~ 176 (181)
...+. .++|+||++||++|..+++
T Consensus 379 --~~~~~-~~~D~~L~~Al~~l~~~~~ 402 (403)
T 3k50_A 379 --YLPFG-NTNETLLNAALKIMSGITD 402 (403)
T ss_dssp --CCCTT-CTTSHHHHHHHHHHHTSCC
T ss_pred --ccccC-CCccHHHHHHHHHHHhccc
Confidence 01112 2799999999999988764
No 3
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=100.00 E-value=3e-34 Score=246.40 Aligned_cols=137 Identities=43% Similarity=0.620 Sum_probs=123.9
Q ss_pred eEEEeecCCCCCCCHHHHHHHHhhccCCCceeEEEEcCCCceeEEEccCCCccCCCcEEEEEcCCCccHHHHHHHHHhcC
Q 030210 3 FFSPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDN 82 (181)
Q Consensus 3 ~~lIiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~pv~VL~~~~TaSaaE~fa~~l~~~ 82 (181)
..||||||+|+||.+..+..++++|++++ .+++++.|+|....|........+.+|++||||++||||||+||.+||++
T Consensus 230 ~~lIlDLR~N~GG~~~~~~~~~~~f~~~~-~i~~~~~r~~~~~~~~~~~~~~~~~~pv~VLvn~~taSasEi~a~al~~~ 308 (388)
T 1fc6_A 230 AGLVLDIRNNGGGLFPAGVNVARMLVDRG-DLVLIADSQGIRDIYSADGNSIDSATPLVVLVNRGTASASEVLAGALKDS 308 (388)
T ss_dssp SEEEEECTTCCCBCHHHHHHHHHHHCSSS-EEEEEEETTEEEEEEECCSCCSCSSSCEEEEECTTCCTHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHcCCC-cEEEEecCCCceeEEecCCccccCCCCEEEEeCCCCccHHHHHHHHHhhC
Confidence 57999999999999999999999999986 57778888887666654322224899999999999999999999999999
Q ss_pred CCeEEEcccCCCCceeceEEEccCCceEEEEEEEEECCCCCcccCCCcccceEecCCC
Q 030210 83 GRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDHVGITPDVQCTTDM 140 (181)
Q Consensus 83 ~~~~vIG~~T~G~~~~~~~~~L~~g~~l~i~~~~~~~~~g~~~e~~Gv~PDi~v~~~~ 140 (181)
+++++||++|+|+++.+..++|++|+.++++++++++|+|+.+++.||.|||+|+.+.
T Consensus 309 ~~~~~vG~~T~Gkg~~~~~~~L~~g~~l~~t~~~~~~p~G~~~~~~Gi~PDi~v~~~~ 366 (388)
T 1fc6_A 309 KRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPEV 366 (388)
T ss_dssp TSEEEEESCCCCCCEEEEEEECTTSCEEEEEEEEEECTTSCBCTTTCCCCSEECCTTS
T ss_pred CCEEEEeecCCCCCeeeeEEEcCCCCEEEEEEEEEEcCCCCCccCCCcCCCEEeCCcc
Confidence 9999999999999999999999999999999999999999999999999999999874
No 4
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=99.97 E-value=1.1e-30 Score=231.59 Aligned_cols=160 Identities=19% Similarity=0.160 Sum_probs=130.6
Q ss_pred eEEEeecCCCCCCCHHHHHHHHhhccCCCceeEEE----E----------------------------------------
Q 030210 3 FFSPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNA----V---------------------------------------- 38 (181)
Q Consensus 3 ~~lIiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~----~---------------------------------------- 38 (181)
..||||+|+|+||+......++++|.+++-.+-.. .
T Consensus 332 ~~liid~~~n~gg~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 411 (583)
T 3dor_A 332 EALIIDQTNNPGGSVLYLYALLSMLTDRPLELPKHRMILTQDEVVDALDWLTLLENVDTNVESRLALGDNMEGYTVDLQV 411 (583)
T ss_dssp SEEEEECCSBCCBCHHHHHHHHHTTCSSCEECCEEEECCCHHHHHHHHHHHHHHTTCCSHHHHHHHHCSEETTEECCHHH
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHhcCCCCCcceeeEEecHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCccHHH
Confidence 47999999999999999999999999974211111 0
Q ss_pred --------------cCCCcee---E-------EEccCCCccCCCcEEEEEcCCCccHHHHHHHHHhcCCCeEEEcccCCC
Q 030210 39 --------------DREGHTL---P-------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFG 94 (181)
Q Consensus 39 --------------~r~g~~~---~-------~~~~~~~~~~~~pv~VL~~~~TaSaaE~fa~~l~~~~~~~vIG~~T~G 94 (181)
..+|... + ...+.+...|++|++||||+.||||||+||.+||+++++++||++|+|
T Consensus 412 ~~~l~~~~~~~l~~~~~G~~t~s~p~pl~g~~~i~p~~~~~~~gPvvVLVN~~SASASEifA~aLKd~~ra~lVGe~T~G 491 (583)
T 3dor_A 412 AEYLKSFGRQVLNCWSKGDIELSTPIPLFGFEKIHPHPRVQYSKPICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAG 491 (583)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCSCBCGGGCCEECCCSSCCCCSCEEEEECTTBCTHHHHHHHHHHHTTCEEEEESCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCceecCCcccccceeeccCCCccCCCCEEEEECCCCccHHHHHHHHHHhCCCEEEEeeCCCC
Confidence 0011100 0 011334467999999999999999999999999999999999999999
Q ss_pred CceeceEEEccCCceE---EEEEEEEECCCCCcccCCCcccceEecCCCCCCchhhhhccccCCCCCCCCHHHHHHHHHH
Q 030210 95 KGKIQSVTELHDGSAL---FVTVAKYLSPALHDIDHVGITPDVQCTTDMLSSPKESLLKNKSSVSSLEADSCIMVAEHEL 171 (181)
Q Consensus 95 ~~~~~~~~~L~~g~~l---~i~~~~~~~~~g~~~e~~Gv~PDi~v~~~~~~~~~~~~~~~~~~~~~~~~D~~l~~Ai~~L 171 (181)
+++.+..+.|++|+.+ +++++++++|+|+.+++.||.|||+|+.++... .. ++|+|+++|++.|
T Consensus 492 kg~vq~~~~Lpdg~~l~~lklT~a~~~tp~G~~ie~~GV~PDI~V~~t~~dl------------~~-GrD~ql~~AV~~l 558 (583)
T 3dor_A 492 AGGFVFNVQFPNRTGIKTCSLTGSLAVREHGAFIENIGVEPHIDLPFTANDI------------RY-KGYSEYLDKVKKL 558 (583)
T ss_dssp CCSCEEEECCCCSSCEEEEEEECEEEECTTSCBCTTTCCCCSEECCCCHHHH------------HT-TCCHHHHHHHHHH
T ss_pred CCceeeEEEcCCCCeEEEEEeeeEEEECCCCCCcCCCCcCCcEEeCCCHHHH------------Hc-CCCHHHHHHHHHH
Confidence 9999999999999855 599999999999999999999999999876431 12 8999999999999
Q ss_pred hhhc
Q 030210 172 DVQE 175 (181)
Q Consensus 172 ~~~~ 175 (181)
.+++
T Consensus 559 Lk~L 562 (583)
T 3dor_A 559 VCQL 562 (583)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9887
No 5
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=7.8e-31 Score=246.58 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=129.8
Q ss_pred eEEEeecCCCCCCCHHHHHHHHhhccCCCceeEEEEcCCCceeEEEccCCCccCCCcEEEEEcCCCccHHHHHHHHHhcC
Q 030210 3 FFSPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDN 82 (181)
Q Consensus 3 ~~lIiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~pv~VL~~~~TaSaaE~fa~~l~~~ 82 (181)
..||||||+|+||.+..+ ++++|.. .++++++.|+|+...+.. ..+.+|++||||++||||||+||.+||++
T Consensus 880 ~~liiDlR~N~GG~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~vL~~~~taSa~e~~~~~l~~~ 951 (1045)
T 1k32_A 880 QGLIVDVRFNGGGFVSQL--IIEKLMN--KRIGYDNPRRGTLSPYPT----NSVRGKIIAITNEYAGSDGDIFSFSFKKL 951 (1045)
T ss_dssp SEEEEECTTCCCBSCHHH--HHHHHTC--BCCEEEEESSSCCEEEST----TCBCSEEEEEECTTCCTHHHHHHHHHHHT
T ss_pred CEEEEEcCcCCCCCHHHH--HHhhccC--CcEEEEecCCCceeeccc----cCCCCCEEEEECCCCccHHHHHHHHHhhc
Confidence 579999999999999875 4777743 367888888887665531 24789999999999999999999999999
Q ss_pred CCeEEEcccCCCCceec--eEEEccCCceEEEE-EEEEECCCCCcccCCCcccceEecCCCCCCchhhhhccccCCCCCC
Q 030210 83 GRAILVGHKTFGKGKIQ--SVTELHDGSALFVT-VAKYLSPALHDIDHVGITPDVQCTTDMLSSPKESLLKNKSSVSSLE 159 (181)
Q Consensus 83 ~~~~vIG~~T~G~~~~~--~~~~L~~g~~l~i~-~~~~~~~~g~~~e~~Gv~PDi~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (181)
+++++||++|+| +..+ ..++|++|+.++++ ++++++|+|..+++.||.|||+|+.++.. + .. +
T Consensus 952 ~~~~~vG~~t~G-g~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~Gi~Pdi~v~~~~~~------~------~~-~ 1017 (1045)
T 1k32_A 952 GLGKLIGTRTWG-GVVGITPKRRLIDGTVLTQPEFAFWFRDAGFGVENYGVDPDVEIEYAPHD------Y------LS-G 1017 (1045)
T ss_dssp TSEEEEESCCCC-CCEECCCCCBCTTSCEECCCCEEEEETTTBTTTTTTCCCCSEECCCCHHH------H------HT-T
T ss_pred CCEEEEccCCCC-CccccCceEEcCCCCeEEEeeEEEEECCCCCccCCCCccCCEEeCCChHH------h------cc-C
Confidence 999999999999 5554 56899999999998 89999999999999999999999976532 1 12 7
Q ss_pred CCHHHHHHHHHHhhhccc
Q 030210 160 ADSCIMVAEHELDVQESR 177 (181)
Q Consensus 160 ~D~~l~~Ai~~L~~~~~~ 177 (181)
+|++|++|+++|.+++++
T Consensus 1018 ~d~~l~~a~~~l~~~~~~ 1035 (1045)
T 1k32_A 1018 KDPQIDYAIDALIEELRN 1035 (1045)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHh
Confidence 999999999999988743
No 6
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=45.32 E-value=12 Score=28.74 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=21.2
Q ss_pred cCCCcEEEEEcCCCccHHHHHHHHHh
Q 030210 55 ITHDPLVVLVNEGSASASEILAGALH 80 (181)
Q Consensus 55 ~~~~pv~VL~~~~TaSaaE~fa~~l~ 80 (181)
...+|+++.+++..+|++=+++.+-.
T Consensus 101 ~~~~pV~t~v~G~AaS~G~~Ia~a~d 126 (218)
T 1y7o_A 101 FIKADVQTIVMGMAASMGTVIASSGA 126 (218)
T ss_dssp HSSSCEEEEEEEEEETHHHHHHTTSC
T ss_pred hcCCCEEEEEccEeHHHHHHHHHcCC
Confidence 35689999999999999988877644
No 7
>1hnr_A H-NS; histone-like protein H1, DNA-binding protein; NMR {Escherichia coli} SCOP: a.155.1.1 PDB: 1hns_A
Probab=21.80 E-value=42 Score=19.45 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.3
Q ss_pred EECCCCC--cccCCCcccceEe
Q 030210 117 YLSPALH--DIDHVGITPDVQC 136 (181)
Q Consensus 117 ~~~~~g~--~~e~~Gv~PDi~v 136 (181)
|.+|+|. .|.|+|-+|.-..
T Consensus 9 y~dp~G~~~TWtGrGr~P~wi~ 30 (47)
T 1hnr_A 9 YVDENGETKTWTGQGRTPAVIK 30 (47)
T ss_dssp ECCSSCCCEECCTTSSCCSHHH
T ss_pred ecCCCCCcccccCCCCCCHHHH
Confidence 3489998 8999999998653
No 8
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=20.27 E-value=27 Score=17.16 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=7.4
Q ss_pred CCcccceEec
Q 030210 128 VGITPDVQCT 137 (181)
Q Consensus 128 ~Gv~PDi~v~ 137 (181)
.||.|||--.
T Consensus 4 qgvepdigqt 13 (26)
T 2lti_A 4 QGVEPDIGQT 13 (26)
T ss_dssp SSSSCCBBTT
T ss_pred cccCCCcchh
Confidence 5899998543
No 9
>2l92_A Histone family protein nucleoid-structuring prote; H-NS, at HOOK, DNA binding protein; NMR {Burkholderia vietnamiensis}
Probab=20.10 E-value=42 Score=19.80 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=16.6
Q ss_pred EEEECCC-CCcccCCCcccceE
Q 030210 115 AKYLSPA-LHDIDHVGITPDVQ 135 (181)
Q Consensus 115 ~~~~~~~-g~~~e~~Gv~PDi~ 135 (181)
.+|.+|. |+.|.|+|-+|.-.
T Consensus 5 aKYR~p~~G~TWsGRGR~P~Wi 26 (50)
T 2l92_A 5 PKYRDPATGKTWSGRGRQPAWL 26 (50)
T ss_dssp CCEECTTTCCEECSCSSCCSTT
T ss_pred CeeccCCCCCeecCCCCCCccc
Confidence 3566654 89999999999865
No 10
>2lev_A LER; transcription regulator-DNA complex, arginine-minor-groove recognition; HET: DNA; NMR {Escherichia coli}
Probab=15.39 E-value=63 Score=19.54 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=16.9
Q ss_pred EEEECC-CCCcccCCCcccceEe
Q 030210 115 AKYLSP-ALHDIDHVGITPDVQC 136 (181)
Q Consensus 115 ~~~~~~-~g~~~e~~Gv~PDi~v 136 (181)
.+|.+| +|+.|.|+|-+|+-..
T Consensus 15 aKYr~p~~g~TWtGrGR~P~Wi~ 37 (57)
T 2lev_A 15 GVYYRNEEGQTWSGVGRQPRWLK 37 (57)
T ss_dssp CEEEECTTCCEECSSSCCCHHHH
T ss_pred CeeecCCCCCeeCCCCCCCHHHH
Confidence 356666 4889999999998654
Done!