BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030212
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1
SV=1
Length = 516
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 48 RRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAI 107
RRQK + + ++D ++ + LG VK E PRI+ + +S EE + ++ +
Sbjct: 285 RRQKRLFCR------YYDGNRNPRYI-LGPVKQEDEWDKPRIVRFLDIISDEEIETVKEL 337
Query: 108 ARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGE 167
A+P L +TV D +TGK ++ R S +LS E P++ I RI + + V E
Sbjct: 338 AKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYES--PVVSRINTRIQDLTGLDVSTAE 395
Query: 168 LIQV 171
+QV
Sbjct: 396 ELQV 399
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2
SV=1
Length = 537
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 86 SPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY 145
SP I+ ++ +S EE + ++ IA+P L +TV D KTG ++ R S +L EE
Sbjct: 337 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWL--EEDDD 394
Query: 146 PMIQAIEKRISVFSQVPVENGELIQV 171
P++ + +R+ + + V+ EL+QV
Sbjct: 395 PVVARVNRRMQHITGLTVKTAELLQV 420
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1
SV=1
Length = 535
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 86 SPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY 145
SP I+ ++ +S EE + ++ IA+P L +TV D KTG ++ R S +L EE
Sbjct: 335 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWL--EEDDD 392
Query: 146 PMIQAIEKRISVFSQVPVENGELIQV 171
P++ + +R+ + + V+ EL+QV
Sbjct: 393 PVVARVNRRMQHITGLTVKTAELLQV 418
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1
PE=2 SV=2
Length = 534
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
PRI+ H+ +S E + ++ +A+P L +TV D +TGK + R S +LS E P
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYED--P 392
Query: 147 MIQAIEKRISVFSQVPVENGELIQV 171
++ I RI + + V E +QV
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQV 417
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2
SV=1
Length = 534
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 48 RRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAI 107
RRQK + + + D ++ LL + K E SP I+ ++ +S EE + ++ +
Sbjct: 305 RRQKRLFCR------YHDGNRNPHLL-IAPFKEEDEWDSPHIVRYYDVMSDEEIEKIKQL 357
Query: 108 ARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGE 167
A+P L +TV D KTG ++ R S +L EE P++ + +R+ + + V+ E
Sbjct: 358 AKPKLARATVRDPKTGVLTVASYRVSKSSWL--EEDDDPVVAKVNQRMQQITGLTVKTAE 415
Query: 168 LIQV 171
L+QV
Sbjct: 416 LLQV 419
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans
GN=dpy-18 PE=1 SV=2
Length = 559
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 78 VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMF 137
+K E+ ++P ++ + +S +E ++ +A+P L +TV D+ TGK + + R S +
Sbjct: 319 IKVEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAW 378
Query: 138 LSPEEKKYPMIQAIEKRISVFSQVPVENGELIQV 171
L +E + +++ + KRI + + +E E +Q+
Sbjct: 379 L--KEWEGDVVETVNKRIGYMTNLEMETAEELQI 410
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1
SV=1
Length = 534
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
PRI+ H+ +S E + ++ +A+P L+ +T+ + TG + R S +LS E P
Sbjct: 335 PRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYEN--P 392
Query: 147 MIQAIEKRISVFSQVPVENGELIQV 171
++ I RI + + V E +QV
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQV 417
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2
SV=1
Length = 534
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
PRI+ H+ +S E + ++ +A+P L+ +T+ + TG + R S +LS E P
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYEN--P 392
Query: 147 MIQAIEKRISVFSQVPVENGELIQV 171
++ I RI + + V E +QV
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQV 417
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1
SV=2
Length = 534
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
PRI+ H+ +S E + ++ +A+P L+ +T+ + TG + R S +LS E P
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYEN--P 392
Query: 147 MIQAIEKRISVFSQVPVENGELIQV 171
++ I RI + + V E +QV
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQV 417
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2
SV=2
Length = 534
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
PRI+ H+ +S E + ++ +A+P L+ +T+ + TG + R S +LS E P
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYED--P 392
Query: 147 MIQAIEKRISVFSQVPVENGELIQV 171
++ I RI + + V E +QV
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQV 417
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2
SV=1
Length = 542
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 54 YLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQ 113
+ Q+P ++ + LL L + EV+ P I + H+F+S EE +R +A P LQ
Sbjct: 312 HYQIPSLYCSYETNSSPYLL-LQPARKEVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQ 370
Query: 114 VSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVE--NGELIQV 171
S V + K ++ R S +L ++ PM+ ++ RI+ + + ++ E +QV
Sbjct: 371 RSVVASGE--KQLQVEYRISKSAWL--KDTVDPMLVTLDHRIAALTGLDIQPPYAEYLQV 426
Query: 172 L 172
+
Sbjct: 427 V 427
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3
PE=2 SV=1
Length = 544
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 54 YLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQ 113
+ Q+P ++ + LL L + EVI P + + H+F+S EE +R +A P LQ
Sbjct: 314 HYQIPSLYCSYETNSSPYLL-LQPARKEVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQ 372
Query: 114 VSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVE--NGELIQV 171
S V + K ++ R S +L ++ P++ +++RI+ + + ++ E +QV
Sbjct: 373 RSVVASGE--KQLQVEYRISKSAWL--KDTVDPVLVTLDRRIAALTGLDIQPPYAEYLQV 428
Query: 172 L 172
+
Sbjct: 429 V 429
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L593 PE=1 SV=1
Length = 242
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 90 LVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQ 149
VL+N ++ +C + A L D++ G N+R S M++S K PM++
Sbjct: 61 FVLNNLINPTKCQEIMQFANGKL-----FDSQVLSGTDKNIRNSQQMWIS---KNNPMVK 112
Query: 150 AIEKRISVFSQVPVENGELIQVLR 173
I + I VP +N E +QV+R
Sbjct: 113 PIFENICRQFNVPFDNAEDLQVVR 136
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2
SV=1
Length = 544
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 78 VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMF 137
V+ EVI P +++ H+F+S E +R +A P LQ S V + K + R S +
Sbjct: 337 VRKEVIHLEPYVVLYHDFVSDAEAQTIRGLAEPWLQRSVVASGE--KQLPVEYRISKSAW 394
Query: 138 LSPEEKKYPMIQAIEKRISVFSQVPVE--NGELIQVL 172
L ++ P++ ++ RI+ + + V+ E +QV+
Sbjct: 395 L--KDTVDPVLVTLDHRIAALTGLDVQPPYAEYLQVV 429
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1
SV=1
Length = 544
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 56 QLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVS 115
Q+P ++ + A LL L ++ EVI P I + H+F+S E +R +A P LQ S
Sbjct: 316 QIPSLYCSYETNSNAYLL-LQPIRKEVIHLEPYIALYHDFVSDSEAQKIRELAEPWLQRS 374
Query: 116 TVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVE--NGELIQVL 172
V + K ++ R S +L ++ P + + RI+ + + V E +QV+
Sbjct: 375 VVASGE--KQLQVEYRISKSAWL--KDTVDPKLVTLNHRIAALTGLDVRPPYAEYLQVV 429
>sp|B3PLH7|MLTF_CELJU Membrane-bound lytic murein transglycosylase F OS=Cellvibrio
japonicus (strain Ueda107) GN=mltF PE=3 SV=1
Length = 495
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/80 (18%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 97 SMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSG--MFLSPEEKKYPMIQAIEKR 154
++E DY + A+P++Q++ + G ++++ G + + + + ++K+
Sbjct: 115 ALESQDYHLSFAKPYMQITQQLVYNHRLGTPTSIKDLKGKEVLILADSAHSKRVARLQKK 174
Query: 155 ISVFSQVPVENGELIQVLRL 174
+ P+ENG++I +L +
Sbjct: 175 FPNLTWRPIENGQMIDLLEM 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,835,736
Number of Sequences: 539616
Number of extensions: 2553253
Number of successful extensions: 5614
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5596
Number of HSP's gapped (non-prelim): 18
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)