Query 030212
Match_columns 181
No_of_seqs 187 out of 827
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1591 Prolyl 4-hydroxylase a 100.0 4E-35 8.6E-40 252.6 10.2 128 49-180 49-189 (289)
2 PLN00052 prolyl 4-hydroxylase; 100.0 9.3E-29 2E-33 215.1 12.3 105 74-180 41-145 (310)
3 smart00702 P4Hc Prolyl 4-hydro 99.7 1.9E-16 4.1E-21 126.1 9.5 93 87-180 1-96 (178)
4 PRK05467 Fe(II)-dependent oxyg 97.4 0.00051 1.1E-08 57.8 7.1 82 89-180 2-93 (226)
5 PF13532 2OG-FeII_Oxy_2: 2OG-F 71.7 28 0.00061 27.3 7.8 21 89-109 2-22 (194)
6 KOG3200 Uncharacterized conser 60.2 29 0.00062 28.8 5.7 86 82-178 7-99 (224)
7 PHA02813 hypothetical protein; 52.6 36 0.00078 30.7 5.6 75 103-180 27-107 (354)
8 PHA02869 C4L/C10L-like gene fa 48.5 21 0.00047 32.7 3.6 69 111-180 44-116 (418)
9 PHA02708 hypothetical protein; 39.8 31 0.00067 27.0 2.8 23 5-27 2-24 (148)
10 PF04194 PDCD2_C: Programmed c 36.6 42 0.00091 26.5 3.2 26 145-179 57-82 (164)
11 COG3128 PiuC Uncharacterized i 33.8 90 0.002 26.1 4.8 85 88-181 3-96 (229)
12 KOG3959 2-Oxoglutarate- and ir 33.1 47 0.001 28.8 3.1 69 86-161 71-146 (306)
13 PF06624 RAMP4: Ribosome assoc 31.4 25 0.00054 23.9 1.0 22 5-29 36-57 (63)
14 PF06364 DUF1068: Protein of u 30.3 75 0.0016 25.9 3.7 31 7-37 8-38 (176)
15 PF05721 PhyH: Phytanoyl-CoA d 28.9 64 0.0014 24.6 3.1 22 89-110 6-27 (211)
16 PF07894 DUF1669: Protein of u 28.4 59 0.0013 28.5 3.0 19 92-110 47-65 (284)
17 PF02529 PetG: Cytochrome B6-F 28.0 78 0.0017 19.3 2.6 23 7-29 7-29 (37)
18 PF06522 B12D: NADH-ubiquinone 27.5 49 0.0011 22.8 1.9 18 10-27 6-23 (73)
19 PF01448 ELM2: ELM2 domain; I 26.7 71 0.0015 20.3 2.5 27 80-111 28-54 (55)
20 PF11406 Tachystatin_A: Antimi 26.1 72 0.0016 19.6 2.2 19 55-73 21-39 (44)
21 cd08788 CARD_NOD2_2_CARD15 Cas 25.6 29 0.00063 24.9 0.5 15 92-106 25-39 (81)
22 smart00806 AIP3 Actin interact 25.3 55 0.0012 30.3 2.3 21 25-45 20-41 (426)
23 cd05568 PTS_IIB_bgl_like PTS_I 24.1 1.4E+02 0.0031 19.8 3.8 24 86-109 60-83 (85)
24 KOG3491 Predicted membrane pro 23.0 1.2E+02 0.0026 20.6 3.0 22 5-29 36-57 (65)
25 PRK06666 fliM flagellar motor 22.8 1.2E+02 0.0025 26.5 3.9 17 93-109 3-19 (337)
26 PF14089 KbaA: KinB-signalling 21.2 1.4E+02 0.0031 24.4 3.8 29 7-35 27-55 (180)
27 CHL00008 petG cytochrome b6/f 21.1 1.7E+02 0.0036 17.9 3.1 23 7-29 7-29 (37)
28 cd03071 PDI_b'_NRX PDIb' famil 21.0 1E+02 0.0022 23.4 2.7 89 75-181 4-96 (116)
29 cd00491 4Oxalocrotonate_Tautom 20.7 74 0.0016 19.8 1.7 35 145-179 17-55 (58)
30 PRK00665 petG cytochrome b6-f 20.1 1.9E+02 0.0041 17.6 3.2 23 7-29 7-29 (37)
No 1
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-35 Score=252.58 Aligned_cols=128 Identities=43% Similarity=0.648 Sum_probs=115.6
Q ss_pred ccccccccCCCc------------cEEEeCCCCcceEEeeccceEEeecCccEEEEcccCCHHHHHHHHHHhcCCceeeE
Q 030212 49 RQKNGYLQLPRG------------VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVST 116 (181)
Q Consensus 49 ~~~~~y~~lcrg------------L~C~y~~~~~pfl~LaP~K~E~Ls~~P~I~l~hdfLS~~Ecd~Li~lA~p~L~rS~ 116 (181)
.++..|+..|+| +.|++... ||++++|+|+|+|||+|++++||||||++|||+|+.+|+|+|++++
T Consensus 49 ~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~--~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~st 126 (289)
T KOG1591|consen 49 QEFTVYEQGCRGELPPLTKLTLRRLSCRNRAG--PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERST 126 (289)
T ss_pred ccccchhhhccCccCccchhHhhhhhcccccC--cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhcee
Confidence 556778888887 45555433 9999999999999999999999999999999999999999999999
Q ss_pred e-eeCCCCCceecceeeeeeeecCCCCCcchHHHHHHHHHHHhcCCCCCCCccceeeeeCCCcee
Q 030212 117 V-VDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRLTSAAAQ 180 (181)
Q Consensus 117 V-~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~ltGl~~~~~E~LQV~nYg~Gg~y 180 (181)
| .+.++|....+.+|+|+++||+.+. ++++++|++||+++||+|.+++|+|||+|||+||||
T Consensus 127 v~~~~~~~~~~~~~~R~S~~t~l~~~~--~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y 189 (289)
T KOG1591|consen 127 VVADKGTGHSTTSAVRTSSGTFLPDGA--SPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHY 189 (289)
T ss_pred eeccCCcccccceeeEecceeEecCCC--CHHHHHHHHHHHhccCCCcccCccceEEEecCCccc
Confidence 9 4556677777889999999999954 899999999999999999999999999999999998
No 2
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.96 E-value=9.3e-29 Score=215.06 Aligned_cols=105 Identities=42% Similarity=0.684 Sum_probs=100.0
Q ss_pred EeeccceEEeecCccEEEEcccCCHHHHHHHHHHhcCCceeeEeeeCCCCCceecceeeeeeeecCCCCCcchHHHHHHH
Q 030212 74 RLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEK 153 (181)
Q Consensus 74 ~LaP~K~E~Ls~~P~I~l~hdfLS~~Ecd~Li~lA~p~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~rI~~ 153 (181)
.+.|.|+|+||++|+|++||||||++||++||++|++++++|+|++..+|+...+++|||+++||...+ +|++++|++
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~--dpvv~~I~~ 118 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ--DPVVSRIEE 118 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCC--CHHHHHHHH
Confidence 458999999999999999999999999999999999999999999888888888899999999998765 899999999
Q ss_pred HHHHhcCCCCCCCccceeeeeCCCcee
Q 030212 154 RISVFSQVPVENGELIQVLRLTSAAAQ 180 (181)
Q Consensus 154 Ria~ltGl~~~~~E~LQV~nYg~Gg~y 180 (181)
||+++||+|.+++|.|||+||++||||
T Consensus 119 Ria~~t~lp~~~~E~lQVlrY~~Gq~Y 145 (310)
T PLN00052 119 RIAAWTFLPEENAENIQILRYEHGQKY 145 (310)
T ss_pred HHHHHhCCCcccCcceEEEecCCCCCC
Confidence 999999999999999999999999998
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.68 E-value=1.9e-16 Score=126.14 Aligned_cols=93 Identities=28% Similarity=0.325 Sum_probs=83.1
Q ss_pred ccEEEEcccCCHHHHHHHHHHhcCCceeeEeeeCCCCCceecceeeeeeeecCCCCCcchHHHHHHHHHHHhcCCC---C
Q 030212 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVP---V 163 (181)
Q Consensus 87 P~I~l~hdfLS~~Ecd~Li~lA~p~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~ltGl~---~ 163 (181)
|.|+++|||||++||+.|++++++...++.+.+..++....+++|+|+.+|+...+ .++++++|.+|++++++++ .
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~-~~~~~~~l~~~i~~~~~~~~~~~ 79 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLK-GDLVIERIRQRLADFLGLLRGLP 79 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCC-CCHHHHHHHHHHHHHHCCCchhh
Confidence 89999999999999999999999998899888765443356789999999998763 3699999999999999998 7
Q ss_pred CCCccceeeeeCCCcee
Q 030212 164 ENGELIQVLRLTSAAAQ 180 (181)
Q Consensus 164 ~~~E~LQV~nYg~Gg~y 180 (181)
...|.+|+++|++|++|
T Consensus 80 ~~~~~~~~~~Y~~g~~~ 96 (178)
T smart00702 80 LSAEDAQVARYGPGGHY 96 (178)
T ss_pred ccCcceEEEEECCCCcc
Confidence 89999999999999987
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.41 E-value=0.00051 Score=57.82 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=53.0
Q ss_pred EEEEcccCCHHHHHHHHHHhcC-CceeeEeeeCCCCCceecceeeeeeeecCCCCCcchHHHHHHHHHHHhc--------
Q 030212 89 ILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS-------- 159 (181)
Q Consensus 89 I~l~hdfLS~~Ecd~Li~lA~p-~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~lt-------- 159 (181)
|+.++|+||++||+++++..+. .+....+. .| ...+++|..... ..+ ++..+.|.+||....
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~t---aG-~~~~~vKnN~ql--~~d---~~~a~~l~~~i~~~L~~~~l~~s 72 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVT---AG-AQAAQVKNNQQL--PED---SPLARELGNLILDALTRNPLFFS 72 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcC---cC-ccchhccccccc--CCC---CHHHHHHHHHHHHHHhcCchhhh
Confidence 6789999999999999998763 23222221 11 123345554332 333 577777888777554
Q ss_pred -CCCCCCCccceeeeeCCCcee
Q 030212 160 -QVPVENGELIQVLRLTSAAAQ 180 (181)
Q Consensus 160 -Gl~~~~~E~LQV~nYg~Gg~y 180 (181)
++| ...+++.+.+|.+||+|
T Consensus 73 a~lp-~~i~~~~f~rY~~G~~y 93 (226)
T PRK05467 73 AALP-RKIHPPLFNRYEGGMSY 93 (226)
T ss_pred hccc-cccccceEEEECCCCcc
Confidence 233 23357889999999998
No 5
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=71.70 E-value=28 Score=27.26 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=17.7
Q ss_pred EEEEcccCCHHHHHHHHHHhc
Q 030212 89 ILVLHNFLSMEECDYLRAIAR 109 (181)
Q Consensus 89 I~l~hdfLS~~Ecd~Li~lA~ 109 (181)
+.+++||||++|.+.|.+...
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~ 22 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELR 22 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHH
Confidence 578999999999999988876
No 6
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.16 E-value=29 Score=28.76 Aligned_cols=86 Identities=15% Similarity=0.230 Sum_probs=51.2
Q ss_pred EeecCccEEEEcccCCHHHHHHHHHHhc----CCcee---eEeeeCCCCCceecceeeeeeeecCCCCCcchHHHHHHHH
Q 030212 82 VISWSPRILVLHNFLSMEECDYLRAIAR----PHLQV---STVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKR 154 (181)
Q Consensus 82 ~Ls~~P~I~l~hdfLS~~Ecd~Li~lA~----p~L~r---S~V~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~rI~~R 154 (181)
++-.-|.+++++|||+++|-..++...+ |+++. -...+. +| . .-+++-++++- -|..+++...
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNy-GG--v-----vh~~glipeel--P~wLq~~v~k 76 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNY-GG--V-----VHKTGLIPEEL--PPWLQYYVDK 76 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhc-CC--c-----cccCCcCcccc--CHHHHHHHHH
Confidence 4556789999999999999988876654 33211 001110 11 0 11233344322 5677777777
Q ss_pred HHHhcCCCCCCCccceeeeeCCCc
Q 030212 155 ISVFSQVPVENGELIQVLRLTSAA 178 (181)
Q Consensus 155 ia~ltGl~~~~~E~LQV~nYg~Gg 178 (181)
|.+ .|+=.+.+-..-|-.|.+||
T Consensus 77 inn-lglF~s~~NHVLVNeY~pgq 99 (224)
T KOG3200|consen 77 INN-LGLFKSPANHVLVNEYLPGQ 99 (224)
T ss_pred hhc-ccccCCCcceeEeecccCCC
Confidence 774 44433466667777899987
No 7
>PHA02813 hypothetical protein; Provisional
Probab=52.63 E-value=36 Score=30.71 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=50.0
Q ss_pred HHHHHhcCCceeeEeeeCCCC-CceecceeeeeeeecCCCCCcchHHHHHHHHHH-HhcCCC----CCCCccceeeeeCC
Q 030212 103 YLRAIARPHLQVSTVVDTKTG-KGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRIS-VFSQVP----VENGELIQVLRLTS 176 (181)
Q Consensus 103 ~Li~lA~p~L~rS~V~~~~tg-~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria-~ltGl~----~~~~E~LQV~nYg~ 176 (181)
.+++...-.+..|.+.+..+| +....+.|+++.+-++.. ..+..+|+.-+. .+.|.+ +.-.|.+-+.+|.+
T Consensus 27 ~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~---~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~k 103 (354)
T PHA02813 27 DMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL---DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEK 103 (354)
T ss_pred HHHhccccCccccceeccccCceEEccccccceEEEEcCH---HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECC
Confidence 333333345788888886555 445568999999988753 355666665555 344544 23578999999999
Q ss_pred Ccee
Q 030212 177 AAAQ 180 (181)
Q Consensus 177 Gg~y 180 (181)
|+.+
T Consensus 104 Gq~F 107 (354)
T PHA02813 104 GDFF 107 (354)
T ss_pred Cccc
Confidence 9854
No 8
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=48.46 E-value=21 Score=32.75 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=46.2
Q ss_pred CceeeEeeeCCCCC-ceecceeeeeeeecCCCCCcchHHHHHHHHHH-HhcCC--CCCCCccceeeeeCCCcee
Q 030212 111 HLQVSTVVDTKTGK-GIKSNVRTSSGMFLSPEEKKYPMIQAIEKRIS-VFSQV--PVENGELIQVLRLTSAAAQ 180 (181)
Q Consensus 111 ~L~rS~V~~~~tg~-~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria-~ltGl--~~~~~E~LQV~nYg~Gg~y 180 (181)
....|.+.+..+|. ......|+|++.-+.+.- ...+..+|+.-+- .+-|+ .+.-.|.+-+.+|.+|+.+
T Consensus 44 ~~~~s~i~~~~~g~e~~~~~~~ksKqii~e~~L-a~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F 116 (418)
T PHA02869 44 ICEDSKIFFPEKRTELLSIKDRKSKQIVFENSL-NDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYF 116 (418)
T ss_pred ccccceeeccccCceeEeeccccceeEEechHH-HHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCcc
Confidence 45789999877774 345678999999887532 1344444444443 34453 3345789999999999864
No 9
>PHA02708 hypothetical protein; Provisional
Probab=39.76 E-value=31 Score=26.95 Aligned_cols=23 Identities=39% Similarity=0.852 Sum_probs=21.2
Q ss_pred cchhHhHHHHHHHHHHHHHHHHH
Q 030212 5 PSMKIVFGLLTFVTFGMIIGALF 27 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (181)
|+.|.+++-+.||.+|...|+++
T Consensus 2 pslRRLl~alalvalgfalgalf 24 (148)
T PHA02708 2 PSLRRLLAALALVALGFALGALF 24 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhc
Confidence 67899999999999999999985
No 10
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=36.60 E-value=42 Score=26.54 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHhcCCCCCCCccceeeeeCCCce
Q 030212 145 YPMIQAIEKRISVFSQVPVENGELIQVLRLTSAAA 179 (181)
Q Consensus 145 ~pvv~rI~~Ria~ltGl~~~~~E~LQV~nYg~Gg~ 179 (181)
|.+..+..+||+.- +=||+||..||.
T Consensus 57 D~~f~~F~~rl~~~---------P~QvlRY~~gG~ 82 (164)
T PF04194_consen 57 DKAFLKFQKRLSRN---------PEQVLRYCRGGK 82 (164)
T ss_pred CHHHHHHHHHHhcC---------CCeEEEECCCCe
Confidence 68888999998853 579999999986
No 11
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=33.77 E-value=90 Score=26.15 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=46.6
Q ss_pred cEEEEcccCCHHHHHHHHHHhcC-CceeeEeeeCCCCCceecceeeeeeeecCCCCCcchHHHHHHHHHH-HhcCCC---
Q 030212 88 RILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRIS-VFSQVP--- 162 (181)
Q Consensus 88 ~I~l~hdfLS~~Ecd~Li~lA~p-~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria-~ltGl~--- 162 (181)
-...+..+||+++|..+.+.... ....-. .|-+..-.+.|... -++.+ ++..+.+..-|. +++..|
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~A~w~dGr----at~g~q~a~vk~n~--qlp~~---s~l~~~vg~~il~al~~~plff 73 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQAEWVDGR----ATQGPQGAQVKNNL--QLPQD---SALARELGNEILQALTAHPLFF 73 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhhccccccc----cccCcchhhhhccc--cCCcc---cHHHHHHHHHHHHHHHhchhHH
Confidence 35567899999999999876542 111111 11111112222221 22333 465555555554 233332
Q ss_pred ---C-CCCccceeeeeCCCceeC
Q 030212 163 ---V-ENGELIQVLRLTSAAAQV 181 (181)
Q Consensus 163 ---~-~~~E~LQV~nYg~Gg~y~ 181 (181)
. ...++.|..+|+.|+.|+
T Consensus 74 ~aALp~t~~~P~Fn~Y~eg~~f~ 96 (229)
T COG3128 74 AAALPRTCLPPLFNRYQEGDFFG 96 (229)
T ss_pred HhhcccccCCchhhhccCCCccc
Confidence 1 378889999999999875
No 12
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=33.09 E-value=47 Score=28.76 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=42.2
Q ss_pred CccEEEEcccCCHHHHHHHHHHhcCC---ceee----EeeeCCCCCceecceeeeeeeecCCCCCcchHHHHHHHHHHHh
Q 030212 86 SPRILVLHNFLSMEECDYLRAIARPH---LQVS----TVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVF 158 (181)
Q Consensus 86 ~P~I~l~hdfLS~~Ecd~Li~lA~p~---L~rS----~V~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~l 158 (181)
-|=|.++|||||.+|-+.|+++.... +..| .-+++++ +....+.||-.-+=++. ..+.+.+|+.+.
T Consensus 71 ~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKv-NFkk~Klkt~~F~G~P~------~~~~v~rrm~~y 143 (306)
T KOG3959|consen 71 IPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKV-NFKKKKLKTDTFVGMPE------YADMVLRRMSEY 143 (306)
T ss_pred cCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCcc-chhhhhhccCcccCCch------HHHHHHHHhhcc
Confidence 38899999999999999999987531 1122 1122221 12334556555444443 456677788876
Q ss_pred cCC
Q 030212 159 SQV 161 (181)
Q Consensus 159 tGl 161 (181)
.++
T Consensus 144 p~l 146 (306)
T KOG3959|consen 144 PVL 146 (306)
T ss_pred chh
Confidence 655
No 13
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=31.39 E-value=25 Score=23.91 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=16.1
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHH
Q 030212 5 PSMKIVFGLLTFVTFGMIIGALFQL 29 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (181)
|--.+++||+.||-+|- +++|+
T Consensus 36 pVgp~~L~l~iFVV~Gs---~ifqi 57 (63)
T PF06624_consen 36 PVGPWLLGLFIFVVCGS---AIFQI 57 (63)
T ss_pred CcCHHHHhhhheeeEcH---HHHHH
Confidence 45567899999998774 56665
No 14
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=30.28 E-value=75 Score=25.87 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=27.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030212 7 MKIVFGLLTFVTFGMIIGALFQLAFIRKLED 37 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (181)
.|.+++|+++..+|-|.||.+=--|.+.+..
T Consensus 8 lr~~l~llal~~a~yivGP~LYWh~~~~~~~ 38 (176)
T PF06364_consen 8 LRVVLVLLALCLAGYIVGPPLYWHLSEGLAA 38 (176)
T ss_pred HHHHHHHHHHHHHhheeCchHHHHHHHhhhc
Confidence 7999999999999999999998877777654
No 15
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=28.85 E-value=64 Score=24.55 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=17.6
Q ss_pred EEEEcccCCHHHHHHHHHHhcC
Q 030212 89 ILVLHNFLSMEECDYLRAIARP 110 (181)
Q Consensus 89 I~l~hdfLS~~Ecd~Li~lA~p 110 (181)
.+++.|+|+++|++.|.+....
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~ 27 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDR 27 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHH
Confidence 3689999999999999887754
No 16
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=28.44 E-value=59 Score=28.47 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=17.1
Q ss_pred EcccCCHHHHHHHHHHhcC
Q 030212 92 LHNFLSMEECDYLRAIARP 110 (181)
Q Consensus 92 ~hdfLS~~Ecd~Li~lA~p 110 (181)
..||||+.|+++|.+-++.
T Consensus 47 ~~~FLS~~Ei~~I~~~~~~ 65 (284)
T PF07894_consen 47 ERDFLSSEEIQYILENAED 65 (284)
T ss_pred CCCCCCHHHHHHHHHhccC
Confidence 4799999999999999974
No 17
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=28.04 E-value=78 Score=19.34 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHH
Q 030212 7 MKIVFGLLTFVTFGMIIGALFQL 29 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (181)
.-||+||+...-+|....|.+|.
T Consensus 7 ~GiVlGli~vtl~Glfv~Ay~QY 29 (37)
T PF02529_consen 7 SGIVLGLIPVTLAGLFVAAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHHHHHHHHH
Confidence 46899999888888888888886
No 18
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=27.52 E-value=49 Score=22.78 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 030212 10 VFGLLTFVTFGMIIGALF 27 (181)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (181)
|++|+.+|++|+..++.+
T Consensus 6 l~PL~~~vg~a~~~a~~~ 23 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATFY 23 (73)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 688999999888765543
No 19
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=26.65 E-value=71 Score=20.33 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=22.1
Q ss_pred eEEeecCccEEEEcccCCHHHHHHHHHHhcCC
Q 030212 80 PEVISWSPRILVLHNFLSMEECDYLRAIARPH 111 (181)
Q Consensus 80 ~E~Ls~~P~I~l~hdfLS~~Ecd~Li~lA~p~ 111 (181)
.|+|=|+| ++.+++.+++..+..|+.+
T Consensus 28 ~e~lvW~P-----~~~~~d~~l~~yl~~A~s~ 54 (55)
T PF01448_consen 28 EEELVWSP-----NNPLSDRKLEEYLKVAKSS 54 (55)
T ss_pred cceEeECC-----CCCCCHHHHHHHHHHHHhc
Confidence 46667888 5899999999999998753
No 20
>PF11406 Tachystatin_A: Antimicrobial peptide tachystatin A; InterPro: IPR022717 Tachystatin A contains a cysteine-stabilised triple-stranded beta-sheet and shows features common to membrane-interactive peptides. Tachystatin A is thought to have an antimicrobial activity similar to defensins.Tachystatin A is also a chitin-binding peptide []. ; PDB: 1CIX_A.
Probab=26.14 E-value=72 Score=19.62 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=9.2
Q ss_pred ccCCCccEEEeCCCCcceE
Q 030212 55 LQLPRGVTFWDNDKEAELL 73 (181)
Q Consensus 55 ~~lcrgL~C~y~~~~~pfl 73 (181)
...||||.|+-+..++.+=
T Consensus 21 ipccrgltcrsyfpgstyg 39 (44)
T PF11406_consen 21 IPCCRGLTCRSYFPGSTYG 39 (44)
T ss_dssp ----TT-EEEESSTT-S-E
T ss_pred ccccCCceeeeecCCcccc
Confidence 4579999999876665543
No 21
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=25.56 E-value=29 Score=24.85 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=12.9
Q ss_pred EcccCCHHHHHHHHH
Q 030212 92 LHNFLSMEECDYLRA 106 (181)
Q Consensus 92 ~hdfLS~~Ecd~Li~ 106 (181)
=++|+|++|||.|+.
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 478999999999875
No 22
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=25.35 E-value=55 Score=30.31 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhccCcCC-CCcc
Q 030212 25 ALFQLAFIRKLEDSYGT-DFPS 45 (181)
Q Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~ 45 (181)
+-+||+|+++..|++|+ |||+
T Consensus 20 ~~LrLlFvekFayspg~~~fPe 41 (426)
T smart00806 20 NALRLLFIEKFAYSPGGDDFPD 41 (426)
T ss_pred HHHHHHHHHHhccCCCCCCCcc
Confidence 45899999999999765 5654
No 23
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=24.12 E-value=1.4e+02 Score=19.78 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.2
Q ss_pred CccEEEEcccCCHHHHHHHHHHhc
Q 030212 86 SPRILVLHNFLSMEECDYLRAIAR 109 (181)
Q Consensus 86 ~P~I~l~hdfLS~~Ecd~Li~lA~ 109 (181)
+..|+.++.|++++|.+.|.+...
T Consensus 60 ~~pvi~i~~~l~~~d~~~i~~~i~ 83 (85)
T cd05568 60 DKPVIVVSPILTEEDIKKIRKFIK 83 (85)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHh
Confidence 446889999999999999987653
No 24
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=23.03 E-value=1.2e+02 Score=20.57 Aligned_cols=22 Identities=45% Similarity=0.769 Sum_probs=16.6
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHH
Q 030212 5 PSMKIVFGLLTFVTFGMIIGALFQL 29 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (181)
|..-+++||..||..|- |++|.
T Consensus 36 pvgPwLlglFvFVVcGS---a~FqI 57 (65)
T KOG3491|consen 36 PVGPWLLGLFVFVVCGS---ALFQI 57 (65)
T ss_pred CcchHHHHHHHHHhhcH---HHHHH
Confidence 56678999999998775 55554
No 25
>PRK06666 fliM flagellar motor switch protein FliM; Validated
Probab=22.79 E-value=1.2e+02 Score=26.50 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=14.1
Q ss_pred cccCCHHHHHHHHHHhc
Q 030212 93 HNFLSMEECDYLRAIAR 109 (181)
Q Consensus 93 hdfLS~~Ecd~Li~lA~ 109 (181)
.++||.+|||.|.+...
T Consensus 3 ~~~LSQ~EIdaLL~~~~ 19 (337)
T PRK06666 3 DDILSQEEIDALLSGVS 19 (337)
T ss_pred ccccCHHHHHHHHhccc
Confidence 47999999999987543
No 26
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=21.17 E-value=1.4e+02 Score=24.45 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=24.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030212 7 MKIVFGLLTFVTFGMIIGALFQLAFIRKL 35 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (181)
+.++.+++.+..+||+....||.-|.-=|
T Consensus 27 ~e~~~~~~~~~~~G~~~SviSQMGFFAYL 55 (180)
T PF14089_consen 27 GEILAGLFWLIGVGFTFSVISQMGFFAYL 55 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999886443
No 27
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=21.14 E-value=1.7e+02 Score=17.85 Aligned_cols=23 Identities=30% Similarity=0.584 Sum_probs=17.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHH
Q 030212 7 MKIVFGLLTFVTFGMIIGALFQL 29 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (181)
.-||+||+.....|....|.+|-
T Consensus 7 ~GiVLGlipvTl~GlfvaAylQY 29 (37)
T CHL00008 7 FGIVLGLIPITLAGLFVTAYLQY 29 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHH
Confidence 46888988777777777777775
No 28
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=21.02 E-value=1e+02 Score=23.43 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=45.8
Q ss_pred eeccceEEeecCccEEEEcccCCHHHHHHHHHH----hcCCceeeEeeeCCCCCceecceeeeeeeecCCCCCcchHHHH
Q 030212 75 LGYVKPEVISWSPRILVLHNFLSMEECDYLRAI----ARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQA 150 (181)
Q Consensus 75 LaP~K~E~Ls~~P~I~l~hdfLS~~Ecd~Li~l----A~p~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~r 150 (181)
|-+...-.||.+|.+++|-|-=.+.|.+.-+.+ |+......+. .|.. . --.|+-..+ ++++..
T Consensus 4 Lse~~a~~Ln~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~----k~~d---a----p~~f~~a~e--de~tds 70 (116)
T cd03071 4 LSESNAVQLNEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKA----KEEE---A----PLLFFVAGE--DDMTDS 70 (116)
T ss_pred ccHHHHHhhcCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhc----cCCC---c----ceeeeeecc--chHHHH
Confidence 444455578999999999875444344433332 2222211111 1111 1 123444433 566555
Q ss_pred HHHHHHHhcCCCCCCCccceeeeeCCCceeC
Q 030212 151 IEKRISVFSQVPVENGELIQVLRLTSAAAQV 181 (181)
Q Consensus 151 I~~Ria~ltGl~~~~~E~LQV~nYg~Gg~y~ 181 (181)
++++++|| +.+-.|-|++-..-+.||
T Consensus 71 ----LRDf~nL~-d~~P~LviLDip~r~~~v 96 (116)
T cd03071 71 ----LRDYTNLP-EAAPLLTILDMSARAKYV 96 (116)
T ss_pred ----HHHhcCCC-ccCceEEEEeccccceEe
Confidence 67889997 444456666555544443
No 29
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=20.67 E-value=74 Score=19.84 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHhcCCCCCC----CccceeeeeCCCce
Q 030212 145 YPMIQAIEKRISVFSQVPVEN----GELIQVLRLTSAAA 179 (181)
Q Consensus 145 ~pvv~rI~~Ria~ltGl~~~~----~E~LQV~nYg~Gg~ 179 (181)
..+.+.|.+.+...+|.|.+. .+...--+|+.||.
T Consensus 17 ~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~~~gg~ 55 (58)
T cd00491 17 RELIERVTEAVSEILGAPEATIVVIIDEMPKENWGIGGE 55 (58)
T ss_pred HHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhceECCE
Confidence 578888999999999998653 44455566777765
No 30
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=20.06 E-value=1.9e+02 Score=17.65 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=17.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHH
Q 030212 7 MKIVFGLLTFVTFGMIIGALFQL 29 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (181)
.-||+||+....+|....|.+|-
T Consensus 7 ~GiVLGlipiTl~GlfvaAylQY 29 (37)
T PRK00665 7 CGIVLGLIPVTLAGLFVAAWNQY 29 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHH
Confidence 46888988777777777777775
Done!