Query 030212
Match_columns 181
No_of_seqs 187 out of 827
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jig_A Prolyl-4 hydroxylase; h 99.9 9.3E-26 3.2E-30 185.1 10.8 106 73-180 6-111 (224)
2 3itq_A Prolyl 4-hydroxylase, a 99.9 2.2E-24 7.6E-29 177.9 6.4 95 78-180 30-124 (216)
3 3dkq_A PKHD-type hydroxylase S 99.1 2.2E-10 7.4E-15 95.8 7.0 91 81-180 13-112 (243)
4 2hbt_A EGL nine homolog 1; pro 98.3 1.3E-06 4.3E-11 72.7 8.4 92 87-180 26-131 (247)
5 2iuw_A Alkylated repair protei 89.4 3 0.0001 33.8 9.9 84 87-178 40-137 (238)
6 3s57_A Alpha-ketoglutarate-dep 70.4 33 0.0011 26.8 9.3 89 82-178 5-111 (204)
7 3tht_A Alkylated DNA repair pr 60.7 30 0.001 29.5 7.8 27 83-109 107-133 (345)
8 1x5v_A PCFK1; inhibitory cysti 45.7 7.3 0.00025 22.1 0.9 12 55-66 16-27 (34)
9 1o51_A Hypothetical protein TM 41.6 18 0.0006 26.1 2.8 74 102-175 33-114 (114)
10 2lx0_A Membrane fusion protein 40.7 26 0.00089 19.4 2.7 20 9-28 11-30 (32)
11 1q90_G Cytochrome B6F complex 40.2 29 0.00099 20.3 3.0 24 6-29 6-29 (37)
12 1vf5_G Protein PET G; photosyn 31.0 37 0.0013 19.9 2.4 24 6-29 6-29 (37)
13 3kt7_A PKHD-type hydroxylase T 29.2 2.6E+02 0.009 26.0 9.1 87 86-180 32-137 (633)
14 3i3q_A Alpha-ketoglutarate-dep 27.4 1.6E+02 0.0054 23.1 6.5 32 147-178 85-116 (211)
15 3dgp_A RNA polymerase II trans 24.8 52 0.0018 22.4 2.7 22 89-110 23-44 (80)
No 1
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=99.93 E-value=9.3e-26 Score=185.12 Aligned_cols=106 Identities=40% Similarity=0.622 Sum_probs=99.6
Q ss_pred EEeeccceEEeecCccEEEEcccCCHHHHHHHHHHhcCCceeeEeeeCCCCCceecceeeeeeeecCCCCCcchHHHHHH
Q 030212 73 LRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIE 152 (181)
Q Consensus 73 l~LaP~K~E~Ls~~P~I~l~hdfLS~~Ecd~Li~lA~p~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~rI~ 152 (181)
..++|.|+|+||++|+|++||||||++||++|++++++++++|++.+..+|....+.+|+|+++||+..+ ++++++|.
T Consensus 6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~--~~~~~~i~ 83 (224)
T 2jig_A 6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE--DSVISKIE 83 (224)
T ss_dssp -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTC--SHHHHHHH
T ss_pred ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCC--CHHHHHHH
Confidence 3578999999999999999999999999999999999999999999887777778899999999999864 79999999
Q ss_pred HHHHHhcCCCCCCCccceeeeeCCCcee
Q 030212 153 KRISVFSQVPVENGELIQVLRLTSAAAQ 180 (181)
Q Consensus 153 ~Ria~ltGl~~~~~E~LQV~nYg~Gg~y 180 (181)
+||++++|+|....|.+||+||++||+|
T Consensus 84 ~ri~~~~gl~~~~~e~~qv~rY~~G~~y 111 (224)
T 2jig_A 84 KRVAQVTMIPLENHEGLQVLHYHDGQKY 111 (224)
T ss_dssp HHHHHHHTCCGGGBCCCEEEEEETTCCE
T ss_pred HHHHHHhCCCcccccceEEEecCCCccc
Confidence 9999999999999999999999999998
No 2
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=99.90 E-value=2.2e-24 Score=177.91 Aligned_cols=95 Identities=35% Similarity=0.438 Sum_probs=83.1
Q ss_pred cceEEeecCccEEEEcccCCHHHHHHHHHHhcCCceeeEeeeCCCCCceecceeeeeeeecCCCCCcchHHHHHHHHHHH
Q 030212 78 VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISV 157 (181)
Q Consensus 78 ~K~E~Ls~~P~I~l~hdfLS~~Ecd~Li~lA~p~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~ 157 (181)
++++++|++|+|++||||||++||++|+++|++++++|+|... ...+++|||+++||++ ++++++|++||++
T Consensus 30 v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~----~~~~~~RtS~~~wl~~----~~~v~~i~~Ri~~ 101 (216)
T 3itq_A 30 IQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS----RDVNDIRTSSGAFLDD----NELTAKIEKRISS 101 (216)
T ss_dssp EEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC------------CCCCGGGTTCEECCC----CHHHHHHHHHHHH
T ss_pred EEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC----CccCCcEeeeeEEeCC----cHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999998321 3457899999999987 4999999999999
Q ss_pred hcCCCCCCCccceeeeeCCCcee
Q 030212 158 FSQVPVENGELIQVLRLTSAAAQ 180 (181)
Q Consensus 158 ltGl~~~~~E~LQV~nYg~Gg~y 180 (181)
++|++.+++|.+||+||++||+|
T Consensus 102 ~~gl~~~~~E~lqv~~Y~~G~~y 124 (216)
T 3itq_A 102 IMNVPASHGEGLHILNYEVDQQY 124 (216)
T ss_dssp HHTSCGGGBCCCEEEEECBTCCE
T ss_pred hcCceeccccceeEEEeCCCCcc
Confidence 99999999999999999999998
No 3
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=99.06 E-value=2.2e-10 Score=95.78 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=69.4
Q ss_pred EEeecCccEEEEcccCCHHHHHHHHHHhcC-CceeeEeeeCCCCCceecceeeeeeeecCCCCCcchHHHHHHHHHHHhc
Q 030212 81 EVISWSPRILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS 159 (181)
Q Consensus 81 E~Ls~~P~I~l~hdfLS~~Ecd~Li~lA~p-~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~lt 159 (181)
|-|-.++.++++|||||++||+.|+++++. .+.++.+. +.. ...++.++.|+..+ +|++++|.+||.+++
T Consensus 13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~t----~g~--~~~~vr~n~~l~~d---~~~~~~l~~~i~~~l 83 (243)
T 3dkq_A 13 ENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQT----SGA--MATTRKRNQQLDKD---DPVAVALGQQIMDRL 83 (243)
T ss_dssp -CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECCC----SSB--SSCCCEEEEECCTT---CHHHHHHHHHHHHHH
T ss_pred cccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCccc----CCC--ccccceeeeEECCC---CHHHHHHHHHHHHHH
Confidence 445568999999999999999999999964 34443332 111 12344566788854 699999999999999
Q ss_pred CCC--------CCCCccceeeeeCCCcee
Q 030212 160 QVP--------VENGELIQVLRLTSAAAQ 180 (181)
Q Consensus 160 Gl~--------~~~~E~LQV~nYg~Gg~y 180 (181)
+.. ....|++|+++|++||+|
T Consensus 84 ~~~~~f~~~~L~~~~e~~~~~rY~~G~~y 112 (243)
T 3dkq_A 84 LAHPQFVSAALPLQFYPPLFNRYQGGETF 112 (243)
T ss_dssp HTCHHHHHHHCEEEEEEEEEEEECTTCEE
T ss_pred ccCcchhhcccccccccceEEEECCCCee
Confidence 887 246889999999999998
No 4
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=98.35 E-value=1.3e-06 Score=72.74 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=62.5
Q ss_pred ccEEEEcccCCHHHHHHHHHHhcC-----CceeeEeeeCCCCCceecceeeeeeeecCCCCCcch----HHHHHHHHHHH
Q 030212 87 PRILVLHNFLSMEECDYLRAIARP-----HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP----MIQAIEKRISV 157 (181)
Q Consensus 87 P~I~l~hdfLS~~Ecd~Li~lA~p-----~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~~~~p----vv~rI~~Ria~ 157 (181)
+-+++++|||+++||+.|++.+.. .++++.+.+. ........|+++.+|+...+...+ ..++|++.+..
T Consensus 26 ~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l~~~ 103 (247)
T 2hbt_A 26 HGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRH 103 (247)
T ss_dssp TSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCSTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccccchhHHHHHHHHHHHHHHH
Confidence 446789999999999999999864 4677777652 233556899999999998641122 34455554444
Q ss_pred hcC-CCCC---CCccceeeeeCC-Ccee
Q 030212 158 FSQ-VPVE---NGELIQVLRLTS-AAAQ 180 (181)
Q Consensus 158 ltG-l~~~---~~E~LQV~nYg~-Gg~y 180 (181)
+.+ +... ..+.+|+++|.+ |++|
T Consensus 104 ln~~lGl~~i~~~~e~~~~~Y~~~G~~y 131 (247)
T 2hbt_A 104 CNGKLGSYKINGRTKAMVACYPGNGTGY 131 (247)
T ss_dssp TTTTSTTCCEEEECCEEEEEECSSSCCE
T ss_pred HhhhcCcccccccceEEEEEecCCCCcc
Confidence 333 1211 136699999997 8887
No 5
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=89.37 E-value=3 Score=33.78 Aligned_cols=84 Identities=11% Similarity=0.131 Sum_probs=49.5
Q ss_pred ccEEEEcccCCHHHHHHHHHHhc--CCceeeEeeeCCCCCceecceeeeeeeecCCC----------C--CcchHHHHHH
Q 030212 87 PRILVLHNFLSMEECDYLRAIAR--PHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPE----------E--KKYPMIQAIE 152 (181)
Q Consensus 87 P~I~l~hdfLS~~Ecd~Li~lA~--p~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~----------~--~~~pvv~rI~ 152 (181)
|-+.+++|||+++|.+.|.+.-. -.++...... -|+......++ +|+... . .=.+.+..|.
T Consensus 40 ~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~--~g~~~~~~R~~---~~~g~~~Y~Ys~~~~~~~p~wp~~l~~l~ 114 (238)
T 2iuw_A 40 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIR--EDITYQQPRLT---AWYGELPYTYSRITMEPNPHWHPVLRTLK 114 (238)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEES--SSCEEECSSEE---EEEECCCTTSCHHHHCCBSSCCHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHhCCCccCceec--CCcccccCCee---EEcCCCccccCCcccCCCCCCCHHHHHHH
Confidence 45999999999999999887742 2233322211 12222222222 344310 0 0036788889
Q ss_pred HHHHHhcCCCCCCCccceeeeeCCCc
Q 030212 153 KRISVFSQVPVENGELIQVLRLTSAA 178 (181)
Q Consensus 153 ~Ria~ltGl~~~~~E~LQV~nYg~Gg 178 (181)
+++++.+|.+.+ ..-|..|..|+
T Consensus 115 ~~~~~~~g~~~n---~~LvN~Y~~G~ 137 (238)
T 2iuw_A 115 NRIEENTGHTFN---SLLCNLYRNEK 137 (238)
T ss_dssp HHHHHHHSCCCC---EEEEEEECSTT
T ss_pred HHHHHHhCCCCC---EEEEEEECCCC
Confidence 999988886543 45566788886
No 6
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=70.40 E-value=33 Score=26.83 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=51.5
Q ss_pred EeecCccEEEEcccCCHHHHHHHHHHh--cCCc---eeeEeeeCCCCCceecceeeeeeeecCCCC-------------C
Q 030212 82 VISWSPRILVLHNFLSMEECDYLRAIA--RPHL---QVSTVVDTKTGKGIKSNVRTSSGMFLSPEE-------------K 143 (181)
Q Consensus 82 ~Ls~~P~I~l~hdfLS~~Ecd~Li~lA--~p~L---~rS~V~~~~tg~~~~s~~RtS~~awL~~~~-------------~ 143 (181)
.+--+=..+.|.+||+++|++.|.+.- +..+ +...+.- .|+..... |. ++|..+.. .
T Consensus 5 ~~~~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~--~gk~~~~p-R~--~~wyg~~~~~Y~Ysg~~~~~~p 79 (204)
T 3s57_A 5 HIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQV--FGKWHSVP-RK--QATYGDAGLTYTFSGLTLSPKP 79 (204)
T ss_dssp EEEETTEEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEE--TTEEEECS-SE--EEEEECTTCCEEETTEEECCEE
T ss_pred eeeeCCceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEE--CCeEeccC-cE--EEEECCCCCCcccCCCcccCCC
Confidence 334445567899999999999887653 2333 2222211 12222111 21 23443210 0
Q ss_pred cchHHHHHHHHHHHhcCCCCCCCccceeeeeCCCc
Q 030212 144 KYPMIQAIEKRISVFSQVPVENGELIQVLRLTSAA 178 (181)
Q Consensus 144 ~~pvv~rI~~Ria~ltGl~~~~~E~LQV~nYg~Gg 178 (181)
=.|.+..|.+++++++|.+.+. .-|..|.+|+
T Consensus 80 wp~~L~~l~~~~~~~~g~~~n~---~LvN~Y~~G~ 111 (204)
T 3s57_A 80 WIPVLERIRDHVSGVTGQTFNF---VLINRYKDGS 111 (204)
T ss_dssp CCHHHHHHHHHHHHHHCCCCSE---EEEEEESSTT
T ss_pred CCHHHHHHHHHHHHHhCCCCce---eEEEEECCCC
Confidence 0478999999999999876544 3466688876
No 7
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=60.75 E-value=30 Score=29.53 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=21.7
Q ss_pred eecCccEEEEcccCCHHHHHHHHHHhc
Q 030212 83 ISWSPRILVLHNFLSMEECDYLRAIAR 109 (181)
Q Consensus 83 Ls~~P~I~l~hdfLS~~Ecd~Li~lA~ 109 (181)
.+.-|=+.+++||||++|.+.|++...
T Consensus 107 ~~lp~Gl~~~p~fis~~Ee~~Ll~~i~ 133 (345)
T 3tht_A 107 QALPPGLMVVEEIISSEEEKMLLESVD 133 (345)
T ss_dssp CSCCTTEEEETTCSCHHHHHHHHTTCC
T ss_pred ccCCCceEEEcCcCCHHHHHHHHHhcc
Confidence 344566999999999999999876553
No 8
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=45.67 E-value=7.3 Score=22.08 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=9.9
Q ss_pred ccCCCccEEEeC
Q 030212 55 LQLPRGVTFWDN 66 (181)
Q Consensus 55 ~~lcrgL~C~y~ 66 (181)
..-|+||-|||-
T Consensus 16 ~~cc~glqcryg 27 (34)
T 1x5v_A 16 NPCCRGLQCRYG 27 (34)
T ss_dssp CCBCTTEEEETE
T ss_pred CccceeeeeccC
Confidence 457999999994
No 9
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=41.64 E-value=18 Score=26.14 Aligned_cols=74 Identities=22% Similarity=0.160 Sum_probs=37.8
Q ss_pred HHHHHHhc-CCceeeEeeeCCCCCceecceeeeeeeecCCCC-------CcchHHHHHHHHHHHhcCCCCCCCccceeee
Q 030212 102 DYLRAIAR-PHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE-------KKYPMIQAIEKRISVFSQVPVENGELIQVLR 173 (181)
Q Consensus 102 d~Li~lA~-p~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~-------~~~pvv~rI~~Ria~ltGl~~~~~E~LQV~n 173 (181)
+.|++.++ ..+.-++|..+-.|.......++++.-.|+.+- +..+-++++-.++..+..--.-..|+.||++
T Consensus 33 ~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v~~Glvt~e~V~V~r 112 (114)
T 1o51_A 33 EYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNIDFDGLVFTADVNVVK 112 (114)
T ss_dssp HHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTCCCCSEEEEEEEECCC
T ss_pred HHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHhCCCEEEEEEEEEEe
Confidence 45566664 467788888776666555555665544444321 1134567777777776663334678889998
Q ss_pred eC
Q 030212 174 LT 175 (181)
Q Consensus 174 Yg 175 (181)
|+
T Consensus 113 ~~ 114 (114)
T 1o51_A 113 MG 114 (114)
T ss_dssp --
T ss_pred cC
Confidence 84
No 10
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=40.71 E-value=26 Score=19.38 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 030212 9 IVFGLLTFVTFGMIIGALFQ 28 (181)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (181)
.+..||||..+|.-.--.+|
T Consensus 11 glvalltflafgfwlfkylq 30 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678899998876554444
No 11
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=40.23 E-value=29 Score=20.33 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=19.9
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHH
Q 030212 6 SMKIVFGLLTFVTFGMIIGALFQL 29 (181)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (181)
-.-||+||+....+|....|.+|.
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 356899999888888888888886
No 12
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=31.01 E-value=37 Score=19.86 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=17.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHH
Q 030212 6 SMKIVFGLLTFVTFGMIIGALFQL 29 (181)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (181)
-.-||+||+...-+|....|.+|.
T Consensus 6 L~GIVlGlipvtl~GLfv~Ay~Qy 29 (37)
T 1vf5_G 6 LDGLVLGLVFATLGGLFYAAYQQY 29 (37)
T ss_dssp ---CHHHHHHHHHHHHTHHHHHHT
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 346899999888888888888885
No 13
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A
Probab=29.23 E-value=2.6e+02 Score=25.96 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=47.5
Q ss_pred Ccc-EEEEcccCCHHHHHHHHHHhcCCceeeEeeeCCCCCceecceeeeeeeecCCCC-------CcchHHH--------
Q 030212 86 SPR-ILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE-------KKYPMIQ-------- 149 (181)
Q Consensus 86 ~P~-I~l~hdfLS~~Ecd~Li~lA~p~L~rS~V~~~~tg~~~~s~~RtS~~awL~~~~-------~~~pvv~-------- 149 (181)
+|+ -++++|||.++-.+.+.+-....+.-.... + .-+..-++.+|.... ...|.+.
T Consensus 32 ~PFpH~VIdnfl~d~lle~V~~Efp~~i~f~~Ke---t-----DlYk~~QsgdLanl~~l~~e~l~~lp~l~~Lr~~L~S 103 (633)
T 3kt7_A 32 QPYNWGTIHELVNDDLLRAVRKEIETEIHFTKKE---T-----DIYRVNQSGDLANLSGLDWDDLSRLPNLFKLRQILYS 103 (633)
T ss_dssp SSSCCEEESSCBCHHHHHHHHHHHHHHCCCEEEE---C-----SSEEEEECCCTTCTTSCCTTCCTTCHHHHHHHHHHTS
T ss_pred CCcceEEECCCCCHHHHHHHHHHhhhccCccccc---c-----cccceeccccccccccCChhhhccChHHHHHHHHHhc
Confidence 444 468999999988888877654222111000 0 012222233432110 0123333
Q ss_pred -HHHHHHHHhcCC-CCC-CCccceeeeeCCCcee
Q 030212 150 -AIEKRISVFSQV-PVE-NGELIQVLRLTSAAAQ 180 (181)
Q Consensus 150 -rI~~Ria~ltGl-~~~-~~E~LQV~nYg~Gg~y 180 (181)
.+.+-++.+||+ +.. .--.+++..|+.|++|
T Consensus 104 ~~Fr~~Ls~iTGi~~Lsg~~~D~~~a~Y~~G~fL 137 (633)
T 3kt7_A 104 KQYRDFFGYVTKAGKLSGSKTDMSINTYTKGCHL 137 (633)
T ss_dssp HHHHHHHHHHHTCCCCCSSCCCEEEEEECTTCEE
T ss_pred HHHHHHHHHHhCCcccCCCceeEEEEEeCCCCee
Confidence 345566789998 553 2234899999999987
No 14
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=27.41 E-value=1.6e+02 Score=23.12 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCccceeeeeCCCc
Q 030212 147 MIQAIEKRISVFSQVPVENGELIQVLRLTSAA 178 (181)
Q Consensus 147 vv~rI~~Ria~ltGl~~~~~E~LQV~nYg~Gg 178 (181)
.+..+.+|++..+|++.-..+..-|..|.+|+
T Consensus 85 ~L~~l~~~~~~~~g~~~~~pn~~LvN~Y~~G~ 116 (211)
T 3i3q_A 85 SFHNLCQRAATAAGYPDFQPDACLINRYAPGA 116 (211)
T ss_dssp HHHHHHHHHHHHTTCTTCCCCEEEEEEECTTC
T ss_pred HHHHHHHHHHHhcCCCCcCCCEEEEEEEcCCC
Confidence 78889999998888754444566677798886
No 15
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=24.84 E-value=52 Score=22.39 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.0
Q ss_pred EEEEcccCCHHHHHHHHHHhcC
Q 030212 89 ILVLHNFLSMEECDYLRAIARP 110 (181)
Q Consensus 89 I~l~hdfLS~~Ecd~Li~lA~p 110 (181)
-++|.||.|.+|-+.+.+.|+.
T Consensus 23 g~Ly~~F~s~~efe~~~~yA~e 44 (80)
T 3dgp_A 23 GSLYSDFETSQEYNLLSKYAQD 44 (80)
T ss_dssp EEEEECCSCHHHHHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHH
Confidence 5799999999999999999974
Done!