BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030213
         (181 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q68WJ1|Y532_RICTY Uncharacterized RNA pseudouridine synthase RT0532 OS=Rickettsia
           typhi (strain ATCC VR-144 / Wilmington) GN=RT0532 PE=3
           SV=1
          Length = 242

 Score = 31.6 bits (70), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 20  SNCGFLSHQFVSPSASQFGSRSQSIR-FGNAYKFLGNTFPNLKHKIEG--YSAWSSK 73
           +N G L+HQF  PS+     R  ++R +GNA   L N + NL  KI+G  Y+ +S K
Sbjct: 112 TNSGDLAHQFEMPSSKL--KRVYNVRAYGNANFLLKNNYNNL--KIDGIFYNPYSIK 164


>sp|P31973|FENR_SYNP2 Ferredoxin--NADP reductase OS=Synechococcus sp. (strain ATCC 27264
           / PCC 7002 / PR-6) GN=petH PE=1 SV=1
          Length = 402

 Score = 31.6 bits (70), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 84  GSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEG 130
            S TK+  P   ++S+PV I+    PF GK      C   ++LV+EG
Sbjct: 97  ASSTKIVHPKTTDTSVPVNIYRPKTPFLGK------CIENYELVDEG 137


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,778,239
Number of Sequences: 539616
Number of extensions: 2952847
Number of successful extensions: 5412
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5412
Number of HSP's gapped (non-prelim): 2
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)