Query 030213
Match_columns 181
No_of_seqs 22 out of 24
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 16:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yev_B Cytochrome C oxidase su 29.3 17 0.00058 30.7 0.0 36 140-175 81-116 (337)
2 2gsm_B Cytochrome C oxidase su 19.8 17 0.00057 30.3 -0.8 30 142-171 75-104 (262)
3 3hb3_B Cytochrome C oxidase su 15.7 26 0.0009 29.9 -0.5 32 141-172 105-136 (298)
4 1v54_B Cytochrome C oxidase po 15.3 24 0.00082 28.7 -0.8 31 141-171 60-90 (227)
5 3c2q_A Uncharacterized conserv 15.1 50 0.0017 29.6 1.1 14 140-153 134-147 (345)
6 3p9y_A CG14216, LD40846P; phos 14.0 63 0.0021 26.9 1.3 15 72-86 9-23 (198)
7 2i7c_A Spermidine synthase; tr 12.7 67 0.0023 25.5 1.1 23 146-169 259-281 (283)
8 2cmg_A Spermidine synthase; tr 12.7 72 0.0025 25.4 1.3 28 145-173 234-261 (262)
9 2o07_A Spermidine synthase; st 10.1 1.1E+02 0.0036 24.9 1.5 25 145-170 278-302 (304)
10 3bwc_A Spermidine synthase; SA 7.7 1.1E+02 0.0036 24.6 0.5 24 145-169 279-302 (304)
No 1
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=29.33 E-value=17 Score=30.70 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=27.2
Q ss_pred CCcceEEeehhHHHHhHhhcchhhhhHHHHHHhccc
Q 030213 140 DKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDN 175 (181)
Q Consensus 140 ~~~SlLW~lGP~vLVASfilP~lyLrkVisavfeDS 175 (181)
..--++|.+.|++++..+.+|++.+-..++..-++.
T Consensus 81 ~~lE~~wt~~P~~il~~l~~~s~~~~~~~~~~~~~~ 116 (337)
T 2yev_B 81 DRLEVVWTLIPLAIVFVLFGLTAKALIQVNRPIPGA 116 (337)
Confidence 345689999999999999999987665555544443
No 2
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=19.82 E-value=17 Score=30.26 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=24.1
Q ss_pred cceEEeehhHHHHhHhhcchhhhhHHHHHH
Q 030213 142 GSFLWILAPVVLISSLILPQMFLGNVIEDF 171 (181)
Q Consensus 142 ~SlLW~lGP~vLVASfilP~lyLrkVisav 171 (181)
--++|-+.|++++..+.+|++.+-..++..
T Consensus 75 lEiiWTiiP~iILi~la~pS~~~ly~~~~~ 104 (262)
T 2gsm_B 75 LEIAWTIVPIVILVAIGAFSLPVLFNQQEI 104 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 357899999999999999998765555543
No 3
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=15.69 E-value=26 Score=29.94 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=24.7
Q ss_pred CcceEEeehhHHHHhHhhcchhhhhHHHHHHh
Q 030213 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDFI 172 (181)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkVisavf 172 (181)
.--++|-+.|++++..+.+|++.+-...+..-
T Consensus 105 ~LEiiWTiiP~iILi~La~pSl~~ly~~~e~~ 136 (298)
T 3hb3_B 105 PIEVIWTLVPVLILVAIGAFSLPILFRSQEMP 136 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 34578999999999999999997754444433
No 4
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=15.34 E-value=24 Score=28.71 Aligned_cols=31 Identities=13% Similarity=0.509 Sum_probs=24.0
Q ss_pred CcceEEeehhHHHHhHhhcchhhhhHHHHHH
Q 030213 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDF 171 (181)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkVisav 171 (181)
.--++|-+.|++++..+.+|++.+-..++..
T Consensus 60 ~lEiiWTiiP~iil~~la~ps~~~ly~~d~~ 90 (227)
T 1v54_B 60 EVETIWTILPAIILILIALPSLRILYMMDEI 90 (227)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeEEeeehHHHHHHHHHHHHHHHHHHhhccc
Confidence 3457899999999999999998655444443
No 5
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=15.08 E-value=50 Score=29.58 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=12.4
Q ss_pred CCcceEEeehhHHH
Q 030213 140 DKGSFLWILAPVVL 153 (181)
Q Consensus 140 ~~~SlLW~lGP~vL 153 (181)
+.|.++|++||+|.
T Consensus 134 ~gG~Iv~V~GPAvv 147 (345)
T 3c2q_A 134 GTGGIAIVGGPAII 147 (345)
T ss_dssp SSCCEEEEECTHHH
T ss_pred CCCeEEEEecCeEe
Confidence 48999999999985
No 6
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=13.99 E-value=63 Score=26.91 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=12.2
Q ss_pred cccceeEeecCCCCC
Q 030213 72 SKRGAILCASNSGSD 86 (181)
Q Consensus 72 ~~r~~~~cssnS~~~ 86 (181)
.-|.+++||||-|+-
T Consensus 9 ~l~~avVCaSN~NRS 23 (198)
T 3p9y_A 9 KLAVAVVDSSNMNRS 23 (198)
T ss_dssp CCEEEEEESSSSSHH
T ss_pred CceEEEEcCCCCccc
Confidence 368899999998864
No 7
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=12.70 E-value=67 Score=25.51 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=20.6
Q ss_pred EeehhHHHHhHhhcchhhhhHHHH
Q 030213 146 WILAPVVLISSLILPQMFLGNVIE 169 (181)
Q Consensus 146 W~lGP~vLVASfilP~lyLrkVis 169 (181)
.+.-|-+..|+|.||. |+++.|+
T Consensus 259 ~~~~~~~~~~~f~~p~-~~~~~~~ 281 (283)
T 2i7c_A 259 KYYNYENHSAAFKLPA-FLLKEIE 281 (283)
T ss_dssp SSCCHHHHHHTTCCCH-HHHHHHT
T ss_pred ceECHHHHHHHhcCcH-HHHHHhh
Confidence 7899999999999999 7888775
No 8
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=12.67 E-value=72 Score=25.39 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=22.4
Q ss_pred EEeehhHHHHhHhhcchhhhhHHHHHHhc
Q 030213 145 LWILAPVVLISSLILPQMFLGNVIEDFIK 173 (181)
Q Consensus 145 LW~lGP~vLVASfilP~lyLrkVisavfe 173 (181)
+.+.-|-+..|+|++|. |+++.|+.+.+
T Consensus 234 ~~~y~~~~h~~~f~lp~-~~~~~l~~~~~ 261 (262)
T 2cmg_A 234 VRYYNEDIHRAAFALPK-NLQEVFKDNIK 261 (262)
T ss_dssp CSSCCHHHHHHTTCCCH-HHHHHGGGTCB
T ss_pred CcEECHHHHHHHcCCCH-HHHHHHHHHhc
Confidence 36788999999999998 56777776654
No 9
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=10.12 E-value=1.1e+02 Score=24.90 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.3
Q ss_pred EEeehhHHHHhHhhcchhhhhHHHHH
Q 030213 145 LWILAPVVLISSLILPQMFLGNVIED 170 (181)
Q Consensus 145 LW~lGP~vLVASfilP~lyLrkVisa 170 (181)
+.+.-|-+..|+|.||. |+++.|+.
T Consensus 278 ~~~y~~~~h~~~f~lp~-~~~~~~~~ 302 (304)
T 2o07_A 278 LKYYNSDVHRAAFVLPE-FARKALND 302 (304)
T ss_dssp CSSCCHHHHHHTTCCCH-HHHHHHHC
T ss_pred CeEECHHHHHHHhcCcH-HHHHHhhc
Confidence 47888999999999999 78887763
No 10
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=7.69 E-value=1.1e+02 Score=24.61 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.4
Q ss_pred EEeehhHHHHhHhhcchhhhhHHHH
Q 030213 145 LWILAPVVLISSLILPQMFLGNVIE 169 (181)
Q Consensus 145 LW~lGP~vLVASfilP~lyLrkVis 169 (181)
+.+.-|-+..|+|+||. |+++.|+
T Consensus 279 ~~~y~~~~~~~~f~~p~-~~~~~~~ 302 (304)
T 3bwc_A 279 LKYYDSEMHKASFALPR-FARHINN 302 (304)
T ss_dssp CSSCCHHHHHHHTCCCG-GGGGGTC
T ss_pred CeEECHHHHHHHcCCCH-HHHHHhc
Confidence 57899999999999999 6777664
Done!