Query 030213
Match_columns 181
No_of_seqs 22 out of 24
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 16:34:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030213.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030213hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 27.1 4.7 0.00034 27.0 -0.7 25 140-164 69-93 (100)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 26.6 5.8 0.00042 26.3 -0.2 26 138-163 58-83 (91)
3 d1v54b2 f.17.2.1 (B:1-90) Mito 25.3 5 0.00036 26.7 -0.8 27 140-166 59-85 (90)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 18.7 8.5 0.00062 26.1 -0.7 25 140-164 75-99 (107)
5 d1xj5a_ c.66.1.17 (A:) Spermid 11.4 39 0.0029 26.0 1.3 24 145-169 267-290 (290)
6 d1jnya1 b.43.3.1 (A:228-322) E 10.8 57 0.0041 21.0 1.8 21 63-83 71-91 (95)
7 d2ds5a1 g.39.1.11 (A:11-48) Cl 9.8 33 0.0024 20.1 0.2 15 118-134 5-19 (38)
8 d1wb1a1 b.43.3.1 (A:180-271) E 7.6 61 0.0045 20.9 0.9 20 64-83 73-92 (92)
9 d1d2ea1 b.43.3.1 (A:251-348) E 7.3 94 0.0069 20.1 1.8 31 53-83 63-95 (98)
10 d1ozba_ d.33.1.1 (A:) Bacteria 7.1 91 0.0067 21.7 1.7 26 150-177 90-117 (144)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=27.14 E-value=4.7 Score=26.96 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=21.1
Q ss_pred CCcceEEeehhHHHHhHhhcchhhh
Q 030213 140 DKGSFLWILAPVVLISSLILPQMFL 164 (181)
Q Consensus 140 ~~~SlLW~lGP~vLVASfilP~lyL 164 (181)
..--++|-+.|++++..+.+|++-+
T Consensus 69 ~~LEiiWTviP~lILi~l~~pS~~~ 93 (100)
T d3dtub2 69 SPLEIAWTIVPIVILVAIGAFSLPV 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999854
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=26.59 E-value=5.8 Score=26.33 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=20.6
Q ss_pred cCCCcceEEeehhHHHHhHhhcchhh
Q 030213 138 QEDKGSFLWILAPVVLISSLILPQMF 163 (181)
Q Consensus 138 ~~~~~SlLW~lGP~vLVASfilP~ly 163 (181)
+-..--+.|-+.|+++++.+-+|.+-
T Consensus 58 ~n~~lEi~WtiIP~iil~~iav~s~~ 83 (91)
T d1fftb2 58 HSNKVEAVVWTVPILIIIFLAVLTWK 83 (91)
T ss_dssp CCSHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCceehhhHHHHHHHHHHHHHHHHHH
Confidence 33445678999999999999988764
No 3
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.32 E-value=5 Score=26.73 Aligned_cols=27 Identities=15% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCcceEEeehhHHHHhHhhcchhhhhH
Q 030213 140 DKGSFLWILAPVVLISSLILPQMFLGN 166 (181)
Q Consensus 140 ~~~SlLW~lGP~vLVASfilP~lyLrk 166 (181)
+.--++|-+.|++.+....+|++-|=-
T Consensus 59 ~~lEiiWTiiP~lILi~ia~PSl~lLY 85 (90)
T d1v54b2 59 QEVETIWTILPAIILILIALPSLRILY 85 (90)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999987643
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=18.72 E-value=8.5 Score=26.08 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=21.0
Q ss_pred CCcceEEeehhHHHHhHhhcchhhh
Q 030213 140 DKGSFLWILAPVVLISSLILPQMFL 164 (181)
Q Consensus 140 ~~~SlLW~lGP~vLVASfilP~lyL 164 (181)
..--++|-+.|++++..+.+|++-+
T Consensus 75 ~~lEi~WTviP~lIL~~laipSl~~ 99 (107)
T d3ehbb2 75 TPIEVIWTLVPVLILVAIGAFSLPI 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999743
No 5
>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.38 E-value=39 Score=25.99 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=19.1
Q ss_pred EEeehhHHHHhHhhcchhhhhHHHH
Q 030213 145 LWILAPVVLISSLILPQMFLGNVIE 169 (181)
Q Consensus 145 LW~lGP~vLVASfilP~lyLrkVis 169 (181)
+-..=|.+..|+|.+|. |++++|+
T Consensus 267 l~yYn~~ih~~~F~lP~-~~~~~l~ 290 (290)
T d1xj5a_ 267 LKFYNAEIHSAAFCLPS-FAKKVIE 290 (290)
T ss_dssp CSSCCHHHHHHTTCCCH-HHHHHHC
T ss_pred CcccCHHHHHHHccCcH-HHHHhhC
Confidence 34567889999999998 7788774
No 6
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.82 E-value=57 Score=20.97 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=17.6
Q ss_pred ccccccccccccceeEeecCC
Q 030213 63 KIEGYSAWSSKRGAILCASNS 83 (181)
Q Consensus 63 ~~~g~s~~s~~r~~~~cssnS 83 (181)
.++|+.....+||-++|..|+
T Consensus 71 ~l~~i~~~~i~rG~vl~~~~~ 91 (95)
T d1jnya1 71 NVRGVEKKDIKRGDVVGHPNN 91 (95)
T ss_dssp EEESSCGGGCCTTCEEECTTS
T ss_pred EEEcCcHHhcCCCCEEECCCc
Confidence 467888888999999998875
No 7
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=9.76 E-value=33 Score=20.15 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=10.1
Q ss_pred EecCCcccccccCcccc
Q 030213 118 SFCGLTHQLVEEGKLMS 134 (181)
Q Consensus 118 SF~~~~~q~~~E~~l~S 134 (181)
||||++.+. -++++.
T Consensus 5 SFCgk~~~e--V~~LI~ 19 (38)
T d2ds5a1 5 SFCGKSQHE--VRKLIA 19 (38)
T ss_dssp TTTCCBTTT--SSCEEE
T ss_pred eCCCCCHHH--HHHHhc
Confidence 899999854 345544
No 8
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]}
Probab=7.60 E-value=61 Score=20.86 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=15.3
Q ss_pred cccccccccccceeEeecCC
Q 030213 64 IEGYSAWSSKRGAILCASNS 83 (181)
Q Consensus 64 ~~g~s~~s~~r~~~~cssnS 83 (181)
++|+.....+||-++|+.+|
T Consensus 73 L~gi~~~~i~rG~vl~~~~s 92 (92)
T d1wb1a1 73 IQGVDAKQIYRGCILTSKDT 92 (92)
T ss_dssp CSSCCSSCCCSSCBCCCTTC
T ss_pred EcCCCHHHcCCcCEEeCCCC
Confidence 46777777889999988764
No 9
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=7.27 E-value=94 Score=20.09 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=20.8
Q ss_pred ccccCCCcc--cccccccccccccceeEeecCC
Q 030213 53 LGNTFPNLK--HKIEGYSAWSSKRGAILCASNS 83 (181)
Q Consensus 53 ~~~~~p~~k--~~~~g~s~~s~~r~~~~cssnS 83 (181)
+.+..|+=+ =.++|+.....+||-++|+-++
T Consensus 63 ~~~a~aG~~v~l~l~gi~~~~i~rG~vl~~p~~ 95 (98)
T d1d2ea1 63 LDRAEAGDNLGALVRGLKREDLRRGLVMAKPGS 95 (98)
T ss_dssp ESEEETTCEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred eccCCCCCEEEEEEcCCCHHHccCccEEeCCCC
Confidence 344445432 2357888888999999997654
No 10
>d1ozba_ d.33.1.1 (A:) Bacterial protein-export protein SecB {Haemophilus influenzae [TaxId: 727]}
Probab=7.12 E-value=91 Score=21.71 Aligned_cols=26 Identities=4% Similarity=0.410 Sum_probs=18.6
Q ss_pred hHHHH--hHhhcchhhhhHHHHHHhccccc
Q 030213 150 PVVLI--SSLILPQMFLGNVIEDFIKDNLL 177 (181)
Q Consensus 150 P~vLV--ASfilP~lyLrkVisavfeDSlL 177 (181)
+++|| ..++|| |+|++|+.++.++=.
T Consensus 90 ~illi~~P~~lFP--~~R~ii~~l~~~gGF 117 (144)
T d1ozba_ 90 HCLTSQCPNMLFP--YARELVSNLVNRGTF 117 (144)
T ss_dssp HHHHTHHHHHHHH--HHHHHHHHHHHHTTC
T ss_pred hhHhhcCcHHHHH--HHHHHHHHHHHhcCC
Confidence 44444 347788 899999999887643
Done!