BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030214
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 7/130 (5%)
Query: 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQ 72
KT + + +GDI++ VD IV+ N L GG AIH AAGP L AC ++ + Q
Sbjct: 2 KTRIHVVQGDITKLAVD----VIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQ 57
Query: 73 PRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPED-ILRSAYKNCLSVGKANNIQY 131
CP G A IT LP V+HTVGPV+ ED +L+ AY N L + AN+
Sbjct: 58 G--DCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTS 115
Query: 132 IAFPAISCGV 141
+AFPAIS GV
Sbjct: 116 VAFPAISTGV 125
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
L + +GD++R VD +V+ +NE L G AAA+ +AAGP+LQ C QI + + R+
Sbjct: 39 LIVQQGDLARLPVD----VVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRL 94
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIA 133
PG A I+ KLP HVIH VGP ++ + P +LR A + L + + + IA
Sbjct: 95 L--PGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIA 152
Query: 134 FPAISCGV 141
PAIS GV
Sbjct: 153 IPAISSGV 160
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 33 DAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92
DAIV+ N LL GG IH AAGP L C + C G+A+IT G++LP
Sbjct: 77 DAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQS------CKTGKAKITGGYRLPA 130
Query: 93 SHVIHTVGPVFNFHCNPEDI--LRSAYKNCLSVGKANNIQYIAFPAISCGV 141
+VIHTVGP+ + LRS Y + L + + ++ +AFP IS GV
Sbjct: 131 KYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGV 181
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
+++ +GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++
Sbjct: 4 IRVVQGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKI 55
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135
R GEA +T LPV +VIH V + +R A K+ L ++ +AFP
Sbjct: 56 RV--GEAAVTGAGNLPVRYVIHAA--VLGDEPASLETVRKATKSALEKAVELGLKTVAFP 111
Query: 136 AISCGVSQIMTHAI 149
+ GV + A+
Sbjct: 112 LLGTGVGGLPVEAV 125
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 5 VQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKA 64
+ T S L++ + DI+ +D SDA+V PTN +GG + + + G + +A
Sbjct: 10 LSTKSLFLGQKLQVVQADIA--SID--SDAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEA 65
Query: 65 CYQIPEAQPRVRCPPGE---ARITPGFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNC 120
++ R + P E A ++ G LP VIH PV+ C E++L KNC
Sbjct: 66 VLEL-----RKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGSDKC--EELLEKTVKNC 118
Query: 121 LSVGKANNIQYIAFPAISCG 140
L++ ++ IAFP+I G
Sbjct: 119 LALADDRKLKSIAFPSIGSG 138
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
L++ + DI+ +D SDA+V PTN +GG + + G + +A ++ R
Sbjct: 39 LQVVQADIA--SID--SDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVLEL-----RK 89
Query: 76 RCPPGE---ARITPGFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQY 131
+ P E A ++ G LP VIH PV+ C E++L KNCL++ ++
Sbjct: 90 KNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKS 147
Query: 132 IAFPAISCG 140
IAFP+I G
Sbjct: 148 IAFPSIGSG 156
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase
Osh55, Northeast Structural Genomics Consortium Target
Or130
Length = 167
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 139
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 140 GVSQIMTHAI 149
V + A+
Sbjct: 116 WVGGLPAEAV 125
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED
SERINE Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or187
Length = 167
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 139
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHAA--VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 140 GVSQIMTHAI 149
V + A+
Sbjct: 116 WVGGLPAEAV 125
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
pdb|4ETK|B Chain B, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
Length = 167
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
++ +GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++
Sbjct: 4 IRAVQGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKI 55
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135
R GEA +T LPV +VIH V + +R A K+ L ++ +AF
Sbjct: 56 RV--GEAAVTGAGNLPVRYVIHAA--VLGDEPASLETVRKATKSALEKAVELGLKTVAFT 111
Query: 136 AISCGVSQIMTHAI 149
A+ V + A+
Sbjct: 112 ALGAWVGGLPAEAV 125
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|B Chain B, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|C Chain C, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|D Chain D, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
Length = 167
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 139
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHAA--VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 140 GVSQIMTHAI 149
V + A+
Sbjct: 116 WVGGLPAEAV 125
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed
Serine Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or185
Length = 167
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 139
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 140 GVSQIMTHAI 149
V + A+
Sbjct: 116 WVGGLPAEAV 125
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + + E
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGK 125
R GE +TP L + +V HTVGP+ + + E + L A+ L +
Sbjct: 69 QFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAE 128
Query: 126 ANNIQYIAFPAISCGV 141
++ IAFPA+S G+
Sbjct: 129 EMGVESIAFPAVSAGI 144
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + + E
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGK 125
R GE +TP L + +V HTVGP+ + + E + L A+ L +
Sbjct: 69 QFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAE 128
Query: 126 ANNIQYIAFPAISCGV 141
++ IAFPA+S G+
Sbjct: 129 EMGVESIAFPAVSAGI 144
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + + E
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGK 125
R GE +TP L + +V HTVGP+ + + E + L A+ L +
Sbjct: 69 QFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAE 128
Query: 126 ANNIQYIAFPAISCGV 141
++ IAFPA+S G+
Sbjct: 129 EMGVESIAFPAVSAGI 144
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase
Length = 211
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + E
Sbjct: 22 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAXRE 77
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGK 125
R GE +TP L + +V HTVGP+ + + E + L A+ L +
Sbjct: 78 QFGRDYIDHGEVVVTPAXNLEERGIKYVFHTVGPICSGXWSEELKEKLYKAFLGPLEKAE 137
Query: 126 ANNIQYIAFPAISCGV 141
++ IAFPA+S G+
Sbjct: 138 EXGVESIAFPAVSAGI 153
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 33 DAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGE---ARITPGFK 89
+AI++PTN + L + + G + +A ++ R + P E A ++ G
Sbjct: 55 EAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLEL-----RKKNGPLEVAGAAVSAGHG 109
Query: 90 LPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCG 140
LP VIH PV+ C E++L KNCL++ ++ IAFP+I G
Sbjct: 110 LPAKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKSIAFPSIGSG 159
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 41 EILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVG 100
+++L G + ++ E AGP+LQ+ + + V G T + L +V+H V
Sbjct: 63 DLVLSRGPLSKSLLEKAGPELQEELDTVGQG---VAVSMGTVLKTSSWNLDCRYVLHVVA 119
Query: 101 PVF-NFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLE 159
P + N + I+ + C+ + ++ +++ IAFPAI G N GF +
Sbjct: 120 PEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTG-------------NLGFPK 166
Query: 160 SFWVEL 165
+ + EL
Sbjct: 167 NIFAEL 172
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 95 VIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQ 152
VIH VGP F H E +L++AY + +NI+ +A P +S G+ +++
Sbjct: 407 VIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKDRLEVS 466
Query: 153 TNCGFLESFWVELSAKVTTYDMD 175
NC L + A VT Y +D
Sbjct: 467 LNC--LTTALDRTDADVTIYCLD 487
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 80 GEARITPGFKLPVSHVIHTVGPVFN--FHCNPEDILRSAYKNCLSVGKANNIQYIAFPAI 137
G+AR+ G H+IH VGP FN + L AY++ + NN + +A P +
Sbjct: 55 GKARLVKG---AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLL 111
Query: 138 SCGV 141
S G+
Sbjct: 112 STGI 115
>pdb|3EWO|A Chain A, Ibv Nsp3 Adrp Domain
pdb|3EWO|B Chain B, Ibv Nsp3 Adrp Domain
pdb|3EWP|A Chain A, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
pdb|3EWP|B Chain B, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
Length = 177
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 35 IVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94
IV+ NE + GG A AI + GPD + C A + P + +TP F +
Sbjct: 40 IVNAANEHMSHGGGVAKAIADFCGPDFVEYC-----ADYVKKHGPQQKLVTPSFVKGIQC 94
Query: 95 VIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV 141
V + VGP N + L +AYK+ L G N + P +S G+
Sbjct: 95 VNNVVGPRHG-DSNLREKLVAAYKSVLVGGVVNYV----VPVLSSGI 136
>pdb|2XD7|A Chain A, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|B Chain B, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|C Chain C, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|D Chain D, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
Length = 193
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
L +++ DIS R + IV PT + L A+ +A G + + ++ ++Q +
Sbjct: 21 LSLTQSDISHIGSMRV-EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPL 79
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135
EA ++ L VIH P + E+ L KNCLS + ++ +AFP
Sbjct: 80 EV--AEAAVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFP 136
Query: 136 AISCG 140
G
Sbjct: 137 PFPSG 141
>pdb|2VRI|A Chain A, Structure Of The Nsp3 X-Domain Of Human Coronavirus Nl63
Length = 174
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 12/135 (8%)
Query: 7 TLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACY 66
T F+ ++K GDIS S D +V+ NE LL GG A AI LQ
Sbjct: 10 TKPFAVYKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSK 69
Query: 67 QIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKA 126
+ ++ G F +V + VGP H +L AY + L
Sbjct: 70 DYISSNGPLKVGAGVMLECEKF-----NVFNVVGPRTGKH--EHSLLVEAYNSILF---E 119
Query: 127 NNIQYIAFPAISCGV 141
N I + P +SCG+
Sbjct: 120 NGIPLM--PLLSCGI 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,219,571
Number of Sequences: 62578
Number of extensions: 201699
Number of successful extensions: 422
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 26
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)