Query 030214
Match_columns 181
No_of_seqs 114 out of 1045
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 2.8E-46 6E-51 291.3 16.8 160 7-174 11-185 (186)
2 cd02907 Macro_Af1521_BAL_like 100.0 2.5E-43 5.5E-48 273.6 18.0 160 13-179 1-174 (175)
3 cd02908 Macro_Appr_pase_like M 100.0 6.5E-43 1.4E-47 269.0 17.2 153 15-178 1-165 (165)
4 PRK00431 RNase III inhibitor; 100.0 3.2E-42 6.9E-47 267.8 17.5 160 13-179 2-173 (177)
5 PRK04143 hypothetical protein; 100.0 2.7E-42 5.9E-47 281.7 17.4 163 11-179 80-261 (264)
6 cd02905 Macro_GDAP2_like Macro 100.0 7.1E-42 1.5E-46 256.5 14.5 128 15-153 2-139 (140)
7 COG2110 Predicted phosphatase 100.0 6.4E-40 1.4E-44 253.5 16.3 164 13-181 2-176 (179)
8 cd02906 Macro_1 Macro domain, 100.0 9.8E-39 2.1E-43 241.5 13.2 125 15-144 1-133 (147)
9 cd02903 Macro_BAL_like Macro d 100.0 1.2E-37 2.6E-42 233.0 14.5 127 14-153 1-137 (137)
10 cd03330 Macro_2 Macro domain, 100.0 2.2E-33 4.8E-38 208.7 14.3 119 15-144 1-119 (133)
11 cd02900 Macro_Appr_pase Macro 100.0 6.6E-30 1.4E-34 199.6 14.1 139 14-153 19-185 (186)
12 smart00506 A1pp Appr-1"-p proc 100.0 2E-29 4.2E-34 186.3 13.7 125 15-147 1-127 (133)
13 KOG2633 Hismacro and SEC14 dom 100.0 1.4E-29 3E-34 197.2 12.4 159 2-177 21-193 (200)
14 cd02749 Macro Macro domain, a 100.0 7.6E-29 1.6E-33 186.3 13.3 123 15-144 1-127 (147)
15 PF01661 Macro: Macro domain; 99.9 3.4E-27 7.4E-32 170.6 10.4 111 36-148 1-113 (118)
16 PRK13341 recombination factor 99.9 2.6E-27 5.7E-32 216.8 -2.3 164 11-180 472-705 (725)
17 cd02901 Macro_Poa1p_like Macro 99.9 6.6E-22 1.4E-26 147.9 13.5 121 15-147 1-127 (140)
18 PHA02595 tk.4 hypothetical pro 99.8 1.1E-17 2.4E-22 127.3 15.6 145 15-167 2-153 (154)
19 PF14519 Macro_2: Macro-like d 99.0 3.5E-09 7.6E-14 86.8 10.6 133 14-150 42-211 (280)
20 cd03331 Macro_Poa1p_like_SNF2 98.8 1.5E-07 3.2E-12 71.5 13.0 124 16-144 2-136 (152)
21 PF10154 DUF2362: Uncharacteri 97.2 0.012 2.7E-07 52.6 14.0 140 33-173 291-491 (510)
22 TIGR02452 conserved hypothetic 97.0 0.0036 7.8E-08 51.7 7.9 155 13-168 55-255 (266)
23 COG4295 Uncharacterized protei 94.1 0.33 7.1E-06 39.1 7.6 69 110-178 199-279 (285)
24 PHA03033 hypothetical protein; 92.0 0.61 1.3E-05 34.2 5.9 81 15-107 2-83 (142)
25 PHA00684 hypothetical protein 77.9 23 0.0005 26.0 7.8 94 34-150 2-95 (128)
26 KOG1502 Flavonol reductase/cin 61.3 21 0.00045 30.5 5.3 44 91-134 78-126 (327)
27 KOG4506 Uncharacterized conser 60.3 13 0.00028 32.6 3.9 62 77-138 417-481 (598)
28 PF01073 3Beta_HSD: 3-beta hyd 59.2 31 0.00066 28.4 6.0 44 91-134 66-113 (280)
29 PLN02214 cinnamoyl-CoA reducta 55.5 22 0.00047 29.9 4.6 40 92-134 82-124 (342)
30 PLN02657 3,8-divinyl protochlo 46.5 52 0.0011 28.4 5.6 44 91-134 136-179 (390)
31 PF12147 Methyltransf_20: Puta 46.5 69 0.0015 27.2 6.0 67 110-178 116-182 (311)
32 CHL00194 ycf39 Ycf39; Provisio 46.4 54 0.0012 27.1 5.5 43 92-134 65-107 (317)
33 PF13460 NAD_binding_10: NADH( 44.3 40 0.00086 25.0 4.1 36 91-134 60-95 (183)
34 PRK15181 Vi polysaccharide bio 43.1 48 0.001 27.8 4.8 45 92-136 91-140 (348)
35 COG2388 Predicted acetyltransf 40.6 42 0.00092 23.5 3.4 41 93-136 40-80 (99)
36 PRK07475 hypothetical protein; 38.2 1.6E+02 0.0035 23.7 7.0 96 76-179 26-142 (245)
37 PLN02662 cinnamyl-alcohol dehy 37.9 1.1E+02 0.0024 24.8 6.1 43 92-134 77-124 (322)
38 PTZ00325 malate dehydrogenase; 37.1 1E+02 0.0022 26.1 5.8 44 91-134 76-122 (321)
39 PLN02778 3,5-epimerase/4-reduc 35.4 69 0.0015 26.4 4.5 44 91-134 57-108 (298)
40 PLN02725 GDP-4-keto-6-deoxyman 30.0 1E+02 0.0022 24.7 4.6 43 91-134 49-98 (306)
41 PLN02986 cinnamyl-alcohol dehy 28.2 1.7E+02 0.0037 23.9 5.7 43 92-134 78-125 (322)
42 PF06908 DUF1273: Protein of u 27.6 1.7E+02 0.0037 22.6 5.2 33 108-144 22-54 (177)
43 PF05185 PRMT5: PRMT5 arginine 23.6 48 0.001 29.5 1.6 27 13-39 240-266 (448)
44 PF12683 DUF3798: Protein of u 23.5 1E+02 0.0022 25.7 3.4 94 80-178 119-221 (275)
45 COG0451 WcaG Nucleoside-diphos 23.2 1.6E+02 0.0035 23.5 4.6 43 93-135 66-114 (314)
46 PF12683 DUF3798: Protein of u 22.9 1.8E+02 0.0039 24.3 4.7 52 94-154 33-86 (275)
47 PF03602 Cons_hypoth95: Conser 21.4 3.8E+02 0.0082 20.5 6.1 65 108-179 23-87 (183)
48 TIGR02197 heptose_epim ADP-L-g 21.4 1.6E+02 0.0036 23.6 4.3 43 91-134 66-111 (314)
49 PF09039 HTH_Tnp_Mu_2: Mu DNA 20.3 61 0.0013 23.0 1.3 27 111-140 49-75 (108)
50 COG3623 SgaU Putative L-xylulo 20.3 1.7E+02 0.0036 24.2 3.9 39 97-135 78-116 (287)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=2.8e-46 Score=291.35 Aligned_cols=160 Identities=23% Similarity=0.353 Sum_probs=146.6
Q ss_pred eEEecCCcEEEEEeccc--eeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEE
Q 030214 7 TLSFSTKTSLKISKGDI--SRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARI 84 (181)
Q Consensus 7 ~~~~~~~~~i~i~~GdI--~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~ 84 (181)
++++..|.+|.|++||| +++++ |+|||+||++|.+++|+++||+++||+++++||+++.+. .+++++|++++
T Consensus 11 ~~~~~~~~~i~i~~gDI~~t~~~v----DaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~~~i 84 (186)
T cd02904 11 TKSLFLGQKLSLVQSDISIGSIDV----EGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKS--NGPLEIAGAAV 84 (186)
T ss_pred chhhcCCCEEEEEECCccccceec----cEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHh--cCCCCCCCEEE
Confidence 45677899999999999 98877 999999999999999999999999999999999987643 35899999999
Q ss_pred ecCCCCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc--
Q 030214 85 TPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN-- 154 (181)
Q Consensus 85 t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~-- 154 (181)
|++|+|+||||||+|+|.|+.+ .+++.|++||++||++|++++++|||||+||||++|| |+++|+ +|.
T Consensus 85 T~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~-~~l~~ 162 (186)
T cd02904 85 SQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAIS-SYFVS 162 (186)
T ss_pred ccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH-HHHHh
Confidence 9999999999999999999765 4678999999999999999999999999999999999 888998 884
Q ss_pred ---CCCceEEEEEeCcchHHHHH
Q 030214 155 ---CGFLESFWVELSAKVTTYDM 174 (181)
Q Consensus 155 ---~~l~~V~~v~~~~~~~~~~~ 174 (181)
+++++|+||+|+++.++.|.
T Consensus 163 ~~~~~l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 163 TMSSSIKQIYFVLFDSESIGIYV 185 (186)
T ss_pred cCCCCccEEEEEECCHHHHHHhh
Confidence 35889999999999999984
No 2
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=2.5e-43 Score=273.59 Aligned_cols=160 Identities=33% Similarity=0.422 Sum_probs=148.3
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCC
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~ 92 (181)
|.+|++++|||+++++ |+||||+|+++.+++|++++|++++|+++++||++..+. .+++++|++++|++|+|+|
T Consensus 1 ~~~i~i~~GdI~~~~~----DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~--~g~~~~G~~~~T~~~~L~~ 74 (175)
T cd02907 1 GVTLSVIKGDITRFPV----DAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRK--NGPVPTGEVVVTSAGKLPC 74 (175)
T ss_pred CcEEEEEECCcceeec----CEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHh--cCCCCCCcEEEecCCCCCC
Confidence 5789999999999977 999999999999999999999999999999999987643 3589999999999999999
Q ss_pred ceEEEeeCCccCCCC--ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc----CCCc
Q 030214 93 SHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN----CGFL 158 (181)
Q Consensus 93 k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~----~~l~ 158 (181)
|||||+++|.|++++ ++.+.|++||++||+.|.+++++|||||+||||.+|+ |+++++ +|. +.++
T Consensus 75 k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~-~fl~~~~~~l~ 153 (175)
T cd02907 75 KYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVK-EFLETKGSALK 153 (175)
T ss_pred CEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH-HHHHhcCCCcc
Confidence 999999999999874 5688999999999999999999999999999999999 788888 773 4588
Q ss_pred eEEEEEeCcchHHHHHHHHHh
Q 030214 159 ESFWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 159 ~V~~v~~~~~~~~~~~~~~~~ 179 (181)
+|+||+++++.+++|++.|+|
T Consensus 154 ~I~~v~~~~~~~~~~~~al~~ 174 (175)
T cd02907 154 EIYLVDYDEQTVEAFEKALEV 174 (175)
T ss_pred EEEEEECCHHHHHHHHHHHhh
Confidence 999999999999999999987
No 3
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=6.5e-43 Score=268.99 Aligned_cols=153 Identities=39% Similarity=0.605 Sum_probs=142.9
Q ss_pred EEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCCce
Q 030214 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (181)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~k~ 94 (181)
+|+|++|||+++++ |+|||++|+++.++||++++|++++|+++++||++.. ++++|++++|++|+|+|+|
T Consensus 1 ~i~i~~GdI~~~~~----daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~------~~~~G~~v~T~~~~l~~~~ 70 (165)
T cd02908 1 KIEIIQGDITKLEV----DAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELR------GCPTGEAVITSGYNLPAKY 70 (165)
T ss_pred CeEEEecccceeec----CEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCCEEEeeCCCCCCCE
Confidence 48899999999977 9999999999999999999999999999999999886 6799999999999999999
Q ss_pred EEEeeCCccCCCC-ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc---CCCceEEE
Q 030214 95 VIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN---CGFLESFW 162 (181)
Q Consensus 95 IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~---~~l~~V~~ 162 (181)
|||+++|.|+++. ++.+.|++||++||+.|++++++|||||+||||.+|+ |+++++ +|. +.+++|+|
T Consensus 71 IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~-~fl~~~~~l~~V~~ 149 (165)
T cd02908 71 VIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVR-EFLEEHDAIERVIF 149 (165)
T ss_pred EEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHH-HHHhcCCCCCEEEE
Confidence 9999999998763 6789999999999999999999999999999999999 788888 885 46899999
Q ss_pred EEeCcchHHHHHHHHH
Q 030214 163 VELSAKVTTYDMDLIE 178 (181)
Q Consensus 163 v~~~~~~~~~~~~~~~ 178 (181)
|+++++++..|++.|+
T Consensus 150 v~~~~~~~~~f~~~l~ 165 (165)
T cd02908 150 VCFSEEDYEIYEKALS 165 (165)
T ss_pred EeCCHHHHHHHHHHhC
Confidence 9999999999999863
No 4
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=3.2e-42 Score=267.80 Aligned_cols=160 Identities=36% Similarity=0.537 Sum_probs=148.1
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCC
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~ 92 (181)
|.+|+|++|||+++++ |+||||+|+.+.+++|++++|++++|++++++|+++.+.+ +++++|++++|++++|++
T Consensus 2 ~~~i~i~~Gdi~~~~~----daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~~--~~l~~G~~~~T~~~~l~~ 75 (177)
T PRK00431 2 GMRIEVVQGDITELEV----DAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQ--GPCPTGEAVITSAGRLPA 75 (177)
T ss_pred CcEEEEEeCCcccccC----CEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCeEEEecCCCCCC
Confidence 6789999999999876 9999999999999999999999999999999999886433 589999999999999999
Q ss_pred ceEEEeeCCccCCCC-ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc---CCCceE
Q 030214 93 SHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN---CGFLES 160 (181)
Q Consensus 93 k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~---~~l~~V 160 (181)
+||||+|+|.|+.+. .+.+.|++||++||+.|++++++|||||+||||++|+ |+++++ +|. +.+++|
T Consensus 76 ~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~-~f~~~~~~l~~I 154 (177)
T PRK00431 76 KYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVR-EFLTRHKSPEEV 154 (177)
T ss_pred CEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHH-HHHhcCCCcCEE
Confidence 999999999999865 4688999999999999999999999999999999999 788888 883 458899
Q ss_pred EEEEeCcchHHHHHHHHHh
Q 030214 161 FWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 161 ~~v~~~~~~~~~~~~~~~~ 179 (181)
+||+++++.++.|++.|+.
T Consensus 155 ~~v~~~~~~~~~f~~~l~~ 173 (177)
T PRK00431 155 YFVCYDEEAYRLYERLLTQ 173 (177)
T ss_pred EEEECCHHHHHHHHHHHHH
Confidence 9999999999999999874
No 5
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=281.72 Aligned_cols=163 Identities=29% Similarity=0.403 Sum_probs=146.3
Q ss_pred cCCcEEEEEeccceeeccCCCCcEEEEccCCCCCC-----CchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEe
Q 030214 11 STKTSLKISKGDISRWCVDRSSDAIVSPTNEILLL-----GGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARIT 85 (181)
Q Consensus 11 ~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~-----~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t 85 (181)
..+.+|.|++|||+++++ |||||+||+.|.+ +||++++|++++|++|+++|+++.+.+ ++.+++|++++|
T Consensus 80 ~~~~~i~i~~GDIt~l~v----DAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~-g~~~~~G~a~iT 154 (264)
T PRK04143 80 IKYDNIFLWQGDITRLKV----DAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQ-GRKEATGQAKIT 154 (264)
T ss_pred cCCCEEEEEECCcceeec----CEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHc-CCCCCCceEEEe
Confidence 357899999999999977 9999999999975 489999999999999999999887544 346899999999
Q ss_pred cCCCCCCceEEEeeCCccCCCC---ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc
Q 030214 86 PGFKLPVSHVIHTVGPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN 154 (181)
Q Consensus 86 ~~~~L~~k~IiH~v~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~ 154 (181)
++|+|+|+||||+|||.|+.+. .+.+.|++||++||+.|.+++++|||||+||||.||| |+++++ +|.
T Consensus 155 ~~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~-~fl 233 (264)
T PRK04143 155 RAYNLPAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVL-SWL 233 (264)
T ss_pred cCCCCCCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHH-HHH
Confidence 9999999999999999998842 5678999999999999999999999999999999999 888998 884
Q ss_pred C---CCceEEEEEeCcchHHHHHHHHHh
Q 030214 155 C---GFLESFWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 155 ~---~l~~V~~v~~~~~~~~~~~~~~~~ 179 (181)
. +..+|.|++|+++++++|++.++.
T Consensus 234 ~~~~~~~~Vif~vf~~~d~~iy~~~l~~ 261 (264)
T PRK04143 234 KENPSKLKVVFNVFTDEDLELYQKALNK 261 (264)
T ss_pred HhCCCCCEEEEEEcCHHHHHHHHHHHHH
Confidence 2 236899999999999999998864
No 6
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=7.1e-42 Score=256.53 Aligned_cols=128 Identities=33% Similarity=0.519 Sum_probs=120.7
Q ss_pred EEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCCce
Q 030214 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (181)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~k~ 94 (181)
+|.+++|||+++++ |||||++|+++.+++|++++|++++|++|++||++.. ++++|++++|++|+|+|+|
T Consensus 2 ki~l~~GdIt~~~v----DaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~------~~~~G~~~~T~~~~L~~k~ 71 (140)
T cd02905 2 RIVLWEGDICNLNV----DAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLG------GCRTGEAKLTKGYNLPARF 71 (140)
T ss_pred eEEEEeCccCcccC----CEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCcEEEecCCCCCccE
Confidence 58899999999977 9999999999999999999999999999999998875 7999999999999999999
Q ss_pred EEEeeCCccCCCC--ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhh
Q 030214 95 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQT 153 (181)
Q Consensus 95 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f 153 (181)
|||+|+|.|++++ .+++.|++||++||+.|++++++|||||+||||.+|| |+++++ +|
T Consensus 72 VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~-~~ 139 (140)
T cd02905 72 IIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVR-RF 139 (140)
T ss_pred EEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH-Hh
Confidence 9999999999875 3578999999999999999999999999999999999 788888 77
No 7
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=6.4e-40 Score=253.50 Aligned_cols=164 Identities=36% Similarity=0.534 Sum_probs=151.5
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCC
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~ 92 (181)
...|.+++|||++.++ |+|||+||+.+.+||||+.||++++|++++++|++...++++.+.++|++++|++++|++
T Consensus 2 ~~~i~~v~GDIt~~~~----daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a 77 (179)
T COG2110 2 MTNIRVVQGDITKLEA----DAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPA 77 (179)
T ss_pred CceEEEEecccceeeh----hheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCC
Confidence 3578999999999987 999999999999999999999999999999999998866666678899999999999999
Q ss_pred ceEEEeeCCccCCCC-ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhcC--CCceEE
Q 030214 93 SHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTNC--GFLESF 161 (181)
Q Consensus 93 k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~~--~l~~V~ 161 (181)
+||||+++|.|..+. ...+.|+.||+++|++|.+++++|||||+||||.+|+ ++++++ .|.. .+++|.
T Consensus 78 ~~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~-~~~~~~~~~~v~ 156 (179)
T COG2110 78 KYVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVK-DFLPEASIETVI 156 (179)
T ss_pred CEEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHH-HhcccccccEEE
Confidence 999999999999876 5678999999999999999999999999999999999 778888 8874 689999
Q ss_pred EEEeCcchHHHHHHHHHhhC
Q 030214 162 WVELSAKVTTYDMDLIETAL 181 (181)
Q Consensus 162 ~v~~~~~~~~~~~~~~~~~~ 181 (181)
|++|+++.+..|...+.+.+
T Consensus 157 ~v~~~~e~~~~~~~~~~~~~ 176 (179)
T COG2110 157 FVVYGEETARVYEELLSTHL 176 (179)
T ss_pred EEecCchhHHHHHHHHhhhc
Confidence 99999999999999987753
No 8
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=9.8e-39 Score=241.48 Aligned_cols=125 Identities=38% Similarity=0.627 Sum_probs=114.6
Q ss_pred EEEEEeccceeeccCCCCcEEEEccCCCCCC-----CchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCC
Q 030214 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLL-----GGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFK 89 (181)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~-----~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~ 89 (181)
+|.+++|||+++++ |+|||++|+++.+ ++|++++|++++|+++++||+++.+. .++.+++|++++|++++
T Consensus 1 ~i~v~~GdIt~~~~----DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~-~g~~~~~G~a~~T~~~~ 75 (147)
T cd02906 1 SIYLWKGDITTLKV----DAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTK-QGREEPTGQAKITPGYN 75 (147)
T ss_pred CeEEEECCcCCccC----CEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHh-cCCCCCCCeEEEEeCCC
Confidence 47899999999976 9999999999974 48999999999999999999988743 33478999999999999
Q ss_pred CCCceEEEeeCCccCCCC---ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH
Q 030214 90 LPVSHVIHTVGPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI 144 (181)
Q Consensus 90 L~~k~IiH~v~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~ 144 (181)
|+|+||||+++|.|+.+. ++.+.|++||++||+.|.+++++|||||+||||++||
T Consensus 76 L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~ 133 (147)
T cd02906 76 LPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGF 133 (147)
T ss_pred CCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCC
Confidence 999999999999998764 4678999999999999999999999999999999999
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=1.2e-37 Score=233.03 Aligned_cols=127 Identities=31% Similarity=0.400 Sum_probs=116.4
Q ss_pred cEEEEEeccceeeccCCCCcEEEEccCCC-CCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCC-CCcEEEecCCCCC
Q 030214 14 TSLKISKGDISRWCVDRSSDAIVSPTNEI-LLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCP-PGEARITPGFKLP 91 (181)
Q Consensus 14 ~~i~i~~GdI~~~~~~~~~DaIVn~an~~-l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~-~G~~~~t~~~~L~ 91 (181)
.+|++++|||+++++ |||||++|++ +.+++|++++|++++|++++++|++.. .++ .|++++|++|+|+
T Consensus 1 ~~i~i~~GdI~~~~~----DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~------~~~~~G~~~vT~~~~L~ 70 (137)
T cd02903 1 LTLQVAKGDIEDETT----DVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAK------LGQTVGSVIVTKGGNLP 70 (137)
T ss_pred CEEEEEeCccCCccC----CEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHc------CCCCCCeEEEecCCCCC
Confidence 368999999999976 9999999999 788999999999999999999999886 333 6999999999999
Q ss_pred CceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhh
Q 030214 92 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQT 153 (181)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f 153 (181)
||||||+++|.|..+ +.+.|++||++||+.|++++++|||||+||||.+|+ |+++++ +|
T Consensus 71 ~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~-~f 137 (137)
T cd02903 71 CKYVYHVVLPNWSNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVF-KF 137 (137)
T ss_pred CCEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHH-hC
Confidence 999999999999875 678999999999999999999999999999999999 677776 55
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=100.00 E-value=2.2e-33 Score=208.69 Aligned_cols=119 Identities=33% Similarity=0.449 Sum_probs=111.0
Q ss_pred EEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCCce
Q 030214 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (181)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~k~ 94 (181)
.|++++|||+++++ |+|||++|+.+.+++|++++|++++|++++++|++.. ++++|++++|++++|++||
T Consensus 1 ~i~i~~GdI~~~~~----DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~------~~~~G~~~~t~~~~l~~k~ 70 (133)
T cd03330 1 ELEVVQGDITKVDA----DAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKA------PIPVGEAVITGAGDLPARY 70 (133)
T ss_pred CEEEEEcccccccC----CEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcC------CCCCCeEEEEeCCCCCCCE
Confidence 37899999999976 9999999999999999999999999999999998753 7889999999999999999
Q ss_pred EEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH
Q 030214 95 VIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI 144 (181)
Q Consensus 95 IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~ 144 (181)
|||+++|.+.. ..+.+.|++||++||+.|++++++|||||+||||.+|+
T Consensus 71 Iih~~~~~~~~-~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~ 119 (133)
T cd03330 71 VIHAATMEEPG-RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGL 119 (133)
T ss_pred EEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCC
Confidence 99999997655 45678999999999999999999999999999999999
No 11
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.97 E-value=6.6e-30 Score=199.56 Aligned_cols=139 Identities=21% Similarity=0.165 Sum_probs=116.1
Q ss_pred cEEEEEeccceeecc------CCCCcEEEEccCCCCCCCchHHHHHHHHhC-hhHHHHHhhccccCCCCCCCCCcEEEec
Q 030214 14 TSLKISKGDISRWCV------DRSSDAIVSPTNEILLLGGFTAAAIHEAAG-PDLQKACYQIPEAQPRVRCPPGEARITP 86 (181)
Q Consensus 14 ~~i~i~~GdI~~~~~------~~~~DaIVn~an~~l~~~~gv~~ai~~~~G-~~l~~e~~~~~~~~~~~~l~~G~~~~t~ 86 (181)
..+.+++|++++.+. .+++|+||||||+.+.++||++.||++++| ++++++|++....+..+.+++|++++|+
T Consensus 19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~ 98 (186)
T cd02900 19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVP 98 (186)
T ss_pred CCeEEEeCCceecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEec
Confidence 447778888887662 123699999999999999999999999999 6899999876543345689999999999
Q ss_pred CCCCC----------CceEEEeeCCccC-CCCChHHHHHHHHHHHHHHHHhC--CCcEEEecccccchhHH--------H
Q 030214 87 GFKLP----------VSHVIHTVGPVFN-FHCNPEDILRSAYKNCLSVGKAN--NIQYIAFPAISCGVSQI--------M 145 (181)
Q Consensus 87 ~~~L~----------~k~IiH~v~P~~~-~~~~~~~~L~~~~~~~L~~a~~~--~~~sIa~P~l~tG~~g~--------~ 145 (181)
+++|+ ++||||++++.+. ....+.+.+++||+++|++|+++ +++|||||+||||.+|+ |
T Consensus 99 ~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m 178 (186)
T cd02900 99 LGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQM 178 (186)
T ss_pred CCCCccccccccccCCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHH
Confidence 99999 9999999876554 22246789999999999999887 89999999999999999 5
Q ss_pred HHHHhhhh
Q 030214 146 THAIKLQT 153 (181)
Q Consensus 146 ~~~i~~~f 153 (181)
+.+++ +|
T Consensus 179 ~~ai~-~f 185 (186)
T cd02900 179 AFAIR-LF 185 (186)
T ss_pred HHHHH-Hh
Confidence 66665 54
No 12
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.97 E-value=2e-29 Score=186.28 Aligned_cols=125 Identities=38% Similarity=0.529 Sum_probs=112.0
Q ss_pred EEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhH-HHHHhhccccCCCCCCCCCcEEEecCCCCCCc
Q 030214 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDL-QKACYQIPEAQPRVRCPPGEARITPGFKLPVS 93 (181)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l-~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~k 93 (181)
.|++++|||++.++ |+|||++|+++.+++|++++|++++|+++ ++++++.. ++.+++|++++|++++++++
T Consensus 1 ~i~~~~Gdi~~~~~----d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~ 72 (133)
T smart00506 1 ILKVVKGDITKPRA----DAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLA----GGECPVGTAVVTEGGNLPAK 72 (133)
T ss_pred CeEEEeCCCCcccC----CEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhc----CCCcCCccEEEecCCCCCCC
Confidence 37899999999876 99999999999999999999999999996 55555432 23789999999999999999
Q ss_pred eEEEeeCCccCCC-CChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHHHHH
Q 030214 94 HVIHTVGPVFNFH-CNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTH 147 (181)
Q Consensus 94 ~IiH~v~P~~~~~-~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~~~~ 147 (181)
+|+|+++|+|.++ ..+.+.|++||++||+.|.+++++||+||+||||++|+..+
T Consensus 73 ~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~ 127 (133)
T smart00506 73 YVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKD 127 (133)
T ss_pred EEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHH
Confidence 9999999999987 37889999999999999999999999999999999998333
No 13
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.4e-29 Score=197.18 Aligned_cols=159 Identities=29% Similarity=0.423 Sum_probs=139.7
Q ss_pred ceeeeeEEecCCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCc
Q 030214 2 TFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGE 81 (181)
Q Consensus 2 ~~~~~~~~~~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~ 81 (181)
+++++.+.-..|.+|.+|+||++..++ |+|| +..++|+..+|++++||+++.||.+.. .|++|.
T Consensus 21 ~l~~f~~~~~~~~~i~lwr~d~~~l~v----~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~------~c~tG~ 84 (200)
T KOG2633|consen 21 SLEVFKIDKPDNGGISLWRGDGKTLEV----DAVV------LLGGKGVDEAIHRAAGPELPLECAYLH------GCRTGA 84 (200)
T ss_pred ccchhhccCccccCeeEeecccccccc----eeee------eccCcchhHHHHHhcCCcchHHHHhhc------CCCCCe
Confidence 456677777789999999999999988 9998 788999999999999999999999885 599999
Q ss_pred EEEecCCCCCCceEEEeeCCccCCCCC-hHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhh
Q 030214 82 ARITPGFKLPVSHVIHTVGPVFNFHCN-PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQ 152 (181)
Q Consensus 82 ~~~t~~~~L~~k~IiH~v~P~~~~~~~-~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~ 152 (181)
+.+|++++||+++|||+++|.|.+.+. ....|+.||++||.+|.+++++|||||+|++|.+|| .+++++ +
T Consensus 85 ak~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~-~ 163 (200)
T KOG2633|consen 85 AKSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIR-V 163 (200)
T ss_pred eEecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHH-H
Confidence 999999999999999999999999862 222699999999999999999999999999999999 667777 6
Q ss_pred hc-----CCCceEEEEEeCcchHHHHHHHH
Q 030214 153 TN-----CGFLESFWVELSAKVTTYDMDLI 177 (181)
Q Consensus 153 f~-----~~l~~V~~v~~~~~~~~~~~~~~ 177 (181)
|. ..++.+.|+.+|++.+..|.-..
T Consensus 164 ~f~~~~d~~l~~~~f~~~d~e~~~~~l~~~ 193 (200)
T KOG2633|consen 164 FFVKNKDSSLKTVPFLDYDSESYGAYLPEY 193 (200)
T ss_pred HHhhCCCceEEEEEEeccCCchHHHHHhhh
Confidence 52 33678999999999998876543
No 14
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.96 E-value=7.6e-29 Score=186.31 Aligned_cols=123 Identities=33% Similarity=0.529 Sum_probs=113.2
Q ss_pred EEEEEecccee-eccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCC-C
Q 030214 15 SLKISKGDISR-WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP-V 92 (181)
Q Consensus 15 ~i~i~~GdI~~-~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~-~ 92 (181)
.|++++|||++ .++ |+|||++|+.+.+++|++.+|++++|+++++++++..+.+ .+++|++++|++++++ +
T Consensus 1 ~i~~~~GDi~~~~~~----d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~~---~~~~G~~~~t~~~~~~~~ 73 (147)
T cd02749 1 KIKVVSGDITKPLGS----DAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKEL---ELQVGEAVLTKGYNLDGA 73 (147)
T ss_pred CEEEEECCCCCCCCC----CEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhccc---CCCCCCEEECcCCCCCcC
Confidence 37899999999 765 9999999999999999999999999999999999876432 3789999999999999 9
Q ss_pred ceEEEeeCCccCCCC--ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH
Q 030214 93 SHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI 144 (181)
Q Consensus 93 k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~ 144 (181)
+||+|+++|+|.... .+.+.|++||++||..|.+++++|||||.||||.+|+
T Consensus 74 ~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~ 127 (147)
T cd02749 74 KYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGF 127 (147)
T ss_pred CEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCC
Confidence 999999999998864 4678999999999999999999999999999999998
No 15
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.95 E-value=3.4e-27 Score=170.61 Aligned_cols=111 Identities=41% Similarity=0.630 Sum_probs=100.7
Q ss_pred EEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCCceEEEeeCCccCCCC--ChHHHH
Q 030214 36 VSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHC--NPEDIL 113 (181)
Q Consensus 36 Vn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~--~~~~~L 113 (181)
||++|+++.+++|++++|++++|+++++++++.++.+ +++++|++++|+++++++++|||+++|.|.+.. .+.+.|
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~~--~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L 78 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKKG--GELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEAL 78 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHHH--HSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhccc--CcccCCCeeeecCCCccccceEEEecceeccccccccHHHH
Confidence 8999999999999999999999999999998875321 368999999999999999999999999997443 789999
Q ss_pred HHHHHHHHHHHHhCCCcEEEecccccchhHHHHHH
Q 030214 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHA 148 (181)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~~~~~ 148 (181)
+++|++||+.|++++++||+||+||||++|+.++.
T Consensus 79 ~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~ 113 (118)
T PF01661_consen 79 ESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDE 113 (118)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHH
T ss_pred HHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHH
Confidence 99999999999999999999999999999984443
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.92 E-value=2.6e-27 Score=216.79 Aligned_cols=164 Identities=21% Similarity=0.229 Sum_probs=142.9
Q ss_pred cCCcEEEEEe----ccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhH---HHHHhhcccc------------
Q 030214 11 STKTSLKISK----GDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDL---QKACYQIPEA------------ 71 (181)
Q Consensus 11 ~~~~~i~i~~----GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l---~~e~~~~~~~------------ 71 (181)
..+.++.+++ |||+.+++ |+|||++|+.+.+++|+.++|+++||+++ +++|+++.++
T Consensus 472 ~~~~~~~~~~~~~~~dit~~~~----d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~ 547 (725)
T PRK13341 472 QEGERLAILRDRLWSDITWQRH----DRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVL 547 (725)
T ss_pred hcccHHHHHHHHHhcccccccc----ceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccc
Confidence 4567788889 99999877 99999999999999999999999999999 8888764321
Q ss_pred --------CC----------CCCCCCCcEEEe------------cCCCCCCceEEEeeCCccCCCCChHHHHHHHHHHHH
Q 030214 72 --------QP----------RVRCPPGEARIT------------PGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCL 121 (181)
Q Consensus 72 --------~~----------~~~l~~G~~~~t------------~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L 121 (181)
.. .|++++|++++| ++|+|+++||||+|||.|+.+.. .+.|.+||+++|
T Consensus 548 ~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L 626 (725)
T PRK13341 548 LDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSAL 626 (725)
T ss_pred cccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHH
Confidence 00 368999999999 99999999999999999988753 568999999999
Q ss_pred HHHHhCCCc----------EEEecccccchhHH--------HHHHHhhhhc---CCCceEEEEEeCcchHHHHHHHHHhh
Q 030214 122 SVGKANNIQ----------YIAFPAISCGVSQI--------MTHAIKLQTN---CGFLESFWVELSAKVTTYDMDLIETA 180 (181)
Q Consensus 122 ~~a~~~~~~----------sIa~P~l~tG~~g~--------~~~~i~~~f~---~~l~~V~~v~~~~~~~~~~~~~~~~~ 180 (181)
..|++++++ |||||+||||++|| +.++++ +|. ++..++.++.++++.+..|++.|...
T Consensus 627 ~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 705 (725)
T PRK13341 627 LEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIK-RWLAQGPDYRQALATNLEEERICNLDEELTRI 705 (725)
T ss_pred HHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHH-HHHhcCCcHHHHHhccCCHHHHHHHHHHHHHH
Confidence 999999999 99999999999998 677888 875 33567779999999999999988754
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.88 E-value=6.6e-22 Score=147.93 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=101.2
Q ss_pred EEEEEeccceee-ccCCCCcEEEEccCCCCCCCchHHHHHHHHhChh----HHHHHhhccccCCCCCCCCCcEE-EecCC
Q 030214 15 SLKISKGDISRW-CVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPD----LQKACYQIPEAQPRVRCPPGEAR-ITPGF 88 (181)
Q Consensus 15 ~i~i~~GdI~~~-~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~----l~~e~~~~~~~~~~~~l~~G~~~-~t~~~ 88 (181)
+|.+++|||++. ++ |+|||++|+.+.+|+|++.+|.++. |+ +++.|++. .+..|++. ++.++
T Consensus 1 ~i~~v~GDi~~~~~~----d~Iv~~~N~~~~mG~Gia~~i~~~~-p~~~~~~~~~~~~~-------~~~~G~~~~~~~~~ 68 (140)
T cd02901 1 MITYVKGDLLHAPEA----AALAHAVNCDGVMGKGIALQFKEKF-PEFVEEYRAACKKK-------ELLLGGVAVLERGS 68 (140)
T ss_pred CeEEEcCccccCCCC----CEEEEEEcCCCccChHHHHHHHHHC-cHHHHHHHHHHHhc-------CCCCCcEEEEecCC
Confidence 378999999998 65 9999999999999999999999984 44 44445443 34566655 45567
Q ss_pred CCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHHHHH
Q 030214 89 KLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTH 147 (181)
Q Consensus 89 ~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~~~~ 147 (181)
++++++|+|+++|.|.+.....+.|++|++++++.|++++++||+||.||||.+|+.++
T Consensus 69 ~~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~ 127 (140)
T cd02901 69 SLVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWE 127 (140)
T ss_pred CCCceEEEEeeccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHH
Confidence 77899999999998777556788999999999999999999999999999999999433
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.78 E-value=1.1e-17 Score=127.35 Aligned_cols=145 Identities=14% Similarity=0.057 Sum_probs=111.9
Q ss_pred EEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEE-ecCCCCCCc
Q 030214 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARI-TPGFKLPVS 93 (181)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~-t~~~~L~~k 93 (181)
.|++++|||++...+ ..++|||++|....+|+|++.+|.++++ ++.++.++.- .++..+.|++.+ +.+++.+.+
T Consensus 2 ~i~~v~GDl~~~~~~-~~~~i~h~~N~~g~mG~GIA~~~k~~~P-~~~~~y~~~~---~~~~~~lG~~~~~~~~~~~~~~ 76 (154)
T PHA02595 2 IVDYIKGDIVALFLQ-GKGNIAHGCNCFHTMGSGIAGQLAKAFP-QILEADKLTT---EGDVEKLGTFSVWEKYVGGHKA 76 (154)
T ss_pred eEEEECCcccccccC-CCceEEEeeCCCCcCChHHHHHHHHHcC-hHHHHHHHHh---cCCccccceEEEEEeeccCCCE
Confidence 478899999877421 2379999999999999999999999995 6666655443 123567899965 566777789
Q ss_pred eEEEeeCCccCCCC-ChHHHHHHHHHHHHHHHHhCCC-cEEEecccccchhHHHHH----HHhhhhcCCCceEEEEEeCc
Q 030214 94 HVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNI-QYIAFPAISCGVSQIMTH----AIKLQTNCGFLESFWVELSA 167 (181)
Q Consensus 94 ~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~-~sIa~P~l~tG~~g~~~~----~i~~~f~~~l~~V~~v~~~~ 167 (181)
||+|..+- |+.+. .+.+.|++++++..+.++++++ .||+||.||||++|.-++ .+. ++.+.+ +|.++.|++
T Consensus 77 ~I~nl~tq-~~~~~~~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~-~~~~~~-~i~Vy~~~~ 153 (154)
T PHA02595 77 YCFNLYTQ-FDPGPNLEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIID-EATPDI-DIVVVEYEK 153 (154)
T ss_pred EEEEEecc-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHH-HhcCCC-cEEEEEecC
Confidence 99999765 77665 4577899999999999999998 999999999999999333 333 554444 477777764
No 19
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=99.01 E-value=3.5e-09 Score=86.85 Aligned_cols=133 Identities=22% Similarity=0.277 Sum_probs=78.6
Q ss_pred cEEEEEeccceeecc---------CCCCcEEEEccCCCCCCCchHHHHHHHHhChh-HHHHHhhccccCCCCCCCCCcEE
Q 030214 14 TSLKISKGDISRWCV---------DRSSDAIVSPTNEILLLGGFTAAAIHEAAGPD-LQKACYQIPEAQPRVRCPPGEAR 83 (181)
Q Consensus 14 ~~i~i~~GdI~~~~~---------~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~-l~~e~~~~~~~~~~~~l~~G~~~ 83 (181)
..+.+..|++....- ....|+||.|+||..-+|||...+|++..|.+ ++.-+++.. .....++|++-
T Consensus 42 ~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l---~~~y~pvGs~t 118 (280)
T PF14519_consen 42 NYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQL---GERYHPVGSCT 118 (280)
T ss_dssp --EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHT---TTS---TT--E
T ss_pred ceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHH---hccccCCCeeE
Confidence 348888888774431 12479999999999999999999999999865 444444433 22346788877
Q ss_pred EecCC----------CCCCceEEEeeC---C---ccCCCC---ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH
Q 030214 84 ITPGF----------KLPVSHVIHTVG---P---VFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI 144 (181)
Q Consensus 84 ~t~~~----------~L~~k~IiH~v~---P---~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~ 144 (181)
+.+.. +-.++||+|+.+ | .|+... ...+.+-++.+|.+..+. ..+.++.+|.||||.+|+
T Consensus 119 vIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV 197 (280)
T PF14519_consen 119 VIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGV 197 (280)
T ss_dssp EEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT--
T ss_pred EEECchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCC
Confidence 76642 235789999975 2 343322 235667788889887764 569999999999999999
Q ss_pred --------HHHHHh
Q 030214 145 --------MTHAIK 150 (181)
Q Consensus 145 --------~~~~i~ 150 (181)
|.-|++
T Consensus 198 ~p~~sAk~M~fAl~ 211 (280)
T PF14519_consen 198 PPEISAKQMAFALR 211 (280)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 555665
No 20
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=98.82 E-value=1.5e-07 Score=71.51 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=91.5
Q ss_pred EEEEeccceeeccC-CCCcEEEEccCCCCCCC-chHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCC----
Q 030214 16 LKISKGDISRWCVD-RSSDAIVSPTNEILLLG-GFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFK---- 89 (181)
Q Consensus 16 i~i~~GdI~~~~~~-~~~DaIVn~an~~l~~~-~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~---- 89 (181)
|+.++||+++...+ .+...|++..|.....| +|++.+|.++. |+..+.-+...+ .+.+..|++.+.+...
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~~---~~dl~LG~~~li~v~~~~~~ 77 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAGK---MKDLHLGDLHLFPIDDKNSR 77 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHHh---cCCCccccEEEEEeccccCC
Confidence 78899999987642 12469999999999888 68999999988 555544443221 1256689998876532
Q ss_pred C-CCceEEEeeCCccCCCC----ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH
Q 030214 90 L-PVSHVIHTVGPVFNFHC----NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI 144 (181)
Q Consensus 90 L-~~k~IiH~v~P~~~~~~----~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~ 144 (181)
. +..||...++....+.. -+...|++|+..+-..|.+ +-.||.+|-||+|.+|.
T Consensus 78 ~~~~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~ 136 (152)
T cd03331 78 LKGPDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSF 136 (152)
T ss_pred CCCCeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCC
Confidence 1 14688888887654432 4678888888888887765 45889999999999998
No 21
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=97.23 E-value=0.012 Score=52.64 Aligned_cols=140 Identities=12% Similarity=0.045 Sum_probs=97.1
Q ss_pred cEEEEccCCCCCCCchHHHHHHHHhCh-------hHHHHHhhc----c----------c----c------------CCCC
Q 030214 33 DAIVSPTNEILLLGGFTAAAIHEAAGP-------DLQKACYQI----P----------E----A------------QPRV 75 (181)
Q Consensus 33 DaIVn~an~~l~~~~gv~~ai~~~~G~-------~l~~e~~~~----~----------~----~------------~~~~ 75 (181)
-++|--++.++....|..+.+.+.|-. ++.+.+... . + . .+..
T Consensus 291 sg~Vllvd~~~~~~~~~~~~f~~~C~~sTefHF~~i~~Ql~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (510)
T PF10154_consen 291 SGLVLLVDNRINSYSGIKKDFARVCEQSTEFHFPSIDEQLEKIQESVLYARRQRESRSKSQIDSNNSNGGSEGKPKRGSS 370 (510)
T ss_pred eeEEEEeCCCcccccchHHHHHHHHHhhcccCcCCHHHHHHHHHHHHhhhhhhhhcccccccCcccccccCCcccccCCC
Confidence 567878888888888888888888842 233322211 1 0 0 0123
Q ss_pred CCCCCcEEEecCCCCC-CceEEEeeCCc-cCCCC-ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------
Q 030214 76 RCPPGEARITPGFKLP-VSHVIHTVGPV-FNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI-------- 144 (181)
Q Consensus 76 ~l~~G~~~~t~~~~L~-~k~IiH~v~P~-~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~-------- 144 (181)
.+.+||+++|.-.||. +..|+|.|.-. .+.+. ++..-+-..+||+|+.|-+.++.+|.+|++=+....-
T Consensus 371 ~l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~ 450 (510)
T PF10154_consen 371 TLKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCL 450 (510)
T ss_pred cCCCCceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHH
Confidence 5689999999999997 67888998543 22222 5666788899999999999999999999998775433
Q ss_pred -----HHHHHhhhhc--------CCCceEEEEEeCcchHHHH
Q 030214 145 -----MTHAIKLQTN--------CGFLESFWVELSAKVTTYD 173 (181)
Q Consensus 145 -----~~~~i~~~f~--------~~l~~V~~v~~~~~~~~~~ 173 (181)
+++.+| -|. ...++|.|++.+.-..+.|
T Consensus 451 ~Raelv~k~vk-g~~~e~~~~~~~~~~tvqf~~P~~~~~~~f 491 (510)
T PF10154_consen 451 KRAELVFKCVK-GFMMEMASWGGGESRTVQFLLPQGISDEMF 491 (510)
T ss_pred HHHHHHHHHHH-HHHHHHhhhcCccceeEEEeCCCCCCHHHH
Confidence 455565 441 2357899998876544444
No 22
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=97.00 E-value=0.0036 Score=51.72 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=92.5
Q ss_pred CcEEEEEeccceeecc------CCCCcEEEEccCCCCCCCchHHH------HHHHHhC--hhHH--HHHhhccccCCCCC
Q 030214 13 KTSLKISKGDISRWCV------DRSSDAIVSPTNEILLLGGFTAA------AIHEAAG--PDLQ--KACYQIPEAQPRVR 76 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~------~~~~DaIVn~an~~l~~~~gv~~------ai~~~~G--~~l~--~e~~~~~~~~~~~~ 76 (181)
..+|.|+.+|-.+.-. ....-++.|.||.....||=+.+ +|.+.-+ +.|. .+.-.. ..+...+
T Consensus 55 ~t~i~V~~~dtl~aA~~L~~~~~~~~v~vLNfASa~~PGGG~l~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~-~r~~~~p 133 (266)
T TIGR02452 55 RTELKVVNESTLHAAVRLKESYFAGKVALLNFASAKNPGGGFLNGAQAQEESLCRASALYPCLIKFNEYYEF-HRHQRSP 133 (266)
T ss_pred CceEEEEcCCHHHHHHHHHhhccCCCeEEEeccCcCCCCCCcccCccchHHHHHHhccHHHHHhcchhHhhh-hcccCCC
Confidence 4678999998532111 01236899999887665432222 3333332 1221 111111 0111224
Q ss_pred CCCCcEEEecC--------CCC-CCc---eEEEeeCCccCCC-----C---ChHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 030214 77 CPPGEARITPG--------FKL-PVS---HVIHTVGPVFNFH-----C---NPEDILRSAYKNCLSVGKANNIQYIAFPA 136 (181)
Q Consensus 77 l~~G~~~~t~~--------~~L-~~k---~IiH~v~P~~~~~-----~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 136 (181)
+..-.+++++. +.+ +-. -+|-++.|.+... . ...+.+++-++.+|..|..+|.+++.+.+
T Consensus 134 l~~~~~IYSP~V~vFR~d~g~~l~~p~~vsvIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA 213 (266)
T TIGR02452 134 LYSDRAIYSPNVPVFRNDDGDLLNEPFLASFITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGA 213 (266)
T ss_pred CCCCceEECCCcEEEECCCCCcccCCceeeEEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 44444444442 233 222 2555666776421 1 23578999999999999999999999999
Q ss_pred cccchhHH-------HHHHHhh---hhcCCCceEEEEEeCcc
Q 030214 137 ISCGVSQI-------MTHAIKL---QTNCGFLESFWVELSAK 168 (181)
Q Consensus 137 l~tG~~g~-------~~~~i~~---~f~~~l~~V~~v~~~~~ 168 (181)
+|||.|+- ++..+.. +|...++.|.|-++|..
T Consensus 214 ~GCG~f~N~p~~VA~~f~evL~~~~ef~g~F~~VvFAI~d~~ 255 (266)
T TIGR02452 214 WGCGVFGNDPAEVAKIFHDLLSPGGIFKGRIKEVVFAILDRH 255 (266)
T ss_pred ccccccCCCHHHHHHHHHHHhccCccccCceeEEEEEEeCCC
Confidence 99999988 4444431 46677899999999854
No 23
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.10 E-value=0.33 Score=39.05 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH-------HH-HHHh--hhhcCCCceEEEEEeCcc--hHHHHHHHH
Q 030214 110 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI-------MT-HAIK--LQTNCGFLESFWVELSAK--VTTYDMDLI 177 (181)
Q Consensus 110 ~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~-------~~-~~i~--~~f~~~l~~V~~v~~~~~--~~~~~~~~~ 177 (181)
.+.|....+.+|.+|..++.+.+.+-+.|||.|+- ++ +.+. .++...++.|.|-++|.. ...+|++.+
T Consensus 199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g~fkhv~FavlD~n~~~~~iFr~el 278 (285)
T COG4295 199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLGDFKHVVFAVLDRNMTIVNIFRKEL 278 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhcccceEEEEEecCCchHHHHHHHHH
Confidence 56888899999999999999999999999999977 12 2332 245677899999999854 566888877
Q ss_pred H
Q 030214 178 E 178 (181)
Q Consensus 178 ~ 178 (181)
|
T Consensus 279 e 279 (285)
T COG4295 279 E 279 (285)
T ss_pred H
Confidence 6
No 24
>PHA03033 hypothetical protein; Provisional
Probab=92.04 E-value=0.61 Score=34.17 Aligned_cols=81 Identities=12% Similarity=0.013 Sum_probs=56.3
Q ss_pred EEEEEeccceeeccCCCCcEEEEccCCCCCCCchHH-HHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCCc
Q 030214 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTA-AAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVS 93 (181)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~-~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~k 93 (181)
++.-+.|+|.+.-...+...+.......+.||.|++ ..+.+..|. -+|+++. ...+|++.+-.-. -+
T Consensus 2 ~i~eIng~~~DLFS~p~~~sLaHCIsAD~~MGaGIA~v~FKkkyg~--V~eLk~Q-------kk~~GeVAvLk~d---~R 69 (142)
T PHA03033 2 KIEYINENIWDFLSDDDNINIISFISADFILCKDDCFIYIKKKYNS--IKELKKQ-------KKKKGEVAYIYKN---NK 69 (142)
T ss_pred ceEEecCcchhhhcCCCcceEeeeehhhhhcCCChhhhhHHHHhCC--HHHHHhh-------ccCCCeEEEEecC---CE
Confidence 456678955544433456788888888999999999 777777776 3335444 2456777655433 48
Q ss_pred eEEEeeCCccCCCC
Q 030214 94 HVIHTVGPVFNFHC 107 (181)
Q Consensus 94 ~IiH~v~P~~~~~~ 107 (181)
||+..+.-+|-+..
T Consensus 70 yIYYLITKdyie~~ 83 (142)
T PHA03033 70 YIIYIIIADYIEDI 83 (142)
T ss_pred EEEEEEeHHHHHHH
Confidence 99999988876643
No 25
>PHA00684 hypothetical protein
Probab=77.90 E-value=23 Score=26.02 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=60.5
Q ss_pred EEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCCceEEEeeCCccCCCCChHHHH
Q 030214 34 AIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDIL 113 (181)
Q Consensus 34 aIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L 113 (181)
+-|-.+|....+++|.++.-++..|-.. +.++=..|+ ++-+|.+. .++-.+-..+.+
T Consensus 2 IFVFGSNlaG~Hg~GAA~~A~~~~GA~~-----------G~g~G~~G~-----SYAIPT~~-------~~~l~~~~l~~I 58 (128)
T PHA00684 2 IFVFGSNLAGAHGAGAAAAAHKEHGAAW-----------GVGEGRTGH-----SYAIPTKA-------GTVISTLSLPDI 58 (128)
T ss_pred eEEecCCccccccchHHHHHHHHhChhh-----------ccccCCCCc-----eeeccccc-------CCccccccHHHH
Confidence 4577888888889988876666555321 111111222 22222221 111112356799
Q ss_pred HHHHHHHHHHHHhCCCcEEEecccccchhHHHHHHHh
Q 030214 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIK 150 (181)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~~~~~i~ 150 (181)
+..+..-+..|.++--.+.-+..||||+.|+--+.|-
T Consensus 59 ~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIA 95 (128)
T PHA00684 59 GAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIA 95 (128)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHH
Confidence 9999999999999999999999999999999444444
No 26
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=61.25 E-value=21 Score=30.54 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=29.4
Q ss_pred CCceEEEeeCCccCCCCC-hHHHHH---HHHHHHHHHHHhCC-CcEEEe
Q 030214 91 PVSHVIHTVGPVFNFHCN-PEDILR---SAYKNCLSVGKANN-IQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~-~~~~L~---~~~~~~L~~a~~~~-~~sIa~ 134 (181)
.|++|||++.|.-....+ +.+.+. +...|+|+.|.+.+ ++.|.+
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~ 126 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY 126 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence 399999999996554331 223444 44468888887766 777766
No 27
>KOG4506 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.32 E-value=13 Score=32.58 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=44.1
Q ss_pred CCCCcEEEecCCCCC-CceEEEeeCCc-cCCCC-ChHHHHHHHHHHHHHHHHhCCCcEEEecccc
Q 030214 77 CPPGEARITPGFKLP-VSHVIHTVGPV-FNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAIS 138 (181)
Q Consensus 77 l~~G~~~~t~~~~L~-~k~IiH~v~P~-~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~ 138 (181)
+-+|++.++...++. ...++|.+.-. ...+. ++..---..+||+++.|-.+++++|.+|++-
T Consensus 417 llP~eal~qd~sc~seihiafHL~VDd~lkS~eInaR~P~iaGlRNIiktaar~d~sTIhIPLLL 481 (598)
T KOG4506|consen 417 LLPGEALIQDHSCLSEIHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLL 481 (598)
T ss_pred cCchhhhhcCccccchhheeeEeeehhhhhcCCccCcCcHHHHHHHHHHHHHhcCCceeeeeeEE
Confidence 457999988887775 45677876542 22222 3333444678999999999999999999885
No 28
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=59.25 E-value=31 Score=28.42 Aligned_cols=44 Identities=23% Similarity=0.392 Sum_probs=29.4
Q ss_pred CCceEEEeeCCccCCCC-ChH---HHHHHHHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVFNFHC-NPE---DILRSAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~-~~~---~~L~~~~~~~L~~a~~~~~~sIa~ 134 (181)
.|+.|||++.|.-..+. ..+ +.=-+.-+++|+.|.+.+++.+.+
T Consensus 66 g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVy 113 (280)
T PF01073_consen 66 GVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVY 113 (280)
T ss_pred CCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 37999999987433322 122 222255689999999999997755
No 29
>PLN02214 cinnamoyl-CoA reductase
Probab=55.50 E-value=22 Score=29.90 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=26.9
Q ss_pred CceEEEeeCCccCCCCChHHHH---HHHHHHHHHHHHhCCCcEEEe
Q 030214 92 VSHVIHTVGPVFNFHCNPEDIL---RSAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L---~~~~~~~L~~a~~~~~~sIa~ 134 (181)
++.|||+++|.... ..+.+ -....++|+.|.+.+++.+.+
T Consensus 82 ~d~Vih~A~~~~~~---~~~~~~~nv~gt~~ll~aa~~~~v~r~V~ 124 (342)
T PLN02214 82 CDGVFHTASPVTDD---PEQMVEPAVNGAKFVINAAAEAKVKRVVI 124 (342)
T ss_pred CCEEEEecCCCCCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 78999999986432 12222 234567888888888876654
No 30
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=46.51 E-value=52 Score=28.38 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=29.0
Q ss_pred CCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 134 (181)
.++.|||++++.+.......+.-.....++++.|.+.+.+.+.+
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~ 179 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL 179 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence 47999999887553322222222345678888888888887665
No 31
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=46.46 E-value=69 Score=27.19 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccccchhHHHHHHHhhhhcCCCceEEEEEeCcchHHHHHHHHH
Q 030214 110 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLIE 178 (181)
Q Consensus 110 ~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~~~~~i~~~f~~~l~~V~~v~~~~~~~~~~~~~~~ 178 (181)
...|++.++.++..-.+.+ +.|-+=.|.+|.+.|.++++. ++.....+|.++.|++.-.+.=++..+
T Consensus 116 k~~l~~~i~~ai~~L~~~g-~pvrIlDIAaG~GRYvlDal~-~~~~~~~~i~LrDys~~Nv~~g~~li~ 182 (311)
T PF12147_consen 116 KVHLEELIRQAIARLREQG-RPVRILDIAAGHGRYVLDALE-KHPERPDSILLRDYSPINVEKGRALIA 182 (311)
T ss_pred HHHHHHHHHHHHHHHHhcC-CceEEEEeccCCcHHHHHHHH-hCCCCCceEEEEeCCHHHHHHHHHHHH
Confidence 4566777776666544433 677777899999999999998 887766789999998887765555443
No 32
>CHL00194 ycf39 Ycf39; Provisional
Probab=46.38 E-value=54 Score=27.09 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=28.7
Q ss_pred CceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEe
Q 030214 92 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 134 (181)
++.|||++++.|.......+.=....+++++.|.+.+++.+.+
T Consensus 65 ~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 65 VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 6899999876654322111122345678889999999987766
No 33
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=44.28 E-value=40 Score=25.03 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=29.1
Q ss_pred CCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 134 (181)
+++.|||+++|.+. + ...++++++.+++.+.+.+.+
T Consensus 60 ~~d~vi~~~~~~~~------~--~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 60 GADAVIHAAGPPPK------D--VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TSSEEEECCHSTTT------H--HHHHHHHHHHHHHTTSSEEEE
T ss_pred hcchhhhhhhhhcc------c--cccccccccccccccccccee
Confidence 48999999988764 1 677888888888889988776
No 34
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=43.10 E-value=48 Score=27.83 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=28.5
Q ss_pred CceEEEeeCCccCCCC--ChHHHH---HHHHHHHHHHHHhCCCcEEEecc
Q 030214 92 VSHVIHTVGPVFNFHC--NPEDIL---RSAYKNCLSVGKANNIQYIAFPA 136 (181)
Q Consensus 92 ~k~IiH~v~P~~~~~~--~~~~~L---~~~~~~~L~~a~~~~~~sIa~P~ 136 (181)
+++|||+++....... +..... -..-.++|+.|.+.+++.+.++.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 6899999975322111 112222 23456888999999998887754
No 35
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=40.60 E-value=42 Score=23.52 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=32.0
Q ss_pred ceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 030214 93 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 136 (181)
Q Consensus 93 k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 136 (181)
-.|-|+..|.|-.++- .=+..+..+|+.|.+.+.+-|.++.
T Consensus 40 i~i~HT~V~d~lrGqG---ia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQG---IAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCc---HHHHHHHHHHHHHHHcCCeEcccch
Confidence 4677999999888762 3345577889999999999887765
No 36
>PRK07475 hypothetical protein; Provisional
Probab=38.19 E-value=1.6e+02 Score=23.71 Aligned_cols=96 Identities=10% Similarity=0.034 Sum_probs=52.9
Q ss_pred CCCCCcEEEecCCCCCCceEEEeeCCccCCCC---ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHHHHHHHh--
Q 030214 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIK-- 150 (181)
Q Consensus 76 ~l~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~~~~~i~-- 150 (181)
+..+||+.--.++ ++.-.++.+- .-.... .....+...+..+.+..++.|++.|++|+ |..++..+.++
T Consensus 26 p~~pgd~~~~~t~--~~pv~~~~v~-g~~~~~~~~~~~~~~~~~l~~aa~~L~~~G~d~I~~~C---gt~~~~~~~l~~~ 99 (245)
T PRK07475 26 PRIPGDVGNAATW--PFPVRYKVVR-GATPERVVEGDDPSLLDAFVAAARELEAEGVRAITTSC---GFLALFQRELAAA 99 (245)
T ss_pred CCCCCCCCCcccC--CcCEEEEeeC-CCCHHHHhcCCCccHHHHHHHHHHHHHHcCCCEEEech---HHHHHHHHHHHHH
Confidence 4557887644444 4555555552 111100 12234666677777777889999999998 43343111111
Q ss_pred ------------h----hhcCCCceEEEEEeCcchHHHHHHHHHh
Q 030214 151 ------------L----QTNCGFLESFWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 151 ------------~----~f~~~l~~V~~v~~~~~~~~~~~~~~~~ 179 (181)
+ +.....++|-++..+... +|.+.|+.
T Consensus 100 ~~VPv~~ss~~~v~~l~~~~~~~~kIGILtt~~t~--l~~~~l~~ 142 (245)
T PRK07475 100 LGVPVATSSLLQVPLIQALLPAGQKVGILTADASS--LTPAHLLA 142 (245)
T ss_pred cCCCEeccHHHHHHHHHHhccCCCeEEEEeCCchh--hhHHHHHh
Confidence 0 112235678877777664 56666653
No 37
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=37.94 E-value=1.1e+02 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=26.0
Q ss_pred CceEEEeeCCccCCCCChH-HHHH---HHHHHHHHHHHhC-CCcEEEe
Q 030214 92 VSHVIHTVGPVFNFHCNPE-DILR---SAYKNCLSVGKAN-NIQYIAF 134 (181)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~-~~L~---~~~~~~L~~a~~~-~~~sIa~ 134 (181)
+++|||+++|......+.. +.++ ....++|+.|.+. +++.+.+
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~ 124 (322)
T PLN02662 77 CEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVV 124 (322)
T ss_pred CCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 6899999998543211111 2222 3446777777665 7777665
No 38
>PTZ00325 malate dehydrogenase; Provisional
Probab=37.07 E-value=1e+02 Score=26.13 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=34.1
Q ss_pred CCceEEEeeCCccCCCCChHHHHHH---HHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVFNFHCNPEDILRS---AYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~sIa~ 134 (181)
.++.|+|++|+.-..+....+.|.. .++++.+...+.+.+.+.+
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4899999999865444344566777 8889999988999888766
No 39
>PLN02778 3,5-epimerase/4-reductase
Probab=35.39 E-value=69 Score=26.37 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=26.9
Q ss_pred CCceEEEeeCCccCCC-----CChHHHHH---HHHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVFNFH-----CNPEDILR---SAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~-----~~~~~~L~---~~~~~~L~~a~~~~~~sIa~ 134 (181)
.+++|||++++..... .+..+.++ ..-.++|+.|.+.+++.+.+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4799999998753211 01222222 24468888888888876554
No 40
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=30.04 E-value=1e+02 Score=24.75 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=26.5
Q ss_pred CCceEEEeeCCcc----CCCCChHHH---HHHHHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVF----NFHCNPEDI---LRSAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~----~~~~~~~~~---L~~~~~~~L~~a~~~~~~sIa~ 134 (181)
.+++|||++++.- ... ..... -...-.++|+.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~-~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMT-YPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhh-CcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 3689999997631 111 11112 2234668888888888876665
No 41
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=28.17 E-value=1.7e+02 Score=23.88 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=25.3
Q ss_pred CceEEEeeCCccCCCCCh-HHHHH---HHHHHHHHHHHhC-CCcEEEe
Q 030214 92 VSHVIHTVGPVFNFHCNP-EDILR---SAYKNCLSVGKAN-NIQYIAF 134 (181)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~-~~~L~---~~~~~~L~~a~~~-~~~sIa~ 134 (181)
+++|||+++|......+. .+.+. ....++|+.|.+. +++.|.+
T Consensus 78 ~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~ 125 (322)
T PLN02986 78 CDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVIL 125 (322)
T ss_pred CCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEE
Confidence 799999999853221111 12233 3345777777764 6766655
No 42
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=27.55 E-value=1.7e+02 Score=22.61 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH
Q 030214 108 NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI 144 (181)
Q Consensus 108 ~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~ 144 (181)
.....|+.++++.+..+.+.|++.+- ..|..|+
T Consensus 22 ~~~~~ik~~L~~~i~~lie~G~~~fi----~GgalG~ 54 (177)
T PF06908_consen 22 PKIQVIKKALKKQIIELIEEGVRWFI----TGGALGV 54 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--EEE----E---TTH
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCEEE----ECCcccH
Confidence 45678999999999999999988754 4556666
No 43
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=23.60 E-value=48 Score=29.53 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=19.7
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEcc
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPT 39 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~a 39 (181)
+.+|.|++||+.+++...++|+||.=.
T Consensus 240 ~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 240 GDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp TTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred CCeEEEEeCcccCCCCCCceeEEEEec
Confidence 357999999999988756799999854
No 44
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=23.52 E-value=1e+02 Score=25.73 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=48.6
Q ss_pred CcEEEecCCCCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEe----cccccchhHH---HHHHHhhh
Q 030214 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF----PAISCGVSQI---MTHAIKLQ 152 (181)
Q Consensus 80 G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~----P~l~tG~~g~---~~~~i~~~ 152 (181)
|..++.-+..++++.-+|..-|+.-. .+.|...-...-+.|.++|++-+-. |.=..|..|. +++-+- +
T Consensus 119 G~~i~~~Ak~mGAktFVh~sfprhms----~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqfIlE~vp-~ 193 (275)
T PF12683_consen 119 GYTIVWAAKKMGAKTFVHYSFPRHMS----YELLARRRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQFILEDVP-K 193 (275)
T ss_dssp HHHHHHHHHHTT-S-EEEEEETTGGG----SHHHHHHHHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHHHHHHHH-H
T ss_pred cHHHHHHHHHcCCceEEEEechhhcc----hHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHHHHHHHH-H
Confidence 33444446678899999999997644 2344444444444689999998777 5555566555 455443 3
Q ss_pred hcCC-CceEEEEEeCcch-HHHHHHHHH
Q 030214 153 TNCG-FLESFWVELSAKV-TTYDMDLIE 178 (181)
Q Consensus 153 f~~~-l~~V~~v~~~~~~-~~~~~~~~~ 178 (181)
+... =+++-|.+-+..+ .-+.+.+++
T Consensus 194 ~i~kYGkdtaff~TN~a~~epllk~~~~ 221 (275)
T PF12683_consen 194 WIKKYGKDTAFFCTNDAMTEPLLKQALE 221 (275)
T ss_dssp HHHHH-S--EEEESSHHHHHHHHHHHHH
T ss_pred HHHHhCCceeEEecCccccHHHHHHHHH
Confidence 3211 2455554444444 335555554
No 45
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=23.24 E-value=1.6e+02 Score=23.53 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=30.7
Q ss_pred ceEEEeeCCccCCCC-C-----hHHHHHHHHHHHHHHHHhCCCcEEEec
Q 030214 93 SHVIHTVGPVFNFHC-N-----PEDILRSAYKNCLSVGKANNIQYIAFP 135 (181)
Q Consensus 93 k~IiH~v~P~~~~~~-~-----~~~~L~~~~~~~L~~a~~~~~~sIa~P 135 (181)
+.|||+++..+.... . ....-....+++|+.|.+.+.+.+.++
T Consensus 66 d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ 114 (314)
T COG0451 66 DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFA 114 (314)
T ss_pred CEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 789999987765543 1 123444556788888888899988883
No 46
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=22.89 E-value=1.8e+02 Score=24.30 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=35.0
Q ss_pred eEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--HHHHHhhhhc
Q 030214 94 HVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--MTHAIKLQTN 154 (181)
Q Consensus 94 ~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--~~~~i~~~f~ 154 (181)
.|.|++-|.--. +..+.++.+++..|++...+.|.+ +.+.-|. +++.|| +-.
T Consensus 33 ~I~h~tyPdnf~-----~e~EttIskI~~lAdDp~mKaIVv---~q~vpGt~~af~kIk-ekR 86 (275)
T PF12683_consen 33 MIKHVTYPDNFM-----SEQETTISKIVSLADDPDMKAIVV---SQAVPGTAEAFRKIK-EKR 86 (275)
T ss_dssp EEEEEE--TTGG-----GCHHHHHHHHHGGGG-TTEEEEEE---E-SS---HHHHHHHH-HH-
T ss_pred eEEEEeCCCccc-----chHHHHHHHHHHhccCCCccEEEE---eCCCcchHHHHHHHH-hcC
Confidence 789999886322 357889999999999999999987 5666666 788887 553
No 47
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=21.45 E-value=3.8e+02 Score=20.55 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHHHHHHHhhhhcCCCceEEEEEeCcchHHHHHHHHHh
Q 030214 108 NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQIMTHAIKLQTNCGFLESFWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 108 ~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~~~~~i~~~f~~~l~~V~~v~~~~~~~~~~~~~~~~ 179 (181)
...+.+++++-|.|+.-. +..-.+=-|-+|.+.+-++++. ..-++|.||-.+.+.....++.+++
T Consensus 23 PT~drvrealFniL~~~~---~~g~~vLDLFaGSGalGlEALS----RGA~~v~fVE~~~~a~~~i~~N~~~ 87 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRN---LEGARVLDLFAGSGALGLEALS----RGAKSVVFVEKNRKAIKIIKKNLEK 87 (183)
T ss_dssp SSSHHHHHHHHHHHHCH----HTT-EEEETT-TTSHHHHHHHH----TT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcccc---cCCCeEEEcCCccCccHHHHHh----cCCCeEEEEECCHHHHHHHHHHHHH
Confidence 356799999999998541 3333444566666666666665 4557888888888888887777664
No 48
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=21.43 E-value=1.6e+02 Score=23.64 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=24.7
Q ss_pred CCceEEEeeCCccCCCCChH---HHHHHHHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVFNFHCNPE---DILRSAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~---~~L~~~~~~~L~~a~~~~~~sIa~ 134 (181)
.++.|+|++++.-....+.. +.-.....++++.|.+.+.+ +.+
T Consensus 66 ~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~ 111 (314)
T TIGR02197 66 KIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGIP-FIY 111 (314)
T ss_pred CCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCCc-EEE
Confidence 48899999986321111111 11224457788888877764 443
No 49
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=20.33 E-value=61 Score=23.03 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccc
Q 030214 111 DILRSAYKNCLSVGKANNIQYIAFPAISCG 140 (181)
Q Consensus 111 ~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG 140 (181)
-.+..||+.....|.++|. .+|...|=
T Consensus 49 Ps~~~cyrr~~~~a~~~Gw---~iPS~~t~ 75 (108)
T PF09039_consen 49 PSFSACYRRLKRAAKENGW---PIPSEKTL 75 (108)
T ss_dssp --HHHHHHHHHHHHHHHT--------HHHH
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCCHHHH
Confidence 4799999999999999997 67776653
No 50
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=20.29 E-value=1.7e+02 Score=24.24 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=27.5
Q ss_pred EeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEec
Q 030214 97 HTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135 (181)
Q Consensus 97 H~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P 135 (181)
|---|.-+.+....+.-...+++|.++|.++|+++|.+.
T Consensus 78 HRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLA 116 (287)
T COG3623 78 HRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLA 116 (287)
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeec
Confidence 333455444334455666778899999999999999884
Done!