Query 030214
Match_columns 181
No_of_seqs 114 out of 1045
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q6z_A Poly [ADP-ribose] polym 100.0 2.4E-46 8.2E-51 297.4 17.7 169 5-180 28-212 (214)
2 3q71_A Poly [ADP-ribose] polym 100.0 3.3E-45 1.1E-49 291.7 18.7 164 8-179 33-213 (221)
3 2xd7_A Core histone macro-H2A. 100.0 5.4E-45 1.8E-49 285.9 18.9 165 7-179 12-192 (193)
4 1yd9_A Core histone macro-H2A. 100.0 5.1E-45 1.7E-49 286.0 17.5 165 7-179 12-189 (193)
5 1spv_A Putative polyprotein/ph 100.0 2E-44 6.7E-49 280.8 18.5 160 13-179 2-173 (184)
6 4abl_A Poly [ADP-ribose] polym 100.0 5.3E-44 1.8E-48 277.8 16.7 149 11-179 19-180 (183)
7 2x47_A Macro domain-containing 100.0 2.6E-43 9E-48 283.6 17.1 156 13-179 61-230 (235)
8 2dx6_A Hypothetical protein TT 100.0 1.7E-42 5.9E-47 264.0 15.9 149 15-177 3-159 (159)
9 3kh6_A Poly [ADP-ribose] polym 100.0 6.4E-42 2.2E-46 269.0 16.8 149 11-179 30-191 (199)
10 1vhu_A Hypothetical protein AF 100.0 4.6E-42 1.6E-46 272.5 13.6 164 10-180 17-200 (211)
11 3eti_A X (ADRP) domain, macro 100.0 4.6E-42 1.6E-46 263.4 11.5 147 13-178 9-167 (168)
12 3gqe_A Non-structural protein 100.0 2.4E-40 8.3E-45 253.7 14.2 147 13-178 3-159 (168)
13 3gpg_A NSP3, non-structural pr 100.0 1E-40 3.5E-45 255.7 12.0 148 13-179 9-166 (168)
14 3ejg_A Non-structural protein 100.0 6.3E-40 2.2E-44 255.8 12.6 144 13-178 37-192 (193)
15 3ejf_A Non-structural protein 100.0 3.5E-39 1.2E-43 248.6 11.0 157 6-178 6-176 (176)
16 2acf_A Replicase polyprotein 1 100.0 5.4E-39 1.8E-43 249.4 11.5 150 9-175 15-172 (182)
17 2vri_A Non-structural protein 100.0 3.2E-38 1.1E-42 243.6 11.1 153 13-179 16-172 (174)
18 1njr_A 32.1 kDa protein in ADH 100.0 6.3E-36 2.1E-40 245.9 5.7 155 13-173 44-242 (284)
19 4gua_A Non-structural polyprot 100.0 1.2E-34 4.3E-39 252.0 13.8 147 13-178 343-499 (670)
20 2jyc_A Uncharacterized protein 100.0 1.2E-28 4E-33 187.7 13.1 139 10-166 16-159 (160)
21 2eee_A Uncharacterized protein 100.0 1.7E-28 5.8E-33 184.8 12.8 137 12-166 7-148 (149)
22 2fg1_A Conserved hypothetical 99.9 6.7E-27 2.3E-31 177.6 10.6 140 14-165 4-156 (158)
23 3sig_A PArg, poly(ADP-ribose) 98.7 1.6E-08 5.5E-13 82.5 5.4 166 13-179 64-276 (277)
24 3dhn_A NAD-dependent epimerase 50.3 19 0.00064 26.5 4.3 42 92-134 68-109 (227)
25 3h2s_A Putative NADH-flavin re 38.5 39 0.0013 24.6 4.4 42 91-135 62-103 (224)
26 3m2p_A UDP-N-acetylglucosamine 34.8 78 0.0027 24.4 5.8 44 91-134 62-106 (311)
27 3ew7_A LMO0794 protein; Q8Y8U8 24.9 1E+02 0.0034 22.1 4.6 42 91-136 61-102 (221)
28 3e48_A Putative nucleoside-dip 22.9 1.7E+02 0.0057 22.0 5.8 39 92-135 66-104 (289)
29 2qn6_B Translation initiation 22.8 78 0.0027 20.8 3.2 36 91-129 51-86 (93)
30 4id9_A Short-chain dehydrogena 21.9 1.1E+02 0.0037 23.9 4.5 44 91-134 77-123 (347)
31 4gqb_A Protein arginine N-meth 21.7 34 0.0012 30.7 1.6 27 13-39 410-436 (637)
32 3sxp_A ADP-L-glycero-D-mannohe 21.5 1.6E+02 0.0055 23.1 5.6 43 91-134 90-135 (362)
33 3gpi_A NAD-dependent epimerase 21.3 22 0.00076 27.2 0.3 43 92-134 64-106 (286)
34 2jl1_A Triphenylmethane reduct 21.2 1.5E+02 0.0051 22.2 5.1 40 92-136 67-106 (287)
35 4b8w_A GDP-L-fucose synthase; 21.2 1.3E+02 0.0045 22.6 4.8 44 91-134 61-110 (319)
36 3biy_A Histone acetyltransfera 21.0 74 0.0025 26.6 3.4 86 34-129 107-193 (380)
No 1
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=2.4e-46 Score=297.37 Aligned_cols=169 Identities=34% Similarity=0.432 Sum_probs=154.6
Q ss_pred eeeEEecCCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEE
Q 030214 5 VQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARI 84 (181)
Q Consensus 5 ~~~~~~~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~ 84 (181)
+.++.+.++.+|.+++|||+++++ |||||+||+.+.+++|+++||++++|++|++||+++.+. .+.+++|++++
T Consensus 28 ~~~~~~~~g~~I~v~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~i 101 (214)
T 3q6z_A 28 FSRTVLAPGVVLIVQQGDLARLPV----DVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKR--EGRLLPGNATI 101 (214)
T ss_dssp CEEEEEETTEEEEEEECCTTSCSS----SEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHH--HCCCCTTCEEE
T ss_pred EEEEEcCCCcEEEEEecccccCcC----CEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHH--cCCCCCCeEEE
Confidence 457788999999999999999876 999999999999999999999999999999999987643 24799999999
Q ss_pred ecCCCCCCceEEEeeCCccCCCC--ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc
Q 030214 85 TPGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN 154 (181)
Q Consensus 85 t~~~~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~ 154 (181)
|++|+|+|+||||+|+|.|+++. .+.+.|++||++||++|++++++|||||+||||++|| |+++++ +|.
T Consensus 102 T~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~-~fl 180 (214)
T 3q6z_A 102 SKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIK-ENF 180 (214)
T ss_dssp EECTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHH-HHT
T ss_pred EcCCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHH-HHH
Confidence 99999999999999999998864 2468999999999999999999999999999999999 788898 884
Q ss_pred ------CCCceEEEEEeCcchHHHHHHHHHhh
Q 030214 155 ------CGFLESFWVELSAKVTTYDMDLIETA 180 (181)
Q Consensus 155 ------~~l~~V~~v~~~~~~~~~~~~~~~~~ 180 (181)
+.+++|+||+||++.+++|++.+++.
T Consensus 181 ~~~~~~~~l~~V~fv~~d~~~~~~f~~~l~~~ 212 (214)
T 3q6z_A 181 QFKKDGHCLKEIYLVDVSEKTVEAFAEAVKTV 212 (214)
T ss_dssp SSCC--CCCCEEEEEESSHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 35789999999999999999999874
No 2
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-45 Score=291.73 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=148.6
Q ss_pred EEecCCcEEEEEeccceeeccCCCCcEEEEccCCCC-CCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEec
Q 030214 8 LSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEIL-LLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITP 86 (181)
Q Consensus 8 ~~~~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l-~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~ 86 (181)
+++.+|.+|.+++|||+++++ |||||+||+.+ .+++|+++||++++|++|++||+++.. ++++++|++++|+
T Consensus 33 ~~t~~g~~I~i~~GDIt~~~v----DAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~---~~~~~~G~a~iT~ 105 (221)
T 3q71_A 33 LVSPGGLQMLLVKEGVQNAKT----DVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQ---GVAVSMGTVLKTS 105 (221)
T ss_dssp EECTTCCEEEEEESCGGGCCS----SEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHH---TSCCCTTCEEEEE
T ss_pred eeecCCcEEEEEeCcccCCcC----CEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhc---cCCCCCCeEEEEc
Confidence 567889999999999999876 99999999999 478999999999999999999998752 3589999999999
Q ss_pred CCCCCCceEEEeeCCccCCCC-ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc---
Q 030214 87 GFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN--- 154 (181)
Q Consensus 87 ~~~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~--- 154 (181)
+|+|+|+||||+|+|.|+++. .+.+.|++||++||++|++++++|||||+||||+||| |+++++ +|.
T Consensus 106 g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~-~fl~~~ 184 (221)
T 3q71_A 106 SWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVF-KFSSKN 184 (221)
T ss_dssp CTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHH-HHHHHC
T ss_pred CCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHH-HHHHHc
Confidence 999999999999999999875 3568999999999999999999999999999999999 788888 883
Q ss_pred --CCCceEEEEEeCcc--hHHHHHHHHHh
Q 030214 155 --CGFLESFWVELSAK--VTTYDMDLIET 179 (181)
Q Consensus 155 --~~l~~V~~v~~~~~--~~~~~~~~~~~ 179 (181)
+.+++|+||+|+++ .+++|.+.|++
T Consensus 185 ~~~~l~~V~fv~f~~d~~~~~~f~~~l~~ 213 (221)
T 3q71_A 185 QLKTLQEVHFLLHPSDHENIQAFSDEFAR 213 (221)
T ss_dssp CCSSCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 46889999999765 55999998875
No 3
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=5.4e-45 Score=285.88 Aligned_cols=165 Identities=21% Similarity=0.311 Sum_probs=150.7
Q ss_pred eEEecCCcEEEEEeccceee---ccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEE
Q 030214 7 TLSFSTKTSLKISKGDISRW---CVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEAR 83 (181)
Q Consensus 7 ~~~~~~~~~i~i~~GdI~~~---~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~ 83 (181)
+-.+..|.+|.+++|||+++ ++ |||||+||+.+.+++|+++||++++|+++++||+++.+.+ +++++|+++
T Consensus 12 ~~~~~~~~~i~i~~GDIt~~~~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~ 85 (193)
T 2xd7_A 12 SKSLVLGQKLSLTQSDISHIGSMRV----EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQ--GPLEVAEAA 85 (193)
T ss_dssp EEECTTSCEEEEEECCGGGGGGCCC----SEEEEEECTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCTTCEE
T ss_pred ccccCCCCEEEEEeCcccccCCCCC----CEEEECCCccCCCccHHHHHHHHHhhHHHHHHHHHHHHHc--CCCCCCCeE
Confidence 33456789999999999999 66 9999999999999999999999999999999999876532 489999999
Q ss_pred EecCCCCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc-
Q 030214 84 ITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN- 154 (181)
Q Consensus 84 ~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~- 154 (181)
+|++++|+++||||+++|.|+.+ .+.+.|++||++||++|.+++++|||||+||||++|+ |+++++ +|.
T Consensus 86 iT~~~~L~~k~VIH~vgP~~~~~-~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~-~~l~ 163 (193)
T 2xd7_A 86 VSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAIS-AHFD 163 (193)
T ss_dssp EEECTTSSSSEEEEEECCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHH-HHHH
T ss_pred EeeCCCCCCCEEEEECCCcCCCc-chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999999765 6788999999999999999999999999999999999 788888 873
Q ss_pred ----CCCceEEEEEeCcchHHHHHHHHHh
Q 030214 155 ----CGFLESFWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 155 ----~~l~~V~~v~~~~~~~~~~~~~~~~ 179 (181)
+.+++|+||+|+++++++|++.|+.
T Consensus 164 ~~~~~~l~~V~fv~~~~~~~~~~~~~l~~ 192 (193)
T 2xd7_A 164 DSSASSLKNVYFLLFDSESIGIYVQEMAK 192 (193)
T ss_dssp HCSSCCCCEEEEEECSHHHHHHHHHHHHC
T ss_pred hcCCCCCCEEEEEECCHHHHHHHHHHHhh
Confidence 3588999999999999999999864
No 4
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=5.1e-45 Score=285.99 Aligned_cols=165 Identities=24% Similarity=0.402 Sum_probs=150.5
Q ss_pred eEEecCCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEec
Q 030214 7 TLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITP 86 (181)
Q Consensus 7 ~~~~~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~ 86 (181)
+..+..|.+|.+++|||+++++ |||||++|+.+.+++|+++||++++|+++++||+++.+.+ +++++|++++|+
T Consensus 12 ~~~~~~~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~iT~ 85 (193)
T 1yd9_A 12 TKSLFLGQKLQVVQADIASIDS----DAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKKN--GPLEVAGAAVSA 85 (193)
T ss_dssp EEECTTSCEEEEECSCGGGCCC----SEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH--CSCCTTCEEEEE
T ss_pred ccCcCCCCEEEEEeCccCcCcC----CEEEECCCccCCCCchHHHHHHHHhhHHHHHHHHHHHHHc--CCCCCCCEEEec
Confidence 3455679999999999999976 9999999999999999999999999999999999876432 479999999999
Q ss_pred CCCCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc----
Q 030214 87 GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN---- 154 (181)
Q Consensus 87 ~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~---- 154 (181)
+++|+|+||||+++|.|+.. .+.+.|++||++||++|.+++++|||||+||||+||+ |+++++ +|.
T Consensus 86 ~~~L~~k~VIH~vgP~~~~~-~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~-~~l~~~~ 163 (193)
T 1yd9_A 86 GHGLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAIS-SYFVSTM 163 (193)
T ss_dssp CTTSSSSEEEEECCCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHH-HHHTTCT
T ss_pred CCCCCCCEEEEeCCCCcCCc-chHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHH-HHHHhcC
Confidence 99999999999999999753 5788999999999999999999999999999999999 788888 884
Q ss_pred -CCCceEEEEEeCcchHHHHHHHHHh
Q 030214 155 -CGFLESFWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 155 -~~l~~V~~v~~~~~~~~~~~~~~~~ 179 (181)
+.+++|+||+|+++.+++|++.|++
T Consensus 164 ~~~l~~V~fv~~~~~~~~~~~~~l~~ 189 (193)
T 1yd9_A 164 SSSIKTVYFVLFDSESIGIYVQEMAK 189 (193)
T ss_dssp TCCCCEEEEECCSHHHHHHHHHHHTT
T ss_pred CCCcCEEEEEECCHHHHHHHHHHHHh
Confidence 2588999999999999999999875
No 5
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=2e-44 Score=280.81 Aligned_cols=160 Identities=35% Similarity=0.522 Sum_probs=146.4
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCC
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~ 92 (181)
+.+|.+++|||+++++ |||||++|+.+.+++|+++||++++|+++++||+++.+. .+.+++|++++|++++|++
T Consensus 2 ~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~e~~~~~~~--~g~~~~G~a~iT~~~~L~~ 75 (184)
T 1spv_A 2 KTRIHVVQGDITKLAV----DVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ--QGDCPTGHAVITLAGDLPA 75 (184)
T ss_dssp -CCEEEEESCGGGCCC----SEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHHHHHH--HCSCCTTCEEEECCTTSSS
T ss_pred CCeEEEEeCcCCcCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHh--cCCCCCCCEEEeeCCCCCC
Confidence 3569999999999976 999999999999999999999999999999999987543 2489999999999999999
Q ss_pred ceEEEeeCCccCCCC-ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc---CCCceE
Q 030214 93 SHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN---CGFLES 160 (181)
Q Consensus 93 k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~---~~l~~V 160 (181)
+||||+++|.|+++. .+.+.|++||++||++|.+++++|||||+||||++|+ |+++++ +|. +.+++|
T Consensus 76 k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~-~~l~~~~~~~~V 154 (184)
T 1spv_A 76 KAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVS-EFITRHALPEQV 154 (184)
T ss_dssp SEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHH-HHHHHCCSSSEE
T ss_pred CEEEEEcCCcccCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHH-HHHHhCCCCCEE
Confidence 999999999998765 5788999999999999999999999999999999999 778888 874 468899
Q ss_pred EEEEeCcchHHHHHHHHHh
Q 030214 161 FWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 161 ~~v~~~~~~~~~~~~~~~~ 179 (181)
+||+|+++.+++|++.++.
T Consensus 155 ~~v~~~~~~~~~~~~~l~~ 173 (184)
T 1spv_A 155 YFVCYDEENAHLYERLLTQ 173 (184)
T ss_dssp EEEESSHHHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHH
Confidence 9999999999999999875
No 6
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=100.00 E-value=5.3e-44 Score=277.83 Aligned_cols=149 Identities=23% Similarity=0.260 Sum_probs=140.6
Q ss_pred cCCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCC
Q 030214 11 STKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKL 90 (181)
Q Consensus 11 ~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L 90 (181)
.++.+|++++|||+++++ |||||++|+.+.+++|+++||++++|+++++||+++. ++++|++++|++|+|
T Consensus 19 ig~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGV~~aI~~aaG~~l~~ec~~~~------~~~~G~a~iT~~~~L 88 (183)
T 4abl_A 19 IGSIIFQVASGDITKEEA----DVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQQA------QQRKNDYIITGGGFL 88 (183)
T ss_dssp ETTEEEEEEESCGGGCBC----SEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHH------HHSCCSEEEEECTTS
T ss_pred ECCEEEEEEeCcccCccc----CEEEECCCCCCCCCccHHHHHHHHhhHHHHHHHHHhc------CCCCCceEEecCCCC
Confidence 578999999999999877 9999999999999999999999999999999999875 688999999999999
Q ss_pred CCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc-----CCC
Q 030214 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN-----CGF 157 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~-----~~l 157 (181)
+|+||||+++|.| |++||++||+.|++++++|||||+||||++|+ |+++++ +|. +.+
T Consensus 89 ~~k~VIH~vgP~~---------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~-~fl~~~~~~~l 158 (183)
T 4abl_A 89 RCKNIIHVIGGND---------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIE-DFVQKGSAQSV 158 (183)
T ss_dssp BSSEEEEEETTSC---------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHH-HHHHTTCCSSC
T ss_pred CCCEEEEeCcHHH---------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHH-HHHHhcCCCCC
Confidence 9999999999986 99999999999999999999999999999999 888898 883 358
Q ss_pred ceEEEEEeCcchHHHHHHHHHh
Q 030214 158 LESFWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 158 ~~V~~v~~~~~~~~~~~~~~~~ 179 (181)
++|+||+|++++++.|.+.+++
T Consensus 159 ~~V~fv~f~~~~~~~f~~~l~k 180 (183)
T 4abl_A 159 KKVKVVIFLPQVLDVFYANMKK 180 (183)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHh
Confidence 8999999999999999999875
No 7
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-43 Score=283.57 Aligned_cols=156 Identities=31% Similarity=0.440 Sum_probs=144.8
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCC
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~ 92 (181)
|.+|.|++|||+++++ |||||+||+.+.+|+|+++||++++|+++++||+++. .+++|++++|++|+|+|
T Consensus 61 ~~~i~i~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~g------~~~~G~a~iT~~~~L~~ 130 (235)
T 2x47_A 61 NEKISLLRSDITKLEV----DAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQ------SCKTGKAKITGGYRLPA 130 (235)
T ss_dssp HTTEEEEESCGGGEES----SEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHTSC------CCCBTCEEEEECTTSSS
T ss_pred CCEEEEEeCccCcccC----CEEEEecCcccCCccHHHHHHHHHhCHHHHHHHHHhC------CCCCCceEEecCCCCCC
Confidence 6789999999999987 9999999999999999999999999999999998763 79999999999999999
Q ss_pred ceEEEeeCCccCCCC--ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc----CCCc
Q 030214 93 SHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN----CGFL 158 (181)
Q Consensus 93 k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~----~~l~ 158 (181)
+||||+|||.|+++. .+.+.|++||++||++|.+++++|||||+||||+||+ |+++++ +|. +.++
T Consensus 131 k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~-~fl~~~~~~l~ 209 (235)
T 2x47_A 131 KYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLR-EWLEQHKDKVD 209 (235)
T ss_dssp SEEEEEBCCCCTTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHH-HHHHHHGGGCS
T ss_pred CEEEEecCccccCCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHH-HHHHhCCCCCC
Confidence 999999999997642 5678999999999999999999999999999999999 788888 774 3588
Q ss_pred eEEEEEeCcchHHHHHHHHHh
Q 030214 159 ESFWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 159 ~V~~v~~~~~~~~~~~~~~~~ 179 (181)
+|+||+|+++++++|++.++.
T Consensus 210 ~V~fv~f~~~~~~~y~~~l~~ 230 (235)
T 2x47_A 210 RLIICVFLEKDEDIYRSRLPH 230 (235)
T ss_dssp EEEEEECSHHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 8
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=100.00 E-value=1.7e-42 Score=264.04 Aligned_cols=149 Identities=29% Similarity=0.372 Sum_probs=139.1
Q ss_pred EEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCCce
Q 030214 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (181)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~k~ 94 (181)
+|++++|||+++++ |+|||++|+.+.+|+|++++|++++|++++++|++.. ++++|++++|++++|+++|
T Consensus 3 ~i~i~~GDI~~~~~----daIVnaaN~~l~~ggGv~~aI~~~~G~~l~~~c~~~g------~~~~G~a~it~~~~L~~~~ 72 (159)
T 2dx6_A 3 RIRVVQGDITEFQG----DAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG------KIRVGEAAVTGAGNLPVRY 72 (159)
T ss_dssp EEEEEESCGGGCCS----SEEEEEEETTCCCCSTTHHHHHHHHCTHHHHHHHHHC------CCCTTCEEEEECTTSSSSE
T ss_pred EEEEEECcCCcCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHhcC------CCCCCcEEEecCCCCCCCE
Confidence 68999999999876 9999999999999999999999999999999999753 7999999999999999999
Q ss_pred EEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhcCCCceEEEEEeC
Q 030214 95 VIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTNCGFLESFWVELS 166 (181)
Q Consensus 95 IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~~~l~~V~~v~~~ 166 (181)
|||+++|.|+ . .+.+.|++||++||+.|.+++++|||||+||||++|+ ++++++ +| +++++|+||+|+
T Consensus 73 Vih~vgp~~~-~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~-~~-~~~~~V~~v~~~ 148 (159)
T 2dx6_A 73 VIHAAVLGDE-P-ASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIK-KA-PDTLEVTLYGYR 148 (159)
T ss_dssp EEEEEEESSS-C-CCHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHT-TS-CTTCEEEEEESS
T ss_pred EEEEeCCCCC-C-chHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHH-hc-CCCCEEEEEECC
Confidence 9999999998 3 4688999999999999999999999999999999999 777888 88 778999999999
Q ss_pred cchHHHHHHHH
Q 030214 167 AKVTTYDMDLI 177 (181)
Q Consensus 167 ~~~~~~~~~~~ 177 (181)
++.++.|++.|
T Consensus 149 ~~~~~~~~~~l 159 (159)
T 2dx6_A 149 EEDAEAIRRAL 159 (159)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998764
No 9
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=100.00 E-value=6.4e-42 Score=268.96 Aligned_cols=149 Identities=22% Similarity=0.258 Sum_probs=139.7
Q ss_pred cCCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCC
Q 030214 11 STKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKL 90 (181)
Q Consensus 11 ~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L 90 (181)
.++.+|++++|||+++++ |||||++|+.+.+++|+++||++++|+++++||+++. .+++|++++|++++|
T Consensus 30 i~~~~i~i~~GDIt~~~v----DaIVNaaN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~------~~~~G~a~iT~g~~L 99 (199)
T 3kh6_A 30 IGAITFQVATGDIATEQV----DVIVNSTARTFNRKSGVSRAILEGAGQAVESECAVLA------AQPHRDFIITPGGCL 99 (199)
T ss_dssp ETTEEEEEEESCGGGCCS----SEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHH------TSCCCSSEEEECTTS
T ss_pred ECCEEEEEEecccccCcC----CEEEECCCCCCCCCchHHHHHHHHhhHHHHHHHHHhC------CCCCCeEEEecCCCC
Confidence 578999999999999876 9999999999999999999999999999999999875 689999999999999
Q ss_pred CCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhc-----CCC
Q 030214 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTN-----CGF 157 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~-----~~l 157 (181)
+|+||||+++|. .|++||++||+.|++++++|||||+||||++|+ |+++++ +|. +.+
T Consensus 100 ~~k~VIH~vgp~---------~L~~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~-~fl~~~~~~~l 169 (199)
T 3kh6_A 100 KCKIIIHVPGGK---------DVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIV-DFSSQHSTPSL 169 (199)
T ss_dssp SSSEEEEEETTS---------CHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHH-HHHHHCSSCSC
T ss_pred CCCEEEEeCCCH---------HHHHHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHH-HHHHhcCCCCC
Confidence 999999999995 499999999999999999999999999999999 788888 883 358
Q ss_pred ceEEEEEeCcchHHHHHHHHHh
Q 030214 158 LESFWVELSAKVTTYDMDLIET 179 (181)
Q Consensus 158 ~~V~~v~~~~~~~~~~~~~~~~ 179 (181)
++|+||+|+++++++|++.+++
T Consensus 170 ~~V~fv~f~~~~~~~f~~~l~~ 191 (199)
T 3kh6_A 170 KTVKVVIFQPELLNIFYDSMKK 191 (199)
T ss_dssp CEEEEEESSTHHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHh
Confidence 8999999999999999999875
No 10
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=100.00 E-value=4.6e-42 Score=272.51 Aligned_cols=164 Identities=27% Similarity=0.341 Sum_probs=147.2
Q ss_pred ecCCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhC----hhHHHHHhhccccCCCCCCCCCcEEEe
Q 030214 10 FSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAG----PDLQKACYQIPEAQPRVRCPPGEARIT 85 (181)
Q Consensus 10 ~~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G----~~l~~e~~~~~~~~~~~~l~~G~~~~t 85 (181)
..++.+|.+++|||+++++ |||||++|+.+.+++|+++||++++| ++++++|+++.+..+..++++|++++|
T Consensus 17 ~~~~~~i~i~~GDIt~~~v----DaIVNaaN~~l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~~~G~a~iT 92 (211)
T 1vhu_A 17 KVGDITLKLAQGDITQYPA----KAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVT 92 (211)
T ss_dssp EETTEEEEEEESCGGGSCC----SEEEEEECTTCCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCTTCCEEE
T ss_pred eECCEEEEEEecccCcCCC----CEEEECCCccccCccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCcccCCcEEEE
Confidence 3578899999999999976 99999999999999999999999999 999999998664322112999999999
Q ss_pred cCCCCCC---ceEEEeeCC----ccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHh
Q 030214 86 PGFKLPV---SHVIHTVGP----VFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIK 150 (181)
Q Consensus 86 ~~~~L~~---k~IiH~v~P----~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~ 150 (181)
++++|++ +||||+++| .|++ .+.+.|++||++||++|.+++++|||||+||||++|+ |+++++
T Consensus 93 ~~~~L~~~g~k~VIH~vgP~~~~~~~~--~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~ 170 (211)
T 1vhu_A 93 PAMNLEERGIKYVFHTVGPICSGMWSE--ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVK 170 (211)
T ss_dssp ECGGGGGGTCCEEEEEECCCCTTCCCH--HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHH
T ss_pred ECCCCCccCcCEEEEecCCccccccCc--chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999999 999999999 9954 5678999999999999999999999999999999999 778888
Q ss_pred hhhcC-CCceEEEEEeCcchHHHHHHHHHhh
Q 030214 151 LQTNC-GFLESFWVELSAKVTTYDMDLIETA 180 (181)
Q Consensus 151 ~~f~~-~l~~V~~v~~~~~~~~~~~~~~~~~ 180 (181)
+|.. .+++|+||+|+++.++.|++.++..
T Consensus 171 -~~l~~~l~~V~~v~~~~~~~~~~~~~l~~~ 200 (211)
T 1vhu_A 171 -NFKGSAVKEVALVIYDRKSAEVALKVFERS 200 (211)
T ss_dssp -HCCCSSCCEEEEEESSHHHHHHHHHHHHHH
T ss_pred -HHHhCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence 8852 2789999999999999999998753
No 11
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=100.00 E-value=4.6e-42 Score=263.42 Aligned_cols=147 Identities=20% Similarity=0.203 Sum_probs=131.7
Q ss_pred CcEEEEEecccee----eccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCC
Q 030214 13 KTSLKISKGDISR----WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGF 88 (181)
Q Consensus 13 ~~~i~i~~GdI~~----~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~ 88 (181)
..+|.+++|||++ +++ |||||+||++|.+++|+++||++++|++|++||+++++.+ +++++|++++|++|
T Consensus 9 ~~~i~l~~GDIt~~~~~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~iT~g~ 82 (168)
T 3eti_A 9 AGKVSFYQGDLDVLINFLEP----DVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSS--KAIAPGNAVLFENV 82 (168)
T ss_dssp ETTEEEEESCHHHHHHHHCC----SEEEEEECTTCCCCSTTHHHHHHHTTTHHHHHHHHHHTTS--CCCCTTEEEEEEEE
T ss_pred CCeEEEEeCcccccCCCCCC----CEEEeCCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCEEEecCC
Confidence 3569999999999 666 9999999999999999999999999999999999987533 58999999999999
Q ss_pred CCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhcCCCceE
Q 030214 89 KLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTNCGFLES 160 (181)
Q Consensus 89 ~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~~~l~~V 160 (181)
|+++||||+|||.|+.. .+.+.|++||++||++ .+|||||+||||+||| ++++++ + ++|
T Consensus 83 -l~~~~VIHtVgP~~~~~-~~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~P~~~aa~i~~~~v~-~-----~~V 149 (168)
T 3eti_A 83 -LEHLSVMNAVGPRNGDS-RVEGKLCNVYKAIAKC-----DGKILTPLISVGIFKVKLEVSLQCLLKTVT-D-----RDL 149 (168)
T ss_dssp -ETTEEEEEEECCCTTST-THHHHHHHHHHHHHTS-----CSCEEECCTTBSTTCBCHHHHHHHHHHHCC-S-----SCE
T ss_pred -CCccEEEEecCCCCCcc-hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHh-c-----CeE
Confidence 99999999999999764 5688999999999985 3899999999999999 444554 2 899
Q ss_pred EEEEeCcchHHHHHHHHH
Q 030214 161 FWVELSAKVTTYDMDLIE 178 (181)
Q Consensus 161 ~~v~~~~~~~~~~~~~~~ 178 (181)
+||+|++++++.|+++|.
T Consensus 150 ~~v~f~~~~~~~~~~~l~ 167 (168)
T 3eti_A 150 NVFVYTDQERVTIENFFN 167 (168)
T ss_dssp EEEECCHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHHHhc
Confidence 999999999999999874
No 12
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=100.00 E-value=2.4e-40 Score=253.73 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=130.2
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCC
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~ 92 (181)
+.+|.+++|||+++++ |||||+||+.|.+++|++++|++++|++++ .+.+++|++++|+++ +
T Consensus 3 ~~~i~v~~GDIt~~~v----DAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~~---~ 64 (168)
T 3gqe_A 3 APSYHVVRGDIATATE----GVIINAANSKGQPGGGVCGALYKKFPESFD-----------LQPIEVGKARLVKGA---A 64 (168)
T ss_dssp CCEEEEEESCGGGCCS----SEEEEEECTTSCCTTGGGSHHHHHCGGGCC-----------CCCCCTTCEEEECCT---T
T ss_pred CCeEEEEeCcccCccc----CEEEeCCCcccCCCccHHHHHHHHhhHHhc-----------CCCcCCCcEEEEcCC---C
Confidence 5689999999999876 999999999999999999999999999753 248999999999984 9
Q ss_pred ceEEEeeCCccCCCC--ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH----HHHHHhhhh----cCCCceEEE
Q 030214 93 SHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI----MTHAIKLQT----NCGFLESFW 162 (181)
Q Consensus 93 k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~----~~~~i~~~f----~~~l~~V~~ 162 (181)
+||||+|||.|+++. .+.+.|++||++||++|++++++|||||+||||+||| +.++++ +| .+.+++|+|
T Consensus 65 k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~-~~l~~~~~~~~~V~i 143 (168)
T 3gqe_A 65 KHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLN-HLLTALDTTDADVAI 143 (168)
T ss_dssp CCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHH-HHHHHHTTSCCEEEE
T ss_pred CEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHH-HHHHHCCCCCCeEEE
Confidence 999999999999875 3357999999999999999999999999999999999 444444 33 456789999
Q ss_pred EEeCcchHHHHHHHHH
Q 030214 163 VELSAKVTTYDMDLIE 178 (181)
Q Consensus 163 v~~~~~~~~~~~~~~~ 178 (181)
|+||+++++.|++++-
T Consensus 144 v~fd~~~~~~~~~~~~ 159 (168)
T 3gqe_A 144 YCRDKKWEMTLKEAVA 159 (168)
T ss_dssp EESCHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHH
Confidence 9999999999999874
No 13
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=100.00 E-value=1e-40 Score=255.68 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=129.6
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCC
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~ 92 (181)
.....+++|||+++++ |||||+||+.|.+++|+++||++++|++++ .+++++|++++|+++ +
T Consensus 9 ~~~~~~~~GDIt~~~v----DAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~~---~ 70 (168)
T 3gpg_A 9 APSYRVKRMDIAKNDE----ECVVNAANPRGLPGDGVCKAVYKKWPESFK-----------NSATPVGTAKTVMCG---T 70 (168)
T ss_dssp CCCC-CEESCGGGCCS----SCEEEECCTTCCCCSHHHHHHHHHCGGGGT-----------TCCCCTTCEEEEEET---T
T ss_pred CCceEEEeCcCCcccC----CEEEeCCCcccCCCchHHHHHHHHhhHHhh-----------cCCCCCCCEEEecCC---C
Confidence 4557889999999877 999999999999999999999999999763 248999999999995 9
Q ss_pred ceEEEeeCCccCCCC--ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH-------HHHHHhhhhc-CCCceEEE
Q 030214 93 SHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI-------MTHAIKLQTN-CGFLESFW 162 (181)
Q Consensus 93 k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~-------~~~~i~~~f~-~~l~~V~~ 162 (181)
+||||+|||.|+++. .+.+.|++||++||++|++++++|||||+||||+||| ++++++ +|. +.+++|+|
T Consensus 71 k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~ai~~v~-~~~~~~~~~V~f 149 (168)
T 3gpg_A 71 YPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQSLNHLF-TAMDSTDADVVI 149 (168)
T ss_dssp EEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHHHC-CHH-HHHTTCCSEEEE
T ss_pred CEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHHHHHHHH-HhccCCCCEEEE
Confidence 999999999999875 2357999999999999999999999999999999999 344444 554 45889999
Q ss_pred EEeCcchHHHHHHHHHh
Q 030214 163 VELSAKVTTYDMDLIET 179 (181)
Q Consensus 163 v~~~~~~~~~~~~~~~~ 179 (181)
|+|++++++.|++.|+.
T Consensus 150 v~f~~~~~~~y~~~l~~ 166 (168)
T 3gpg_A 150 YCRDKEWEKKISEAIQM 166 (168)
T ss_dssp EESCHHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHhc
Confidence 99999999999999874
No 14
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=100.00 E-value=6.3e-40 Score=255.85 Aligned_cols=144 Identities=21% Similarity=0.215 Sum_probs=128.3
Q ss_pred CcEEEEEecccee----eccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCC
Q 030214 13 KTSLKISKGDISR----WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGF 88 (181)
Q Consensus 13 ~~~i~i~~GdI~~----~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~ 88 (181)
+.+|.+++|||++ +++ |||||+||+.|.+++|+++||++++|++|++||+++++.+ +++++|++++|+++
T Consensus 37 ~~~i~l~~GDIt~~~~~~~v----DAIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~l~~~~--g~~~~G~a~iT~~~ 110 (193)
T 3ejg_A 37 HDNVAFYQGDVDTVVNGVDF----DFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLA--GKVKVGTGVMVECD 110 (193)
T ss_dssp ETTEEEEECCHHHHHHHCCC----SEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHH--CSCCTTCEEEEEET
T ss_pred CCeEEEEeCcccccCcCCCc----CEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHHc--CCCCCCCEEEecCC
Confidence 5669999999999 555 9999999999999999999999999999999999876432 48999999999999
Q ss_pred CCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhcCCCceE
Q 030214 89 KLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTNCGFLES 160 (181)
Q Consensus 89 ~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~~~l~~V 160 (181)
+| +|||+|||.|+. .+.+.|++||++||++ .+|||||+||||+||| ++++++ + ++|
T Consensus 111 ~L---~VIHtVGP~~~~--~~~~~L~~~y~~~L~~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~-~-----~~V 174 (193)
T 3ejg_A 111 SL---RIFNVVGPRKGK--HERDLLIKAYNTINNE-----QGTPLTPILSCGIFGIKLETSLEVLLDVCN-T-----KEV 174 (193)
T ss_dssp TE---EEEEEECCCSST--THHHHHHHHHHHHHHS-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCC-S-----SCE
T ss_pred Ce---eEEEecCCCCCc--hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHh-c-----CeE
Confidence 99 999999999965 5788999999999983 3799999999999999 444554 3 599
Q ss_pred EEEEeCcchHHHHHHHHH
Q 030214 161 FWVELSAKVTTYDMDLIE 178 (181)
Q Consensus 161 ~~v~~~~~~~~~~~~~~~ 178 (181)
+||+|+++++++|++.|.
T Consensus 175 ~fv~f~~~~~~~~~~~l~ 192 (193)
T 3ejg_A 175 KVFVYTDTEVCKVKDFVS 192 (193)
T ss_dssp EEEECSHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHHHhc
Confidence 999999999999999875
No 15
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=100.00 E-value=3.5e-39 Score=248.62 Aligned_cols=157 Identities=23% Similarity=0.233 Sum_probs=130.2
Q ss_pred eeEEecCCcEEEEEeccceeeccCC----CCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCc
Q 030214 6 QTLSFSTKTSLKISKGDISRWCVDR----SSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGE 81 (181)
Q Consensus 6 ~~~~~~~~~~i~i~~GdI~~~~~~~----~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~ 81 (181)
.+.+...+..|++++||||++++|. ++|||||+||++|.+++|+++||++++|++|++||+++++.+ ++++
T Consensus 6 ~~~~~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~--- 80 (176)
T 3ejf_A 6 ATCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKH--GPQQ--- 80 (176)
T ss_dssp ----CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCCCCSHHHHHHHHHHCHHHHHHHHHHHHHH--CCCS---
T ss_pred ccccCCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHhc--CCCC---
Confidence 3556788999999999999998742 568899999999999999999999999999999999886533 3565
Q ss_pred EEEecCCCCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhh
Q 030214 82 ARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQT 153 (181)
Q Consensus 82 ~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f 153 (181)
+++|+++.+++++|||+|||.|... ++++.|++||++||+ ++++|||||+||||+||| ++++++
T Consensus 81 a~iT~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~--- 152 (176)
T 3ejf_A 81 RLVTPSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFE--- 152 (176)
T ss_dssp EEEECCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHT---
T ss_pred eeecccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHHHH----cCCcEEEECccccCCCCCCHHHHHHHHHHHhh---
Confidence 8999999999999999999999654 578899999999998 999999999999999999 445554
Q ss_pred cCCCceEEEEEe--CcchHHHHHHHHH
Q 030214 154 NCGFLESFWVEL--SAKVTTYDMDLIE 178 (181)
Q Consensus 154 ~~~l~~V~~v~~--~~~~~~~~~~~~~ 178 (181)
. ++|+|++| |++.+++|..+++
T Consensus 153 -~--~~v~v~~~~~D~e~~~~~~~~~~ 176 (176)
T 3ejf_A 153 -G--CTIRVLLFSLSQEHIDYFDVTCK 176 (176)
T ss_dssp -T--CCCEEEEEESCHHHHHHHHHTC-
T ss_pred -h--cceEEEEEcCCHHHHHHHHHHhC
Confidence 3 34555555 5888888887653
No 16
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=100.00 E-value=5.4e-39 Score=249.35 Aligned_cols=150 Identities=20% Similarity=0.254 Sum_probs=125.3
Q ss_pred EecCCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCC
Q 030214 9 SFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGF 88 (181)
Q Consensus 9 ~~~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~ 88 (181)
...-+.+|.+++|||+++..+.++|||||+||+.+.+++|+++||++++|++|++||+++.+.+ +++++|++++|+++
T Consensus 15 ~~~~~~~i~i~~GDIt~~~~~~~vDAIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~iT~~~ 92 (182)
T 2acf_A 15 YLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLN--GPLTVGGSCLLSGH 92 (182)
T ss_dssp CEECSSSEEEEESCHHHHHHHHCCSEEEEECCTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHH--CCCCTTCEEEEECT
T ss_pred ccccCCeEEEEeCcccccccCCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHHc--CCCCCCcEEEeeCC
Confidence 3344778999999999992111239999999999999999999999999999999999876432 48999999999999
Q ss_pred CCCCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH--------HHHHHhhhhcCCCceE
Q 030214 89 KLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI--------MTHAIKLQTNCGFLES 160 (181)
Q Consensus 89 ~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~--------~~~~i~~~f~~~l~~V 160 (181)
+|+ ++|||++||.|+.+ .+.+.|++||+++ ++++|||||+||||+||+ ++++++ ++|
T Consensus 93 ~L~-~~VIH~vgP~~~~~-~~~~~L~~~y~~~------~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~-------~~V 157 (182)
T 2acf_A 93 NLA-KKCLHVVGPNLNAG-EDIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVR-------TQV 157 (182)
T ss_dssp TTC-SEEEEECCCCGGGT-CCTTHHHHHHHGG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCC-------SEE
T ss_pred CCC-ceEEEECCCCCCCC-chHHHHHHHHHHh------cCCCEEEECCcccCCCCCCHHHHHHHHHHHHh-------CcE
Confidence 995 79999999999865 3567999999986 789999999999999999 333333 299
Q ss_pred EEEEeCcchHHHHHH
Q 030214 161 FWVELSAKVTTYDMD 175 (181)
Q Consensus 161 ~~v~~~~~~~~~~~~ 175 (181)
+||+||++.|+.+.+
T Consensus 158 ~~v~~d~~~y~~~l~ 172 (182)
T 2acf_A 158 YIAVNDKALYEQVVM 172 (182)
T ss_dssp EEEESCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHH
Confidence 999999986655443
No 17
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=100.00 E-value=3.2e-38 Score=243.63 Aligned_cols=153 Identities=24% Similarity=0.227 Sum_probs=129.3
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCC
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~ 92 (181)
+.+|.+++|||+++..+.++|||||+||+++.+++|+++||++++|+++++||+++.+. .+++++|++++|++++|
T Consensus 16 ~~~i~i~~GDIt~~~~~~~~DaIVNaaN~~l~~ggGv~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~~l-- 91 (174)
T 2vri_A 16 YKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISS--NGPLKVGAGVMLECEKF-- 91 (174)
T ss_dssp ETTEEEEESCHHHHTTTSCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHH--HCSCCTTCEEEEECSSC--
T ss_pred CCeEEEEeccccccccCCCccEEEECCCccCCCCCcHhHHHHHHhhHHHHHHHHHHHHh--cCCCCCCeEEEEECCCC--
Confidence 56799999999998322345999999999999999999999999999999999987643 24899999999999998
Q ss_pred ceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH----HHHHHhhhhcCCCceEEEEEeCcc
Q 030214 93 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI----MTHAIKLQTNCGFLESFWVELSAK 168 (181)
Q Consensus 93 k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~----~~~~i~~~f~~~l~~V~~v~~~~~ 168 (181)
||||+++|.|... +.+.|++||++||++ .+|||||+||||++|+ +.+.+. +-..+ ++|+|++|+++
T Consensus 92 -~VIH~vgP~~~~~--~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~p~~~aa~i~~-~~v~~-~~V~~v~f~~~ 161 (174)
T 2vri_A 92 -NVFNVVGPRTGKH--EHSLLVEAYNSILFE-----NGIPLMPLLSCGIFGVRIENSLKALF-SCDIN-KPLQVFVYSSN 161 (174)
T ss_dssp -EEEEEECCCSSTT--HHHHHHHHHHHHHHS-----SSCEEEECSSCGGGCCCHHHHHHHHH-TSCCC-SCEEEEECSHH
T ss_pred -EEEEEcCCCCCcc--hHHHHHHHHHHHHhh-----CCcEEeCccccCCCCCCHHHHHHHHH-HHHhh-CcEEEEEcCHH
Confidence 9999999999643 788999999999985 3499999999999999 222222 21122 68999999999
Q ss_pred hHHHHHHHHHh
Q 030214 169 VTTYDMDLIET 179 (181)
Q Consensus 169 ~~~~~~~~~~~ 179 (181)
.+++|++.|++
T Consensus 162 ~~~~~~~~l~~ 172 (174)
T 2vri_A 162 EEQAVLKFLDG 172 (174)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 18
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=100.00 E-value=6.3e-36 Score=245.88 Aligned_cols=155 Identities=19% Similarity=0.113 Sum_probs=127.4
Q ss_pred CcEEEEEeccceee--------c-cCCCCcEEEEccCCCCCCCchHHHHHHHHhC-hhHHHHHhhccccCCCCCCCCCcE
Q 030214 13 KTSLKISKGDISRW--------C-VDRSSDAIVSPTNEILLLGGFTAAAIHEAAG-PDLQKACYQIPEAQPRVRCPPGEA 82 (181)
Q Consensus 13 ~~~i~i~~GdI~~~--------~-~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G-~~l~~e~~~~~~~~~~~~l~~G~~ 82 (181)
+.+|.+++|||+++ . +++++||||||||+.+.+|||+++||++++| +.++++|++..+ .+.+++|++
T Consensus 44 ~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~~gGGVd~AI~raaGg~~l~~ec~~~~~---~g~~~~G~a 120 (284)
T 1njr_A 44 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLG---GRYHTVGSA 120 (284)
T ss_dssp -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCCCCSSHHHHHHHHHTSHHHHHHHHHHTT---TSCCCTTCC
T ss_pred CCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCCCCchHHHHHHHhhCcHHHHHHHHHHHh---cCCCCCCeE
Confidence 56899999999998 1 1123499999999999999999999999975 678999998763 347999999
Q ss_pred EEecCC----------CCCCceEEEeeCCccCCCC---------ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhH
Q 030214 83 RITPGF----------KLPVSHVIHTVGPVFNFHC---------NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 143 (181)
Q Consensus 83 ~~t~~~----------~L~~k~IiH~v~P~~~~~~---------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g 143 (181)
++|+++ +|+|+||||++||.|.++. .+.+.|++||++||+.| +++++|||||+||||+||
T Consensus 121 ~iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G 199 (284)
T 1njr_A 121 TVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAG 199 (284)
T ss_dssp EEEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTC
T ss_pred EEEECCcccccccchhcCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCC
Confidence 999999 9999999999999998652 14589999999999999 999999999999999999
Q ss_pred H--------HHHHHhhhhcCC------C-ceEEEEEeCcchHHHH
Q 030214 144 I--------MTHAIKLQTNCG------F-LESFWVELSAKVTTYD 173 (181)
Q Consensus 144 ~--------~~~~i~~~f~~~------l-~~V~~v~~~~~~~~~~ 173 (181)
+ |+++++ +|... + +.|.||.+ ++.|+.|
T Consensus 200 ~P~~~aA~i~~~av~-~f~~~~~~s~~~~~~vi~~~~-~~~~~~~ 242 (284)
T 1njr_A 200 VPPIISCKSMAFALR-LYMAGDHISKELKNVLIMYYL-QYPFEPF 242 (284)
T ss_dssp CCHHHHHHHHHHHHH-HHHTGGGSCHHHHHHHHHHHT-TCCCGGG
T ss_pred CCHHHHHHHHHHHHH-HHHHhCCcccccceEEEEEEC-HHHHHHH
Confidence 9 788888 88532 2 34666666 4444443
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=100.00 E-value=1.2e-34 Score=252.02 Aligned_cols=147 Identities=21% Similarity=0.236 Sum_probs=130.6
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCC
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~ 92 (181)
-..++|++|||++.++ |||||+||+++.+|+||++||++++|+++.+ +.+++|++++|+++ .
T Consensus 343 APsfrIIRgDITk~~v----DAIVNAANtsL~gGgGVdGAIhraaG~~ll~-----------~~~~tG~AkIT~g~---a 404 (670)
T 4gua_A 343 APSYRTKRENIADCQE----EAVVNAANPLGRPGEGVCRAIYKRWPTSFTD-----------SATETGTARMTVCL---G 404 (670)
T ss_dssp CCCEEEECSCGGGCCS----SEEEEECCTTCCCCSSHHHHHHHHCGGGGTT-----------CCCCTTCEEEEEET---T
T ss_pred CcceeEEecccccccc----CEEEeCCCCCCCCcCCHhHHHHHHhhHHHhc-----------CCCCcceEEEecCC---C
Confidence 3468999999999987 9999999999999999999999999998764 26789999999999 6
Q ss_pred ceEEEeeCCccCCCCCh--HHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH-------HHHHHhhhhcCCC-ceEEE
Q 030214 93 SHVIHTVGPVFNFHCNP--EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI-------MTHAIKLQTNCGF-LESFW 162 (181)
Q Consensus 93 k~IiH~v~P~~~~~~~~--~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~-------~~~~i~~~f~~~l-~~V~~ 162 (181)
|||||+|||.|+++... .++|++||+++|++|.+++++|||||+||||+||+ +++++. +|...- -+|++
T Consensus 405 KyIIHtVGPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKdal~IAl~~I~-~fL~~~D~dV~I 483 (670)
T 4gua_A 405 KKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKDRLEVSLNCLT-TALDRTDADVTI 483 (670)
T ss_dssp EEEEEECCCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSCCHHHHHHHHH-HHHTTSSCEEEE
T ss_pred ceEEEcCCCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHHHHHHHHHHHH-HHHhccCCEEEE
Confidence 99999999999998732 36899999999999999999999999999999999 777887 886554 48999
Q ss_pred EEeCcchHHHHHHHHH
Q 030214 163 VELSAKVTTYDMDLIE 178 (181)
Q Consensus 163 v~~~~~~~~~~~~~~~ 178 (181)
|+||++..+.+++.+.
T Consensus 484 vcfDKkwe~~Ik~ai~ 499 (670)
T 4gua_A 484 YCLDKKWKERIDAALQ 499 (670)
T ss_dssp ECSCHHHHHHHHHHHH
T ss_pred EEecChHHHHHHHHHH
Confidence 9999998887777654
No 20
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.96 E-value=1.2e-28 Score=187.74 Aligned_cols=139 Identities=13% Similarity=0.133 Sum_probs=114.8
Q ss_pred ecCCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCC
Q 030214 10 FSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFK 89 (181)
Q Consensus 10 ~~~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~ 89 (181)
+.++.+|++++|||++.+ .+|+|||++|+.+.+|+|++++|++++| ++ .+|++. .+++|++++|+++
T Consensus 16 ~~~~~~i~~v~GDIt~~~---~~daIVnaaN~~~~~GgGVa~ai~~~~p-~~-~e~~~~-------~~~~G~a~it~~~- 82 (160)
T 2jyc_A 16 DPEGSRITYVKGDLFACP---KTDSLAHCISEDCRMGAGIAVLFKKKFG-GV-QELLNQ-------QKKSGEVAVLKRD- 82 (160)
T ss_dssp CCCSCSEEEEESCSSSSC---SSCEEEEEECTTCCCCSSTHHHHHHHHC-CH-HHHHHH-------CCCTTCEEEEEET-
T ss_pred cCCCceEEEEeCcCCCCC---CCCEEEEccCCcCCCCCcHHHHHHHHCh-HH-HHHhcc-------CCCCCcEEEEecC-
Confidence 346889999999999875 1399999999999999999999999995 45 567652 6889999999985
Q ss_pred CCCceEEEeeCCc-cCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH----HHHHHhhhhcCCCceEEEEE
Q 030214 90 LPVSHVIHTVGPV-FNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI----MTHAIKLQTNCGFLESFWVE 164 (181)
Q Consensus 90 L~~k~IiH~v~P~-~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~----~~~~i~~~f~~~l~~V~~v~ 164 (181)
.+||||+++|. |.+ ..+.+.|++||+++++.|++++++|||||+||||++|+ +.+.+. ++.... +|.+++
T Consensus 83 --~~~Vih~vg~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~-~~~~~~-~i~v~V 157 (160)
T 2jyc_A 83 --GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIE-EVFEAT-DIKITV 157 (160)
T ss_dssp --TEEEEEEECSSSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHH-HHHTTS-CCEEEE
T ss_pred --CcEEEEEecCCCCCC-CChHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHH-HHHhhC-CCeEEE
Confidence 69999999998 655 45688999999999999999999999999999999999 333444 444333 466666
Q ss_pred eC
Q 030214 165 LS 166 (181)
Q Consensus 165 ~~ 166 (181)
|+
T Consensus 158 y~ 159 (160)
T 2jyc_A 158 YT 159 (160)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 21
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.96 E-value=1.7e-28 Score=184.84 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=113.6
Q ss_pred CCcEEEEEeccceeeccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCC
Q 030214 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 91 (181)
Q Consensus 12 ~~~~i~i~~GdI~~~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~ 91 (181)
++.+|++++|||++.+ .+|+|||++|+.+.+|+|++++|++++ |++ .+|++ +.+++|++++|+++
T Consensus 7 ~~~~i~~v~GDIt~~~---~~daIVnaaN~~~~~G~Gva~ai~~~~-p~~-~~~~~-------~~~~~G~a~it~~~--- 71 (149)
T 2eee_A 7 GGSRITYVKGDLFACP---KTDSLAHCISEDCRMGAGIAVLFKKKF-GGV-QELLN-------QQKKSGEVAVLKRD--- 71 (149)
T ss_dssp SSCCCEEECSCSSSSC---SSCEEEEEEETTCCCCSTTHHHHHHHT-CCH-HHHHT-------TCCCTTCEEEEESS---
T ss_pred CCeeEEEEecccccCC---CCcEEEEEeCCCCCcCCcHHHHHHHHC-cHH-HHHhc-------ccCCCccEEEEEcC---
Confidence 5778999999999975 139999999999999999999999999 555 56654 26889999999985
Q ss_pred CceEEEeeCCc-cCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH----HHHHHhhhhcCCCceEEEEEeC
Q 030214 92 VSHVIHTVGPV-FNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI----MTHAIKLQTNCGFLESFWVELS 166 (181)
Q Consensus 92 ~k~IiH~v~P~-~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~----~~~~i~~~f~~~l~~V~~v~~~ 166 (181)
.+||||+++|. |.. ..+.+.|++||+++++.|++++++|||||+||||++|+ +.+.+. ++..+. +|.+++|+
T Consensus 72 ~~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~-~~~~~~-~i~v~Vy~ 148 (149)
T 2eee_A 72 GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIE-EVFEAT-DIKITVYT 148 (149)
T ss_dssp SSEEEEEEEESSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHH-HHHTTC-CCEEEEEC
T ss_pred CCEEEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHH-HHhccC-CceEEEEe
Confidence 79999999998 755 45688999999999999999999999999999999999 333343 444333 46667764
No 22
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.94 E-value=6.7e-27 Score=177.65 Aligned_cols=140 Identities=19% Similarity=0.104 Sum_probs=111.8
Q ss_pred cEEEEEecccee---eccCCCCcEEEEccCCCCCCCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCC
Q 030214 14 TSLKISKGDISR---WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKL 90 (181)
Q Consensus 14 ~~i~i~~GdI~~---~~~~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L 90 (181)
.+|++++|||++ .++ |+|||++|+.+.+|+|++++|++++ |++.+++++..+. .+.+++|++++|+++
T Consensus 4 M~i~~v~GDit~~~~~~~----daIvn~~N~~~~~G~Gva~ai~~~~-p~~~~~~~~~~~~--~~~~~~G~~~i~~~~-- 74 (158)
T 2fg1_A 4 MEILYIKGDATAPIGSGV----KVITHICNDIGGWGKGFVLALSKKW-KMPEEAYRQWYKS--QEEFTLGAVQFVNVE-- 74 (158)
T ss_dssp CCCEEEESCTTSCCSSSC----EEEEEEEETTCCCCSTHHHHHHHHC-SHHHHHHHHHHHH--TSSCSTTCEEEEEEE--
T ss_pred eEEEEEecccCCCCCCCC----eEEEEEecCCCCcCccHHHHHHHHC-ChHHHHHHHHHhh--ccCcCCccEEEEecC--
Confidence 368999999999 544 9999999999999999999999999 7888777654432 237899999999984
Q ss_pred CCceEEEeeCCc-cCCCC-----ChHHHHHHHHHHHHHHHHhCCCcEEEecccccchhHH----HHHHHhhhhcCCCceE
Q 030214 91 PVSHVIHTVGPV-FNFHC-----NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQI----MTHAIKLQTNCGFLES 160 (181)
Q Consensus 91 ~~k~IiH~v~P~-~~~~~-----~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~tG~~g~----~~~~i~~~f~~~l~~V 160 (181)
+.+||||+++|. |..+. ...+.|++||+++++.|.+++. |||||.||||++|+ +.+.+. ++..++ +|
T Consensus 75 ~~~~Vi~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~-~~l~~~-~i 151 (158)
T 2fg1_A 75 NKLYVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIK-EELITK-EI 151 (158)
T ss_dssp TTEEEEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHH-HHTGGG-TC
T ss_pred CCeEEEEEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHH-HHhccC-Cc
Confidence 249999999998 76443 2688999999999999999997 99999999999999 333444 554433 34
Q ss_pred EEEEe
Q 030214 161 FWVEL 165 (181)
Q Consensus 161 ~~v~~ 165 (181)
.+++|
T Consensus 152 ~v~vy 156 (158)
T 2fg1_A 152 AVTVY 156 (158)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 44444
No 23
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=98.69 E-value=1.6e-08 Score=82.47 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=101.0
Q ss_pred CcEEEEEeccceeecc-----CCCCcEEEEccCCCCCCCchHHH------HHHHHhCh--hHHH--HHhhccccCCCCCC
Q 030214 13 KTSLKISKGDISRWCV-----DRSSDAIVSPTNEILLLGGFTAA------AIHEAAGP--DLQK--ACYQIPEAQPRVRC 77 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~-----~~~~DaIVn~an~~l~~~~gv~~------ai~~~~G~--~l~~--e~~~~~~~~~~~~l 77 (181)
..+|.|+.+|-.+.-. .+..-++.|.||..-..||=+.+ +|.+.-.- .|.. +.-..-.. ...++
T Consensus 64 ~t~i~V~~~dtl~aA~~L~~~~~~~v~vLNfAs~~~PGGG~~~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~~~-~~~~~ 142 (277)
T 3sig_A 64 PTRIEVTEETTLAAARRLTGAAGDQVACLNFASAEHPGGGFLSGAHAQEEGLARSSGLYASLRAVPQFYAFHHR-QRDPL 142 (277)
T ss_dssp -CEEEEESCCHHHHHHHHHHHCSSCCEEEEECCSSSTTTTGGGTCCSHHHHHHHHBSHHHHHTTCHHHHHHHHH-HCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHhcCCCeEEEecccccCCCCCcccCcchHHHHHHHhhhHHHHHhhhhhhhccccc-cCCCC
Confidence 4678888888653211 12346889999887655432222 22222210 1110 11100000 01234
Q ss_pred CCCcEEEecC--------CCC-CC---ceEEEeeCCccCCCC------ChHHHHHHHHHHHHHHHHhCCCcEEEeccccc
Q 030214 78 PPGEARITPG--------FKL-PV---SHVIHTVGPVFNFHC------NPEDILRSAYKNCLSVGKANNIQYIAFPAISC 139 (181)
Q Consensus 78 ~~G~~~~t~~--------~~L-~~---k~IiH~v~P~~~~~~------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l~t 139 (181)
....+++++. +.+ .- =-||.++.|.|..-. ...+.|++.++.+|..|.++|.++|++|++||
T Consensus 143 ~~~~~IySP~V~vfR~~~~~ll~~p~~v~vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GC 222 (277)
T 3sig_A 143 YSDHLIYSPGVPVFRDDAGRLLEEPYRVAFLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGC 222 (277)
T ss_dssp CCSCEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTS
T ss_pred CCCCeEECCCcEEEeCCCCccccCCceeEEEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 4445555542 222 11 237888888774311 23578999999999999999999999999999
Q ss_pred chhHH-------HHHHHhh---hhcCCCceEEEEEeCc----chHHHHHHHHHh
Q 030214 140 GVSQI-------MTHAIKL---QTNCGFLESFWVELSA----KVTTYDMDLIET 179 (181)
Q Consensus 140 G~~g~-------~~~~i~~---~f~~~l~~V~~v~~~~----~~~~~~~~~~~~ 179 (181)
|.||. ++..+.. +|...+++|.|.++|+ ..++.|++.|+.
T Consensus 223 Gvfgnpp~~VA~~~~~vL~~~~~f~~~f~~VvFAv~d~~~~~~n~~~F~~~F~~ 276 (277)
T 3sig_A 223 GVFGNDPAQVAETFAGLLLDGGPFAGRFAHVVFAVWDTAPGAPRHAAFARRFGS 276 (277)
T ss_dssp STTCCCHHHHHHHHHHHHSTTCTTTTTCSEEEEECCCCSTTCHHHHHHHHHC--
T ss_pred CcCCCCHHHHHHHHHHHHhhcchhcCCceEEEEEEecCCCcchHHHHHHHHHhh
Confidence 99999 3333321 3666789999999997 689999998863
No 24
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=50.30 E-value=19 Score=26.50 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=26.1
Q ss_pred CceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEe
Q 030214 92 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 134 (181)
++.|||+++|.|.... ..+.-....+++++.+.+.+.+.+.+
T Consensus 68 ~d~vi~~a~~~~~~~~-~~~~n~~~~~~l~~~~~~~~~~~~v~ 109 (227)
T 3dhn_A 68 ADAVISAFNPGWNNPD-IYDETIKVYLTIIDGVKKAGVNRFLM 109 (227)
T ss_dssp CSEEEECCCC-------CCSHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEeCcCCCCChh-HHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 6899999999865532 11122445677888888888877776
No 25
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=38.51 E-value=39 Score=24.58 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=30.4
Q ss_pred CCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEec
Q 030214 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P 135 (181)
.++.|||++++.|.... ...-....+++++.+.+.+ +.+.+.
T Consensus 62 ~~d~vi~~ag~~~~~~~--~~~n~~~~~~l~~a~~~~~-~~~v~~ 103 (224)
T 3h2s_A 62 SVDAVVDALSVPWGSGR--GYLHLDFATHLVSLLRNSD-TLAVFI 103 (224)
T ss_dssp TCSEEEECCCCCTTSSC--THHHHHHHHHHHHTCTTCC-CEEEEE
T ss_pred cCCEEEECCccCCCcch--hhHHHHHHHHHHHHHHHcC-CcEEEE
Confidence 47999999999876542 2344455688899888888 666654
No 26
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=34.77 E-value=78 Score=24.37 Aligned_cols=44 Identities=18% Similarity=0.053 Sum_probs=29.0
Q ss_pred CCceEEEeeCCccCCCC-ChHHHHHHHHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~ 134 (181)
.++.|||++++...... ...+.=-...+++++.|.+.+++.+.+
T Consensus 62 ~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~ 106 (311)
T 3m2p_A 62 DVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVY 106 (311)
T ss_dssp TCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 47999999987543321 122222344678888888889887765
No 27
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=24.88 E-value=1e+02 Score=22.07 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=28.8
Q ss_pred CCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 030214 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 136 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 136 (181)
.++.|||++++..... ..-....+++++.+.+.+.+.+.+..
T Consensus 61 ~~d~vi~~ag~~~~~~----~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 61 DQNVVVDAYGISPDEA----EKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp TCSEEEECCCSSTTTT----TSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred CCCEEEECCcCCcccc----chHHHHHHHHHHHHHhcCCceEEEEe
Confidence 3799999999854321 22345667888888888777777643
No 28
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=22.93 E-value=1.7e+02 Score=22.03 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=27.0
Q ss_pred CceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEec
Q 030214 92 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135 (181)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P 135 (181)
++.|||++++.... . .--...+++++.|.+.+.+.|.+-
T Consensus 66 ~d~vi~~a~~~~~~----~-~~~~~~~~l~~aa~~~gv~~iv~~ 104 (289)
T 3e48_A 66 MDTVVFIPSIIHPS----F-KRIPEVENLVYAAKQSGVAHIIFI 104 (289)
T ss_dssp CSEEEECCCCCCSH----H-HHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEeCCCCccc----h-hhHHHHHHHHHHHHHcCCCEEEEE
Confidence 68999998875321 1 123455788888888898877763
No 29
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=22.77 E-value=78 Score=20.85 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=28.4
Q ss_pred CCceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 030214 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNI 129 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~ 129 (181)
+.+|+|-+.+|++.. .++.|+++...+....+++|-
T Consensus 51 aP~Y~i~~~~~D~k~---ge~~L~~ai~~i~~~i~~~gG 86 (93)
T 2qn6_B 51 APRYRVDVVGTNPKE---ASEALNQIISNLIKIGKEENV 86 (93)
T ss_dssp TTEEEEEEEESCHHH---HHHHHHHHHHHHHHHHHHTTE
T ss_pred CCeEEEEEEecCHHH---HHHHHHHHHHHHHHHHHHhCC
Confidence 578999999998754 467888888888888777654
No 30
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=21.91 E-value=1.1e+02 Score=23.89 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=27.6
Q ss_pred CCceEEEeeCCccCCCCChHHHHH---HHHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~sIa~ 134 (181)
.++.|||++++...........+. ...+++++.|.+.+.+.+.+
T Consensus 77 ~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~ 123 (347)
T 4id9_A 77 GVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVF 123 (347)
T ss_dssp TCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 468999999875332211111111 23467888888889888776
No 31
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=21.69 E-value=34 Score=30.65 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=22.7
Q ss_pred CcEEEEEeccceeeccCCCCcEEEEcc
Q 030214 13 KTSLKISKGDISRWCVDRSSDAIVSPT 39 (181)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~DaIVn~a 39 (181)
+.+|.|++||+.+++...++|+||.=-
T Consensus 410 ~dkVtVI~gd~eev~LPEKVDIIVSEw 436 (637)
T 4gqb_A 410 GSQVTVVSSDMREWVAPEKADIIVSEL 436 (637)
T ss_dssp GGGEEEEESCTTTCCCSSCEEEEECCC
T ss_pred CCeEEEEeCcceeccCCcccCEEEEEc
Confidence 567999999999887656789999865
No 32
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=21.55 E-value=1.6e+02 Score=23.10 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=26.7
Q ss_pred CCceEEEeeCCccCCCCChHHHHH---HHHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~sIa~ 134 (181)
.++.|||++++.-....+....+. ....++++.|.+.+.+ +.+
T Consensus 90 ~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~ 135 (362)
T 3sxp_A 90 HFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIY 135 (362)
T ss_dssp CCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEE
T ss_pred CCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEE
Confidence 579999999853221112222333 4456888888888887 444
No 33
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=21.25 E-value=22 Score=27.24 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=25.8
Q ss_pred CceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEe
Q 030214 92 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 134 (181)
++.|||++++.........+.=-...+++++.|.+.+.+.+.+
T Consensus 64 ~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~ 106 (286)
T 3gpi_A 64 PEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFF 106 (286)
T ss_dssp CSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 7999999987432211100011234677888888888877766
No 34
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=21.23 E-value=1.5e+02 Score=22.23 Aligned_cols=40 Identities=20% Similarity=0.431 Sum_probs=27.1
Q ss_pred CceEEEeeCCccCCCCChHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 030214 92 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 136 (181)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 136 (181)
++.|||++++.+. . +.--...+++++.|.+.+.+.+.+..
T Consensus 67 ~d~vi~~a~~~~~----~-~~n~~~~~~l~~a~~~~~~~~~v~~S 106 (287)
T 2jl1_A 67 VSKLLFISGPHYD----N-TLLIVQHANVVKAARDAGVKHIAYTG 106 (287)
T ss_dssp CSEEEECCCCCSC----H-HHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEEcCCCCcC----c-hHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 6899999987532 1 11123557888888888888777643
No 35
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=21.16 E-value=1.3e+02 Score=22.63 Aligned_cols=44 Identities=20% Similarity=0.079 Sum_probs=27.4
Q ss_pred CCceEEEeeCCccC---CCCChHHHHH---HHHHHHHHHHHhCCCcEEEe
Q 030214 91 PVSHVIHTVGPVFN---FHCNPEDILR---SAYKNCLSVGKANNIQYIAF 134 (181)
Q Consensus 91 ~~k~IiH~v~P~~~---~~~~~~~~L~---~~~~~~L~~a~~~~~~sIa~ 134 (181)
.++.|||++++.-. ...+..+.+. ...+++++.|.+.+++.+.+
T Consensus 61 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~ 110 (319)
T 4b8w_A 61 QPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVS 110 (319)
T ss_dssp CCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 37999999987421 0012222222 23467888888889888776
No 36
>3biy_A Histone acetyltransferase P300; P300 HAT, bisubstrate inhibitor, protein-inhibitor complex; HET: 01K; 1.70A {Homo sapiens}
Probab=21.02 E-value=74 Score=26.62 Aligned_cols=86 Identities=12% Similarity=-0.008 Sum_probs=50.4
Q ss_pred EEEEccCCCCC-CCchHHHHHHHHhChhHHHHHhhccccCCCCCCCCCcEEEecCCCCCCceEEEeeCCccCCCCChHHH
Q 030214 34 AIVSPTNEILL-LGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDI 112 (181)
Q Consensus 34 aIVn~an~~l~-~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~l~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~ 112 (181)
+.+.--||.-. ..+++-..+++.-=..+.+.++..+ . ..+ .++..+-.-+-+||+|+. |.++.- .....
T Consensus 107 vyI~YLDSV~yf~p~~~Rt~vY~eill~Yl~y~k~~G----f---~~~-hiWAcPP~~GDDYIF~~H-P~~Qk~-p~~~r 176 (380)
T 3biy_A 107 VYISYLDSVHFFRPKCLRTAVYHEILIGYLEYVKKLG----Y---TTG-HIWACPPSEGDDYIFHCH-PPDQKI-PKPKR 176 (380)
T ss_dssp EEEEEEEECSCCSSGGGHHHHHHHHHHHHHHHHHHHT----C---CEE-EEECCCCCTTCCSSSSSC-CTTCCC-CCHHH
T ss_pred EEEEEeccccccCcchhHHHHHHHHHHHHHHHHHhCC----C---ceE-EEEccCCCCCCceEEeeC-ccccCC-CCcHH
Confidence 34444444322 1234555555544345556666553 1 111 234444444568999987 555443 45779
Q ss_pred HHHHHHHHHHHHHhCCC
Q 030214 113 LRSAYKNCLSVGKANNI 129 (181)
Q Consensus 113 L~~~~~~~L~~a~~~~~ 129 (181)
|+.=|++.|+.|.+.|+
T Consensus 177 L~~WY~~mL~kg~~~gi 193 (380)
T 3biy_A 177 LQEWYKKMLDKAVSERI 193 (380)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCe
Confidence 99999999999988775
Done!