BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030216
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 49/67 (73%), Gaps = 3/67 (4%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
+YY VLGV +S E+I++AYRKLA++WHPD K P +A+ KF+ + EAY VLSD
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPD---KNPDNKEEAEKKFKLVSEAYEVLSDS 66
Query: 72 RKRTLYD 78
+KR+LYD
Sbjct: 67 KKRSLYD 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 7/69 (10%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
+YY VLGV +++ EE+++AYRKLA+++HPD K P+ KF++I +AY VLSD
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPD---KNPN----EGEKFKQISQAYEVLSDA 59
Query: 72 RKRTLYDAG 80
+KR LYD G
Sbjct: 60 KKRELYDKG 68
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVL 68
+ YY +LGVS + EIR+AY++LAM++HPDR +A+ KF+EI+EAY VL
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVL 56
Query: 69 SDERKRTLYD 78
+D +KR YD
Sbjct: 57 TDSQKRAAYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVL 68
+ YY +LGVS + EIR+AY++LAM++HPDR +A+ KF+EI+EAY VL
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVL 56
Query: 69 SDERKRTLYD 78
+D +KR YD
Sbjct: 57 TDSQKRAAYD 66
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVL 68
+ YY +LGVS + EIR+AY++LAM++HPDR A+ KF+EI+EAY VL
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKE----AEAKFKEIKEAYEVL 56
Query: 69 SDERKRTLYD 78
+D +KR YD
Sbjct: 57 TDSQKRAAYD 66
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72
YY VL V +S E I++AYRKLA++WHPD K P +A+ +F+++ EAY VLSD +
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPD---KNPENKEEAERRFKQVAEAYEVLSDAK 67
Query: 73 KRTLYD 78
KR +YD
Sbjct: 68 KRDIYD 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
SYY +L V +S ++I++AYR+ A+QWHPD K P A+ KF+E+ EAY VLSD+
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPD---KNPDNKEFAEKKFKEVAEAYEVLSDK 59
Query: 72 RKRTLYD 78
KR +YD
Sbjct: 60 HKREIYD 66
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 5/67 (7%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
YY LG++ +S EEI+RAYR+ A+++HPD+ K P A+ KF+EI EAY VLSD
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDK-NKEPG----AEEKFKEIAEAYDVLSDP 58
Query: 72 RKRTLYD 78
RKR ++D
Sbjct: 59 RKREIFD 65
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 7/69 (10%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
YY VLGV +S E+++AYRK+A+++HPD K P +F++I +AY VLSDE
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPD---KNPD----GAEQFKQISQAYEVLSDE 61
Query: 72 RKRTLYDAG 80
+KR +YD G
Sbjct: 62 KKRQIYDQG 70
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72
YY +LGV ++S +EI++AY +LA ++HPD P KAK KF ++ EAY VLSDE
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEV 64
Query: 73 KRTLYDA 79
KR YDA
Sbjct: 65 KRKQYDA 71
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 8/75 (10%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
S Y VLG+ +++ ++I+++YRKLA+++HPD+ P +A KF+EI A+++L+D
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP----EAADKFKEINNAHAILTDA 73
Query: 72 RKRTLYDA----GLY 82
KR +YD GLY
Sbjct: 74 TKRNIYDKYGSLGLY 88
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Query: 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72
YY +LGV +S +I++A+ KLAM++HPD+ K+P A+ KF+EI EAY LSD
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDK-NKSPD----AEAKFREIAEAYETLSDAN 63
Query: 73 KRTLYD 78
+R YD
Sbjct: 64 RRKEYD 69
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 5/65 (7%)
Query: 14 YSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERK 73
Y VLGVS +S +I++AY+KLA +WHPD+ K P A+ +F +I +AY +LS+E K
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDK-NKDPG----AEDRFIQISKAYEILSNEEK 74
Query: 74 RTLYD 78
RT YD
Sbjct: 75 RTNYD 79
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
++YS+LGVS +S EIR+A++KLA++ HPD+ P+ G F +I AY VL DE
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHG----DFLKINRAYEVLKDE 58
Query: 72 RKRTLYD 78
R YD
Sbjct: 59 DLRKKYD 65
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72
YY +LGVS +S E++++AYR+LA+++HPD+ P A F+ I AY+VLS+
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDK-NHAPG----ATEAFKAIGTAYAVLSNPE 63
Query: 73 KRTLYD 78
KR YD
Sbjct: 64 KRKQYD 69
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 7/65 (10%)
Query: 14 YSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERK 73
Y +LGVS ++ +E+++ YRK A+++HPD+ T KF+EI EA+ +L+D +K
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE-------KFKEISEAFEILNDPQK 63
Query: 74 RTLYD 78
R +YD
Sbjct: 64 REIYD 68
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
++YS+LGVS +S EIR+A++KLA++ HPD+ P+ G F +I AY VL DE
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHG----DFLKINRAYEVLKDE 77
Query: 72 RKRTLYD 78
R YD
Sbjct: 78 DLRKKYD 84
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
YY+++GV ++ I+ AYR+LA ++HPD +K P A+ +F+E+ EA+ VLSDE
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPD-VSKEPD----AEARFKEVAEAWEVLSDE 60
Query: 72 RKRTLYD 78
++R YD
Sbjct: 61 QRRAEYD 67
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72
YY +LGV ++ +EI +AYRKLA+QWHPD + + KA+ KF +I A VLSD
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 73 KRTLYDAG 80
R +D G
Sbjct: 443 XRKKFDDG 450
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72
YY +LGV ++ +EI +AYRKLA+QWHPD + + KA+ KF +I A VLSD
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 73 KRTLYDAG 80
R +D G
Sbjct: 443 MRKKFDDG 450
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72
YY++LGV ++ I+ AYR+LA ++HPD S A+ KF+++ EA+ VL DE+
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDV-----SKENDAEAKFKDLAEAWEVLKDEQ 84
Query: 73 KRTLYD 78
+R YD
Sbjct: 85 RRAEYD 90
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72
YY++LG SSVE+I ++ A++ HPD+ + P KA FQ++Q+A +L++E
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP----KAVETFQKLQKAKEILTNEE 77
Query: 73 KRTLYD 78
R YD
Sbjct: 78 SRARYD 83
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 6 ERKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRW-TKTPS-LLGKAKVKFQEIQE 63
E+ + +YS+LG +++ ++++ Y+KL + +HPD+ T P+ + + KF EI +
Sbjct: 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQ 64
Query: 64 AYSVLSDERKRTLYD 78
A+ +L +E + YD
Sbjct: 65 AWKILGNEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 6 ERKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWT-KTPS-LLGKAKVKFQEIQE 63
E+ ++ +YS+LG +++ ++++ Y+KL + +HPD+ + P+ + + KF EI +
Sbjct: 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQ 70
Query: 64 AYSVLSDERKRTLYD 78
A+ +L +E + YD
Sbjct: 71 AWKILGNEETKKKYD 85
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 14 YSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERK 73
Y +LGV ++ +I+ AY + +HPDR + + +A +F I +AY VL
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS----AEAAERFTRISQAYVVLGSATL 75
Query: 74 RTLYDAGL 81
R YD GL
Sbjct: 76 RRKYDRGL 83
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 14 YSVLGVSVHS-SVEEIRRAYRKLAMQWHPDRW-TKTPSLLGKAKVKFQEIQEAYSVLSDE 71
Y VL V+ +++ +AYR LA + HPDR K LL A+ +F+ I AY L D+
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLL--AEERFRVIATAYETLKDD 75
Query: 72 RKRTLYDAGLYDP 84
+T YD L P
Sbjct: 76 EAKTNYDYYLDHP 88
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 2 EAESERKVQPSYYS--VLGVSVHSSVEEIRRAYRKLAMQWHPDR 43
+A++ R+++ S S +LGV +S +E+ +AYRKLA+ HPD+
Sbjct: 16 QADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
+ + +G++ + E++++ YRK + HPD+ T P AK+ F E+ +A+S ++
Sbjct: 50 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP-YEQYAKMIFMELNDAWSEFENQ 108
Query: 72 RKRTLY 77
++ LY
Sbjct: 109 GQKPLY 114
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71
+ + +G++ + E++++ YRK + HPD+ T P AK+ F E+ +A+S ++
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP-YEQYAKMIFMELNDAWSEFENQ 176
Query: 72 RKRTL 76
++ L
Sbjct: 177 GQKPL 181
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 17 LGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTL 76
+G + + E++++ YRK + HPD+ T P AK F E+ +A+S ++ ++ L
Sbjct: 42 VGXADLVTPEQVKKVYRKAVLVVHPDKATGQP-YEQYAKXIFXELNDAWSEFENQGQKPL 100
Query: 77 Y 77
Y
Sbjct: 101 Y 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,251,421
Number of Sequences: 62578
Number of extensions: 188436
Number of successful extensions: 560
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 35
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)