Query 030216
Match_columns 181
No_of_seqs 292 out of 2165
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 10:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1.9E-25 4E-30 193.1 8.9 89 9-101 2-100 (371)
2 KOG0713 Molecular chaperone (D 99.9 4.5E-23 9.8E-28 174.9 6.9 72 6-81 11-82 (336)
3 KOG0717 Molecular chaperone (D 99.8 7.1E-21 1.5E-25 166.6 8.4 138 7-148 4-183 (508)
4 PRK14288 chaperone protein Dna 99.8 4.9E-21 1.1E-25 167.2 7.1 67 10-80 2-68 (369)
5 PRK14296 chaperone protein Dna 99.8 1.6E-20 3.5E-25 164.1 7.0 66 10-80 3-68 (372)
6 PRK14279 chaperone protein Dna 99.8 3E-20 6.5E-25 163.4 6.8 68 9-80 7-74 (392)
7 PRK14287 chaperone protein Dna 99.8 5.8E-20 1.3E-24 160.6 8.4 66 10-80 3-68 (371)
8 PF00226 DnaJ: DnaJ domain; I 99.8 5.9E-20 1.3E-24 122.0 5.6 64 12-78 1-64 (64)
9 PRK14286 chaperone protein Dna 99.8 6.1E-20 1.3E-24 160.5 7.0 67 10-80 3-69 (372)
10 PTZ00037 DnaJ_C chaperone prot 99.8 8E-20 1.7E-24 161.9 6.9 85 9-101 26-112 (421)
11 KOG0719 Molecular chaperone (D 99.8 2.3E-19 5E-24 145.6 8.4 91 9-101 12-104 (264)
12 KOG0712 Molecular chaperone (D 99.8 9.9E-20 2.2E-24 155.8 6.5 66 9-81 2-67 (337)
13 PRK14298 chaperone protein Dna 99.8 1.2E-19 2.6E-24 158.8 7.3 66 10-80 4-69 (377)
14 PRK14282 chaperone protein Dna 99.8 2E-19 4.3E-24 157.1 7.2 69 10-81 3-71 (369)
15 PRK14285 chaperone protein Dna 99.8 2.5E-19 5.4E-24 156.3 7.0 66 11-80 3-68 (365)
16 PRK14295 chaperone protein Dna 99.8 2.5E-19 5.3E-24 157.5 7.0 66 10-79 8-73 (389)
17 PRK10767 chaperone protein Dna 99.8 4.2E-19 9E-24 155.1 7.8 67 10-80 3-69 (371)
18 PRK14277 chaperone protein Dna 99.8 3.7E-19 8E-24 156.2 7.1 67 10-80 4-70 (386)
19 PRK14276 chaperone protein Dna 99.8 3.3E-19 7.2E-24 156.2 6.6 66 10-80 3-68 (380)
20 PRK14283 chaperone protein Dna 99.8 3.7E-19 8.1E-24 155.8 6.9 66 10-80 4-69 (378)
21 PRK14299 chaperone protein Dna 99.8 4.4E-19 9.5E-24 150.5 6.8 66 10-80 3-68 (291)
22 PRK14297 chaperone protein Dna 99.8 4.3E-19 9.3E-24 155.5 6.5 67 10-80 3-69 (380)
23 PRK14301 chaperone protein Dna 99.8 4.7E-19 1E-23 154.9 6.6 67 10-80 3-69 (373)
24 PRK14291 chaperone protein Dna 99.8 5.1E-19 1.1E-23 155.1 6.9 67 10-81 2-68 (382)
25 PRK14278 chaperone protein Dna 99.8 5.6E-19 1.2E-23 154.7 6.8 65 11-80 3-67 (378)
26 PRK14294 chaperone protein Dna 99.8 6.4E-19 1.4E-23 153.7 7.1 67 10-80 3-69 (366)
27 PRK14284 chaperone protein Dna 99.8 6.5E-19 1.4E-23 154.9 7.0 66 11-80 1-66 (391)
28 PRK14280 chaperone protein Dna 99.8 7.3E-19 1.6E-23 153.9 6.9 65 11-80 4-68 (376)
29 PRK01356 hscB co-chaperone Hsc 99.8 4.7E-18 1E-22 133.5 10.4 98 11-109 2-105 (166)
30 PRK14281 chaperone protein Dna 99.8 1.1E-18 2.3E-23 153.8 6.9 67 11-81 3-69 (397)
31 PRK03578 hscB co-chaperone Hsc 99.8 1.2E-17 2.5E-22 132.4 11.7 113 9-121 4-122 (176)
32 KOG0716 Molecular chaperone (D 99.8 1.3E-18 2.9E-23 143.9 6.3 68 9-80 29-96 (279)
33 KOG0691 Molecular chaperone (D 99.7 2E-18 4.4E-23 146.0 7.5 68 10-81 4-71 (296)
34 PRK05014 hscB co-chaperone Hsc 99.7 1.8E-17 3.9E-22 130.8 11.9 100 11-110 1-106 (171)
35 KOG0718 Molecular chaperone (D 99.7 2E-18 4.2E-23 151.6 6.5 73 7-80 5-77 (546)
36 PRK00294 hscB co-chaperone Hsc 99.7 2.6E-17 5.7E-22 130.0 11.7 112 9-120 2-118 (173)
37 KOG0715 Molecular chaperone (D 99.7 2.8E-18 6.1E-23 145.3 6.4 68 11-83 43-110 (288)
38 PRK14290 chaperone protein Dna 99.7 3.6E-18 7.8E-23 149.0 6.9 67 11-80 3-69 (365)
39 PRK14289 chaperone protein Dna 99.7 4.4E-18 9.5E-23 149.4 7.2 67 10-80 4-70 (386)
40 PRK14300 chaperone protein Dna 99.7 4.9E-18 1.1E-22 148.5 6.5 65 11-80 3-67 (372)
41 TIGR02349 DnaJ_bact chaperone 99.7 5.3E-18 1.1E-22 147.3 6.6 64 12-80 1-64 (354)
42 PRK10266 curved DNA-binding pr 99.7 5.5E-18 1.2E-22 144.7 6.5 65 11-80 4-68 (306)
43 smart00271 DnaJ DnaJ molecular 99.7 1.2E-17 2.6E-22 109.2 6.3 59 11-72 1-59 (60)
44 PRK14292 chaperone protein Dna 99.7 7.9E-18 1.7E-22 147.1 6.5 66 11-81 2-67 (371)
45 PRK14293 chaperone protein Dna 99.7 9.9E-18 2.1E-22 146.7 6.9 65 11-80 3-67 (374)
46 PTZ00341 Ring-infected erythro 99.7 2.5E-17 5.5E-22 155.1 8.6 70 7-81 569-638 (1136)
47 cd06257 DnaJ DnaJ domain or J- 99.7 3.6E-17 7.7E-22 105.0 6.3 55 12-70 1-55 (55)
48 COG5269 ZUO1 Ribosome-associat 99.7 2.1E-17 4.5E-22 137.1 6.2 126 4-131 36-175 (379)
49 PHA03102 Small T antigen; Revi 99.6 3E-16 6.5E-21 121.4 5.9 64 10-81 4-69 (153)
50 COG2214 CbpA DnaJ-class molecu 99.6 4.1E-16 8.9E-21 123.5 6.6 68 9-79 4-71 (237)
51 TIGR03835 termin_org_DnaJ term 99.6 6.2E-16 1.3E-20 143.0 8.5 67 11-82 2-68 (871)
52 PRK01773 hscB co-chaperone Hsc 99.6 5.5E-15 1.2E-19 116.8 12.0 108 11-118 2-116 (173)
53 KOG0721 Molecular chaperone (D 99.6 2E-15 4.3E-20 121.6 6.5 70 8-81 96-165 (230)
54 KOG0624 dsRNA-activated protei 99.6 2.5E-15 5.3E-20 129.0 5.1 74 7-81 390-463 (504)
55 KOG0720 Molecular chaperone (D 99.5 8.1E-15 1.8E-19 128.8 6.8 70 8-82 232-301 (490)
56 TIGR00714 hscB Fe-S protein as 99.5 1.8E-13 3.8E-18 106.7 11.0 99 22-120 2-104 (157)
57 PRK09430 djlA Dna-J like membr 99.4 8E-14 1.7E-18 117.1 5.3 62 9-70 198-262 (267)
58 KOG0550 Molecular chaperone (D 99.4 6.1E-14 1.3E-18 122.4 4.1 73 6-81 368-440 (486)
59 PHA02624 large T antigen; Prov 99.4 1.5E-13 3.3E-18 125.6 5.9 93 1-101 1-98 (647)
60 PTZ00100 DnaJ chaperone protei 99.4 2.6E-13 5.5E-18 100.4 4.5 52 10-69 64-115 (116)
61 KOG0722 Molecular chaperone (D 99.4 2E-13 4.3E-18 112.6 3.7 71 9-84 31-101 (329)
62 KOG0714 Molecular chaperone (D 99.4 5.2E-13 1.1E-17 110.4 4.7 69 10-81 2-70 (306)
63 COG5407 SEC63 Preprotein trans 99.3 3.8E-12 8.2E-17 112.1 5.5 72 10-81 97-169 (610)
64 KOG1150 Predicted molecular ch 99.1 1.6E-10 3.5E-15 92.5 5.1 65 9-76 51-115 (250)
65 KOG3192 Mitochondrial J-type c 98.7 8.5E-08 1.8E-12 74.0 7.8 126 7-132 4-142 (168)
66 KOG1789 Endocytosis protein RM 98.5 1.1E-07 2.3E-12 91.3 5.1 55 8-69 1278-1336(2235)
67 KOG0568 Molecular chaperone (D 98.5 1.6E-07 3.5E-12 77.1 4.4 58 9-71 45-103 (342)
68 KOG0723 Molecular chaperone (D 98.3 9.3E-07 2E-11 64.1 4.4 51 13-71 58-108 (112)
69 COG1076 DjlA DnaJ-domain-conta 97.4 7.8E-05 1.7E-09 58.9 2.3 58 11-68 113-173 (174)
70 COG1076 DjlA DnaJ-domain-conta 97.4 0.00027 5.8E-09 55.8 5.3 73 12-84 2-77 (174)
71 KOG0431 Auxilin-like protein a 97.3 0.00026 5.7E-09 63.8 4.6 51 18-68 395-448 (453)
72 PF03656 Pam16: Pam16; InterP 95.3 0.03 6.5E-07 42.2 4.4 52 13-72 60-111 (127)
73 PF14687 DUF4460: Domain of un 93.9 0.14 3E-06 37.8 4.9 52 21-72 4-55 (112)
74 PF13446 RPT: A repeated domai 89.4 1.1 2.3E-05 29.0 4.8 27 11-37 5-31 (62)
75 KOG0724 Zuotin and related mol 88.0 0.45 9.8E-06 40.9 2.9 58 22-79 3-60 (335)
76 PF11833 DUF3353: Protein of u 79.5 4.4 9.6E-05 32.6 5.1 40 20-71 1-40 (194)
77 PF07709 SRR: Seven Residue Re 49.1 11 0.00023 17.3 0.9 13 57-69 2-14 (14)
78 KOG3442 Uncharacterized conser 45.0 30 0.00065 26.1 3.3 32 13-44 61-92 (132)
79 PF12434 Malate_DH: Malate deh 41.8 34 0.00073 18.8 2.3 18 24-41 9-26 (28)
80 PF07739 TipAS: TipAS antibiot 38.6 1.4E+02 0.003 20.9 6.7 49 18-79 51-100 (118)
81 cd01388 SOX-TCF_HMG-box SOX-TC 36.3 97 0.0021 20.1 4.5 42 29-79 13-54 (72)
82 cd00084 HMG-box High Mobility 34.4 1.1E+02 0.0024 18.7 4.9 41 29-78 12-52 (66)
83 COG5552 Uncharacterized conser 31.2 1.7E+02 0.0038 20.1 5.0 32 11-42 3-34 (88)
84 cd01389 MATA_HMG-box MATA_HMG- 29.9 1.6E+02 0.0036 19.2 4.9 42 28-78 12-53 (77)
85 COG2879 Uncharacterized small 29.7 1.1E+02 0.0025 20.2 3.8 29 30-64 26-54 (65)
86 PF08447 PAS_3: PAS fold; Int 29.2 13 0.00029 24.4 -0.7 30 10-43 5-35 (91)
87 PF15178 TOM_sub5: Mitochondri 26.1 1.1E+02 0.0023 19.1 3.0 24 14-37 2-25 (51)
88 cd01390 HMGB-UBF_HMG-box HMGB- 25.8 1.7E+02 0.0037 18.0 4.8 40 30-78 13-52 (66)
89 PF10041 DUF2277: Uncharacteri 21.8 2.8E+02 0.006 19.1 5.8 32 13-44 5-36 (78)
90 COG0089 RplW Ribosomal protein 20.6 91 0.002 22.2 2.2 22 16-37 25-46 (94)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.9e-25 Score=193.14 Aligned_cols=89 Identities=43% Similarity=0.634 Sum_probs=73.8
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCCh-h
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPEE-E 87 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~~-~ 87 (181)
...|||+||||+++||.+|||+|||+||++||||+++.++ +|+++|++|++||+|||||++|++||+....... .
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~----~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~g 77 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK----EAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAG 77 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccC
Confidence 4689999999999999999999999999999999998644 7999999999999999999999999985533322 0
Q ss_pred h--------hh-hhHHHHHHHHH
Q 030216 88 E--------EE-GFSDFVQEMLS 101 (181)
Q Consensus 88 ~--------~~-~f~~~~~~~~~ 101 (181)
. .. +|.++|..+|.
T Consensus 78 g~gg~g~~~fgg~~~DIF~~~Fg 100 (371)
T COG0484 78 GFGGFGFGGFGGDFGDIFEDFFG 100 (371)
T ss_pred CcCCCCcCCCCCCHHHHHHHhhc
Confidence 0 01 35677777774
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.5e-23 Score=174.91 Aligned_cols=72 Identities=44% Similarity=0.715 Sum_probs=67.3
Q ss_pred ccCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 6 ERKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 6 ~~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
.....+|||+||||+++|+..|||+|||+||++||||||+++| .|.+.|+.|+.||+|||||.+|+.||...
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp----~A~e~F~~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDP----NANEKFKEINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 3445689999999999999999999999999999999999987 79999999999999999999999999844
No 3
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.1e-21 Score=166.59 Aligned_cols=138 Identities=31% Similarity=0.515 Sum_probs=97.2
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc---CCC
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG---LYD 83 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~---l~~ 83 (181)
....++||+||||..+|++.+||++||+|||+|||||++.. .++|+++|+.|+.||+|||||..|+.||.. ++.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~---ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR---IEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc---HHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 34678999999999999999999999999999999998553 348999999999999999999999999972 111
Q ss_pred C-----------------------ChhhhhhhHHHHHHHHHHhHH--Hhhcc-----------cCCCHHHHHHHHHHHHh
Q 030216 84 P-----------------------EEEEEEGFSDFVQEMLSLMAE--ARKEE-----------KSYSMEELQTMFMEMAQ 127 (181)
Q Consensus 84 ~-----------------------~~~~~~~f~~~~~~~~~~~~~--~~~~~-----------~~~s~ee~~~~f~~~~~ 127 (181)
. -+....+|..+...+|-.+.. +...+ ..-..+.+. -|+.+|-
T Consensus 81 ~~~s~~~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~d~~~~ap~fg~~~t~ye~~~-~fY~~W~ 159 (508)
T KOG0717|consen 81 GKNSDTGVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLGDSKLLYPLFGYSTTDYEQVV-PFYQFWL 159 (508)
T ss_pred CCCCccccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhccCCccccccccCCCCcHHHHH-HHHHHHH
Confidence 1 111123444444444432211 11111 123445555 7889999
Q ss_pred hccc---CccccCCCCCCCCCCCC
Q 030216 128 EFEQ---SSWFCGYPVADDSCSLE 148 (181)
Q Consensus 128 ~f~~---~~~~~~~~~~~~~~~~~ 148 (181)
+|.+ +.|.|++.+.+.+..-+
T Consensus 160 afsT~Ksf~W~d~Ydv~~~~~r~~ 183 (508)
T KOG0717|consen 160 AFSTKKSFEWLDEYDVEEESDRFT 183 (508)
T ss_pred hhhhhhhHHhhhhhhhhhhhhHHH
Confidence 9877 57778887776665433
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=4.9e-21 Score=167.18 Aligned_cols=67 Identities=52% Similarity=0.834 Sum_probs=62.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++||.++||+|||+||++||||+++..+ .|.++|++|++||+||+||.+|+.||..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~----~a~~~f~~i~~AYevLsd~~kR~~YD~~ 68 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK----EAEEKFKLINEAYGVLSDEKKRALYDRY 68 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcc----HHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 369999999999999999999999999999999986543 6889999999999999999999999984
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.6e-20 Score=164.11 Aligned_cols=66 Identities=52% Similarity=0.684 Sum_probs=61.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+||++||||+++.. .|.++|++|++||+||+||.+|+.||..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~-----~a~~~F~~i~~AyevLsD~~KR~~YD~~ 68 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP-----DAHDKMVEINEAADVLLDKDKRKQYDQF 68 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----hHHHHHHHHHHHHHHhcCHHHhhhhhhc
Confidence 46999999999999999999999999999999998532 6889999999999999999999999984
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3e-20 Score=163.41 Aligned_cols=68 Identities=47% Similarity=0.716 Sum_probs=62.9
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
...|||+||||+++|+.++||+|||+|+++||||+++..+ .|.++|++|++||+||+||.+|+.||..
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vLsD~~KR~~YD~~ 74 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDP----AAEERFKAVSEAHDVLSDPAKRKEYDET 74 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence 3579999999999999999999999999999999986543 6889999999999999999999999984
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.8e-20 Score=160.57 Aligned_cols=66 Identities=48% Similarity=0.822 Sum_probs=61.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++. + .+.++|++|++||+||+||.+|+.||..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~----~~~~~f~~i~~Ay~~L~d~~kR~~YD~~ 68 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-P----DAEDKFKEVKEAYDTLSDPQKKAHYDQF 68 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-h----hHHHHHHHHHHHHHHhCcHhHHHHHHhh
Confidence 4699999999999999999999999999999999853 2 5788999999999999999999999984
No 8
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.80 E-value=5.9e-20 Score=121.98 Aligned_cols=64 Identities=44% Similarity=0.763 Sum_probs=59.9
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 12 d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
|||+||||+++++.++||++|+++++++|||++.... ..+.+.|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~---~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE---AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH---HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh---hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987653 468899999999999999999999998
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=6.1e-20 Score=160.46 Aligned_cols=67 Identities=46% Similarity=0.775 Sum_probs=62.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++..+ .|.++|++|++||+||+||.+|+.||..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 69 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK----ESEEKFKEATEAYEILRDPKKRQAYDQF 69 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 469999999999999999999999999999999986543 6889999999999999999999999983
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.79 E-value=8e-20 Score=161.85 Aligned_cols=85 Identities=39% Similarity=0.568 Sum_probs=67.5
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCCh--
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPEE-- 86 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~~-- 86 (181)
...|||+||||+++||.++||+|||+||++|||||++ ..++|++|++||+||+||.+|+.||........
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~--------~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~ 97 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG--------DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGG 97 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc--------hHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccC
Confidence 3579999999999999999999999999999999973 147999999999999999999999984321111
Q ss_pred hhhhhhHHHHHHHHH
Q 030216 87 EEEEGFSDFVQEMLS 101 (181)
Q Consensus 87 ~~~~~f~~~~~~~~~ 101 (181)
....++.++|..+|.
T Consensus 98 ~~~~d~~d~f~~~Fg 112 (421)
T PTZ00037 98 EQPADASDLFDLIFG 112 (421)
T ss_pred CCCcchhhhHHHhhc
Confidence 011235566666664
No 11
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.3e-19 Score=145.60 Aligned_cols=91 Identities=36% Similarity=0.564 Sum_probs=74.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCC--h
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPE--E 86 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~--~ 86 (181)
...|+|+||||.++|+..+||+|||+|+++||||++. .....+++++|++|+.||+||+|.++|+.||....-+. .
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~--eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~~~ 89 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH--EEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDESG 89 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch--hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCccc
Confidence 3459999999999999999999999999999999985 44566899999999999999999999999999653222 2
Q ss_pred hhhhhhHHHHHHHHH
Q 030216 87 EEEEGFSDFVQEMLS 101 (181)
Q Consensus 87 ~~~~~f~~~~~~~~~ 101 (181)
+...++-+|+..||-
T Consensus 90 d~~~~~~e~~~~iyk 104 (264)
T KOG0719|consen 90 DIDEDWLEFWRAIYK 104 (264)
T ss_pred hhhhHHHHHHHHHHh
Confidence 233445566666664
No 12
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.9e-20 Score=155.79 Aligned_cols=66 Identities=50% Similarity=0.778 Sum_probs=61.8
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
....||+||||+++|+.+|||+|||+|+++|||||++. +.++|++|.+||+|||||++|..||+..
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-------~~ekfkei~~AyevLsd~ekr~~yD~~g 67 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-------AGEKFKEISQAYEVLSDPEKREIYDQYG 67 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 45789999999999999999999999999999999953 7899999999999999999999999954
No 13
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=158.83 Aligned_cols=66 Identities=53% Similarity=0.870 Sum_probs=61.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~~~~f~~i~~Ay~vL~d~~kR~~YD~~ 69 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-----DAEEKFKEISEAYAVLSDAEKRAQYDRF 69 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh-----hHHHHHHHHHHHHHHhcchHhhhhhhhc
Confidence 36999999999999999999999999999999998532 5789999999999999999999999984
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2e-19 Score=157.11 Aligned_cols=69 Identities=51% Similarity=0.862 Sum_probs=62.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
..|||+||||+++|+.++||+|||+|+++||||+++.. ...|.++|++|++||+||+||.+|+.||...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g 71 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN---RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc---hhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence 46999999999999999999999999999999998543 2258899999999999999999999999843
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.5e-19 Score=156.29 Aligned_cols=66 Identities=44% Similarity=0.752 Sum_probs=61.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
.|||+||||+++|+.++||+|||+|+++||||+++..+ .+.++|++|++||+||+||.+|..||..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yd~~ 68 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK----EAESIFKEATEAYEVLIDDNKRAQYDRF 68 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHHcCcchhHHHHhc
Confidence 69999999999999999999999999999999986543 6789999999999999999999999984
No 16
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.5e-19 Score=157.49 Aligned_cols=66 Identities=52% Similarity=0.838 Sum_probs=61.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
..|||+||||+++|+.++||+|||+|+++||||+++..+ .+.++|++|++||+||+||.+|+.||.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDA----KAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----hHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 469999999999999999999999999999999986543 588999999999999999999999997
No 17
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=4.2e-19 Score=155.11 Aligned_cols=67 Identities=55% Similarity=0.863 Sum_probs=62.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++..+ .|.++|++|++||++|+||.+|..||..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~r~~yd~~ 69 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK----EAEEKFKEIKEAYEVLSDPQKRAAYDQY 69 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcH----HHHHHHHHHHHHHHHhcchhhhhHhhhc
Confidence 469999999999999999999999999999999986543 5788999999999999999999999984
No 18
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.7e-19 Score=156.22 Aligned_cols=67 Identities=46% Similarity=0.779 Sum_probs=62.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++..+ .+.++|++|++||+||+||.+|+.||..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~ 70 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK----EAEQKFKEINEAYEILSDPQKRAQYDQF 70 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----HHHHHHHHHHHHHHHhCCHHHHHHHHhh
Confidence 469999999999999999999999999999999986543 5789999999999999999999999983
No 19
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.3e-19 Score=156.23 Aligned_cols=66 Identities=47% Similarity=0.757 Sum_probs=61.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 68 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP-----GAEEKYKEVQEAYETLSDPQKRAAYDQY 68 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----CHHHHHHHHHHHHHHhcCHhhhhhHhhc
Confidence 46999999999999999999999999999999998642 5788999999999999999999999983
No 20
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.7e-19 Score=155.80 Aligned_cols=66 Identities=50% Similarity=0.784 Sum_probs=61.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++. + .|.++|++|++||+||+||.+|+.||..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~----~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~ 69 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-E----GAEEKFKEISEAYAVLSDDEKRQRYDQF 69 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----cHHHHHHHHHHHHHHhchhHHHHHHhhh
Confidence 5799999999999999999999999999999999863 2 6899999999999999999999999983
No 21
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.4e-19 Score=150.46 Aligned_cols=66 Identities=47% Similarity=0.787 Sum_probs=61.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~~~~f~~i~~Ay~~L~d~~kr~~yD~~ 68 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP-----GAEEKFKEINEAYTVLSDPEKRRIYDTY 68 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----hHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 46999999999999999999999999999999998532 5788999999999999999999999984
No 22
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.3e-19 Score=155.52 Aligned_cols=67 Identities=46% Similarity=0.773 Sum_probs=62.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++..+ .|.++|++|++||+||+||.+|+.||..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 69 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK----EAEEKFKEINEAYQVLSDPQKKAQYDQF 69 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHhcCHhhhCchhhc
Confidence 369999999999999999999999999999999986543 6889999999999999999999999984
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.7e-19 Score=154.95 Aligned_cols=67 Identities=55% Similarity=0.857 Sum_probs=62.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++..+ .+.++|++|++||+||+||.+|+.||..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~ 69 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNP----EAEQKFKEAAEAYEVLRDAEKRARYDRF 69 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCCh----HHHHHHHHHHHHHHHhcchhhhhhhhhc
Confidence 369999999999999999999999999999999986543 5788999999999999999999999984
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.1e-19 Score=155.14 Aligned_cols=67 Identities=51% Similarity=0.794 Sum_probs=61.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-----~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g 68 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-----EAEEKFKEINEAYQVLSDPEKRKLYDQFG 68 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----cHHHHHHHHHHHHHHhcCHHHHHHHhhhc
Confidence 36999999999999999999999999999999998642 57899999999999999999999999843
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.6e-19 Score=154.71 Aligned_cols=65 Identities=52% Similarity=0.768 Sum_probs=60.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
.|||+||||+++|+.++||+|||+|+++||||+++. + .|.++|++|++||+||+||.+|+.||..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~----~a~~~f~~i~~Ay~vL~d~~~r~~YD~~ 67 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-E----EAQEKFKEISVAYEVLSDPEKRRIVDLG 67 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-H----HHHHHHHHHHHHHHHhchhhhhhhhhcc
Confidence 699999999999999999999999999999999863 2 6889999999999999999999999984
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.4e-19 Score=153.74 Aligned_cols=67 Identities=49% Similarity=0.811 Sum_probs=62.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.++||+|||+|+++||||+++..+ .+.++|++|++||+||+||.+|+.||..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~~~~~f~~~~~Ay~vL~d~~~r~~yD~~ 69 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK----EAEELFKEAAEAYEVLSDPKKRGIYDQY 69 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 479999999999999999999999999999999986543 5788999999999999999999999984
No 27
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.5e-19 Score=154.91 Aligned_cols=66 Identities=50% Similarity=0.826 Sum_probs=61.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
.|||+||||+++|++++||+|||+|+++||||+++..+ .+.++|++|++||+||+||.+|+.||..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 66 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDA----EAEKRFKEVSEAYEVLSDAQKRESYDRY 66 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch----HHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 48999999999999999999999999999999986543 6889999999999999999999999984
No 28
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=7.3e-19 Score=153.90 Aligned_cols=65 Identities=52% Similarity=0.806 Sum_probs=61.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~-----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~ 68 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE-----GADEKFKEISEAYEVLSDDQKRAQYDQF 68 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHhccHhHHHHHHhc
Confidence 6999999999999999999999999999999998642 5789999999999999999999999984
No 29
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.76 E-value=4.7e-18 Score=133.48 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=76.7
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCChhh
Q 030216 11 PSYYSVLGVSVH--SSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPEEEE 88 (181)
Q Consensus 11 ~d~Y~iLgv~~~--as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~~~~ 88 (181)
.|||+||||++. ++..+|+++||++++++|||++.. ...+..+.+.+..||+||+||+||.+|+.|+..+.+.....
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~-~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~~~~ 80 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT-LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINLND 80 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCCCCC
Confidence 589999999986 789999999999999999999864 33444566779999999999999999999998764332111
Q ss_pred h----hhhHHHHHHHHHHhHHHhhc
Q 030216 89 E----EGFSDFVQEMLSLMAEARKE 109 (181)
Q Consensus 89 ~----~~f~~~~~~~~~~~~~~~~~ 109 (181)
+ ..-.+|+.++++..+.+...
T Consensus 81 ~~~~~~~d~~fLme~me~rE~le~~ 105 (166)
T PRK01356 81 EKTRSLLSPLELSIFWDEMERIENT 105 (166)
T ss_pred ccccccCCHHHHHHHHHHHHHHHcC
Confidence 1 11257899888887766544
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.1e-18 Score=153.79 Aligned_cols=67 Identities=46% Similarity=0.771 Sum_probs=61.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
.|||+||||+++|+.++||+|||+|+++||||+++..+ .|.++|++|++||+||+||.+|+.||...
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g 69 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK----EAEEHFKEVNEAYEVLSNDDKRRRYDQFG 69 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----HHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 69999999999999999999999999999999986543 57899999999999999999999999843
No 31
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.75 E-value=1.2e-17 Score=132.39 Aligned_cols=113 Identities=19% Similarity=0.281 Sum_probs=82.8
Q ss_pred cccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCC-cchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCC
Q 030216 9 VQPSYYSVLGVSVH--SSVEEIRRAYRKLAMQWHPDRWTKT-PSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPE 85 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~--as~~eIk~aYr~l~~~~HPDk~~~~-~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~ 85 (181)
...|||+||||++. ++..+|+++||++++++|||+++.. ..++..+.+.+..||+||++|+||.+|+.|+..+.+..
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~ 83 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVD 83 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCC
Confidence 34799999999975 6889999999999999999999753 33344567778999999999999999999998664332
Q ss_pred hhh---hhhhHHHHHHHHHHhHHHhhcccCCCHHHHHHH
Q 030216 86 EEE---EEGFSDFVQEMLSLMAEARKEEKSYSMEELQTM 121 (181)
Q Consensus 86 ~~~---~~~f~~~~~~~~~~~~~~~~~~~~~s~ee~~~~ 121 (181)
... ...-.+|+.++++..+.+.......+.+++..+
T Consensus 84 ~~~e~~~~~d~~fLme~mE~rE~lee~~~~~d~~~L~~l 122 (176)
T PRK03578 84 VQAENNTAMPPAFLMQQMEWREAIEDARAARDVDALDAL 122 (176)
T ss_pred CccccCCCCCHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 211 112357999998877766544322233444333
No 32
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.3e-18 Score=143.87 Aligned_cols=68 Identities=44% Similarity=0.802 Sum_probs=64.1
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
...|+|+||||+++|+.++||++||+|++++|||+++.+| ++..+|++||+||.||+||.+|..||..
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P----~~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNP----EATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCc----hhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 4678999999999999999999999999999999998866 6899999999999999999999999984
No 33
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2e-18 Score=146.02 Aligned_cols=68 Identities=49% Similarity=0.792 Sum_probs=65.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
..|||.||||+.+++..+|++|||.++++||||||+++| .|.+.|+.|.+||+||+|+..|..||..+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP----~A~ekFq~L~eAy~VL~D~~~R~~YDk~~ 71 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP----QAAEKFQELSEAYEVLSDEESRAAYDKLR 71 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 689999999999999999999999999999999999987 69999999999999999999999999854
No 34
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.75 E-value=1.8e-17 Score=130.78 Aligned_cols=100 Identities=23% Similarity=0.337 Sum_probs=77.9
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCCc-chhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCChh
Q 030216 11 PSYYSVLGVSVH--SSVEEIRRAYRKLAMQWHPDRWTKTP-SLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPEEE 87 (181)
Q Consensus 11 ~d~Y~iLgv~~~--as~~eIk~aYr~l~~~~HPDk~~~~~-~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~~~ 87 (181)
.|||+||||++. ++..+|+++||++++++|||++...+ ..+..+.+.+..||+||+||+||.+|+.|+..+.+....
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~ 80 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA 80 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCCccc
Confidence 489999999986 68899999999999999999987633 344457889999999999999999999999866433211
Q ss_pred -h--hhhhHHHHHHHHHHhHHHhhcc
Q 030216 88 -E--EEGFSDFVQEMLSLMAEARKEE 110 (181)
Q Consensus 88 -~--~~~f~~~~~~~~~~~~~~~~~~ 110 (181)
+ ...-.+|+.++++..+.+....
T Consensus 81 ~~~~~~~d~efLme~me~rE~le~~~ 106 (171)
T PRK05014 81 HEQHTVRDTAFLMEQMELREELEDIE 106 (171)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHhhc
Confidence 1 1112578999998777665443
No 35
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2e-18 Score=151.57 Aligned_cols=73 Identities=41% Similarity=0.655 Sum_probs=66.7
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
...+.+||.+|+|+++||.+|||+|||++++.|||||+.. |..++.|++.|++|++||+||+||.+|++||..
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~d-pd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~ 77 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTD-PDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNY 77 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCC-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 3345699999999999999999999999999999999854 567778999999999999999999999999983
No 36
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.74 E-value=2.6e-17 Score=130.00 Aligned_cols=112 Identities=21% Similarity=0.322 Sum_probs=84.2
Q ss_pred cccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCCc-chhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCC
Q 030216 9 VQPSYYSVLGVSVH--SSVEEIRRAYRKLAMQWHPDRWTKTP-SLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPE 85 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~--as~~eIk~aYr~l~~~~HPDk~~~~~-~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~ 85 (181)
+..|||++|||++. .+..+|+++||++++++|||++...+ .++..+.+.+..||+||+||+||.+|+.|+..+.+..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~ 81 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHE 81 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCC
Confidence 46799999999977 56899999999999999999997643 3445678899999999999999999999998665432
Q ss_pred hhh--hhhhHHHHHHHHHHhHHHhhcccCCCHHHHHH
Q 030216 86 EEE--EEGFSDFVQEMLSLMAEARKEEKSYSMEELQT 120 (181)
Q Consensus 86 ~~~--~~~f~~~~~~~~~~~~~~~~~~~~~s~ee~~~ 120 (181)
... ...-.+|+.++++..+.+........++.+..
T Consensus 82 ~~~~~~~~d~~fLme~me~rE~le~~~~~~d~~~l~~ 118 (173)
T PRK00294 82 VPLEVTVHDPEFLLQQMQLREELEELQDEADLAGVAT 118 (173)
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 111 11125788888887777655544444444433
No 37
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.8e-18 Score=145.32 Aligned_cols=68 Identities=49% Similarity=0.755 Sum_probs=63.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCC
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYD 83 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~ 83 (181)
.|||+||||+++|+..|||+||++|+++||||.+... .+.++|++|.+||+||+|+.+|..||..+..
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-----~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-----EASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----chhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 3999999999999999999999999999999999765 7899999999999999999999999997654
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.6e-18 Score=148.97 Aligned_cols=67 Identities=48% Similarity=0.827 Sum_probs=61.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
.|||+||||+++|+.++||+|||+|+++||||+++.. ...|.++|++|++||+||+||.+|..||..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~ 69 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN---KAEAEEKFKEISEAYEVLSDPQKRRQYDQT 69 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hhHHHHHHHHHHHHHHHhcChhhhhhhccc
Confidence 6999999999999999999999999999999998543 226889999999999999999999999984
No 39
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4.4e-18 Score=149.41 Aligned_cols=67 Identities=51% Similarity=0.791 Sum_probs=62.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..|||+||||+++|+.+|||+|||+|+++||||+++..+ .+.++|++|++||++|+||.+|+.||..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~yD~~ 70 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK----EAEEKFKEAAEAYDVLSDPDKRSRYDQF 70 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 479999999999999999999999999999999986543 6889999999999999999999999983
No 40
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=4.9e-18 Score=148.51 Aligned_cols=65 Identities=48% Similarity=0.758 Sum_probs=60.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||++|+|+.+|+.||..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~yD~~ 67 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK-----DAEKKFKEINAAYDVLKDEQKRAAYDRF 67 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----CHHHHHHHHHHHHHHhhhHhHhhHHHhc
Confidence 6999999999999999999999999999999998532 5788999999999999999999999983
No 41
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.72 E-value=5.3e-18 Score=147.27 Aligned_cols=64 Identities=56% Similarity=0.862 Sum_probs=59.7
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 12 d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
|||+||||+++|+.++||+|||+|+++||||+++. + .+.++|++|++||+||+||.+|..||..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~~ 64 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-K----EAEEKFKEINEAYEVLSDPEKRAQYDQF 64 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-c----cHHHHHHHHHHHHHHhhChHHHHhhhhc
Confidence 79999999999999999999999999999999862 2 5788999999999999999999999983
No 42
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.72 E-value=5.5e-18 Score=144.66 Aligned_cols=65 Identities=40% Similarity=0.758 Sum_probs=60.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-----~~~~~f~~i~~Ay~~L~~~~kr~~yD~~ 68 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-----DAEARFKEVAEAWEVLSDEQRRAEYDQL 68 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 6999999999999999999999999999999997532 6889999999999999999999999973
No 43
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.72 E-value=1.2e-17 Score=109.20 Aligned_cols=59 Identities=49% Similarity=0.850 Sum_probs=53.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCch
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~ 72 (181)
+|||+||||+++++.++||++|+++++++|||++... ...+.+.|++|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~---~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD---KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999998642 2368899999999999999985
No 44
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=7.9e-18 Score=147.07 Aligned_cols=66 Identities=52% Similarity=0.775 Sum_probs=61.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||...
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~-----~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK-----GAAEKFAQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh-----hHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence 5899999999999999999999999999999998632 57899999999999999999999999843
No 45
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=9.9e-18 Score=146.67 Aligned_cols=65 Identities=45% Similarity=0.754 Sum_probs=60.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~a~~~f~~i~~Ay~vL~~~~~R~~yd~~ 67 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP-----GAEDRFKEINRAYEVLSDPETRARYDQF 67 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence 6999999999999999999999999999999998642 5788999999999999999999999984
No 46
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.70 E-value=2.5e-17 Score=155.10 Aligned_cols=70 Identities=31% Similarity=0.535 Sum_probs=63.7
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
..+..+||+||||+++|+..+||+|||+||++||||+++.. .|.++|+.|++||+||+||.+|+.||...
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-----~A~ekFq~I~EAYeVLSDp~kRk~YD~~G 638 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-----EGFHKFKKINEAYQILGDIDKKKMYNKFG 638 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 34568999999999999999999999999999999998653 47789999999999999999999999844
No 47
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.70 E-value=3.6e-17 Score=105.01 Aligned_cols=55 Identities=55% Similarity=0.910 Sum_probs=50.9
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCC
Q 030216 12 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSD 70 (181)
Q Consensus 12 d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsd 70 (181)
|||+||||+++++.++||++||++++++|||+.... ..+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~----~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD----PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999998653 3689999999999999986
No 48
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.1e-17 Score=137.06 Aligned_cols=126 Identities=22% Similarity=0.311 Sum_probs=97.9
Q ss_pred ccccCcccCcccccccC---CCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 4 ESERKVQPSYYSVLGVS---VHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 4 ~~~~~~~~d~Y~iLgv~---~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
+...|+..|+|.+|||+ ..+++.+|.++.++.+.+||||+..... ...+.+.|..|++||+||+|+.+|..||+.
T Consensus 36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g--~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG--NKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC--CCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 45778999999999997 6789999999999999999999984421 126788999999999999999999999985
Q ss_pred CC-----CCChhhhhhhHHHHHHHHHHhHHHhhcccCCCHHHHHH------HHHHHHhhccc
Q 030216 81 LY-----DPEEEEEEGFSDFVQEMLSLMAEARKEEKSYSMEELQT------MFMEMAQEFEQ 131 (181)
Q Consensus 81 l~-----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~s~ee~~~------~f~~~~~~f~~ 131 (181)
-+ .+.......|.+.+.++|+...++....+.+++....+ .|++||-+|.+
T Consensus 114 df~advppp~~~t~~~Ffe~w~pvFe~earFSkKqPvPsLg~~dss~keVe~FY~FW~nFdS 175 (379)
T COG5269 114 DFDADVPPPRIYTPDEFFEVWEPVFEREARFSKKQPVPSLGPSDSSLKEVEEFYEFWSNFDS 175 (379)
T ss_pred ccccCCCCccCCCchhHHHHHHHHHHhhhhccccCCCCCCCCchhHHHHHHHHHHHHHhccc
Confidence 43 33334567899999999999999987776554433322 35555555544
No 49
>PHA03102 Small T antigen; Reviewed
Probab=99.64 E-value=3e-16 Score=121.44 Aligned_cols=64 Identities=20% Similarity=0.377 Sum_probs=58.2
Q ss_pred ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 10 QPSYYSVLGVSVHS--SVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 10 ~~d~Y~iLgv~~~a--s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
...+|+||||+++| |.++||+|||++++++||||++ ..++|++|++||++|+|+.+|..||...
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg--------~~e~~k~in~Ay~~L~d~~~r~~yd~~g 69 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG--------DEEKMKELNTLYKKFRESVKSLRDLDGE 69 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc--------hhHHHHHHHHHHHHHhhHHHhccccccC
Confidence 35689999999999 9999999999999999999962 3568999999999999999999999854
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.1e-16 Score=123.45 Aligned_cols=68 Identities=50% Similarity=0.844 Sum_probs=63.2
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
...+||+||||+++|+..+|+++||++++++|||+++..+. .+.+.|+.|++||++|+|+.+|..||.
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~---~a~~~f~~i~~Ay~vLsd~~~r~~yd~ 71 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK---VAEEKFKEINEAYEILSDPERRAEYDK 71 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh---HHHHHHHHHHHHHHHhhCHHHHHHhhh
Confidence 46799999999999999999999999999999999987642 488999999999999999999999997
No 51
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.63 E-value=6.2e-16 Score=143.01 Aligned_cols=67 Identities=43% Similarity=0.655 Sum_probs=61.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCC
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLY 82 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~ 82 (181)
.|||+||||+++|+..+||+|||+|+++||||++... .+.++|++|++||++|+||.+|+.||....
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~-----eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP-----DAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----hHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 5999999999999999999999999999999998652 578899999999999999999999998543
No 52
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.62 E-value=5.5e-15 Score=116.81 Aligned_cols=108 Identities=18% Similarity=0.224 Sum_probs=82.3
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC-CcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCC-CCC-
Q 030216 11 PSYYSVLGVSVH--SSVEEIRRAYRKLAMQWHPDRWTK-TPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLY-DPE- 85 (181)
Q Consensus 11 ~d~Y~iLgv~~~--as~~eIk~aYr~l~~~~HPDk~~~-~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~-~~~- 85 (181)
.|||++|||++. .+..+|+++|++|++++|||+... ++.++..+.+....||+||.||+||.+|+.|-..+. +..
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~ 81 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQ 81 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCC
Confidence 589999999866 799999999999999999999976 445556788889999999999999999999999776 221
Q ss_pred --hhhhhhhHHHHHHHHHHhHHHhhcccCCCHHHH
Q 030216 86 --EEEEEGFSDFVQEMLSLMAEARKEEKSYSMEEL 118 (181)
Q Consensus 86 --~~~~~~f~~~~~~~~~~~~~~~~~~~~~s~ee~ 118 (181)
+.....-.+|+.++++..+.+.......+.+.+
T Consensus 82 ~~e~~~~~d~~fLme~ME~rE~lee~~~~~d~~~L 116 (173)
T PRK01773 82 NLEEKSTQDMAFLMQQMEWREQLEEIEQQQDEDAL 116 (173)
T ss_pred CcccccCCCHHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 111112347999999877766544333334444
No 53
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2e-15 Score=121.62 Aligned_cols=70 Identities=29% Similarity=0.540 Sum_probs=63.1
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 8 KVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
...-|+|+||||+++++..|||+|||+|++++||||.+... ..++.|..|.+||+.|+|+..|..|....
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~----~~e~~~~~I~KAY~aLTD~~sreN~ekYG 165 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEE----GDEEFFEAIAKAYQALTDKKSRENWEKYG 165 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcc----hhHHHHHHHHHHHHHhcchhhHHHHHHhC
Confidence 34569999999999999999999999999999999986632 56888999999999999999999999854
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.56 E-value=2.5e-15 Score=129.04 Aligned_cols=74 Identities=43% Similarity=0.696 Sum_probs=67.4
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
.....|||+||||.++|+..+|.+|||+++.+||||-+.. ..++..|+.+|.-|..|-+||+||++|+.+|.+.
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd-EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD-EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC-HHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 3457899999999999999999999999999999998854 5567789999999999999999999999999964
No 55
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.1e-15 Score=128.76 Aligned_cols=70 Identities=34% Similarity=0.501 Sum_probs=65.3
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCC
Q 030216 8 KVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLY 82 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~ 82 (181)
....|+|.||||+.+++.++||+.||++|...||||+..+ .|.+.|+.|+.||++|+|+.+|..||..+.
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~-----~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ 301 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP-----RAEEAFKKLQVAFEVIGDSVKRKEYDLELK 301 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh-----hHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 3478999999999999999999999999999999999754 799999999999999999999999999764
No 56
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.51 E-value=1.8e-13 Score=106.68 Aligned_cols=99 Identities=21% Similarity=0.274 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCC-cchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCChhh---hhhhHHHHH
Q 030216 22 HSSVEEIRRAYRKLAMQWHPDRWTKT-PSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPEEEE---EEGFSDFVQ 97 (181)
Q Consensus 22 ~as~~eIk~aYr~l~~~~HPDk~~~~-~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~~~~---~~~f~~~~~ 97 (181)
..+..+|+++||++++++|||+++.. ...+..+.+.+..||+||+||+||.+|+.|+..+.+..... ...-.+|+.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~~~~e~~~~~d~~fLm 81 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGIDLASEQHSVRDTAFLM 81 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCcccCCCCCHHHHH
Confidence 35789999999999999999998653 23444578899999999999999999999999775332111 112346888
Q ss_pred HHHHHhHHHhhcccCCCHHHHHH
Q 030216 98 EMLSLMAEARKEEKSYSMEELQT 120 (181)
Q Consensus 98 ~~~~~~~~~~~~~~~~s~ee~~~ 120 (181)
++++..+.+.......+.+++..
T Consensus 82 e~Me~rE~lee~~~~~d~~~L~~ 104 (157)
T TIGR00714 82 EQLELREELDEIEQAKDEARLES 104 (157)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHH
Confidence 88877666543333233333333
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.45 E-value=8e-14 Score=117.10 Aligned_cols=62 Identities=44% Similarity=0.655 Sum_probs=54.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcchhhHHHHHHHHHHHHHhhcCC
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTK---TPSLLGKAKVKFQEIQEAYSVLSD 70 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~---~~~~~~~a~~~f~~I~~AY~vLsd 70 (181)
...++|+||||++++|.++||++||+|+++||||+... ++...+.+.++|++|++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999999999999754 344456789999999999999974
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6.1e-14 Score=122.39 Aligned_cols=73 Identities=41% Similarity=0.738 Sum_probs=67.4
Q ss_pred ccCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 6 ERKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 6 ~~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
+..+..|||.||||.+.++..+||+|||++++.||||++..+ +.+++.+|++|-+||.||+||.+|.+||.+.
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags---q~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS---QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch---hHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 456788999999999999999999999999999999999766 4588999999999999999999999999964
No 59
>PHA02624 large T antigen; Provisional
Probab=99.43 E-value=1.5e-13 Score=125.57 Aligned_cols=93 Identities=16% Similarity=0.289 Sum_probs=70.4
Q ss_pred CCcccccCcccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHh-
Q 030216 1 MEAESERKVQPSYYSVLGVSVHS--SVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLY- 77 (181)
Q Consensus 1 m~~~~~~~~~~d~Y~iLgv~~~a--s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y- 77 (181)
|+.........++|+||||+++| +..+||+|||+++++||||+. .+.++|++|++||++|+|+.+|..|
T Consensus 1 MD~~Ltree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg--------Gdeekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 1 MDKTLSREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG--------GDEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred CcchhchHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--------CcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 44444555677999999999999 999999999999999999995 2367899999999999999999999
Q ss_pred -hccC-CCCChhhhhhhHHHHHHHHH
Q 030216 78 -DAGL-YDPEEEEEEGFSDFVQEMLS 101 (181)
Q Consensus 78 -D~~l-~~~~~~~~~~f~~~~~~~~~ 101 (181)
|..- ......+...+.+|+..++.
T Consensus 73 fd~~~~~~v~~~~~~~w~~ww~~f~~ 98 (647)
T PHA02624 73 FGTQDSSEIPTYGTPEWEQWWEEFNE 98 (647)
T ss_pred cccccccCCCCCccccHHHHHHHhhh
Confidence 4320 00112234455566665544
No 60
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.40 E-value=2.6e-13 Score=100.40 Aligned_cols=52 Identities=29% Similarity=0.412 Sum_probs=46.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcC
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLS 69 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLs 69 (181)
..++|+||||+++++.++||++||+|++++|||+. ...+.+++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg--------Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG--------GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--------CCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999984 23567899999999985
No 61
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2e-13 Score=112.58 Aligned_cols=71 Identities=41% Similarity=0.633 Sum_probs=63.8
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCC
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDP 84 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~ 84 (181)
...|.|+||||++.++..+|.+|||+|+++||||++.+. +..+.|..|..||++|.|...|..||-.+..+
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~-----e~k~~F~~iAtayeilkd~e~rt~ydyaldhp 101 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP-----ESKKLFVKIATAYEILKDNETRTQYDYALDHP 101 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc-----hhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence 456899999999999999999999999999999999765 45689999999999999999999999765443
No 62
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.2e-13 Score=110.41 Aligned_cols=69 Identities=46% Similarity=0.780 Sum_probs=61.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
..|||.||+|.+.|+.++|++||++++++||||+++.. ...+..+|++|.+||++|+|+.+|..||...
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~---~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~ 70 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP---KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYG 70 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc---hhhHHHHHhhhhccccccCCHHHhhhccccC
Confidence 46899999999999999999999999999999997544 2245558999999999999999999999954
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.28 E-value=3.8e-12 Score=112.08 Aligned_cols=72 Identities=29% Similarity=0.527 Sum_probs=65.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-CcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTK-TPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~-~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
--|+|||||+..+++..+||++||+|+.++||||.+. .+..+.+.++.+.+|++||..|+|...|..|....
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 4589999999999999999999999999999999876 45677788999999999999999999999999843
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.6e-10 Score=92.46 Aligned_cols=65 Identities=26% Similarity=0.503 Sum_probs=58.2
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHH
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTL 76 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~ 76 (181)
-+-|+|+||.|.|..+.++||+.||+|++..|||||+.+ .+.|...|--|.+||.+|-|+..|..
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd---~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD---AERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc---HHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 467899999999999999999999999999999999765 23788999999999999999986553
No 65
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=8.5e-08 Score=73.98 Aligned_cols=126 Identities=18% Similarity=0.337 Sum_probs=87.7
Q ss_pred cCcccCcccccccC--CCCCHHHHHHHHHHHHHHhCCCCCCCC-cchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCC
Q 030216 7 RKVQPSYYSVLGVS--VHSSVEEIRRAYRKLAMQWHPDRWTKT-PSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYD 83 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~--~~as~~eIk~aYr~l~~~~HPDk~~~~-~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~ 83 (181)
.....+||.++|.. ....+..++..|....+++|||+.... ......|.+....||+||.+|.||.+|+.|-..+..
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 34567899999864 566777788899999999999995442 222336888999999999999999999999987755
Q ss_pred CChhhhh--hhHHHHHHHHHHhHHHhhcccCCCH--------HHHHHHHHHHHhhcccC
Q 030216 84 PEEEEEE--GFSDFVQEMLSLMAEARKEEKSYSM--------EELQTMFMEMAQEFEQS 132 (181)
Q Consensus 84 ~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~s~--------ee~~~~f~~~~~~f~~~ 132 (181)
....+++ .-..|+.+|++..+.+........+ +.+.+....+...|++.
T Consensus 84 ~e~~sne~stDpe~Lmevle~~E~IS~~~De~~l~~lk~q~q~ri~q~~~qlge~~esk 142 (168)
T KOG3192|consen 84 QEQTSNELSTDPEFLMEVLEYHEAISEMDDEEDLKQLKSQNQERIAQCKQQLGEAFESK 142 (168)
T ss_pred CCCchhhhccCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3322221 2247899999877777654433322 33334444555566544
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.1e-07 Score=91.29 Aligned_cols=55 Identities=33% Similarity=0.545 Sum_probs=46.7
Q ss_pred CcccCcccccccC----CCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcC
Q 030216 8 KVQPSYYSVLGVS----VHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLS 69 (181)
Q Consensus 8 ~~~~d~Y~iLgv~----~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLs 69 (181)
-..-+.|+||.|+ +.-.++.||++|++|+.+|||||++ +-.++|.++|+||+.|.
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP-------EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP-------EGREMFERVNKAYELLS 1336 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc-------hHHHHHHHHHHHHHHHH
Confidence 3445689999997 3445688999999999999999995 45889999999999998
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.6e-07 Score=77.06 Aligned_cols=58 Identities=31% Similarity=0.547 Sum_probs=50.3
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHh-hcCCc
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYS-VLSDE 71 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~-vLsdp 71 (181)
+-..+|.||||..+|+.+++|.+|..|++++|||..... ...+.|++|.+||. ||+..
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~-----adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE-----ADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc-----ccHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999997553 45788999999999 77643
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=9.3e-07 Score=64.12 Aligned_cols=51 Identities=27% Similarity=0.360 Sum_probs=43.2
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCc
Q 030216 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71 (181)
Q Consensus 13 ~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp 71 (181)
.-.||||++.++.+.||.|+|++....|||+... .-.-.+||+|+++|...
T Consensus 58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS--------PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS--------PYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC--------HHHHHHHHHHHHHHhcc
Confidence 3459999999999999999999999999999843 33347899999999754
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=7.8e-05 Score=58.91 Aligned_cols=58 Identities=40% Similarity=0.603 Sum_probs=50.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcchhhHHHHHHHHHHHHHhhc
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTK---TPSLLGKAKVKFQEIQEAYSVL 68 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~---~~~~~~~a~~~f~~I~~AY~vL 68 (181)
.+.|.+|++....+..+|+++|+++...+|||+... .....+.+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 688999999999999999999999999999999765 2344557888999999999854
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00027 Score=55.84 Aligned_cols=73 Identities=27% Similarity=0.426 Sum_probs=57.7
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCCc-chhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCC
Q 030216 12 SYYSVLGVSVHS--SVEEIRRAYRKLAMQWHPDRWTKTP-SLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDP 84 (181)
Q Consensus 12 d~Y~iLgv~~~a--s~~eIk~aYr~l~~~~HPDk~~~~~-~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~ 84 (181)
+++..+|+.+.+ ..+.++..|+.+.+.+|||+....+ .....+.+.+..++.||.+|.+|.+|..|-..+.++
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g 77 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADG 77 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccc
Confidence 456666766544 4556999999999999999987633 333457788999999999999999999999876544
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.32 E-value=0.00026 Score=63.82 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=37.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcc---hhhHHHHHHHHHHHHHhhc
Q 030216 18 GVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPS---LLGKAKVKFQEIQEAYSVL 68 (181)
Q Consensus 18 gv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~---~~~~a~~~f~~I~~AY~vL 68 (181)
.|..-+++++||++|||.++.+||||.++.+. .+-.+++.|-.+++|+..-
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 45566799999999999999999999987431 2224566666777776543
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.32 E-value=0.03 Score=42.22 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=37.0
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCch
Q 030216 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72 (181)
Q Consensus 13 ~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~ 72 (181)
-..||+|++..+.++|.+.|.+|....+|++.. ..-.=..|..|.+.|....
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG--------SfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGG--------SFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC--------CHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999862 2333357888888886444
No 73
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=93.87 E-value=0.14 Score=37.81 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCch
Q 030216 21 VHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDER 72 (181)
Q Consensus 21 ~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~ 72 (181)
...+..+++.|.|...++.|||.....|.+++.-++-++.|+.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 3456778999999999999999998888777777788889988888887654
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=89.39 E-value=1.1 Score=29.05 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=24.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHH
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAM 37 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~ 37 (181)
.+.|++|||+++++.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999888
No 75
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=88.00 E-value=0.45 Score=40.93 Aligned_cols=58 Identities=29% Similarity=0.465 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 22 HSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 22 ~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
.++..+|+.+|+..++.+||++............+.+++|.+||.||.+..+|...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 3567889999999999999998742000111456779999999999998665555554
No 76
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=79.55 E-value=4.4 Score=32.63 Aligned_cols=40 Identities=33% Similarity=0.392 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCc
Q 030216 20 SVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71 (181)
Q Consensus 20 ~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp 71 (181)
+++|+.+||.+|+.++..+|--| .+.-.+|-.||+.+.-.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd------------~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD------------EKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHHHHH
Confidence 47899999999999999999333 33456788999855433
No 77
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=49.05 E-value=11 Score=17.28 Aligned_cols=13 Identities=46% Similarity=0.864 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhcC
Q 030216 57 KFQEIQEAYSVLS 69 (181)
Q Consensus 57 ~f~~I~~AY~vLs 69 (181)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677788887764
No 78
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.00 E-value=30 Score=26.07 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=27.9
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 030216 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRW 44 (181)
Q Consensus 13 ~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~ 44 (181)
--.||+|+...+.++|.+.|-.|-....+-|.
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskG 92 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKG 92 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccC
Confidence 35799999999999999999999998766665
No 79
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=41.83 E-value=34 Score=18.82 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 030216 24 SVEEIRRAYRKLAMQWHP 41 (181)
Q Consensus 24 s~~eIk~aYr~l~~~~HP 41 (181)
..++.|.+-|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347789999999999993
No 80
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=38.65 E-value=1.4e+02 Score=20.94 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=26.5
Q ss_pred ccCCCCCH-HHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 18 GVSVHSSV-EEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 18 gv~~~as~-~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
|++|+... .+|-+.++.++..+++. ..+.+..|.+.| +.||.-+..|+.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~-----------~~~~~~~l~~~y--~~~~~~~~~~~~ 100 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG-----------DPELLRGLAQMY--VEDPRFAAMYDK 100 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS--------------HHHHHHHHHHT--TSTHHHHHHHG-
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHH--HcCHHHHhhccc
Confidence 34444432 23666666666666652 134566777777 677777777774
No 81
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=36.28 E-value=97 Score=20.12 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 13 ~~~~r~~~~~~~p~~~---------~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 13 SKRHRRKVLQEYPLKE---------NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556777778899852 35667899999999998776554443
No 82
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=34.36 E-value=1.1e+02 Score=18.71 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
.+.++..++.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 12 ~~~~~~~~~~~~~~~~---------~~~i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 12 SQEHRAEVKAENPGLS---------VGEISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHHCcCCC---------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4567777888899842 4667889999999998765544444
No 83
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=31.24 E-value=1.7e+02 Score=20.07 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=25.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCC
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPD 42 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPD 42 (181)
.+--+++++.+-+++.||+.|-++.++++.--
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGt 34 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGT 34 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCC
Confidence 34457889999999999999988888876433
No 84
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=29.86 E-value=1.6e+02 Score=19.23 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 28 IRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 28 Ik~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
-.+.+|..++.-||+.. ..+..+.|.+.|..|++..+...++
T Consensus 12 f~~~~r~~~~~~~p~~~---------~~eisk~~g~~Wk~ls~eeK~~y~~ 53 (77)
T cd01389 12 YRQDKHAQLKTENPGLT---------NNEISRIIGRMWRSESPEVKAYYKE 53 (77)
T ss_pred HHHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 35677888888899863 4667789999999998666544333
No 85
>COG2879 Uncharacterized small protein [Function unknown]
Probab=29.67 E-value=1.1e+02 Score=20.19 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHH
Q 030216 30 RAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEA 64 (181)
Q Consensus 30 ~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~A 64 (181)
..|-.-.++.|||+.+-+ ..+.|.+-++|
T Consensus 26 dnYVehmr~~hPd~p~mT------~~EFfrec~da 54 (65)
T COG2879 26 DNYVEHMRKKHPDKPPMT------YEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHHhCcCCCccc------HHHHHHHHHHh
Confidence 356777889999997543 35566655544
No 86
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=29.23 E-value=13 Score=24.38 Aligned_cols=30 Identities=30% Similarity=0.641 Sum_probs=20.8
Q ss_pred ccCcccccccCCCCCHHHH-HHHHHHHHHHhCCCC
Q 030216 10 QPSYYSVLGVSVHSSVEEI-RRAYRKLAMQWHPDR 43 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eI-k~aYr~l~~~~HPDk 43 (181)
+..++++||++ ++++ ......+....|||-
T Consensus 5 s~~~~~i~G~~----~~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYS----PEEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-----HHHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCC----HHHhccCCHHHHHhhcCHHH
Confidence 45688999984 4666 666777888999995
No 87
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=26.13 E-value=1.1e+02 Score=19.13 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=19.6
Q ss_pred ccccccCCCCCHHHHHHHHHHHHH
Q 030216 14 YSVLGVSVHSSVEEIRRAYRKLAM 37 (181)
Q Consensus 14 Y~iLgv~~~as~~eIk~aYr~l~~ 37 (181)
|.+=|+.|..+++|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456689999999999998887554
No 88
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=25.80 E-value=1.7e+02 Score=18.04 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 30 RAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 30 ~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
+..|..++.-||+. ...+..+.|.+.|..|++..+....+
T Consensus 13 ~~~r~~~~~~~p~~---------~~~~i~~~~~~~W~~ls~~eK~~y~~ 52 (66)
T cd01390 13 QEQRPKLKKENPDA---------SVTEVTKILGEKWKELSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHCcCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34566667778884 24677899999999998666544433
No 89
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.77 E-value=2.8e+02 Score=19.08 Aligned_cols=32 Identities=19% Similarity=0.032 Sum_probs=25.3
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 030216 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRW 44 (181)
Q Consensus 13 ~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~ 44 (181)
--.+.|+.|.+|.+||+.|=.+.+++..=-..
T Consensus 5 I~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~ 36 (78)
T PF10041_consen 5 IKTLRNFEPPATDEEIRAAALQYVRKVSGFRK 36 (78)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHccCCC
Confidence 34566888999999999999999998854433
No 90
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=20.57 E-value=91 Score=22.23 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=18.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHH
Q 030216 16 VLGVSVHSSVEEIRRAYRKLAM 37 (181)
Q Consensus 16 iLgv~~~as~~eIk~aYr~l~~ 37 (181)
+|-|+++|+..+||+|..++--
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF~ 46 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELFG 46 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 5678999999999999988754
Done!