Query 030216
Match_columns 181
No_of_seqs 292 out of 2165
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 16:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 4E-22 1.4E-26 137.0 7.4 72 7-82 3-74 (79)
2 2yua_A Williams-beuren syndrom 99.9 4.5E-22 1.5E-26 142.6 7.7 74 6-83 12-85 (99)
3 1wjz_A 1700030A21RIK protein; 99.9 2.8E-22 9.6E-27 142.0 5.9 78 6-83 11-90 (94)
4 2ej7_A HCG3 gene; HCG3 protein 99.9 1.2E-21 4.1E-26 135.5 7.4 74 6-82 4-77 (82)
5 2ctp_A DNAJ homolog subfamily 99.8 9E-22 3.1E-26 135.0 6.5 71 7-82 3-73 (78)
6 1hdj_A Human HSP40, HDJ-1; mol 99.8 1.5E-21 5.2E-26 133.5 7.2 67 10-81 2-68 (77)
7 1bq0_A DNAJ, HSP40; chaperone, 99.8 9.1E-22 3.1E-26 141.9 5.9 69 10-82 2-70 (103)
8 2cug_A Mkiaa0962 protein; DNAJ 99.8 2E-21 7E-26 136.3 6.7 70 8-82 14-83 (88)
9 2ctr_A DNAJ homolog subfamily 99.8 2E-21 6.7E-26 136.4 6.6 69 8-81 4-72 (88)
10 3hho_A CO-chaperone protein HS 99.8 5.9E-21 2E-25 149.8 10.0 106 9-114 2-113 (174)
11 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.2E-21 4.2E-26 142.5 4.7 74 8-82 12-86 (109)
12 2och_A Hypothetical protein DN 99.8 4.6E-21 1.6E-25 130.0 7.1 67 8-81 5-71 (73)
13 2ctq_A DNAJ homolog subfamily 99.8 3.5E-21 1.2E-25 140.9 6.9 71 7-81 16-86 (112)
14 3bvo_A CO-chaperone protein HS 99.8 6.8E-21 2.3E-25 153.3 8.1 102 9-110 41-148 (207)
15 2dmx_A DNAJ homolog subfamily 99.8 4.3E-21 1.5E-25 135.6 5.8 72 7-81 5-76 (92)
16 2ctw_A DNAJ homolog subfamily 99.8 8E-21 2.7E-25 138.4 7.3 70 8-81 14-83 (109)
17 1fpo_A HSC20, chaperone protei 99.8 1.1E-20 3.6E-25 148.0 8.4 97 11-107 1-103 (171)
18 2lgw_A DNAJ homolog subfamily 99.8 7.9E-21 2.7E-25 136.3 6.5 68 11-81 2-69 (99)
19 2o37_A Protein SIS1; HSP40, J- 99.8 1.3E-20 4.3E-25 133.4 6.6 67 8-81 5-71 (92)
20 2l6l_A DNAJ homolog subfamily 99.8 3.9E-20 1.3E-24 142.3 7.5 76 6-81 5-82 (155)
21 2ys8_A RAB-related GTP-binding 99.8 4.7E-20 1.6E-24 130.0 4.3 63 9-76 25-87 (90)
22 3uo3_A J-type CO-chaperone JAC 99.8 1.1E-19 3.9E-24 143.4 5.7 98 6-110 6-118 (181)
23 3apq_A DNAJ homolog subfamily 99.8 2.3E-19 7.8E-24 142.4 5.9 67 11-81 2-68 (210)
24 1faf_A Large T antigen; J doma 99.8 1.2E-19 4E-24 125.2 1.6 71 1-79 1-73 (79)
25 1iur_A KIAA0730 protein; DNAJ 99.7 1.1E-18 3.7E-23 122.7 2.5 65 7-74 12-76 (88)
26 2pf4_E Small T antigen; PP2A, 99.7 1.8E-19 6.1E-24 141.2 -1.8 73 1-81 1-75 (174)
27 1n4c_A Auxilin; four helix bun 99.7 1.5E-18 5.1E-23 136.8 2.9 69 8-77 114-182 (182)
28 1gh6_A Large T antigen; tumor 99.7 2.1E-19 7.3E-24 132.0 -2.0 63 9-79 6-70 (114)
29 3lz8_A Putative chaperone DNAJ 99.7 5.4E-19 1.8E-23 151.1 0.0 68 8-80 25-92 (329)
30 3ag7_A Putative uncharacterize 99.7 2.3E-18 7.7E-23 125.0 3.0 65 7-72 37-104 (106)
31 2qwo_B Putative tyrosine-prote 99.7 9.6E-18 3.3E-22 118.7 3.0 59 11-70 33-91 (92)
32 2guz_A Mitochondrial import in 99.7 1.5E-17 5E-22 112.3 1.3 57 10-74 13-70 (71)
33 3apo_A DNAJ homolog subfamily 99.6 1.4E-16 4.7E-21 148.0 0.5 71 7-81 17-87 (780)
34 2y4t_A DNAJ homolog subfamily 99.2 1.1E-11 3.9E-16 104.5 5.2 70 10-80 381-450 (450)
35 2guz_B Mitochondrial import in 99.0 3.3E-10 1.1E-14 74.9 3.4 52 12-71 5-59 (65)
36 2pzi_A Probable serine/threoni 91.0 0.15 5E-06 46.3 3.6 48 8-67 626-675 (681)
37 4a3n_A Transcription factor SO 39.0 64 0.0022 19.7 4.9 39 29-76 14-52 (71)
38 1i11_A Transcription factor SO 32.7 94 0.0032 19.6 5.3 42 29-79 16-57 (81)
39 2crj_A SWI/SNF-related matrix- 32.0 1.1E+02 0.0036 20.0 5.6 42 29-79 19-60 (92)
40 3nm9_A HMG-D, high mobility gr 32.0 87 0.003 19.4 4.7 39 29-79 15-53 (73)
41 2d7l_A WD repeat and HMG-box D 31.8 74 0.0025 20.6 4.4 43 29-79 17-59 (81)
42 3f27_D Transcription factor SO 30.3 1E+02 0.0036 19.4 5.2 38 29-75 18-55 (83)
43 1qqr_A Streptokinase domain B; 29.2 29 0.00098 25.4 2.1 31 13-43 34-64 (138)
44 2cs1_A PMS1 protein homolog 1; 28.1 1.1E+02 0.0037 19.9 4.9 42 29-79 19-60 (92)
45 1wgf_A Upstream binding factor 27.5 97 0.0033 20.1 4.5 41 29-78 32-72 (90)
46 1gt0_D Transcription factor SO 26.2 1.2E+02 0.0041 19.0 4.7 40 29-77 14-53 (80)
47 4euw_A Transcription factor SO 25.0 1.4E+02 0.0047 20.1 5.0 41 28-77 40-80 (106)
48 2e6o_A HMG box-containing prot 24.4 1.3E+02 0.0045 19.3 4.7 41 28-78 28-68 (87)
49 1hry_A Human SRY; DNA, DNA-bin 24.3 1E+02 0.0034 19.1 4.0 40 29-78 16-55 (76)
50 1j46_A SRY, sex-determining re 23.9 1.5E+02 0.005 18.9 5.0 40 29-78 16-55 (85)
51 3u2b_C Transcription factor SO 23.4 1.4E+02 0.0048 18.5 4.9 40 29-78 14-53 (79)
52 2co9_A Thymus high mobility gr 23.4 1.4E+02 0.0049 19.8 4.9 42 29-79 29-70 (102)
53 1ug2_A 2610100B20RIK gene prod 23.2 49 0.0017 22.6 2.3 23 22-44 67-89 (95)
54 1wz6_A HMG-box transcription f 23.2 1.2E+02 0.0041 19.1 4.3 39 29-76 19-57 (82)
55 2lef_A LEF-1 HMG, protein (lym 22.6 1.6E+02 0.0053 18.8 5.0 40 29-78 14-53 (86)
56 1hme_A High mobility group pro 21.9 1.5E+02 0.0051 18.3 5.4 39 29-76 18-56 (77)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4e-22 Score=136.98 Aligned_cols=72 Identities=47% Similarity=0.699 Sum_probs=65.5
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCC
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLY 82 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~ 82 (181)
.....|||+||||+++++.++||++||+|++++|||+++..+ .+.+.|++|++||++|+||.+|..||..+.
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCT----THHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 356789999999999999999999999999999999997543 578999999999999999999999998653
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-22 Score=142.65 Aligned_cols=74 Identities=31% Similarity=0.551 Sum_probs=67.1
Q ss_pred ccCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCC
Q 030216 6 ERKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYD 83 (181)
Q Consensus 6 ~~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~ 83 (181)
......|||+||||+++++.++||+|||+|+++||||++...+ .+.++|++|++||+||+||.+|..||..+..
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA----EAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCS----HHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 3456789999999999999999999999999999999997544 6889999999999999999999999997753
No 3
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.86 E-value=2.8e-22 Score=141.98 Aligned_cols=78 Identities=26% Similarity=0.575 Sum_probs=68.6
Q ss_pred ccCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--CcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCC
Q 030216 6 ERKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTK--TPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYD 83 (181)
Q Consensus 6 ~~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~--~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~ 83 (181)
......|||+||||+++++.++||+|||+|+++||||+++. ++.....+.+.|++|++||+||+||.+|..||..+..
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 34567899999999999999999999999999999999864 2334457899999999999999999999999997754
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=135.53 Aligned_cols=74 Identities=42% Similarity=0.704 Sum_probs=65.7
Q ss_pred ccCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCC
Q 030216 6 ERKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLY 82 (181)
Q Consensus 6 ~~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~ 82 (181)
......|||+||||+++++.++||+|||+|+++||||+++.. .+.+.+.|++|++||++|+||.+|..||....
T Consensus 4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 4 GSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN---KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp CCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT---HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 344568999999999999999999999999999999998653 23678899999999999999999999998653
No 5
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=9e-22 Score=135.01 Aligned_cols=71 Identities=39% Similarity=0.624 Sum_probs=64.5
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCC
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLY 82 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~ 82 (181)
.....|||+||||+++++.++||+|||+|++++|||++... .+.+.|++|++||++|+||.+|..||..+.
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-----GATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH-----HHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 34578999999999999999999999999999999998642 678999999999999999999999998653
No 6
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.85 E-value=1.5e-21 Score=133.55 Aligned_cols=67 Identities=48% Similarity=0.763 Sum_probs=62.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
..|||+||||+++++.++||+|||+|++++|||++... .+.+.|+.|++||++|+||.+|..||...
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 68 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP-----GAEEKFKEIAEAYDVLSDPRKREIFDRYG 68 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT-----THHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 36899999999999999999999999999999998653 57899999999999999999999999854
No 7
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.85 E-value=9.1e-22 Score=141.92 Aligned_cols=69 Identities=48% Similarity=0.789 Sum_probs=63.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCC
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLY 82 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~ 82 (181)
..|||+||||+++++.++||+|||+|+++||||+++..+ .+.++|++|++||+||+||.+|..||....
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTC----THHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 469999999999999999999999999999999987543 578899999999999999999999999653
No 8
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2e-21 Score=136.33 Aligned_cols=70 Identities=43% Similarity=0.661 Sum_probs=64.1
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCC
Q 030216 8 KVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLY 82 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~ 82 (181)
....|||+||||+++++.++||+|||+|++++|||++... .+.+.|++|++||++|+||.+|..||....
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP-----GAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST-----THHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----hHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 4567999999999999999999999999999999998653 578999999999999999999999998653
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=136.41 Aligned_cols=69 Identities=43% Similarity=0.706 Sum_probs=63.4
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 8 KVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
....|||+||||+++++.++||+|||+|++++|||++... .+.+.|++|++||++|+||.+|..||..+
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP-----DAEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSH-----HHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----HHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 4578999999999999999999999999999999998632 68899999999999999999999999854
No 10
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.84 E-value=5.9e-21 Score=149.81 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=81.9
Q ss_pred cccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCCCc-chhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCC
Q 030216 9 VQPSYYSVLGVSVHSS--VEEIRRAYRKLAMQWHPDRWTKTP-SLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPE 85 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as--~~eIk~aYr~l~~~~HPDk~~~~~-~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~ 85 (181)
..+|||+||||+++++ ..+||++||+|+++||||+++..+ ..+..+.+.|+.|++||+||+||.+|..||..+.+..
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~ 81 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIE 81 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccCCC
Confidence 3579999999999987 999999999999999999997643 3344588999999999999999999999998664332
Q ss_pred hhh---hhhhHHHHHHHHHHhHHHhhcccCCC
Q 030216 86 EEE---EEGFSDFVQEMLSLMAEARKEEKSYS 114 (181)
Q Consensus 86 ~~~---~~~f~~~~~~~~~~~~~~~~~~~~~s 114 (181)
... ...-.+|+.++++..+.+........
T Consensus 82 ~~~e~~~~~d~~fLme~me~rE~le~~~~~~d 113 (174)
T 3hho_A 82 MNAEQQTLQDPMFLMEQMELREELESVTACAD 113 (174)
T ss_dssp CC----CCCCHHHHHHHHHHHHHHHHHTSSSS
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 211 11224788888887777765544434
No 11
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.84 E-value=1.2e-21 Score=142.53 Aligned_cols=74 Identities=32% Similarity=0.417 Sum_probs=66.6
Q ss_pred CcccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccCC
Q 030216 8 KVQPSYYSVLGVSVHS-SVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLY 82 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~a-s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~ 82 (181)
....|||+||||++++ +.++||+|||+|++++|||+++. +...+.+.+.|++|++||++|+||.+|..||..+.
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~-~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN-KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 4578999999999999 99999999999999999999865 34445789999999999999999999999999653
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.84 E-value=4.6e-21 Score=129.96 Aligned_cols=67 Identities=45% Similarity=0.822 Sum_probs=60.6
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 8 KVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
....+||+||||+++++.++||++||+|++++|||+++. +.+.|++|++||++|+||.+|..||...
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~-------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD-------GAEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT-------CHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC-------HHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 356799999999999999999999999999999999853 2578999999999999999999999853
No 13
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-21 Score=140.90 Aligned_cols=71 Identities=35% Similarity=0.572 Sum_probs=64.7
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
.....|||+||||+++++.++||+|||+|+++||||+++..+ .+.+.|++|++||+||+||.+|..||..+
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 86 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP----KAVETFQKLQKAKEILTNEESRARYDHWR 86 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCS----THHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence 345689999999999999999999999999999999997544 58899999999999999999999999843
No 14
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.83 E-value=6.8e-21 Score=153.27 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=78.7
Q ss_pred cccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCCc-chhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCC
Q 030216 9 VQPSYYSVLGVSVH--SSVEEIRRAYRKLAMQWHPDRWTKTP-SLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPE 85 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~--as~~eIk~aYr~l~~~~HPDk~~~~~-~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~ 85 (181)
...|||+||||++. ++..+||++||+|+++|||||++..+ .++..+.++|++|++||+||+||.+|+.||..+.+..
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~ 120 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIE 120 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCCC
Confidence 46799999999986 79999999999999999999997643 3455678899999999999999999999997543321
Q ss_pred --hh-hhhhhHHHHHHHHHHhHHHhhcc
Q 030216 86 --EE-EEEGFSDFVQEMLSLMAEARKEE 110 (181)
Q Consensus 86 --~~-~~~~f~~~~~~~~~~~~~~~~~~ 110 (181)
++ ....-.+|+.++++..+.+....
T Consensus 121 ~~~e~~~~~d~~fLme~me~~E~le~~~ 148 (207)
T 3bvo_A 121 IPERTDYEMDRQFLIEIMEINEKLAEAE 148 (207)
T ss_dssp CCSSCSSSSCHHHHHHHHHHHHHHHHCC
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHcc
Confidence 11 11112358888887776665443
No 15
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-21 Score=135.58 Aligned_cols=72 Identities=47% Similarity=0.811 Sum_probs=64.7
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
.....|||+||||+++++.++||++||+|+++||||+++... +.+.+.|++|++||++|+||.+|..||...
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK---EEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCS---HHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccH---HHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 345679999999999999999999999999999999986542 368899999999999999999999999854
No 16
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=8e-21 Score=138.43 Aligned_cols=70 Identities=39% Similarity=0.704 Sum_probs=64.1
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 8 KVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
....+||+||||+++++.++||+|||+|++++|||+++..+ .+.+.|++|++||+||+||.+|..||...
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g 83 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP----EAADKFKEINNAHAILTDATKRNIYDKYG 83 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCH----HHHHHHHHHHHHHHHHTCHHHHHHHHHTC
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 45679999999999999999999999999999999997543 67899999999999999999999999854
No 17
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.83 E-value=1.1e-20 Score=148.01 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=76.9
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCCc-chhhHHHHHHHHHHHHHhhcCCchHHHHhhccCCCCChh
Q 030216 11 PSYYSVLGVSVHS--SVEEIRRAYRKLAMQWHPDRWTKTP-SLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPEEE 87 (181)
Q Consensus 11 ~d~Y~iLgv~~~a--s~~eIk~aYr~l~~~~HPDk~~~~~-~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l~~~~~~ 87 (181)
.|||+||||++++ +..+||++||+|+++||||+++..+ ..+..+.++|+.|++||+||+||.+|..||..+.+....
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~ 80 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLA 80 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCcc
Confidence 3899999999999 9999999999999999999997643 345567889999999999999999999999866433221
Q ss_pred hh---hhhHHHHHHHHHHhHHHh
Q 030216 88 EE---EGFSDFVQEMLSLMAEAR 107 (181)
Q Consensus 88 ~~---~~f~~~~~~~~~~~~~~~ 107 (181)
.+ ..-.+|+.++++..+.+.
T Consensus 81 ~e~~~~~d~~fLme~me~rE~le 103 (171)
T 1fpo_A 81 SEQHTVRDTAFLMEQLELREELD 103 (171)
T ss_dssp CSSSCCSCHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHH
Confidence 11 112367887777655554
No 18
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.82 E-value=7.9e-21 Score=136.34 Aligned_cols=68 Identities=46% Similarity=0.789 Sum_probs=62.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
.|||+||||+++++.++||+|||+|++++|||+++... +.+.+.|++|++||++|+||.+|..||...
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~---~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g 69 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNK---EFAEKKFKEVAEAYEVLSDKHKREIYDRYG 69 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCC---HHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccH---HHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 58999999999999999999999999999999986542 368899999999999999999999999843
No 19
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.3e-20 Score=133.37 Aligned_cols=67 Identities=39% Similarity=0.681 Sum_probs=61.1
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 8 KVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
....|||+||||+++++.++||+|||+|+++||||+++.. .+.|++|++||+||+||.+|..||...
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 71 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-------TEKFKEISEAFEILNDPQKREIYDQYG 71 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-------HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-------HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence 4568999999999999999999999999999999998543 458999999999999999999999843
No 20
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=142.26 Aligned_cols=76 Identities=26% Similarity=0.568 Sum_probs=67.4
Q ss_pred ccCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCc--chhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 6 ERKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTP--SLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 6 ~~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~--~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
+....+|||+||||+++++.++||+|||+|++++||||++..+ ..++.+.+.|++|++||+||+||.+|+.||..+
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455689999999999999999999999999999999997643 345568899999999999999999999999844
No 21
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-20 Score=130.02 Aligned_cols=63 Identities=29% Similarity=0.434 Sum_probs=57.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHH
Q 030216 9 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTL 76 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~ 76 (181)
...|||+||||+++++.++||+|||+|+++||||+++.. .+.+.|++|++||++|+||.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP-----GSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCT-----THHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCcccccC
Confidence 458999999999999999999999999999999999653 578899999999999999998764
No 22
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.78 E-value=1.1e-19 Score=143.36 Aligned_cols=98 Identities=20% Similarity=0.413 Sum_probs=76.8
Q ss_pred ccCcccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 6 ERKVQPSYYSVL------GVSV-HSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 6 ~~~~~~d~Y~iL------gv~~-~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
+.....|||+|| |+++ +++..+||++||+|+++||||+++. +.++|+.|++||+||+||.+|..||
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-------a~~~f~~i~~AY~vL~dp~~R~~Yd 78 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-------GSEQSSTLNQAYHTLKDPLRRSQYM 78 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-------CSSGGGSHHHHHHHHHSHHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-------HHHHHHHHHHHHHHHcChHHHHHHH
Confidence 455678999999 4654 8999999999999999999999854 4677999999999999999999999
Q ss_pred ccC-CCCChhhh-------hhhHHHHHHHHHHhHHHhhcc
Q 030216 79 AGL-YDPEEEEE-------EGFSDFVQEMLSLMAEARKEE 110 (181)
Q Consensus 79 ~~l-~~~~~~~~-------~~f~~~~~~~~~~~~~~~~~~ 110 (181)
..+ .+.....+ ..-.+|+.++++..+.+....
T Consensus 79 ~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~ 118 (181)
T 3uo3_A 79 LKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMD 118 (181)
T ss_dssp HHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCccccccccccccCCHHHHHHHHHHHHHHHhcc
Confidence 966 33322111 123578899888777776543
No 23
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.77 E-value=2.3e-19 Score=142.42 Aligned_cols=67 Identities=45% Similarity=0.702 Sum_probs=62.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
.|||+||||+++|+.++||+|||+|++++|||+++..+ .+.++|++|++||++|+||.+|+.||...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~----~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~ 68 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYG 68 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCT----THHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence 58999999999999999999999999999999997554 58899999999999999999999999844
No 24
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.75 E-value=1.2e-19 Score=125.15 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=61.1
Q ss_pred CCcccccCcccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 1 MEAESERKVQPSYYSVLGVSVH--SSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 1 m~~~~~~~~~~d~Y~iLgv~~~--as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
|+.........++|+||||+++ ++.++||+|||+|++++|||++. ..++|++|++||++|+|+.+|..++
T Consensus 1 md~~~~~~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~--------~~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 1 MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG--------SHALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp CCCCCCHHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC--------CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcccccchhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--------CHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4444455566789999999999 99999999999999999999973 3578999999999999999998855
Q ss_pred c
Q 030216 79 A 79 (181)
Q Consensus 79 ~ 79 (181)
-
T Consensus 73 ~ 73 (79)
T 1faf_A 73 L 73 (79)
T ss_dssp C
T ss_pred c
Confidence 4
No 25
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.72 E-value=1.1e-18 Score=122.68 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=57.4
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHH
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKR 74 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R 74 (181)
.....++|+||||+++|+.++||+|||+|+++||||+++..+ +.+.++|++|++||++|++...|
T Consensus 12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~---~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH---DIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH---HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch---HHHHHHHHHHHHHHHHHHhhccc
Confidence 344578999999999999999999999999999999986542 36889999999999999998766
No 26
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.72 E-value=1.8e-19 Score=141.21 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=61.0
Q ss_pred CCcccccCcccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 1 MEAESERKVQPSYYSVLGVSVHSS--VEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 1 m~~~~~~~~~~d~Y~iLgv~~~as--~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
|+.........|||+||||+++|+ .++||+|||++++++|||+++. .++|++|++||++|+||.+|+.||
T Consensus 1 MD~~l~~~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--------~e~F~~I~~AYevLsdp~kR~~YD 72 (174)
T 2pf4_E 1 MDKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNTLYKKMEDGVKYAHQP 72 (174)
T ss_dssp CTTTSCHHHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--------CTTTTHHHHHHHHHHHHHHHHTSC
T ss_pred CcchhcccccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--------HHHHHHHHHHHHHhCCHHHHHHHh
Confidence 444445556689999999999998 6999999999999999999743 357999999999999999999999
Q ss_pred ccC
Q 030216 79 AGL 81 (181)
Q Consensus 79 ~~l 81 (181)
...
T Consensus 73 ~~G 75 (174)
T 2pf4_E 73 DFG 75 (174)
T ss_dssp GGG
T ss_pred ccC
Confidence 843
No 27
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.72 E-value=1.5e-18 Score=136.78 Aligned_cols=69 Identities=26% Similarity=0.468 Sum_probs=60.8
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHh
Q 030216 8 KVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLY 77 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y 77 (181)
+...|||+||||++.|+.++||+|||+++++|||||+...+. ...+.+.|++|++||+||+||.+|..|
T Consensus 114 ~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~-e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 114 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY-EQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTT-HHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcch-HHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 334699999999999999999999999999999999976432 124889999999999999999999877
No 28
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.71 E-value=2.1e-19 Score=132.00 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=57.9
Q ss_pred cccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 9 VQPSYYSVLGVSVHSSV--EEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 9 ~~~d~Y~iLgv~~~as~--~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
...+||+||||+++++. ++||+|||+|++++||||++. .++|++|++||+||+||.+|+.||.
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--------~e~f~~I~~AYevL~d~~~R~~~~~ 70 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNTLYKKMEDGVKYAHQPD 70 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--------TTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--------HHHHHHHHHHHHHHCCHHHHHHhhh
Confidence 45689999999999999 999999999999999999743 4679999999999999999999996
No 29
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.71 E-value=5.4e-19 Score=151.06 Aligned_cols=68 Identities=38% Similarity=0.696 Sum_probs=0.0
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 8 KVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
....|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||..
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 92 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-----DAEAKFKDLAEAWEVLKDEQRRAEYDQL 92 (329)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-----HHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 3457999999999999999999999999999999998643 5789999999999999999999999985
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.71 E-value=2.3e-18 Score=124.99 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=55.8
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcchhhHHHHHHHHHHHHHhhcCCch
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTK---TPSLLGKAKVKFQEIQEAYSVLSDER 72 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~---~~~~~~~a~~~f~~I~~AY~vLsdp~ 72 (181)
.+...|||+|||++. |+.++||+|||++++++||||++. ++..+..|.++|+.|++||++|+|+.
T Consensus 37 l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 37 LWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 345679999999996 999999999999999999999863 23344467899999999999999985
No 31
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.68 E-value=9.6e-18 Score=118.68 Aligned_cols=59 Identities=25% Similarity=0.432 Sum_probs=52.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCC
Q 030216 11 PSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSD 70 (181)
Q Consensus 11 ~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsd 70 (181)
.++|++|||++.|+.++||+|||+++++|||||+++.+. ...|.+.|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~-~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPY-EQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchh-HhHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999976432 23588899999999999964
No 32
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.5e-17 Score=112.27 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=50.4
Q ss_pred ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHH
Q 030216 10 QPSYYSVLGVSV-HSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKR 74 (181)
Q Consensus 10 ~~d~Y~iLgv~~-~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R 74 (181)
..++|+||||++ +++.++||+|||+|++++|||++ + ..+.|++|++||++|+++..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g-------~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-G-------SPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-C-------CHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-C-------CHHHHHHHHHHHHHHhhhhhc
Confidence 358999999998 79999999999999999999995 2 246899999999999987654
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.58 E-value=1.4e-16 Score=147.97 Aligned_cols=71 Identities=42% Similarity=0.665 Sum_probs=40.3
Q ss_pred cCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhccC
Q 030216 7 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGL 81 (181)
Q Consensus 7 ~~~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~l 81 (181)
.....|||+||||+++|+.++||+|||+|+++|||||++..+ .+.++|++|++||++|+||.+|+.||...
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~----~~~~~f~~i~~ay~~L~~~~~r~~yd~~~ 87 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYG 87 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC---------------------------CTHHHHHHSHHHHHHHTTC-
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHHcChHHHHHHHhhc
Confidence 445689999999999999999999999999999999986543 57889999999999999999999999854
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.20 E-value=1.1e-11 Score=104.52 Aligned_cols=70 Identities=44% Similarity=0.741 Sum_probs=57.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhcc
Q 030216 10 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDAG 80 (181)
Q Consensus 10 ~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 80 (181)
..++|.+||+...++.++|+++|+++++++|||+.+.. ..++.+.+.|+.|++||++|+||.+|..||.+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~-~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE-EEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH-HHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 45899999999999999999999999999999998542 23457899999999999999999999999974
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.96 E-value=3.3e-10 Score=74.94 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=44.9
Q ss_pred CcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCc
Q 030216 12 SYYSVLGVSVH---SSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDE 71 (181)
Q Consensus 12 d~Y~iLgv~~~---as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp 71 (181)
..|.||||++. ++.++|+++||+|....|||+. ........|++|+++|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG--------GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG--------GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT--------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC--------CCHHHHHHHHHHHHHHHHH
Confidence 46889999998 9999999999999999999996 2355678999999998543
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.97 E-value=0.15 Score=46.30 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=36.3
Q ss_pred CcccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhh
Q 030216 8 KVQPSYYSVLGVSVHSSV--EEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSV 67 (181)
Q Consensus 8 ~~~~d~Y~iLgv~~~as~--~eIk~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~v 67 (181)
...++||.+||++.+... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------------HHHHHHHHHhccc
Confidence 345669999999766655 66999999999965443 3567788888765
No 37
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=39.04 E-value=64 Score=19.65 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHH
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTL 76 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~ 76 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 14 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~~y 52 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH---------NAELSKMLGKSWKALTLAEKRPF 52 (71)
T ss_dssp HHHHHHHHHTTCTTSC---------HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhcCCHHHHHHH
Confidence 5667788888899864 36677899999999986654433
No 38
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=32.70 E-value=94 Score=19.59 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH---------NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC---------HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 4566777777888853 46678899999999997765544443
No 39
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=32.04 E-value=1.1e+02 Score=19.98 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDLP---------FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTCC---------HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4667777888899853 46778899999999987775544443
No 40
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=32.01 E-value=87 Score=19.37 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK---------VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC---------HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4667777888899864 36678899999999987 666654
No 41
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.78 E-value=74 Score=20.58 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
-+.+|..++.-||+.. ...+..+.|.+.|..|++.++....+.
T Consensus 17 ~~e~R~~ik~~~P~~~--------~~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS--------DEADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCC--------SHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc--------hhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4667888888999963 146778999999999997776555444
No 42
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=30.28 E-value=1e+02 Score=19.37 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHH
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRT 75 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~ 75 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 18 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~~ 55 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH---------NAELSKMLGKSWKALTLAEKRP 55 (83)
T ss_dssp HHHHHHHHHHHCSSSC---------HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhcCCHHHHHH
Confidence 5677888888899864 3667889999999998665443
No 43
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=29.20 E-value=29 Score=25.41 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=27.0
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCC
Q 030216 13 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDR 43 (181)
Q Consensus 13 ~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk 43 (181)
.+..|.|....+.++|+++=..+..++||+=
T Consensus 34 ~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 34 LLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 3677777888899999999999999999984
No 44
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.08 E-value=1.1e+02 Score=19.94 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS---------LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHHCCSSC---------HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566777788899863 36778899999999986665444443
No 45
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=27.54 E-value=97 Score=20.12 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 32 ~~~~r~~~k~~~P~~~---------~~eisk~lg~~Wk~ls~eeK~~Y~~ 72 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS---------ESELTRLLARMWNDLSEKKKAKYKA 72 (90)
T ss_dssp HHHTHHHHHHHCTTSC---------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4667777888899953 4677899999999998766544443
No 46
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=26.23 E-value=1.2e+02 Score=18.97 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHh
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLY 77 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y 77 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 14 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~eeK~~y~ 53 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMH---------NSEISKRLGAEWKLLSETEKRPFI 53 (80)
T ss_dssp HHHHHHHHHTTSTTSC---------HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4556777777888853 466778999999999866544433
No 47
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=24.96 E-value=1.4e+02 Score=20.11 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHh
Q 030216 28 IRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLY 77 (181)
Q Consensus 28 Ik~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y 77 (181)
-.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 40 F~~~~r~~~k~~~P~~~---------~~eisk~lg~~Wk~ls~eeK~~Y~ 80 (106)
T 4euw_A 40 WAQAARRKLADQYPHLH---------NAELSKTLGKLWRLLNESEKRPFV 80 (106)
T ss_dssp HHHHHHHHHHHHCTTSC---------HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35777888888899853 356788999999999866544433
No 48
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=24.43 E-value=1.3e+02 Score=19.27 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 28 IRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 28 Ik~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
..+.+|..++.-||+.. ..+..+.|.+.|..|++.++ ..|.
T Consensus 28 f~~~~r~~~~~~~P~~~---------~~eisk~lg~~Wk~ls~eeK-~~y~ 68 (87)
T 2e6o_A 28 FAKKYRVEYTQMYPGKD---------NRAISVILGDRWKKMKNEER-RMYT 68 (87)
T ss_dssp HHHHTHHHHHHHCTTSC---------HHHHHHHHHHHHHHSCHHHH-HHHH
T ss_pred HHHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhhCCHHHH-HHHH
Confidence 35667777888899853 45667899999999986654 4443
No 49
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=24.32 E-value=1e+02 Score=19.09 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++ ..|.
T Consensus 16 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK-~~y~ 55 (76)
T 1hry_A 16 SRDQRRKMALENPRMR---------NSEISKQLGYQWKMLTEAEK-WPFF 55 (76)
T ss_dssp HHHHHHHHHHHCSCCS---------SSHHHHHHHHHHHTCCHHHH-HHHH
T ss_pred HHHHHHHHHHHCcCCC---------HHHHHHHHHhHHHhCCHHHH-HHHH
Confidence 4567777778899864 23456889999999986554 4443
No 50
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=23.93 E-value=1.5e+02 Score=18.91 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++ ..|.
T Consensus 16 ~~~~r~~~~~~~P~~~---------~~eisk~lg~~Wk~ls~eeK-~~y~ 55 (85)
T 1j46_A 16 SRDQRRKMALENPRMR---------NSEISKQLGYQWKMLTEAEK-WPFF 55 (85)
T ss_dssp HHHHHHHHHHHSTTSC---------HHHHHHHHHHHHTTSCHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHHCCHHHH-HHHH
Confidence 4566777777899863 35667899999999986554 4443
No 51
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=23.44 E-value=1.4e+02 Score=18.50 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++ ..|.
T Consensus 14 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK-~~y~ 53 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH---------NAEISKRLGKRWKLLKDSDK-IPFI 53 (79)
T ss_dssp HHHHHHHHHTTSTTSC---------HHHHHHHHHHHHHHSCHHHH-HHHH
T ss_pred HHHHHHHHHHHCcCCC---------HHHHHHHHHHHHHhCCHHHH-HHHH
Confidence 4667777888888863 35678899999999986554 4443
No 52
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.37 E-value=1.4e+02 Score=19.77 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhhc
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYDA 79 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 79 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 29 ~~~~r~~i~~~~P~~~---------~~eisk~lg~~Wk~ls~eeK~~Y~~~ 70 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT---------FGEVSKIVASMWDGLGEEQKQVYKKK 70 (102)
T ss_dssp HHHHHHHHHHHCTTSC---------HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 4566777777899863 46677899999999986665444443
No 53
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=23.20 E-value=49 Score=22.58 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC
Q 030216 22 HSSVEEIRRAYRKLAMQWHPDRW 44 (181)
Q Consensus 22 ~as~~eIk~aYr~l~~~~HPDk~ 44 (181)
+-++.+|+.+|+.|++.+|--.-
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999886553
No 54
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=23.19 E-value=1.2e+02 Score=19.10 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHH
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTL 76 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~ 76 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 19 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~~y 57 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD---------NRGATKILADWWAVLDPKEKQKY 57 (82)
T ss_dssp HHHHHHHHHHHCSSSC---------TTHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhhCCHHHHHHH
Confidence 4667777888899854 24556889999999986654433
No 55
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.57 E-value=1.6e+02 Score=18.76 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHHhh
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 78 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 78 (181)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 14 ~~~~r~~~~~~~P~~~---------~~eisk~lg~~Wk~ls~ee-K~~y~ 53 (86)
T 2lef_A 14 MKEMRANVVAESTLKE---------SAAINQILGRRWHALSREE-QAKYY 53 (86)
T ss_dssp HHHHHHHHHHHSSCCC---------HHHHHHHHHHHHTTSCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhcCCHHH-HHHHH
Confidence 4566777777899863 3567789999999998655 44443
No 56
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=21.92 E-value=1.5e+02 Score=18.29 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHHHHHHhhcCCchHHHH
Q 030216 29 RRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTL 76 (181)
Q Consensus 29 k~aYr~l~~~~HPDk~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~ 76 (181)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 18 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~~y 56 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS---------IGDVAKKLGEMWNNTAADDKQPY 56 (77)
T ss_dssp HHHHHHHHHHHCTTCC---------HHHHHHHHHHHHHHSCGGGSHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 4566777777899853 46778999999999987664443
Done!