RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 030219
(181 letters)
>gnl|CDD|238846 cd01713, PAPS_reductase, This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly modified
version of the P loop, the fingerprint peptide of
mononucleotide-binding proteins, is present in the
active site of the protein, which appears to be a
positively charged cleft containing a number of
conserved arginine and lysine residues. Although PAPS
reductase has no ATPase activity, it shows a striking
similarity to the structure of the ATP pyrophosphatase
(ATP PPase) domain of GMP synthetase, indicating that
both enzyme families have evolved from a common
ancestral nucleotide-binding fold. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP) . It is also
found in NodP nodulation protein P from Rhizobium
meliloti which has ATP sulphurylase activity (sulphate
adenylate transferase) .
Length = 173
Score = 83.2 bits (206), Expect = 1e-20
Identities = 39/160 (24%), Positives = 55/160 (34%), Gaps = 40/160 (25%)
Query: 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTY 96
V SF+GGKDSTVLLHL K P+ I+ ++ FPE F
Sbjct: 1 NVVVSFSGGKDSTVLLHLALKALPELK------------PVPVIFLDTGYEFPETYEFVD 48
Query: 97 DTASKYVLQLDIIRSDFKS----------------------------GLEALLNAKPIRA 128
A +Y L L ++R L L + A
Sbjct: 49 RVAERYGLPLVVVRPPDSPAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVA 108
Query: 129 IFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYR 168
G+R + + G ++VNP+LDW+Y
Sbjct: 109 WITGIRRDESARRALLPVVWTDDGKGGILKVNPLLDWTYE 148
>gnl|CDD|201832 pfam01507, PAPS_reduct, Phosphoadenosine phosphosulfate reductase
family. This domain is found in phosphoadenosine
phosphosulfate (PAPS) reductase enzymes or PAPS
sulfotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP). It is also
found in NodP nodulation protein P from Rhizobium which
has ATP sulfurylase activity (sulfate adenylate
transferase).
Length = 173
Score = 55.8 bits (135), Expect = 3e-10
Identities = 35/156 (22%), Positives = 54/156 (34%), Gaps = 39/156 (25%)
Query: 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTY 96
E+ SF+GGKDS VLLHL P I+ ++ FPE F
Sbjct: 1 ELVVSFSGGKDSLVLLHLAS---------------KAFPPGPVIFIDTGYEFPETYEFVD 45
Query: 97 DTASKYVLQLDIIRSD---------FKSG------------LEALLNA---KPIRAIFLG 132
+ KY L L + + +E L A A F G
Sbjct: 46 ELEEKYGLNLKVYLPEDSFAEGINPEGIPSSLYRRCCRLRKVEPLKRALKELGFDAWFTG 105
Query: 133 VRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYR 168
+R + + + +P ++V P+L+W+
Sbjct: 106 LRRDESPSRAKLPIVSIDGDFPKVIKVFPLLNWTET 141
>gnl|CDD|223253 COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate
sulfotransferase (PAPS reductase)/FAD synthetase and
related enzymes [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 261
Score = 53.6 bits (129), Expect = 5e-09
Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 50/183 (27%)
Query: 16 KTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTF 75
K + + I +++ +S V SF+GGKDSTVLLHL
Sbjct: 21 KLEAESPIEILRWAAEEFSNP-VVVSFSGGKDSTVLLHLAA---------------KAFP 64
Query: 76 PIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFKSGLEALLNAKPI--------- 126
I+ ++ FPE TY+ + + + ++ E K
Sbjct: 65 DFPVIFLDTGYHFPE----TYEFRDRLAEEYGLDLKVYRPDDEVAEGEKYGGKLWEPSVE 120
Query: 127 ---------------------RAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDW 165
A F G+R + + + +RVNP+ DW
Sbjct: 121 RWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPTRAKLPVVSFDSEFGESIRVNPLADW 180
Query: 166 SYR 168
+
Sbjct: 181 TEL 183
>gnl|CDD|131094 TIGR02039, CysD, sulfate adenylyltransferase, small subunit.
Metabolic assimilation of sulfur from inorganic sulfate,
requires sulfate activation by coupling to a nucleoside,
for the production of high-energy nucleoside
phosphosulfates. This pathway appears to be similar in
all prokaryotic organisms. Activation is first achieved
through sulfation of sulfate with ATP by sulfate
adenylyltransferase (ATP sulfurylase) to produce
5'-phosphosulfate (APS), coupled by GTP hydrolysis.
Subsequently, APS is phosphorylated by an APS kinase to
produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In
Escherichia coli, ATP sulfurylase is a heterodimer
composed of two subunits encoded by cysD and cysN, with
APS kinase encoded by cysC. These genes are located in a
unidirectionally transcribed gene cluster, and have been
shown to be required for the synthesis of
sulfur-containing amino acids. Homologous to this E.coli
activation pathway are nodPQH gene products found among
members of the Rhizobiaceae family. These gene products
have been shown to exhibit ATP sulfurase and APS kinase
activity, yet are involved in Nod factor sulfation, and
sulfation of other macromolecules [Central intermediary
metabolism, Sulfur metabolism].
Length = 294
Score = 38.6 bits (90), Expect = 8e-04
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 18/83 (21%)
Query: 31 ALYSIEEVAFSF-------NGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFE 83
A++ I EVA F + GKDS+VLLHL R ++ G L FP+ ++ +
Sbjct: 8 AIHIIREVAAEFERPVMLYSIGKDSSVLLHLARKAFY---------PGPLPFPL--LHVD 56
Query: 84 SNSAFPEINSFTYDTASKYVLQL 106
+ F E+ +F +KY L+L
Sbjct: 57 TGWKFREMIAFRDHMVAKYGLRL 79
>gnl|CDD|237510 PRK13795, PRK13795, hypothetical protein; Provisional.
Length = 636
Score = 37.7 bits (88), Expect = 0.002
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLR 56
L+ K A+N I+ Y++ V+ SF+GGKDS V+L L R
Sbjct: 224 LEEKEKEAVNFIRGVAEKYNLP-VSVSFSGGKDSLVVLDLAR 264
>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional.
Length = 417
Score = 36.7 bits (85), Expect = 0.004
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 9 ESDDRRLKTKYNNAINVIQRTLALYSIEEVAF--SFNGGKDSTVLLHLLRAGYFLHKGEQ 66
E + R++ N++++++ + Y + A SF+GGKDS+V L +
Sbjct: 153 EKNKERIEKLEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAK---------- 202
Query: 67 SCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD 112
+ + I+ ++ +PE ++ D A KY L LD + D
Sbjct: 203 -----EVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243
>gnl|CDD|238951 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily.Adeninosine
nucleotide alpha hydrolases superfamily includes N
type ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins is predicted to bind ATP.
This domainhas a strongly conserved motif SGGKD at the
N terminus.
Length = 185
Score = 34.1 bits (79), Expect = 0.016
Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
Query: 38 VAFSFNGGKDSTVLLHLLR 56
VA S GGKDS VLLH+L+
Sbjct: 4 VALS--GGKDSLVLLHVLK 20
>gnl|CDD|223115 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning].
Length = 298
Score = 34.8 bits (80), Expect = 0.016
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 38 VAFSFNGGKDSTVLLHLL 55
VA S GGKDS LLHLL
Sbjct: 26 VAVS--GGKDSLALLHLL 41
>gnl|CDD|182626 PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional.
Length = 436
Score = 35.0 bits (81), Expect = 0.017
Identities = 15/18 (83%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Query: 38 VAFSFNGGKDSTVLLHLL 55
VAFS GG DSTVLLHLL
Sbjct: 20 VAFS--GGLDSTVLLHLL 35
>gnl|CDD|235375 PRK05253, PRK05253, sulfate adenylyltransferase subunit 2;
Provisional.
Length = 301
Score = 34.7 bits (81), Expect = 0.017
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 7/33 (21%)
Query: 31 ALYSIEEVA--FS-----FNGGKDSTVLLHLLR 56
+++ + EVA F ++ GKDS+V+LHL R
Sbjct: 16 SIHILREVAAEFENPVMLYSIGKDSSVMLHLAR 48
>gnl|CDD|238944 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases
superfamily including N type ATP PPases and ATP
sulphurylases. The domain forms a apha/beta/apha fold
which binds to Adenosine group..
Length = 103
Score = 32.1 bits (73), Expect = 0.045
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 38 VAFSFNGGKDSTVLLHLL-RAGYFLH 62
VAFS GGKDS+V LL + GY +
Sbjct: 3 VAFS--GGKDSSVAAALLKKLGYQVI 26
>gnl|CDD|238950 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a
subfamily of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases
superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which
binds to Adenosine group. This domain has a strongly
conserved motif SGGXD at the N terminus.
Length = 185
Score = 32.9 bits (76), Expect = 0.050
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 38 VAFSFNGGKDSTVLLHLLR 56
VA S GG DS LLHLL
Sbjct: 4 VAVS--GGPDSMALLHLLS 20
>gnl|CDD|226478 COG3969, COG3969, Predicted phosphoadenosine phosphosulfate
sulfotransferase [General function prediction only].
Length = 407
Score = 33.2 bits (76), Expect = 0.055
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 36 EEVAFSFNGGKDSTVLLHLL 55
V SF+GGKDS ++LHL+
Sbjct: 28 PRVCVSFSGGKDSGLMLHLV 47
>gnl|CDD|216343 pfam01171, ATP_bind_3, PP-loop family. This family of proteins
belongs to the PP-loop superfamily.
Length = 182
Score = 31.8 bits (73), Expect = 0.10
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 38 VAFSFNGGKDSTVLLHLLR 56
VA S GG DS LL+LL+
Sbjct: 4 VAVS--GGPDSMALLYLLK 20
>gnl|CDD|233864 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase,
N-terminal domain. The only examples in which the
wobble position of a tRNA must discriminate between G
and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA
(stop) vs. UGG (Trp). In all bacteria, the wobble
position of the tRNA(Ile) recognizing AUA is lysidine,
a lysine derivative of cytidine. This family describes
a protein domain found, apparently, in all bacteria in
a single copy. Eukaryotic sequences appear to be
organellar. The domain archictecture of this protein
family is variable; some, including characterized
proteins of E. coli and B. subtilis known to be
tRNA(Ile)-lysidine synthetase, include a conserved
50-residue domain that many other members lack. This
protein belongs to the ATP-binding PP-loop family (
pfam01171). It appears in the literature and protein
databases as TilS, YacA, and putative cell cycle
protein MesJ (a misnomer) [Protein synthesis, tRNA and
rRNA base modification].
Length = 189
Score = 31.1 bits (71), Expect = 0.22
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 38 VAFSFNGGKDSTVLLHLLR 56
VA S GG DS LLHLL
Sbjct: 4 VAVS--GGVDSMALLHLLL 20
>gnl|CDD|237138 PRK12563, PRK12563, sulfate adenylyltransferase subunit 2;
Provisional.
Length = 312
Score = 31.3 bits (71), Expect = 0.26
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 42 FNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASK 101
++ GKDS V+LHL + FP+ ++ ++ F E+ F A +
Sbjct: 44 YSIGKDSVVMLHLAMKAFR---------PTRPPFPL--LHVDTTWKFREMIDFRDRRAKE 92
Query: 102 YVLQL 106
L L
Sbjct: 93 LGLDL 97
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 30.1 bits (68), Expect = 0.58
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 117 LEALLNAKPIRAIFLGVRIGD-PTAV-------GQEQFSPSS-PGWPPFMRVNPILDWSY 167
LE+L N KPIR R D P G Q + GW P V I+ W++
Sbjct: 104 LESLDNGKPIRE----SRDCDIPLVARHFYHHAGWAQLLDTELAGWKPVGVVGQIVPWNF 159
Query: 168 RLL 170
LL
Sbjct: 160 PLL 162
>gnl|CDD|131720 TIGR02672, cas_csm6, CRISPR type III-A/MTUBE-associated protein
Csm6. Members of this family as found in
CRISPR-associated (cas) gene regions in Streptococcus
thermophilus CNRZ1066, Staphylococcus epidermidis RP62A,
and Mycobacterium tuberculosis (strains CDC1551 and
H37Rv), as part of Mtube-type CRISPR/Cas systems. CRISPR
is a widespread form of direct repeat found in archaea
and bacteria, with distinctive subtypes each of which
has a characteristic sporadic distribution [Mobile and
extrachromosomal element functions, Other].
Length = 362
Score = 29.5 bits (66), Expect = 1.0
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 82 FESNSAFPEINSFTYDTASK----YVLQLDIIRSDFKSGLEALLNAKPIRAIFL 131
+ F +I +FTYD A+K Y L L + + + E L++AK L
Sbjct: 171 HKVAPKFFKITAFTYDDANKKVLEYYLALA-LLAKREQWAEFLISAKSAAEFVL 223
>gnl|CDD|187830 cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain;
loosely associated with CRISPR/Cas systems.
Length = 360
Score = 29.5 bits (66), Expect = 1.0
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 82 FESNSAFPEINSFTYDTASK----YVLQLDIIRSDFKSGLEALLNAKPIRAIFL 131
+ F +I +FTYD A+K Y L L + + + E L++AK L
Sbjct: 171 HKVAPKFFKITAFTYDDANKKVLEYYLALA-LLAKREQWAEFLISAKSAAEFVL 223
>gnl|CDD|238954 cd01996, Alpha_ANH_like_III, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily.Adeninosine
nucleotide alpha hydrolases superfamily includes N
type ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins is predicted to bind ATP.
This domain has a strongly conserved motif SGGKD at
the N terminus.
Length = 154
Score = 28.4 bits (64), Expect = 1.3
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 38 VAFSFNGGKDSTVLLHLL 55
+ S GGKDS+ L+LL
Sbjct: 6 IGVS--GGKDSSYALYLL 21
>gnl|CDD|238948 cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily. Adenine
nucleotide alpha hydrolases superfamily includes N
type ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins probably binds ATP. This
domain is about 200 amino acids long with a strongly
conserved motif SGGKD at the N terminus.
Length = 202
Score = 28.4 bits (64), Expect = 1.6
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 38 VAFSFNGGKDSTVLLHLLR 56
VAFS GG DST+LL
Sbjct: 3 VAFS--GGVDSTLLLKAAV 19
>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 480
Score = 28.5 bits (64), Expect = 2.1
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 123 AKPIRAIFLGVRIGDPTAV-GQEQFSPSSPGWPPFMRVNPILDWS 166
A + A+ VR+G + +SPGW P P+L +
Sbjct: 57 AAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP---DAPLLAAA 98
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 28.4 bits (64), Expect = 2.1
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 13/49 (26%)
Query: 19 YNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQS 67
+ A+ VI +TLA+ N KD+T L+ LRA H Q
Sbjct: 433 FAEALLVIPKTLAV----------NAAKDATELVAKLRA---YHAAAQV 468
>gnl|CDD|238952 cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily.Adeninosine
nucleotide alpha hydrolases superfamily includes N
type ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins is predicted to bind ATP.
This domainhas a strongly conserved motif SGGKD at the
N terminus.
Length = 194
Score = 28.0 bits (63), Expect = 2.1
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 38 VAFSFNGGKDSTV-LLHLLRAGYF 60
V +GGKDS L L G+
Sbjct: 2 VVALISGGKDSCYALYRALEEGHE 25
>gnl|CDD|106187 PRK13225, PRK13225, phosphoglycolate phosphatase; Provisional.
Length = 273
Score = 28.1 bits (62), Expect = 2.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 104 LQLDIIRSDFKSGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSP--SSPGWPP 155
L L I+ S+ + +EA L + +R++F V+ G P + S + GW P
Sbjct: 159 LCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQP 212
>gnl|CDD|238942 cd01984, AANH_like, Adenine nucleotide alpha hydrolases
superfamily including N type ATP PPases, ATP
sulphurylases Universal Stress Response protein and
electron transfer flavoprotein (ETF). The domain forms
a apha/beta/apha fold which binds to Adenosine
nucleotide.
Length = 86
Score = 26.2 bits (58), Expect = 3.5
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 38 VAFSFNGGKDSTVLLHLL 55
VA S GG DS+VLLHL
Sbjct: 3 VALS--GGLDSSVLLHLA 18
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 27.3 bits (61), Expect = 4.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 69 SNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFKSGLEAL 120
GS P+RT + S E +T + L+ D + KSGL +L
Sbjct: 87 RGGSGYGPLRTPNRDKLSINDEAAMEVGETPREEKLREDEAKLSLKSGLASL 138
>gnl|CDD|225013 COG2102, COG2102, Predicted ATPases of PP-loop superfamily
[General function prediction only].
Length = 223
Score = 26.9 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
Query: 28 RTLALYSIEEVAFSFNGGKDSTVLLHL-LRAGYFL 61
+ +ALYS GGKDS L+L L G+ +
Sbjct: 2 KVIALYS---------GGKDSFYALYLALEEGHEV 27
>gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase;
Validated.
Length = 409
Score = 27.1 bits (61), Expect = 6.3
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 13 RRLKTKYNNAINVIQR-TLALYSIE 36
RR TK+N ++QR A+YS E
Sbjct: 285 RRQSTKFNGVSYIVQRAAEAVYSPE 309
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 27.0 bits (59), Expect = 6.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 103 VLQLDIIRSDFKSGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSP 148
+ L I+ + G LN P+RA++L G P E+ SP
Sbjct: 198 IWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSP 243
>gnl|CDD|178132 PLN02517, PLN02517, phosphatidylcholine-sterol O-acyltransferase.
Length = 642
Score = 27.0 bits (60), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 37 EVAFSFNGGKDSTVLLHLLRAGYFLH 62
E+ + NGGK V+ H + YFLH
Sbjct: 204 ELMVATNGGKKVVVVPHSMGVLYFLH 229
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 26.6 bits (58), Expect = 7.0
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 51 LLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQL-DII 109
LL GYF H GE N + + I+ + A IN YDT +++ D +
Sbjct: 50 LLLFATVGYFFHSGEG--FNARVLLAVLFIFLTTPVASHLINRAAYDTGVPLAIRIRDQL 107
Query: 110 RS 111
RS
Sbjct: 108 RS 109
>gnl|CDD|224522 COG1606, COG1606, ATP-utilizing enzymes of the PP-loop
superfamily [General function prediction only].
Length = 269
Score = 26.6 bits (59), Expect = 8.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 31 ALYSIEEVAFSFNGGKDSTVLLHLLR 56
A+ ++V +F+GG DS++L L +
Sbjct: 13 AIKEKKKVVVAFSGGVDSSLLAKLAK 38
>gnl|CDD|223676 COG0603, COG0603, Predicted PP-loop superfamily ATPase [General
function prediction only].
Length = 222
Score = 26.0 bits (58), Expect = 9.5
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 42 FNGGKDSTVLLHLLRAGYF 60
+GG DST L + +
Sbjct: 9 LSGGLDSTTCLAWAKKEGY 27
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.412
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,393,060
Number of extensions: 863161
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 49
Length of query: 181
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 90
Effective length of database: 6,901,388
Effective search space: 621124920
Effective search space used: 621124920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)