RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 030219
(181 letters)
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 53.9 bits (128), Expect = 6e-10
Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 56/197 (28%)
Query: 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLT 74
LK +I++I+ A + + ++ GKDS V+LHL R +F K
Sbjct: 8 LKQLEAESIHIIREVAAEF--DNPVMLYSIGKDSAVMLHLARKAFFPGK----------- 54
Query: 75 FPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD---------------------- 112
P ++ ++ F E+ F + L L +
Sbjct: 55 LPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMK 114
Query: 113 FKSGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSP---------------------SSP 151
+ +AL A R + + + +S +
Sbjct: 115 TEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNV 174
Query: 152 GWPPFMRVNPILDWSYR 168
+RV P+ +W+
Sbjct: 175 NKGESIRVFPLSNWTEL 191
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase
{Escherichia coli [TaxId: 562]}
Length = 215
Score = 39.7 bits (92), Expect = 6e-05
Identities = 28/158 (17%), Positives = 45/158 (28%), Gaps = 40/158 (25%)
Query: 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFT 95
E S + G + V LHL+ I I ++ FPE F
Sbjct: 45 GEYVLSSSFGIQAAVSLHLVNQIRP---------------DIPVILTDTGYLFPETYRFI 89
Query: 96 YDTASKYVLQLDIIRSDFKSGLEALLNAK------PIRAIFLGVRIGDPTAVGQEQF--- 146
+ K L L + R+ + + K + + +P ++
Sbjct: 90 DELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQ 149
Query: 147 ----------SPSSPGWPPF------MRVNPILDWSYR 168
S S P +V PI+DW R
Sbjct: 150 TWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNR 187
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 35.5 bits (80), Expect = 0.001
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 38 VAFSFNGGKDSTVLLHLLRAGYFLH 62
+A+S GG D++++L L+ Y
Sbjct: 5 LAYS--GGLDTSIILKWLKETYRAE 27
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 35.1 bits (79), Expect = 0.003
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 38 VAFSFNGGKDSTVLLHLLRAGYFLHKG 64
VAFS GG DSTVLLH L + G
Sbjct: 18 VAFS--GGLDSTVLLHQLVQWRTENPG 42
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 33.5 bits (75), Expect = 0.007
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 38 VAFSFNGGKDSTVLLHLLR 56
+A+S GG D++V+L L
Sbjct: 6 LAYS--GGLDTSVILKWLC 22
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 33.4 bits (75), Expect = 0.008
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 15/114 (13%)
Query: 38 VAFSFNGGKDSTVLLHLL-RAGYFLH------------KGEQSCSNGSLTFPIRTIYFES 84
V S GG DS V +L + G + + +Q + +
Sbjct: 9 VLLS--GGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTL 66
Query: 85 NSAFPEINSFTYDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIFLGVRIGDP 138
+ T + + ++R E + + AI G +G
Sbjct: 67 HLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQV 120
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 32.3 bits (72), Expect = 0.024
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 38 VAFSFNGGKDSTVLLHLLRA 57
+AFS GG DS VL +L
Sbjct: 29 IAFS--GGVDSVVLTDVLLK 46
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 31.5 bits (71), Expect = 0.038
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 37 EVAFSFNGGKDSTV-LLHLLRAGY 59
+VA ++GGKDS L L++G
Sbjct: 5 DVAVLYSGGKDSNYALYWALKSGL 28
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 30.0 bits (66), Expect = 0.13
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 38 VAFSFNGGKDSTVLLHLLRAGYF 60
+AFS GG D++ L +R
Sbjct: 15 IAFS--GGLDTSAALLWMRQKGA 35
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
{Erwinia carotovora [TaxId: 554]}
Length = 230
Score = 29.6 bits (65), Expect = 0.20
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 38 VAFSFNGGKDSTVLLHLLRA-GYFLH 62
V FS GG+DST L +H
Sbjct: 6 VVFS--GGQDSTTCLIQALQDYDDVH 29
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 28.6 bits (63), Expect = 0.35
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 96 YDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIF 130
T KY L I+ F L+ L + + IF
Sbjct: 36 QQTEEKYTDTLGSIQQHFMKPLQRFLKPQDMETIF 70
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase
{Pectobacterium carotovorum [TaxId: 554]}
Length = 296
Score = 28.8 bits (63), Expect = 0.36
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 12 DRRLKTKYNNAINVIQRTL------ALYSIEEVAFSFNGGKDSTVLLHLLR 56
++ L + +I R L + V +GG DS+++ L
Sbjct: 4 NQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALAS 54
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF),
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 119
Score = 25.3 bits (55), Expect = 3.2
Identities = 11/63 (17%), Positives = 18/63 (28%)
Query: 53 HLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD 112
+ G FL + ++ PE + T YVL+ D S
Sbjct: 38 ADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYSF 97
Query: 113 FKS 115
+
Sbjct: 98 IHA 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.412
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 676,807
Number of extensions: 29551
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 14
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)