BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030220
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|F Chain F, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|H Chain H, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
Length = 288
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 76/105 (72%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60
Query: 112 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 61 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|D Chain D, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 76/105 (72%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60
Query: 112 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 61 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|D Chain D, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 76/105 (72%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60
Query: 112 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 61 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|D Chain D, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 76/105 (72%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60
Query: 112 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 61 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 76/105 (72%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60
Query: 112 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 61 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 76/105 (72%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60
Query: 112 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 61 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1SCU|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|D Chain D, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
Length = 288
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 76/105 (72%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60
Query: 112 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 61 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 286
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 76/105 (72%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60
Query: 112 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 61 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 311
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 82/112 (73%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVF
Sbjct: 7 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVF 66
Query: 105 NSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 67 NTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 118
>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 311
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 82/112 (73%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVF
Sbjct: 7 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVF 66
Query: 105 NSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 67 NTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 118
>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPI|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 305
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 82/112 (73%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVF
Sbjct: 1 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVF 60
Query: 105 NSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 61 NTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 112
>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
Length = 305
Score = 133 bits (334), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 82/112 (73%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVF
Sbjct: 1 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVF 60
Query: 105 NSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 61 NTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 112
>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Methanocaldococcus Jannaschii Dsm 2661
Length = 294
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 71/102 (69%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG G+PVF++V EA
Sbjct: 8 ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVK 67
Query: 113 ETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHD 154
ET ANASVI+VP PF ++L+V ITE IP HD
Sbjct: 68 ETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHD 109
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Aeropyrum Pernix K1
Length = 297
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 75/113 (66%), Gaps = 3/113 (2%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
AV VD TRV+ QGITG+ G+FH + +EYGTK+V GVTP KGG+E G+PV++SV EA
Sbjct: 7 AVLVDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEAL 66
Query: 112 AE-TKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV--INFTR 161
AE + N S+++VP PF + LVV ITEGIP HD + +N+ R
Sbjct: 67 AEHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYAR 119
>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|D Chain D, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|F Chain F, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|H Chain H, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 296
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 70/104 (67%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ V+K TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV+++V EA A
Sbjct: 2 ILVNKETRVLVQGITGREGQFHTKQMLSYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 113 ETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
+ +AS+I+VP P + L+V ITEGIP DMV
Sbjct: 62 HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105
>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha
Subunit From Thermus Thermophilus
Length = 288
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 70/104 (67%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV+++V EA A
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 113 ETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
+ +AS+I+VP P + L+V ITEGIP DMV
Sbjct: 62 HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYG 43
MAR+ +AKLIG + PS + H R S A ++R+YG
Sbjct: 824 MARRKIAKLIGDV----PSVEGMLRHCRFSGGAT-TTNNRSYG 861
>pdb|3MMP|G Chain G, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|F Chain F, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 589
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYG 43
MAR+ +AKLIG + PS + H R S A ++R+YG
Sbjct: 130 MARRKIAKLIGDV----PSVEGMLRHCRFSGGAT-TTNNRSYG 167
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 61 VICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGG--TEHLGLPVFNSVAE 109
V+ +G+ G +G F ++Q + +G +GGV P E LGL VA+
Sbjct: 244 VVSEGVKGDDGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEGLGLKYHWGVAD 296
>pdb|2X8T|A Chain A, Crystal Structure Of The Abn2 H318a Mutant
pdb|2X8T|B Chain B, Crystal Structure Of The Abn2 H318a Mutant
Length = 471
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 66 ITGKNGTFHTEQAIE-YGTKMVGGVT 90
+ GK GTF +++IE YG K++G T
Sbjct: 277 VRGKGGTFFDDRSIEPYGVKLMGSYT 302
>pdb|2X8S|A Chain A, Crystal Structure Of The Abn2 D171a Mutant In Complex With
Arabinotriose
pdb|2X8S|B Chain B, Crystal Structure Of The Abn2 D171a Mutant In Complex With
Arabinotriose
Length = 470
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 66 ITGKNGTFHTEQAIE-YGTKMVGGVT 90
+ GK GTF +++IE YG K++G T
Sbjct: 277 VRGKGGTFFDDRSIEPYGVKLMGSYT 302
>pdb|2X8F|A Chain A, Native Structure Of Endo-1,5-Alpha-L-Arabinanases From
Bacillus Subtilis
pdb|2X8F|B Chain B, Native Structure Of Endo-1,5-Alpha-L-Arabinanases From
Bacillus Subtilis
Length = 470
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 66 ITGKNGTFHTEQAIE-YGTKMVGGVT 90
+ GK GTF +++IE YG K++G T
Sbjct: 277 VRGKGGTFFDDRSIEPYGVKLMGSYT 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,646,418
Number of Sequences: 62578
Number of extensions: 164803
Number of successful extensions: 372
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 26
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)