BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030220
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1
Length = 347
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/160 (73%), Positives = 130/160 (81%), Gaps = 9/160 (5%)
Query: 1 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVD 56
M+RQ +A+LIGS+ S RR ST S + S SR++ A+ HP AVFVD
Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSF---ASDPHPPAAVFVD 55
Query: 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA 116
KNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNSVAEAKA+TKA
Sbjct: 56 KNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKA 115
Query: 117 NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
NASVIYVP PFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 116 NASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155
>sp|Q8GTQ9|SUCA1_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Solanum lycopersicum GN=SCOA PE=1 SV=1
Length = 332
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/156 (73%), Positives = 123/156 (78%), Gaps = 14/156 (8%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
MARQA KLI ++ + +SS H R S A+ PAVFVDKNTR
Sbjct: 1 MARQA-TKLIANLSKK---LSSSNPHTRCSEQTV----------WIGAAPPAVFVDKNTR 46
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASV 120
VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN+V EAKAETKANASV
Sbjct: 47 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVEEAKAETKANASV 106
Query: 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
IYVPPPFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 107 IYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMV 142
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2
Length = 341
Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/156 (70%), Positives = 124/156 (79%), Gaps = 6/156 (3%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
M+RQ + +L+GS+ + S L+S SR++G++ AVFVDKNTR
Sbjct: 1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTS----LVQSRSFGTTPPPPA-AVFVDKNTR 54
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASV 120
VICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFN+VAEAKAETKANASV
Sbjct: 55 VICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANASV 114
Query: 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
IYVP PFAAAAIME + AELDL+VCITEGIPQHDMV
Sbjct: 115 IYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMV 150
>sp|Q6DQL1|SUCA2_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Solanum lycopersicum PE=1 SV=1
Length = 337
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/157 (75%), Positives = 128/157 (81%), Gaps = 11/157 (7%)
Query: 1 MARQALAKLIGSIGSR-RPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNT 59
MARQA +LI ++ ++ PS+ + SA+P H Y S PAVFVDKNT
Sbjct: 1 MARQA-TRLISNLSTKLNPSSPTM--------SASPLWHQYRYFGSPPPP-PAVFVDKNT 50
Query: 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS 119
RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN+VAEAK ETKANAS
Sbjct: 51 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKVETKANAS 110
Query: 120 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
V+YVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV
Sbjct: 111 VVYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 147
>sp|Q6ZL94|SUCA_ORYSJ Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Oryza sativa subsp. japonica
GN=Os07g0577700 PE=1 SV=1
Length = 331
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/129 (86%), Positives = 120/129 (93%), Gaps = 1/129 (0%)
Query: 29 LSSSAAPAAHSRNYGSSAAAS-HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVG 87
L S+A+ H+R + ++AAA+ PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVG
Sbjct: 12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVG 71
Query: 88 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147
GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT
Sbjct: 72 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 131
Query: 148 EGIPQHDMV 156
EGIPQHDMV
Sbjct: 132 EGIPQHDMV 140
>sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Mus musculus GN=Suclg1 PE=1 SV=4
Length = 346
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVF
Sbjct: 42 SYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVF 101
Query: 105 NSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 102 NTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMV 153
>sp|P36967|SUCA_DICDI Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Dictyostelium discoideum GN=scsA PE=1 SV=3
Length = 315
Score = 172 bits (437), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 98/118 (83%)
Query: 39 SRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH 98
+RN+G ++ P+V ++K+T+VICQG TG GTFH++QAIEYGT MVGGV+P KGG +H
Sbjct: 8 ARNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKH 67
Query: 99 LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
L LPVFN+V EAK T ANA+VIYVPPP AAAAI EA++AE++LVVCITEGIPQ DMV
Sbjct: 68 LDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMV 125
>sp|Q9YGD2|SUCA_COLLI Succinyl-CoA ligase subunit alpha, mitochondrial (Fragment)
OS=Columba livia GN=SUCLG1 PE=1 SV=1
Length = 306
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 95/112 (84%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S +AS +++ KNT+VICQG TGK GTFH++QA++YGT +VGG++P KGG HLGLPVF
Sbjct: 2 SYSASRKNLYISKNTKVICQGFTGKQGTFHSQQALDYGTNLVGGISPGKGGKTHLGLPVF 61
Query: 105 NSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
NSV EAK +T A+A+VIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 62 NSVKEAKEQTGASATVIYVPPPFAAAAINEAIDAEMPLVVCITEGIPQQDMV 113
>sp|Q1RH56|SUCD_RICBR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
bellii (strain RML369-C) GN=sucD PE=3 SV=1
Length = 291
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 89/105 (84%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ V+K T+VICQG TG GTFH+EQAI YGTKMVGGVTP KGG HL LP++N+V EAK
Sbjct: 2 AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A+T ANASVIYVPPPFAA +I+EA++A +++VVCITEGIP DMV
Sbjct: 62 AKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMV 106
>sp|Q4ULQ8|SUCD_RICFE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=sucD PE=3 SV=1
Length = 292
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 88/105 (83%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ ++K T+VICQG TG GTFH+EQAI YGT MVGGVTP KGG HL LPV+N+V EAK
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A+T ANASVIYVPP FAA +I+EA++AE+++VVCITEGIP DMV
Sbjct: 62 AKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMV 106
>sp|Q9AKE1|SUCD_RICTY Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=sucD PE=3 SV=1
Length = 292
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 88/105 (83%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ ++K T+VICQG TG GTFH+EQAI YGT MVGGVTP KGG HL LPV+N+V EAK
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A+T ANASVIYVPP FAA +I+EA++A++++VVCITEGIP DMV
Sbjct: 62 AKTDANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMV 106
>sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Homo sapiens GN=SUCLG1 PE=1 SV=4
Length = 346
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 94/112 (83%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS ++VDKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG HLGLPVF
Sbjct: 42 SYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVF 101
Query: 105 NSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPFAAAAI EA+EAE+ LVVCITEGIPQ DMV
Sbjct: 102 NTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMV 153
>sp|P13086|SUCA_RAT Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2
Length = 346
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 95/112 (84%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVF
Sbjct: 42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVF 101
Query: 105 NSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 102 NTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMV 153
>sp|Q92I22|SUCD_RICCN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=sucD PE=3
SV=1
Length = 292
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 88/105 (83%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ ++K T+VICQG TG GTFH+EQAI YGT MVGGVTP KGG HL LPV+N+V EAK
Sbjct: 2 AILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A+T ANASVIYVPP FAA +I+EA++AE+++VVCITEGIP DMV
Sbjct: 62 AKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMV 106
>sp|O08371|SUCD_RICPR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
prowazekii (strain Madrid E) GN=sucD PE=3 SV=1
Length = 292
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 88/105 (83%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ ++K T+VICQG TG GTFH+EQAI YGT MVGGVTP KGG HL LPV+N+V EAK
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A+T ANASVIYVPP FAA +I+EA++A++++VVCITEGIP DM+
Sbjct: 62 AKTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMI 106
>sp|O19069|SUCA_PIG Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Sus scrofa GN=SUCLG1 PE=1 SV=2
Length = 346
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 93/112 (83%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVF
Sbjct: 42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVF 101
Query: 105 NSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 102 NTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 153
>sp|Q58DR8|SUCA_BOVIN Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Bos taurus GN=SUCLG1 PE=2 SV=3
Length = 346
Score = 153 bits (387), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 102/138 (73%)
Query: 19 STASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQA 78
S +S ++ RL S A + S S ++VD+NT++ICQG TGK GTFH++QA
Sbjct: 16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQA 75
Query: 79 IEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138
+EYGTK+VGG TP KGG HLGLPVFN+V EAK +T A ASVIYVPPPFA AAI EA+EA
Sbjct: 76 LEYGTKLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEA 135
Query: 139 ELDLVVCITEGIPQHDMV 156
E+ LVVCITEGIPQ DMV
Sbjct: 136 EVSLVVCITEGIPQQDMV 153
>sp|P53591|SUCD_COXBU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=sucD
PE=3 SV=2
Length = 294
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 86/105 (81%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DK TRV+CQG TGK GTFH+EQAIEYGT+MVGGVTP KGG HLGLP+FNSV EA
Sbjct: 2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMVGGVTPGKGGQSHLGLPIFNSVHEAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET A+A++I+VP PF +I+EA++A + LVVCITEGIP DM+
Sbjct: 62 EETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDML 106
>sp|P0AGE9|SUCD_ECOLI Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
(strain K12) GN=sucD PE=1 SV=2
Length = 289
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 84/105 (80%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF +I+EA++A + L++ ITEGIP DM+
Sbjct: 62 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 106
>sp|P0AGF0|SUCD_ECOL6 Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=sucD PE=3
SV=2
Length = 289
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 84/105 (80%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF +I+EA++A + L++ ITEGIP DM+
Sbjct: 62 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 106
>sp|P0AGF1|SUCD_ECO57 Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
O157:H7 GN=sucD PE=3 SV=2
Length = 289
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 84/105 (80%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF +I+EA++A + L++ ITEGIP DM+
Sbjct: 62 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 106
>sp|P80865|SUCD_BACSU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus
subtilis (strain 168) GN=sucD PE=1 SV=3
Length = 300
Score = 150 bits (378), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 86/105 (81%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+VF++K+TRVI QGITG FHT+Q +EYGT +VGGVTP KGGTE G+PVFN+VAEA
Sbjct: 2 SVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGGTEAEGVPVFNTVAEAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
T ANASVIYVP PFAA AIMEA++AELDLV+CITE IP DMV
Sbjct: 62 QTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMV 106
>sp|Q51567|SUCD_PSEAE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=sucD PE=3 SV=2
Length = 295
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 86/120 (71%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+V ++K+T+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 2 SVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVKEAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLN 171
T A ASVIYVP PF +I+EA + L+VCITEGIP DM+ + + L V +
Sbjct: 62 EATGAEASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCDELGVRLIG 121
>sp|P45102|SUCD_HAEIN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=sucD PE=3 SV=1
Length = 293
Score = 146 bits (368), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 85/112 (75%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ +DKNT+VICQG TG GTFH+EQA+ YGT++VGGV+P KGGT HLGLPVFN+V EA
Sbjct: 2 AILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKGGTTHLGLPVFNTVREAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 163
T A+VIYVP F AI+EA++A + L+VCITEGIP DM+ ++N
Sbjct: 62 ENTGVTATVIYVPASFCKDAIIEAIDAGIQLIVCITEGIPTLDMLKVKQKLN 113
>sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [ADP/GDP-forming] subunit alpha,
mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=3
SV=1
Length = 322
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 83/102 (81%)
Query: 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET 114
++K+T+VI QG TGK GTFH +Q +EY TK+VGGV K GTEHLGLPVF +V+EA+ +T
Sbjct: 30 INKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFKNVSEARNKT 89
Query: 115 KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A+ASVIYVP A +AI EAM+AE+ LVVCITEGIPQHDMV
Sbjct: 90 GADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMV 131
>sp|Q94522|SUCA_DROME Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3
Length = 328
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/102 (72%), Positives = 92/102 (90%)
Query: 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET 114
++ ++RVICQG TGK GTFH++QA+EYGTK+VGG++PKKGGT+HLGLPVF SVAEAK T
Sbjct: 34 LNGDSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFASVAEAKKAT 93
Query: 115 KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
+A+VIYVPPP AAAAI+EA+EAE+ L+VCITEG+PQHDMV
Sbjct: 94 DPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMV 135
>sp|O28098|SUCD2_ARCFU Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=sucD2 PE=3 SV=1
Length = 287
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 85/112 (75%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ VD+ T+V+ QGITG G FHTE+ + YGTK+V GVTP KGGTE LG+PV++SV EA
Sbjct: 2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 163
E ANASVI+VP PFAA A+MEA +A + ++VCITEGIP HD + + RV
Sbjct: 62 READANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVK 113
>sp|Q9P727|SUCA_NEUCR Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=8D4.130 PE=3 SV=1
Length = 333
Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 1/129 (0%)
Query: 28 RLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVG 87
+L + A+S N S AA+ + ++ +T+V+ QG TGK GTFH +QAIEYGT +VG
Sbjct: 13 KLVQQLSKRAYSSNS-SPYAATINNLKINGDTKVLFQGFTGKQGTFHAQQAIEYGTNVVG 71
Query: 88 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147
G PKK G HL PVF++V+EA ET A A+ I+VPPP AAA I EA++AE+ L VCIT
Sbjct: 72 GTNPKKAGQTHLDRPVFSNVSEAVKETGATATAIFVPPPLAAAGIEEALQAEIPLAVCIT 131
Query: 148 EGIPQHDMV 156
EGIPQHDMV
Sbjct: 132 EGIPQHDMV 140
>sp|P99070|SUCD_STAAN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain N315) GN=sucD PE=1 SV=1
Length = 302
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 82/105 (78%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFN+V EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|P66866|SUCD_STAAM Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=sucD PE=1 SV=1
Length = 302
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 82/105 (78%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFN+V EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|Q5HGI6|SUCD_STAAC Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain COL) GN=sucD PE=3 SV=1
Length = 302
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 82/105 (78%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFN+V EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|O67547|SUCD_AQUAE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus
(strain VF5) GN=sucD PE=3 SV=1
Length = 305
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 85/106 (80%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ V+K+T+V+ QGITGK G+FH +Q EYGT++V GVTP KGG E G+PVFN+V EA
Sbjct: 2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVI 157
ET AN S+I+VP PFAA AI+EA++A ++LVVCITEGIP DM++
Sbjct: 62 KETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMM 107
>sp|Q8NX01|SUCD_STAAW Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MW2) GN=sucD PE=3 SV=1
Length = 302
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 82/105 (78%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFN+V EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|Q6G9W7|SUCD_STAAS Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MSSA476) GN=sucD PE=3 SV=1
Length = 302
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 82/105 (78%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFN+V EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|Q6GHI9|SUCD_STAAR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MRSA252) GN=sucD PE=3 SV=1
Length = 302
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 82/105 (78%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFN+V EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|Q8CPH4|SUCD_STAES Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1
Length = 302
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 83/105 (79%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+N+V EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET AN SV+YVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 62 NETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMV 106
>sp|Q5HPU4|SUCD_STAEQ Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3
SV=1
Length = 302
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 83/105 (79%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+N+V EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET AN SV+YVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 62 NETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMV 106
>sp|P53598|SUCA_YEAST Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=LSC1 PE=1 SV=1
Length = 329
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 77/104 (74%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ + K+T+VI QG TGK GTFH + EYGT +VGG PKK G HLG PVF SV +A
Sbjct: 31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIK 90
Query: 113 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET A AS I+VPPP AAAAI E++EAE+ L VCITEGIPQHDM+
Sbjct: 91 ETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDML 134
>sp|O28733|SUCD1_ARCFU Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=sucD1 PE=3 SV=1
Length = 291
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 82/106 (77%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ VD+NTRVI QGITG G+F ++ ++YGTK+VGGVTP KGG+E G+PV+N+V EA
Sbjct: 5 AILVDENTRVIVQGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGSEVHGIPVYNTVEEAV 64
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVI 157
AET A+ S+IYVP FA AI EA +A L LVVC+TEGIP +D ++
Sbjct: 65 AETNADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEML 110
>sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC16E8.17c PE=3 SV=1
Length = 331
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 92/132 (69%), Gaps = 4/132 (3%)
Query: 25 SHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTK 84
S R SSS+ +N S + P + ++ +T+VI QG TGK GTFH + A++YGTK
Sbjct: 11 SLRRFSSSS----QLKNSKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTK 66
Query: 85 MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVV 144
+VGG PKK GT HLG PVF ++ EA ETKA+AS ++VPPP AA AI EA+ AE+ L+V
Sbjct: 67 VVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIV 126
Query: 145 CITEGIPQHDMV 156
ITEGIPQHDM+
Sbjct: 127 AITEGIPQHDML 138
>sp|Q58643|SUCD_METJA Succinyl-CoA ligase [ADP-forming] subunit alpha
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=sucD PE=1
SV=1
Length = 294
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 79/102 (77%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG G+PVF++V EA
Sbjct: 8 ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVK 67
Query: 113 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD 154
ET ANASVI+VP PFA A+ EA++A ++L+V ITE IP HD
Sbjct: 68 ETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHD 109
>sp|P53595|MTKB_METEA Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens
(strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2
Length = 296
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 74/105 (70%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +D+ T ++ QGITG GTFH ++ I YG+ +VGGVTP KGG H G+PVFN+V EA
Sbjct: 2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
T A S+ +V PPFAA AIMEA +A L LV IT+GIP DM+
Sbjct: 62 EATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMM 106
>sp|O26663|SUCD_METTH Succinyl-CoA ligase [ADP-forming] subunit alpha
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=sucD PE=3 SV=1
Length = 293
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+NSV E
Sbjct: 7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTE 66
Query: 113 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD 154
E NAS+I+VP PFA A E+++ LDLVV ITE IP HD
Sbjct: 67 EMDVNASIIFVPAPFAKDAAFESIK-HLDLVVIITEHIPVHD 107
>sp|P09143|SUCD_THETH Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus
thermophilus GN=sucD PE=1 SV=1
Length = 288
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 79/104 (75%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ V++ TRV+ QGITG+ G FHT+Q ++YGTK+V GVTP KGGTE LG+PV+++V EA A
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLDYGTKIVAGVTPGKGGTEVLGVPVYDTVKEAVA 61
Query: 113 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
+ +AS+I+VP P AA A +EA A + L+V ITEGIP DMV
Sbjct: 62 HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105
>sp|P71558|SUCD_MYCTU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium
tuberculosis GN=sucD PE=3 SV=1
Length = 303
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 77/115 (66%), Gaps = 9/115 (7%)
Query: 49 SHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----EHLG---- 100
+H ++F+ ++ +VI QGITG T HT + + GT++VGGV +K GT E G
Sbjct: 2 THMSIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLI 61
Query: 101 -LPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD 154
LPVF SVAEA +T A+ S+I+VPP FA AI+EA++AE+ L+V ITEGIP D
Sbjct: 62 KLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQD 116
>sp|Q7U0Z0|SUCD_MYCBO Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=sucD PE=3
SV=1
Length = 303
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 77/115 (66%), Gaps = 9/115 (7%)
Query: 49 SHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----EHLG---- 100
+H ++F+ ++ +VI QGITG T HT + + GT++VGGV +K GT E G
Sbjct: 2 THMSIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLI 61
Query: 101 -LPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD 154
LPVF SVAEA +T A+ S+I+VPP FA AI+EA++AE+ L+V ITEGIP D
Sbjct: 62 KLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQD 116
>sp|P53399|SUCA1_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS1 PE=3 SV=1
Length = 309
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Query: 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEA 110
P +F+DK+T+V+ QGI G G FH+ +YGTK+VG V PKK GT GLP+F ++ E
Sbjct: 13 PLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGTIIAGLPIFKNMKEV 71
Query: 111 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
T ANAS+I+VP P AAAA +EA EA + LVVCITE IPQHDM+
Sbjct: 72 VKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMI 117
>sp|P53400|SUCA2_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1
Length = 309
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Query: 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAE 109
P +F+DK+TRV+ QGI G G +H+ EYGTK+VG V PKK G GLP+F ++ E
Sbjct: 12 QPLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTKVVGAVHPKKAGKIIAGLPIFKNMKE 70
Query: 110 AKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
T ANAS+I+VP P AAAA +EA EA + LVVCITE IPQHDM+
Sbjct: 71 VVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMI 117
>sp|P53401|SUCA3_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1
Length = 309
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAE 109
P +F+DK+T+V+ QGI G G FH+ +YGTK+VG V PKK G+ GLP+F ++ E
Sbjct: 12 QPLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGSIIAGLPIFKNMKE 70
Query: 110 AKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
T ANAS+I+VP P AAAA +EA +A + LVVCITE IPQHDM+
Sbjct: 71 VVKRTDANASLIFVPAPGAAAACIEAAQAGMGLVVCITEHIPQHDMI 117
>sp|Q049X1|APT_LACDB Adenine phosphoribosyltransferase OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC BAA-365) GN=apt PE=3 SV=1
Length = 175
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 10 IGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGK 69
IG + +R+P ++L AA+ YGS+ H VIC +
Sbjct: 74 IGFVPARKP--------HKLPREVEAAAYDLEYGSNVLEMHKDAIKPGQRVVICDDLMAT 125
Query: 70 NGTFH-TEQAIE-YGTKMVGG-----VTPKKGGTEHLGLPVFNSV 107
GT H T++ IE G K+VG +T KG + + +F+ V
Sbjct: 126 AGTMHATKELIERLGGKVVGAAFYIELTDLKGREKFPDVDIFSLV 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,317,591
Number of Sequences: 539616
Number of extensions: 2387223
Number of successful extensions: 7009
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6948
Number of HSP's gapped (non-prelim): 70
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)