Query 030220
Match_columns 181
No_of_seqs 148 out of 1125
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 10:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00187 succinyl-CoA syntheta 100.0 8.2E-29 1.8E-33 218.6 13.1 118 46-163 17-136 (317)
2 KOG1255 Succinyl-CoA synthetas 100.0 4E-29 8.6E-34 214.3 10.3 130 33-162 13-142 (329)
3 COG0074 SucD Succinyl-CoA synt 99.9 7E-27 1.5E-31 203.0 12.2 116 51-166 1-116 (293)
4 PLN00125 Succinyl-CoA ligase [ 99.9 3E-23 6.5E-28 182.1 12.8 118 48-165 2-120 (300)
5 TIGR01019 sucCoAalpha succinyl 99.9 9.2E-22 2E-26 171.6 12.5 115 53-167 1-115 (286)
6 PF01113 DapB_N: Dihydrodipico 99.9 8.4E-22 1.8E-26 151.5 7.4 111 59-172 1-124 (124)
7 PRK05678 succinyl-CoA syntheta 99.8 2E-20 4.3E-25 163.6 13.1 117 51-167 1-117 (291)
8 PF02629 CoA_binding: CoA bind 99.8 2.3E-20 5.1E-25 137.5 10.2 93 56-149 1-96 (96)
9 COG0289 DapB Dihydrodipicolina 99.8 4.7E-19 1E-23 153.2 10.4 112 58-172 2-126 (266)
10 COG2344 AT-rich DNA-binding pr 99.8 9.7E-19 2.1E-23 145.4 5.9 109 52-161 78-199 (211)
11 PLN02775 Probable dihydrodipic 99.7 1.2E-17 2.7E-22 145.9 10.6 113 58-172 11-136 (286)
12 TIGR00036 dapB dihydrodipicoli 99.7 6.5E-17 1.4E-21 138.9 11.0 111 59-172 2-127 (266)
13 TIGR02130 dapB_plant dihydrodi 99.7 9.6E-17 2.1E-21 139.7 10.0 110 60-172 2-125 (275)
14 PRK00048 dihydrodipicolinate r 99.7 4E-16 8.7E-21 133.1 11.0 108 59-169 2-113 (257)
15 TIGR02717 AcCoA-syn-alpha acet 99.6 3E-15 6.6E-20 136.9 11.1 109 53-166 3-121 (447)
16 COG1832 Predicted CoA-binding 99.5 6.4E-14 1.4E-18 111.1 9.7 107 54-164 12-121 (140)
17 PF13380 CoA_binding_2: CoA bi 99.5 5.6E-14 1.2E-18 107.3 9.1 99 59-166 1-102 (116)
18 PLN02522 ATP citrate (pro-S)-l 99.5 1.8E-13 3.8E-18 130.1 12.0 110 53-166 5-130 (608)
19 PF01408 GFO_IDH_MocA: Oxidore 99.2 2.9E-11 6.4E-16 89.7 6.5 107 59-166 1-113 (120)
20 PRK05472 redox-sensing transcr 99.1 2.2E-10 4.8E-15 95.0 7.1 94 53-147 79-178 (213)
21 PRK13303 L-aspartate dehydroge 99.1 5.3E-10 1.1E-14 96.0 8.4 106 58-167 1-114 (265)
22 COG1042 Acyl-CoA synthetase (N 99.0 2.1E-09 4.5E-14 102.4 8.4 97 53-155 6-106 (598)
23 PRK13304 L-aspartate dehydroge 98.9 3.4E-09 7.5E-14 90.9 7.9 104 59-166 2-113 (265)
24 PRK11579 putative oxidoreducta 98.9 7.4E-09 1.6E-13 90.9 9.8 109 57-166 3-115 (346)
25 COG0673 MviM Predicted dehydro 98.7 2.9E-08 6.4E-13 85.3 7.0 109 57-165 2-117 (342)
26 PRK13302 putative L-aspartate 98.7 5.8E-08 1.2E-12 83.9 8.3 103 58-165 6-115 (271)
27 PRK10206 putative oxidoreducta 98.7 1E-07 2.2E-12 84.4 9.4 107 59-166 2-115 (344)
28 TIGR01921 DAP-DH diaminopimela 98.6 8.6E-08 1.9E-12 85.5 7.7 104 58-164 3-110 (324)
29 PRK04207 glyceraldehyde-3-phos 98.6 1.6E-07 3.4E-12 83.7 7.2 85 58-145 1-108 (341)
30 PRK06270 homoserine dehydrogen 98.5 5.3E-07 1.1E-11 80.2 7.7 109 58-168 2-146 (341)
31 TIGR01761 thiaz-red thiazoliny 98.4 7.1E-07 1.5E-11 80.0 7.2 104 57-166 2-115 (343)
32 PRK08374 homoserine dehydrogen 98.3 1.5E-06 3.3E-11 77.3 7.4 105 58-164 2-139 (336)
33 PF07991 IlvN: Acetohydroxy ac 98.3 9.1E-07 2E-11 72.4 4.1 93 57-153 3-100 (165)
34 PLN02819 lysine-ketoglutarate 98.3 5.7E-06 1.2E-10 83.4 10.5 112 56-171 567-701 (1042)
35 PF01118 Semialdhyde_dh: Semia 98.2 2.7E-06 5.8E-11 64.6 5.8 91 60-154 1-104 (121)
36 PRK06349 homoserine dehydrogen 98.2 4.4E-06 9.6E-11 76.4 8.1 108 58-167 3-124 (426)
37 PRK11880 pyrroline-5-carboxyla 98.2 5.7E-06 1.2E-10 69.8 8.0 99 58-159 2-106 (267)
38 PRK07634 pyrroline-5-carboxyla 98.2 1.1E-05 2.3E-10 67.1 9.1 99 57-159 3-111 (245)
39 PF03447 NAD_binding_3: Homose 98.2 6.2E-07 1.3E-11 67.3 1.4 100 65-167 1-112 (117)
40 TIGR00465 ilvC ketol-acid redu 98.2 5.3E-06 1.1E-10 73.5 7.0 97 58-158 3-104 (314)
41 PRK12491 pyrroline-5-carboxyla 98.2 5.3E-06 1.1E-10 71.7 6.8 99 59-160 3-110 (272)
42 PF03807 F420_oxidored: NADP o 98.1 2.8E-06 6E-11 61.0 4.3 86 60-148 1-95 (96)
43 PRK00436 argC N-acetyl-gamma-g 98.1 4.8E-06 1E-10 74.1 6.6 95 58-154 2-106 (343)
44 PRK05479 ketol-acid reductoiso 98.1 9.9E-06 2.2E-10 72.5 8.2 95 58-156 17-116 (330)
45 PRK06091 membrane protein FdrA 98.1 9.6E-06 2.1E-10 77.0 8.5 67 100-167 101-168 (555)
46 PF03446 NAD_binding_2: NAD bi 98.1 2.7E-06 5.8E-11 67.6 4.0 105 58-166 1-112 (163)
47 PLN02688 pyrroline-5-carboxyla 98.1 1.1E-05 2.5E-10 67.9 8.0 99 59-160 1-108 (266)
48 PRK06928 pyrroline-5-carboxyla 98.1 1.5E-05 3.3E-10 68.6 8.8 97 59-160 2-111 (277)
49 PRK13403 ketol-acid reductoiso 98.1 7.2E-06 1.6E-10 73.6 6.9 94 58-155 16-113 (335)
50 PTZ00431 pyrroline carboxylate 98.1 2.8E-05 6.1E-10 66.3 10.1 97 58-160 3-103 (260)
51 PRK08300 acetaldehyde dehydrog 98.1 6.5E-06 1.4E-10 72.9 5.9 87 58-145 4-100 (302)
52 PRK07680 late competence prote 98.1 1.9E-05 4.1E-10 67.4 8.5 98 60-160 2-109 (273)
53 PRK13301 putative L-aspartate 98.1 1.8E-05 3.9E-10 69.2 8.2 105 58-164 2-112 (267)
54 TIGR03215 ac_ald_DH_ac acetald 98.0 1.2E-05 2.6E-10 70.6 7.0 86 59-145 2-94 (285)
55 COG0059 IlvC Ketol-acid reduct 98.0 1.2E-05 2.6E-10 71.8 6.5 93 58-154 18-115 (338)
56 PRK07679 pyrroline-5-carboxyla 98.0 4E-05 8.6E-10 65.7 9.3 97 59-159 4-111 (279)
57 PRK06476 pyrroline-5-carboxyla 98.0 2E-05 4.3E-10 66.6 6.9 99 60-161 2-107 (258)
58 COG0345 ProC Pyrroline-5-carbo 97.9 5.2E-05 1.1E-09 66.2 7.6 100 58-160 1-108 (266)
59 COG1712 Predicted dinucleotide 97.9 6.9E-05 1.5E-09 64.7 8.1 103 60-165 2-111 (255)
60 TIGR03570 NeuD_NnaD sugar O-ac 97.8 0.00012 2.6E-09 58.0 8.6 83 60-143 1-87 (201)
61 PF13460 NAD_binding_10: NADH( 97.8 6.9E-05 1.5E-09 58.7 7.1 85 61-147 1-97 (183)
62 PRK12490 6-phosphogluconate de 97.8 5.7E-05 1.2E-09 65.5 7.1 105 60-167 2-113 (299)
63 TIGR03855 NAD_NadX aspartate d 97.8 6.7E-05 1.5E-09 63.9 7.2 82 82-165 1-88 (229)
64 KOG2741 Dimeric dihydrodiol de 97.8 8.4E-05 1.8E-09 67.1 8.1 110 57-167 5-124 (351)
65 PRK09599 6-phosphogluconate de 97.8 8.6E-05 1.9E-09 64.4 7.5 107 59-168 1-114 (301)
66 PRK14618 NAD(P)H-dependent gly 97.8 5.8E-05 1.3E-09 65.9 6.4 99 58-162 4-121 (328)
67 TIGR01850 argC N-acetyl-gamma- 97.8 7.2E-05 1.6E-09 66.8 6.9 94 59-155 1-107 (346)
68 PF10727 Rossmann-like: Rossma 97.7 6.8E-05 1.5E-09 58.6 5.9 95 56-154 8-110 (127)
69 PRK14619 NAD(P)H-dependent gly 97.7 0.00014 3E-09 63.3 8.2 85 58-156 4-91 (308)
70 PRK11559 garR tartronate semia 97.7 0.00016 3.5E-09 61.9 8.2 103 59-166 3-114 (296)
71 TIGR00872 gnd_rel 6-phosphoglu 97.7 0.00017 3.8E-09 62.6 7.8 101 60-163 2-108 (298)
72 PLN02968 Probable N-acetyl-gam 97.7 0.00013 2.8E-09 66.4 7.2 95 57-155 37-142 (381)
73 PRK00094 gpsA NAD(P)H-dependen 97.6 5.7E-05 1.2E-09 64.9 4.5 101 58-162 1-120 (325)
74 PF05368 NmrA: NmrA-like famil 97.6 0.00017 3.7E-09 59.1 7.0 83 61-145 1-100 (233)
75 PRK08664 aspartate-semialdehyd 97.6 0.00011 2.5E-09 65.3 6.4 90 58-151 3-111 (349)
76 PLN02256 arogenate dehydrogena 97.6 0.0001 2.3E-09 64.8 5.7 76 57-135 35-112 (304)
77 PRK06392 homoserine dehydrogen 97.5 0.00024 5.2E-09 63.4 6.9 105 59-166 1-135 (326)
78 TIGR01505 tartro_sem_red 2-hyd 97.5 0.00049 1.1E-08 59.0 8.5 101 60-165 1-110 (291)
79 PRK15059 tartronate semialdehy 97.5 0.00027 5.9E-09 61.5 7.0 102 60-167 2-112 (292)
80 TIGR01692 HIBADH 3-hydroxyisob 97.5 0.00028 6.1E-09 60.7 6.8 102 63-168 1-110 (288)
81 TIGR00978 asd_EA aspartate-sem 97.5 0.00021 4.5E-09 63.5 6.1 89 59-150 1-107 (341)
82 TIGR01915 npdG NADPH-dependent 97.5 0.00093 2E-08 55.4 9.6 90 59-152 1-106 (219)
83 PRK05225 ketol-acid reductoiso 97.5 0.00017 3.8E-09 67.5 5.6 92 58-154 36-137 (487)
84 PRK07417 arogenate dehydrogena 97.5 0.00044 9.6E-09 59.3 7.5 99 59-161 1-104 (279)
85 COG0002 ArgC Acetylglutamate s 97.5 0.00042 9.2E-09 62.6 7.5 102 58-161 2-115 (349)
86 COG0240 GpsA Glycerol-3-phosph 97.4 0.00022 4.7E-09 64.1 5.5 104 58-165 1-123 (329)
87 PRK05671 aspartate-semialdehyd 97.4 0.00049 1.1E-08 61.6 7.7 90 57-150 3-100 (336)
88 TIGR03023 WcaJ_sugtrans Undeca 97.4 0.00059 1.3E-08 62.2 8.3 86 58-145 128-224 (451)
89 PRK12439 NAD(P)H-dependent gly 97.4 0.00029 6.3E-09 62.4 6.1 95 56-153 5-117 (341)
90 PRK14874 aspartate-semialdehyd 97.4 0.00052 1.1E-08 60.9 7.6 83 59-144 2-91 (334)
91 TIGR01546 GAPDH-II_archae glyc 97.4 0.0003 6.6E-09 63.2 6.1 82 61-145 1-105 (333)
92 COG1748 LYS9 Saccharopine dehy 97.4 0.001 2.2E-08 61.0 9.3 105 58-168 1-118 (389)
93 PF03435 Saccharop_dh: Sacchar 97.4 0.00027 5.8E-09 62.9 5.4 101 61-167 1-116 (386)
94 PF01210 NAD_Gly3P_dh_N: NAD-d 97.4 0.00063 1.4E-08 53.8 6.9 88 60-150 1-106 (157)
95 TIGR03025 EPS_sugtrans exopoly 97.4 0.00072 1.6E-08 61.5 8.1 87 58-145 125-221 (445)
96 PRK15461 NADH-dependent gamma- 97.3 0.00095 2.1E-08 57.9 8.2 102 59-166 2-113 (296)
97 PRK06130 3-hydroxybutyryl-CoA 97.3 0.00059 1.3E-08 59.0 6.8 99 56-158 2-126 (311)
98 TIGR03649 ergot_EASG ergot alk 97.3 0.0012 2.5E-08 55.6 8.4 88 60-147 1-104 (285)
99 PRK06444 prephenate dehydrogen 97.3 0.00048 1E-08 57.5 5.8 51 59-135 1-51 (197)
100 PRK15204 undecaprenyl-phosphat 97.3 0.0012 2.6E-08 61.4 8.8 84 59-144 147-239 (476)
101 PRK08605 D-lactate dehydrogena 97.3 0.00052 1.1E-08 60.9 6.2 100 59-164 147-252 (332)
102 PRK11199 tyrA bifunctional cho 97.3 0.0024 5.1E-08 57.6 10.5 91 58-161 98-188 (374)
103 TIGR03022 WbaP_sugtrans Undeca 97.3 0.00092 2E-08 61.0 7.8 82 58-140 125-216 (456)
104 PLN00016 RNA-binding protein; 97.2 0.0015 3.2E-08 57.9 8.4 89 59-147 53-164 (378)
105 PRK08040 putative semialdehyde 97.2 0.0011 2.3E-08 59.6 7.4 90 57-150 3-100 (336)
106 PRK08655 prephenate dehydrogen 97.2 0.0012 2.7E-08 60.7 8.0 102 59-162 1-106 (437)
107 COG1086 Predicted nucleoside-d 97.2 0.0011 2.4E-08 63.4 7.8 87 56-143 114-208 (588)
108 TIGR01532 E4PD_g-proteo D-eryt 97.2 0.00097 2.1E-08 59.6 7.1 85 60-145 1-119 (325)
109 smart00846 Gp_dh_N Glyceraldeh 97.2 0.00091 2E-08 53.4 6.3 86 59-145 1-117 (149)
110 PLN02383 aspartate semialdehyd 97.2 0.0014 3E-08 58.9 8.1 86 56-143 5-97 (344)
111 PTZ00345 glycerol-3-phosphate 97.2 0.0015 3.2E-08 59.2 8.2 94 58-154 11-136 (365)
112 PRK06545 prephenate dehydrogen 97.2 0.0013 2.9E-08 58.6 7.9 99 60-161 2-108 (359)
113 PLN02712 arogenate dehydrogena 97.2 0.00087 1.9E-08 65.0 7.1 78 57-137 368-447 (667)
114 TIGR01296 asd_B aspartate-semi 97.2 0.00079 1.7E-08 60.1 6.3 79 60-141 1-87 (339)
115 PRK07574 formate dehydrogenase 97.2 0.0023 5.1E-08 58.4 9.2 104 59-168 193-304 (385)
116 CHL00194 ycf39 Ycf39; Provisio 97.2 0.0024 5.1E-08 55.1 8.8 88 59-148 1-110 (317)
117 PLN02545 3-hydroxybutyryl-CoA 97.1 0.00085 1.8E-08 57.8 5.8 98 58-160 4-132 (295)
118 PLN03139 formate dehydrogenase 97.1 0.0026 5.6E-08 58.1 8.9 105 58-167 199-310 (386)
119 PRK14620 NAD(P)H-dependent gly 97.1 0.0021 4.6E-08 56.0 7.8 91 59-152 1-111 (326)
120 COG2910 Putative NADH-flavin r 97.1 0.0038 8.2E-08 52.8 8.7 103 59-163 1-136 (211)
121 PTZ00142 6-phosphogluconate de 97.1 0.0027 5.9E-08 59.3 8.8 107 59-168 2-121 (470)
122 PLN02712 arogenate dehydrogena 97.1 0.0028 6.1E-08 61.5 9.1 77 57-136 51-129 (667)
123 PRK06728 aspartate-semialdehyd 97.1 0.0018 4E-08 58.4 7.3 84 57-143 4-96 (347)
124 PRK13243 glyoxylate reductase; 97.1 0.0013 2.9E-08 58.4 6.3 105 58-168 150-260 (333)
125 TIGR03026 NDP-sugDHase nucleot 97.1 0.0023 5E-08 57.9 7.8 98 59-159 1-131 (411)
126 PRK07502 cyclohexadienyl dehyd 97.0 0.002 4.4E-08 55.8 7.2 99 59-161 7-113 (307)
127 PF00044 Gp_dh_N: Glyceraldehy 97.0 0.00058 1.3E-08 54.8 3.5 86 59-145 1-118 (151)
128 PRK08955 glyceraldehyde-3-phos 97.0 0.0011 2.3E-08 59.6 5.4 85 59-145 3-118 (334)
129 PLN02657 3,8-divinyl protochlo 97.0 0.0057 1.2E-07 55.0 10.1 93 56-148 58-182 (390)
130 PRK06598 aspartate-semialdehyd 97.0 0.002 4.3E-08 58.7 7.1 80 58-141 1-91 (369)
131 PRK06436 glycerate dehydrogena 97.0 0.0036 7.7E-08 55.3 8.4 100 58-165 122-226 (303)
132 TIGR03376 glycerol3P_DH glycer 97.0 0.0014 3E-08 58.8 5.7 91 60-153 1-122 (342)
133 PLN02350 phosphogluconate dehy 97.0 0.0016 3.4E-08 61.3 6.2 109 59-169 7-128 (493)
134 PRK12480 D-lactate dehydrogena 97.0 0.0032 6.9E-08 56.1 7.8 102 59-167 147-253 (330)
135 PF02826 2-Hacid_dh_C: D-isome 97.0 0.00037 8.1E-09 56.2 1.7 103 58-167 36-146 (178)
136 PRK08507 prephenate dehydrogen 96.9 0.003 6.4E-08 54.0 7.1 93 60-157 2-99 (275)
137 PRK08818 prephenate dehydrogen 96.9 0.0099 2.1E-07 54.1 10.7 90 58-158 4-98 (370)
138 PRK11863 N-acetyl-gamma-glutam 96.9 0.0032 7E-08 56.1 7.3 76 58-143 2-78 (313)
139 PF04321 RmlD_sub_bind: RmlD s 96.9 0.0015 3.3E-08 56.2 5.1 83 59-147 1-101 (286)
140 TIGR00873 gnd 6-phosphoglucona 96.9 0.0023 5E-08 59.7 6.4 105 60-167 1-117 (467)
141 TIGR00715 precor6x_red precorr 96.9 0.0039 8.5E-08 53.9 7.4 85 59-144 1-97 (256)
142 TIGR01851 argC_other N-acetyl- 96.8 0.0042 9.1E-08 55.4 7.4 75 59-143 2-77 (310)
143 PRK07531 bifunctional 3-hydrox 96.8 0.0029 6.3E-08 58.9 6.7 96 59-157 5-126 (495)
144 PRK00257 erythronate-4-phospha 96.8 0.0046 1E-07 56.4 7.8 99 58-163 116-222 (381)
145 PRK11064 wecC UDP-N-acetyl-D-m 96.8 0.0052 1.1E-07 56.1 8.1 103 58-161 3-132 (415)
146 COG2084 MmsB 3-hydroxyisobutyr 96.8 0.0072 1.6E-07 53.4 8.7 107 59-168 1-115 (286)
147 PRK05808 3-hydroxybutyryl-CoA 96.8 0.0034 7.4E-08 53.7 6.5 97 59-159 4-130 (282)
148 PF13727 CoA_binding_3: CoA-bi 96.8 0.0036 7.9E-08 48.2 5.8 86 58-144 77-173 (175)
149 KOG1203 Predicted dehydrogenas 96.8 0.0047 1E-07 57.1 7.3 38 53-90 74-111 (411)
150 TIGR03013 EpsB_2 sugar transfe 96.7 0.0039 8.5E-08 57.1 6.8 87 58-145 124-219 (442)
151 PRK10124 putative UDP-glucose 96.7 0.0061 1.3E-07 56.5 8.1 84 59-145 144-236 (463)
152 PRK06522 2-dehydropantoate 2-r 96.7 0.005 1.1E-07 52.2 6.7 90 59-154 1-107 (304)
153 COG0057 GapA Glyceraldehyde-3- 96.7 0.0039 8.4E-08 56.2 6.2 91 58-149 1-124 (335)
154 PRK08293 3-hydroxybutyryl-CoA 96.7 0.004 8.7E-08 53.5 6.1 97 59-158 4-131 (287)
155 PRK09260 3-hydroxybutyryl-CoA 96.7 0.0023 4.9E-08 55.0 4.5 97 59-159 2-129 (288)
156 PRK14806 bifunctional cyclohex 96.7 0.0083 1.8E-07 57.9 8.7 100 59-162 4-111 (735)
157 PRK15438 erythronate-4-phospha 96.7 0.007 1.5E-07 55.2 7.7 100 58-164 116-223 (378)
158 PLN02358 glyceraldehyde-3-phos 96.7 0.0032 6.8E-08 56.7 5.4 90 56-147 3-126 (338)
159 PLN00141 Tic62-NAD(P)-related 96.6 0.016 3.4E-07 48.1 9.2 91 58-148 17-132 (251)
160 PRK12921 2-dehydropantoate 2-r 96.6 0.013 2.8E-07 49.9 8.7 92 59-154 1-109 (305)
161 PRK15469 ghrA bifunctional gly 96.6 0.013 2.9E-07 51.8 8.9 99 58-164 136-242 (312)
162 PRK08229 2-dehydropantoate 2-r 96.6 0.0045 9.8E-08 53.9 5.9 90 59-153 3-113 (341)
163 cd01492 Aos1_SUMO Ubiquitin ac 96.6 0.013 2.7E-07 48.5 8.2 36 58-94 21-56 (197)
164 smart00859 Semialdhyde_dh Semi 96.6 0.0038 8.2E-08 46.9 4.6 81 60-141 1-94 (122)
165 TIGR01327 PGDH D-3-phosphoglyc 96.6 0.0054 1.2E-07 57.8 6.6 105 59-168 139-249 (525)
166 PTZ00023 glyceraldehyde-3-phos 96.6 0.0053 1.2E-07 55.3 6.3 88 59-148 3-122 (337)
167 PRK06035 3-hydroxyacyl-CoA deh 96.5 0.0074 1.6E-07 51.9 6.7 96 59-159 4-133 (291)
168 PRK06813 homoserine dehydrogen 96.5 0.011 2.3E-07 53.4 7.8 106 58-165 2-140 (346)
169 PLN02695 GDP-D-mannose-3',5'-e 96.5 0.017 3.6E-07 51.4 8.9 94 53-148 16-137 (370)
170 PRK08410 2-hydroxyacid dehydro 96.5 0.0051 1.1E-07 54.2 5.5 63 58-126 145-207 (311)
171 cd05211 NAD_bind_Glu_Leu_Phe_V 96.5 0.008 1.7E-07 50.7 6.4 87 58-149 23-128 (217)
172 TIGR02356 adenyl_thiF thiazole 96.4 0.015 3.2E-07 48.1 7.6 35 58-93 21-55 (202)
173 PRK11790 D-3-phosphoglycerate 96.4 0.014 3E-07 53.5 8.0 104 58-167 151-258 (409)
174 COG0136 Asd Aspartate-semialde 96.4 0.011 2.4E-07 53.3 7.0 88 58-145 1-96 (334)
175 PRK06932 glycerate dehydrogena 96.3 0.012 2.7E-07 51.9 7.1 60 59-125 148-207 (314)
176 cd05213 NAD_bind_Glutamyl_tRNA 96.3 0.0057 1.2E-07 53.6 4.9 104 57-163 177-301 (311)
177 COG0111 SerA Phosphoglycerate 96.3 0.0056 1.2E-07 54.6 4.9 102 59-166 143-251 (324)
178 PRK13535 erythrose 4-phosphate 96.3 0.01 2.2E-07 53.5 6.5 88 58-147 1-122 (336)
179 PRK07530 3-hydroxybutyryl-CoA 96.3 0.012 2.5E-07 50.6 6.7 95 58-157 4-129 (292)
180 PLN02858 fructose-bisphosphate 96.3 0.016 3.5E-07 60.5 8.8 102 58-164 324-434 (1378)
181 TIGR01214 rmlD dTDP-4-dehydror 96.3 0.014 3.1E-07 48.6 6.9 80 60-145 1-98 (287)
182 COG1091 RfbD dTDP-4-dehydrorha 96.3 0.013 2.9E-07 51.6 6.8 82 59-147 1-100 (281)
183 COG0287 TyrA Prephenate dehydr 96.2 0.036 7.8E-07 48.6 9.4 102 58-162 3-112 (279)
184 PRK08223 hypothetical protein; 96.2 0.027 5.8E-07 49.8 8.6 85 58-145 27-150 (287)
185 TIGR01179 galE UDP-glucose-4-e 96.2 0.033 7.2E-07 46.6 8.8 89 60-148 1-121 (328)
186 PRK13581 D-3-phosphoglycerate 96.2 0.012 2.6E-07 55.5 6.5 104 58-167 140-249 (526)
187 TIGR03466 HpnA hopanoid-associ 96.2 0.038 8.3E-07 46.5 9.0 86 60-148 2-113 (328)
188 PRK12475 thiamine/molybdopteri 96.2 0.028 6.1E-07 50.3 8.4 35 58-93 24-58 (338)
189 cd01485 E1-1_like Ubiquitin ac 96.1 0.037 8E-07 45.7 8.5 90 58-150 19-149 (198)
190 TIGR00936 ahcY adenosylhomocys 96.1 0.015 3.3E-07 53.5 6.7 102 57-164 194-299 (406)
191 TIGR01745 asd_gamma aspartate- 96.1 0.015 3.3E-07 53.0 6.5 82 59-142 1-91 (366)
192 PRK07403 glyceraldehyde-3-phos 96.1 0.013 2.9E-07 52.8 5.9 88 58-147 1-121 (337)
193 PLN03209 translocon at the inn 96.1 0.02 4.4E-07 55.0 7.5 95 52-148 74-208 (576)
194 PLN02696 1-deoxy-D-xylulose-5- 96.1 0.032 6.9E-07 52.3 8.6 113 50-178 49-196 (454)
195 PLN02166 dTDP-glucose 4,6-dehy 96.1 0.03 6.5E-07 51.4 8.3 96 48-145 110-232 (436)
196 PRK10675 UDP-galactose-4-epime 96.1 0.042 9.1E-07 47.0 8.7 90 59-148 1-124 (338)
197 COG2085 Predicted dinucleotide 96.0 0.034 7.5E-07 47.3 7.9 87 58-147 1-93 (211)
198 PLN02928 oxidoreductase family 96.0 0.022 4.8E-07 51.0 7.1 102 58-165 159-279 (347)
199 PLN02858 fructose-bisphosphate 96.0 0.017 3.6E-07 60.4 6.9 105 58-166 4-116 (1378)
200 PLN02240 UDP-glucose 4-epimera 95.9 0.066 1.4E-06 46.1 9.5 90 59-148 6-132 (352)
201 PRK07729 glyceraldehyde-3-phos 95.9 0.024 5.1E-07 51.4 6.8 87 59-147 3-120 (343)
202 PRK05447 1-deoxy-D-xylulose 5- 95.9 0.019 4.2E-07 52.7 6.2 88 58-145 1-121 (385)
203 PRK15425 gapA glyceraldehyde-3 95.9 0.024 5.2E-07 51.1 6.7 86 59-145 3-119 (331)
204 PRK09987 dTDP-4-dehydrorhamnos 95.9 0.028 6.1E-07 48.2 7.0 86 59-148 1-104 (299)
205 PRK07066 3-hydroxybutyryl-CoA 95.9 0.032 7E-07 49.8 7.4 97 58-157 7-129 (321)
206 cd01065 NAD_bind_Shikimate_DH 95.8 0.0045 9.9E-08 47.5 1.7 103 58-167 19-133 (155)
207 PLN02725 GDP-4-keto-6-deoxyman 95.8 0.045 9.8E-07 45.9 7.8 82 62-148 1-101 (306)
208 PLN03096 glyceraldehyde-3-phos 95.8 0.03 6.6E-07 51.6 7.2 86 59-145 61-180 (395)
209 PRK06129 3-hydroxyacyl-CoA deh 95.8 0.026 5.6E-07 49.1 6.3 65 58-126 2-93 (308)
210 PRK05476 S-adenosyl-L-homocyst 95.8 0.025 5.3E-07 52.5 6.5 100 57-162 211-314 (425)
211 COG4693 PchG Oxidoreductase (N 95.8 0.011 2.5E-07 52.8 4.1 101 59-165 5-115 (361)
212 PF00899 ThiF: ThiF family; I 95.8 0.034 7.4E-07 42.5 6.3 104 58-165 2-116 (135)
213 PRK06182 short chain dehydroge 95.7 0.14 3.1E-06 42.6 10.5 79 58-150 3-84 (273)
214 PRK12825 fabG 3-ketoacyl-(acyl 95.7 0.14 2.9E-06 41.0 9.9 85 58-149 6-93 (249)
215 PRK15409 bifunctional glyoxyla 95.7 0.043 9.2E-07 48.8 7.5 104 58-167 145-255 (323)
216 PRK06487 glycerate dehydrogena 95.7 0.019 4.2E-07 50.7 5.3 61 58-126 148-208 (317)
217 PRK05690 molybdopterin biosynt 95.7 0.042 9.1E-07 46.9 7.1 85 58-145 32-153 (245)
218 COG3804 Uncharacterized conser 95.6 0.038 8.2E-07 49.5 6.9 107 59-168 3-125 (350)
219 KOG0409 Predicted dehydrogenas 95.6 0.02 4.3E-07 51.4 5.0 103 57-164 34-146 (327)
220 PRK15181 Vi polysaccharide bio 95.6 0.082 1.8E-06 46.2 8.8 94 52-147 9-140 (348)
221 PLN02214 cinnamoyl-CoA reducta 95.6 0.088 1.9E-06 46.1 8.9 90 57-148 9-127 (342)
222 PLN02272 glyceraldehyde-3-phos 95.5 0.018 3.9E-07 53.4 4.7 86 59-145 86-204 (421)
223 TIGR02355 moeB molybdopterin s 95.5 0.076 1.6E-06 45.3 8.2 88 58-148 24-148 (240)
224 PRK06249 2-dehydropantoate 2-r 95.5 0.075 1.6E-06 46.2 8.3 94 58-155 5-114 (313)
225 cd01483 E1_enzyme_family Super 95.5 0.082 1.8E-06 40.6 7.6 33 60-93 1-33 (143)
226 PRK07819 3-hydroxybutyryl-CoA 95.5 0.029 6.3E-07 48.7 5.6 99 57-160 4-134 (286)
227 TIGR01777 yfcH conserved hypot 95.4 0.056 1.2E-06 44.8 6.9 85 61-147 1-110 (292)
228 PF02737 3HCDH_N: 3-hydroxyacy 95.4 0.0057 1.2E-07 49.7 0.9 94 60-158 1-125 (180)
229 PRK08328 hypothetical protein; 95.4 0.089 1.9E-06 44.4 8.0 35 58-93 27-61 (231)
230 PRK12938 acetyacetyl-CoA reduc 95.3 0.2 4.4E-06 40.6 9.8 84 59-151 4-92 (246)
231 PF03721 UDPG_MGDP_dh_N: UDP-g 95.3 0.1 2.2E-06 42.8 7.8 101 59-162 1-138 (185)
232 PTZ00434 cytosolic glyceraldeh 95.2 0.065 1.4E-06 48.9 7.0 88 59-148 4-136 (361)
233 PRK12829 short chain dehydroge 95.2 0.27 5.7E-06 40.2 10.0 85 56-150 9-96 (264)
234 PRK07411 hypothetical protein; 95.2 0.11 2.3E-06 47.4 8.3 90 58-150 38-164 (390)
235 PRK06953 short chain dehydroge 95.2 0.13 2.9E-06 41.5 8.1 79 59-151 2-81 (222)
236 PRK09436 thrA bifunctional asp 95.1 0.075 1.6E-06 52.8 7.8 112 57-169 464-603 (819)
237 COG4091 Predicted homoserine d 95.1 0.069 1.5E-06 49.2 6.9 88 56-144 15-131 (438)
238 COG0460 ThrA Homoserine dehydr 95.1 0.077 1.7E-06 47.9 7.1 106 57-164 2-130 (333)
239 cd00757 ThiF_MoeB_HesA_family 95.1 0.15 3.3E-06 42.6 8.6 35 58-93 21-55 (228)
240 PRK10538 malonic semialdehyde 95.0 0.24 5.2E-06 40.6 9.4 81 59-150 1-84 (248)
241 PRK08177 short chain dehydroge 95.0 0.12 2.6E-06 41.8 7.4 80 59-150 2-81 (225)
242 TIGR01181 dTDP_gluc_dehyt dTDP 95.0 0.15 3.3E-06 42.4 8.3 64 60-124 1-82 (317)
243 PRK15182 Vi polysaccharide bio 95.0 0.078 1.7E-06 48.8 7.0 65 58-126 6-87 (425)
244 PLN02662 cinnamyl-alcohol dehy 95.0 0.21 4.5E-06 42.4 9.1 90 57-148 3-127 (322)
245 TIGR02622 CDP_4_6_dhtase CDP-g 95.0 0.21 4.6E-06 43.4 9.4 90 58-148 4-127 (349)
246 PRK06901 aspartate-semialdehyd 95.0 0.054 1.2E-06 48.7 5.7 84 58-145 3-94 (322)
247 PRK06179 short chain dehydroge 94.9 0.35 7.5E-06 40.0 10.1 77 58-150 4-83 (270)
248 PRK09466 metL bifunctional asp 94.9 0.13 2.9E-06 51.2 8.7 108 57-166 457-594 (810)
249 KOG0023 Alcohol dehydrogenase, 94.9 0.17 3.6E-06 46.1 8.5 93 53-162 177-269 (360)
250 TIGR00243 Dxr 1-deoxy-D-xylulo 94.8 0.12 2.7E-06 47.6 7.8 104 59-178 2-140 (389)
251 PLN02206 UDP-glucuronate decar 94.8 0.28 6.2E-06 45.1 10.2 87 57-145 118-231 (442)
252 PRK12557 H(2)-dependent methyl 94.8 0.18 4E-06 45.3 8.7 85 73-161 34-130 (342)
253 PRK15057 UDP-glucose 6-dehydro 94.8 0.056 1.2E-06 49.2 5.5 101 59-164 1-133 (388)
254 PLN02583 cinnamoyl-CoA reducta 94.8 0.25 5.4E-06 42.2 9.2 89 58-148 6-128 (297)
255 PRK07878 molybdopterin biosynt 94.8 0.16 3.5E-06 46.1 8.4 36 57-93 41-76 (392)
256 KOG1502 Flavonol reductase/cin 94.7 0.17 3.8E-06 45.6 8.4 88 57-147 5-127 (327)
257 TIGR02853 spore_dpaA dipicolin 94.7 0.049 1.1E-06 47.6 4.8 86 58-148 151-241 (287)
258 PRK05557 fabG 3-ketoacyl-(acyl 94.7 0.51 1.1E-05 37.7 10.4 85 58-150 5-93 (248)
259 cd01487 E1_ThiF_like E1_ThiF_l 94.7 0.14 2.9E-06 41.5 7.0 83 60-145 1-120 (174)
260 PRK08644 thiamine biosynthesis 94.7 0.14 3.1E-06 42.7 7.3 85 58-145 28-149 (212)
261 PRK09414 glutamate dehydrogena 94.7 0.13 2.7E-06 48.2 7.5 98 58-159 232-356 (445)
262 PRK12828 short chain dehydroge 94.6 0.48 1.1E-05 37.7 10.0 83 58-150 7-92 (239)
263 PRK06057 short chain dehydroge 94.6 0.58 1.3E-05 38.4 10.7 80 58-150 7-89 (255)
264 PRK05693 short chain dehydroge 94.6 0.23 5E-06 41.4 8.3 78 59-150 2-82 (274)
265 PLN02494 adenosylhomocysteinas 94.6 0.052 1.1E-06 51.2 4.8 99 58-162 254-356 (477)
266 COG0569 TrkA K+ transport syst 94.6 0.11 2.3E-06 43.8 6.3 86 59-147 1-100 (225)
267 PRK10217 dTDP-glucose 4,6-dehy 94.5 0.25 5.4E-06 42.7 8.7 65 59-123 2-82 (355)
268 COG1064 AdhP Zn-dependent alco 94.5 0.055 1.2E-06 49.0 4.7 87 53-143 162-256 (339)
269 PLN02896 cinnamyl-alcohol dehy 94.5 0.22 4.8E-06 43.3 8.4 31 58-88 10-40 (353)
270 PLN02572 UDP-sulfoquinovose sy 94.5 0.35 7.7E-06 44.4 10.1 30 58-87 47-76 (442)
271 PRK07688 thiamine/molybdopteri 94.5 0.13 2.9E-06 46.0 7.1 35 58-93 24-58 (339)
272 PRK06180 short chain dehydroge 94.5 0.5 1.1E-05 39.6 10.2 80 58-150 4-88 (277)
273 PRK05993 short chain dehydroge 94.5 0.39 8.5E-06 40.3 9.6 79 58-150 4-86 (277)
274 cd00401 AdoHcyase S-adenosyl-L 94.5 0.079 1.7E-06 49.0 5.8 80 57-140 201-283 (413)
275 PLN02306 hydroxypyruvate reduc 94.5 0.14 3.1E-06 46.8 7.4 102 58-164 165-288 (386)
276 PRK05600 thiamine biosynthesis 94.4 0.17 3.8E-06 45.8 7.8 87 58-147 41-164 (370)
277 COG1086 Predicted nucleoside-d 94.4 0.1 2.3E-06 50.2 6.5 105 58-162 250-400 (588)
278 PRK12320 hypothetical protein; 94.4 0.12 2.7E-06 50.7 7.1 87 59-149 1-103 (699)
279 PRK05865 hypothetical protein; 94.4 0.22 4.8E-06 50.0 9.0 90 59-150 1-105 (854)
280 PRK06463 fabG 3-ketoacyl-(acyl 94.4 0.69 1.5E-05 38.0 10.6 80 58-150 7-89 (255)
281 PLN02237 glyceraldehyde-3-phos 94.3 0.12 2.7E-06 48.3 6.7 87 59-147 76-196 (442)
282 PRK07825 short chain dehydroge 94.3 0.49 1.1E-05 39.3 9.7 79 59-150 6-88 (273)
283 PRK07577 short chain dehydroge 94.3 0.74 1.6E-05 36.9 10.5 75 58-150 3-78 (234)
284 PRK03659 glutathione-regulated 94.3 0.064 1.4E-06 51.3 4.9 81 58-139 400-489 (601)
285 PRK09186 flagellin modificatio 94.3 0.38 8.3E-06 39.2 8.8 85 58-147 4-91 (256)
286 PRK08267 short chain dehydroge 94.3 0.33 7.1E-06 39.9 8.5 82 59-150 2-87 (260)
287 PRK09496 trkA potassium transp 94.2 0.087 1.9E-06 47.4 5.4 87 59-149 1-101 (453)
288 PLN02700 homoserine dehydrogen 94.2 0.13 2.9E-06 47.1 6.6 31 115-145 109-139 (377)
289 cd01491 Ube1_repeat1 Ubiquitin 94.2 0.21 4.5E-06 44.1 7.6 103 58-168 19-132 (286)
290 PRK06398 aldose dehydrogenase; 94.2 0.54 1.2E-05 39.0 9.7 73 59-150 7-82 (258)
291 PRK12746 short chain dehydroge 94.2 0.48 1E-05 38.6 9.3 84 59-150 7-100 (254)
292 PLN02778 3,5-epimerase/4-reduc 94.2 0.26 5.6E-06 42.5 8.0 79 58-145 9-108 (298)
293 PRK06139 short chain dehydroge 94.2 0.2 4.3E-06 44.1 7.4 83 58-150 7-94 (330)
294 PRK11150 rfaD ADP-L-glycero-D- 94.2 0.17 3.7E-06 42.9 6.8 85 61-145 2-114 (308)
295 PRK05597 molybdopterin biosynt 94.2 0.21 4.6E-06 44.9 7.6 35 58-93 28-62 (355)
296 PRK03562 glutathione-regulated 94.2 0.073 1.6E-06 51.2 5.0 101 58-161 400-510 (621)
297 TIGR02354 thiF_fam2 thiamine b 94.2 0.3 6.5E-06 40.5 8.0 93 58-152 21-123 (200)
298 PRK15116 sulfur acceptor prote 94.1 0.3 6.5E-06 42.7 8.3 35 57-92 29-63 (268)
299 PF02558 ApbA: Ketopantoate re 94.1 0.12 2.7E-06 39.5 5.3 92 61-154 1-108 (151)
300 PRK07231 fabG 3-ketoacyl-(acyl 94.1 0.47 1E-05 38.3 9.0 84 58-150 5-91 (251)
301 PRK08278 short chain dehydroge 94.0 0.61 1.3E-05 39.1 9.8 89 58-150 6-100 (273)
302 COG4569 MhpF Acetaldehyde dehy 94.0 0.13 2.9E-06 44.5 5.7 86 58-144 4-100 (310)
303 PRK00683 murD UDP-N-acetylmura 94.0 0.1 2.2E-06 47.2 5.4 77 59-141 4-85 (418)
304 PLN02986 cinnamyl-alcohol dehy 94.0 0.52 1.1E-05 40.2 9.5 34 57-90 4-37 (322)
305 PRK07326 short chain dehydroge 94.0 0.49 1.1E-05 38.0 8.8 83 58-149 6-91 (237)
306 PRK12745 3-ketoacyl-(acyl-carr 94.0 0.35 7.6E-06 39.4 8.0 84 59-150 3-90 (256)
307 PTZ00353 glycosomal glyceralde 94.0 0.1 2.3E-06 47.2 5.3 87 59-146 3-123 (342)
308 PLN02260 probable rhamnose bio 94.0 0.2 4.4E-06 47.8 7.6 80 57-145 379-479 (668)
309 cd01075 NAD_bind_Leu_Phe_Val_D 93.9 0.11 2.5E-06 42.8 5.1 60 59-122 29-92 (200)
310 PRK07454 short chain dehydroge 93.9 0.72 1.6E-05 37.3 9.7 87 56-150 4-93 (241)
311 PRK06719 precorrin-2 dehydroge 93.9 0.14 2.9E-06 41.0 5.3 83 54-140 9-95 (157)
312 TIGR01832 kduD 2-deoxy-D-gluco 93.9 0.73 1.6E-05 37.4 9.7 83 58-150 5-90 (248)
313 PRK05565 fabG 3-ketoacyl-(acyl 93.8 0.23 5E-06 39.9 6.7 85 59-150 6-93 (247)
314 PRK08057 cobalt-precorrin-6x r 93.8 0.25 5.4E-06 42.6 7.2 87 58-145 2-98 (248)
315 COG1810 Uncharacterized protei 93.8 0.75 1.6E-05 39.6 9.9 98 58-164 1-104 (224)
316 PRK07985 oxidoreductase; Provi 93.8 1 2.2E-05 38.5 10.8 84 59-150 50-138 (294)
317 PF01370 Epimerase: NAD depend 93.8 0.24 5.3E-06 39.5 6.6 87 61-147 1-115 (236)
318 PLN02653 GDP-mannose 4,6-dehyd 93.8 0.58 1.3E-05 40.3 9.4 31 58-88 6-36 (340)
319 PRK08268 3-hydroxy-acyl-CoA de 93.7 0.053 1.1E-06 51.0 3.1 111 57-171 6-147 (507)
320 PRK08642 fabG 3-ketoacyl-(acyl 93.7 0.87 1.9E-05 36.9 9.9 82 59-150 6-91 (253)
321 PRK10669 putative cation:proto 93.7 0.13 2.9E-06 48.4 5.6 100 58-161 417-527 (558)
322 cd01076 NAD_bind_1_Glu_DH NAD( 93.6 0.11 2.3E-06 44.1 4.5 33 58-91 31-63 (227)
323 PRK06138 short chain dehydroge 93.6 0.57 1.2E-05 38.0 8.7 84 58-150 5-91 (252)
324 PRK11908 NAD-dependent epimera 93.6 0.56 1.2E-05 40.7 9.1 85 58-145 1-116 (347)
325 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.6 0.062 1.3E-06 50.6 3.2 115 58-176 5-152 (503)
326 PRK08289 glyceraldehyde-3-phos 93.6 0.2 4.4E-06 47.3 6.6 88 57-145 126-257 (477)
327 PRK05653 fabG 3-ketoacyl-(acyl 93.5 0.56 1.2E-05 37.4 8.4 83 58-147 5-90 (246)
328 PRK07890 short chain dehydroge 93.5 0.32 6.9E-06 39.7 7.1 85 57-150 4-92 (258)
329 PTZ00075 Adenosylhomocysteinas 93.5 0.2 4.4E-06 47.2 6.6 96 58-160 254-354 (476)
330 PRK07814 short chain dehydroge 93.5 0.53 1.1E-05 39.0 8.5 82 58-149 10-96 (263)
331 PRK12744 short chain dehydroge 93.5 0.65 1.4E-05 38.2 8.9 86 58-150 8-99 (257)
332 TIGR01472 gmd GDP-mannose 4,6- 93.5 0.58 1.3E-05 40.5 9.0 29 60-88 2-30 (343)
333 PRK12429 3-hydroxybutyrate deh 93.5 0.64 1.4E-05 37.7 8.7 84 58-149 4-90 (258)
334 TIGR00112 proC pyrroline-5-car 93.5 0.36 7.7E-06 40.9 7.4 59 100-160 30-90 (245)
335 KOG2380 Prephenate dehydrogena 93.4 0.12 2.7E-06 47.6 4.8 82 53-136 47-129 (480)
336 PRK06171 sorbitol-6-phosphate 93.4 0.89 1.9E-05 37.5 9.6 75 58-150 9-87 (266)
337 PLN00203 glutamyl-tRNA reducta 93.4 0.071 1.5E-06 50.6 3.4 76 58-136 266-353 (519)
338 PRK06523 short chain dehydroge 93.4 0.78 1.7E-05 37.6 9.2 75 58-149 9-86 (260)
339 PRK10084 dTDP-glucose 4,6 dehy 93.4 0.42 9E-06 41.3 7.9 66 59-124 1-82 (352)
340 PF01488 Shikimate_DH: Shikima 93.4 0.052 1.1E-06 41.9 2.0 85 58-146 12-108 (135)
341 PRK12939 short chain dehydroge 93.4 1.1 2.5E-05 36.0 10.0 84 58-150 7-94 (250)
342 cd01484 E1-2_like Ubiquitin ac 93.3 0.31 6.7E-06 41.7 6.9 89 60-151 1-128 (234)
343 PF01073 3Beta_HSD: 3-beta hyd 93.3 0.35 7.6E-06 41.7 7.3 84 62-147 1-115 (280)
344 PLN02477 glutamate dehydrogena 93.3 0.52 1.1E-05 43.6 8.7 33 58-91 206-238 (410)
345 cd01493 APPBP1_RUB Ubiquitin a 93.2 0.43 9.4E-06 44.3 8.1 35 58-93 20-54 (425)
346 PRK08993 2-deoxy-D-gluconate 3 93.2 1.1 2.5E-05 36.8 10.0 82 59-150 11-95 (253)
347 PTZ00325 malate dehydrogenase; 93.2 0.57 1.2E-05 41.9 8.6 100 55-158 5-134 (321)
348 PLN02427 UDP-apiose/xylose syn 93.2 0.59 1.3E-05 41.3 8.7 31 58-88 14-45 (386)
349 PRK12827 short chain dehydroge 93.2 1.2 2.5E-05 35.8 9.8 87 58-150 6-97 (249)
350 cd01080 NAD_bind_m-THF_DH_Cycl 93.2 0.17 3.7E-06 41.1 4.8 55 58-127 44-99 (168)
351 PRK08703 short chain dehydroge 93.1 0.43 9.3E-06 38.7 7.1 33 59-92 7-39 (239)
352 PRK08017 oxidoreductase; Provi 93.1 1.6 3.5E-05 35.5 10.5 78 59-150 3-84 (256)
353 PRK06500 short chain dehydroge 93.1 1.5 3.3E-05 35.3 10.3 80 58-150 6-90 (249)
354 PLN02650 dihydroflavonol-4-red 93.1 0.48 1E-05 41.1 7.8 88 58-147 5-127 (351)
355 PRK06077 fabG 3-ketoacyl-(acyl 93.0 0.86 1.9E-05 36.9 8.8 85 58-150 6-94 (252)
356 PRK12743 oxidoreductase; Provi 93.0 0.63 1.4E-05 38.3 8.2 85 59-150 3-90 (256)
357 PRK05872 short chain dehydroge 93.0 1.3 2.8E-05 37.7 10.2 80 58-150 9-95 (296)
358 PRK08618 ornithine cyclodeamin 93.0 0.1 2.2E-06 46.0 3.5 95 58-158 127-235 (325)
359 PRK08306 dipicolinate synthase 92.9 0.11 2.4E-06 45.4 3.7 69 58-130 152-225 (296)
360 PRK08085 gluconate 5-dehydroge 92.9 1.1 2.3E-05 36.7 9.3 84 58-150 9-96 (254)
361 PRK06841 short chain dehydroge 92.9 0.48 1E-05 38.6 7.2 82 58-150 15-99 (255)
362 TIGR01746 Thioester-redct thio 92.9 0.7 1.5E-05 39.1 8.4 31 60-90 1-33 (367)
363 TIGR01534 GAPDH-I glyceraldehy 92.9 0.27 5.8E-06 44.2 6.0 85 60-145 1-120 (327)
364 cd00755 YgdL_like Family of ac 92.8 0.41 8.9E-06 40.8 6.9 90 58-149 11-137 (231)
365 PRK07060 short chain dehydroge 92.8 1.5 3.2E-05 35.3 9.9 77 59-150 10-87 (245)
366 PRK09287 6-phosphogluconate de 92.8 0.29 6.4E-06 45.7 6.5 99 70-169 1-110 (459)
367 TIGR01724 hmd_rel H2-forming N 92.8 1.3 2.9E-05 40.2 10.3 87 71-160 32-128 (341)
368 PRK06198 short chain dehydroge 92.7 1.3 2.8E-05 36.2 9.6 84 58-151 6-95 (260)
369 PRK12481 2-deoxy-D-gluconate 3 92.7 0.9 2E-05 37.5 8.6 81 58-150 8-93 (251)
370 PF02670 DXP_reductoisom: 1-de 92.7 0.14 3E-06 40.3 3.5 85 61-145 1-120 (129)
371 KOG2711 Glycerol-3-phosphate d 92.7 0.34 7.3E-06 44.4 6.4 107 58-168 21-167 (372)
372 PRK05884 short chain dehydroge 92.6 1.1 2.3E-05 36.6 8.9 73 60-145 2-75 (223)
373 PRK06124 gluconate 5-dehydroge 92.6 0.47 1E-05 38.8 6.8 85 58-150 11-98 (256)
374 cd01489 Uba2_SUMO Ubiquitin ac 92.6 0.52 1.1E-05 42.1 7.5 88 60-150 1-126 (312)
375 PRK06046 alanine dehydrogenase 92.5 0.16 3.5E-06 44.9 4.2 80 58-142 129-219 (326)
376 COG1052 LdhA Lactate dehydroge 92.5 0.67 1.5E-05 41.5 8.1 105 58-168 146-256 (324)
377 PRK08217 fabG 3-ketoacyl-(acyl 92.5 0.73 1.6E-05 37.2 7.7 83 58-150 5-92 (253)
378 PRK12937 short chain dehydroge 92.5 1.8 4E-05 34.8 10.0 85 58-150 5-93 (245)
379 PRK09135 pteridine reductase; 92.5 0.86 1.9E-05 36.6 8.1 87 58-150 6-95 (249)
380 COG1023 Gnd Predicted 6-phosph 92.5 0.4 8.7E-06 42.4 6.4 110 60-170 2-116 (300)
381 PRK08125 bifunctional UDP-gluc 92.5 0.83 1.8E-05 43.9 9.2 92 54-148 311-432 (660)
382 PRK08340 glucose-1-dehydrogena 92.4 0.53 1.2E-05 38.8 6.9 83 59-150 1-86 (259)
383 PRK09242 tropinone reductase; 92.4 1 2.3E-05 36.8 8.6 84 58-150 9-98 (257)
384 PRK14031 glutamate dehydrogena 92.4 0.55 1.2E-05 44.0 7.7 33 57-90 227-259 (444)
385 PLN02989 cinnamyl-alcohol dehy 92.4 0.85 1.8E-05 38.9 8.3 91 56-148 3-129 (325)
386 PRK08213 gluconate 5-dehydroge 92.4 0.49 1.1E-05 38.9 6.6 85 58-150 12-99 (259)
387 COG0300 DltE Short-chain dehyd 92.4 0.22 4.7E-06 43.6 4.7 98 57-161 5-111 (265)
388 TIGR03325 BphB_TodD cis-2,3-di 92.3 0.9 1.9E-05 37.5 8.2 80 58-150 5-89 (262)
389 PRK07069 short chain dehydroge 92.3 2.1 4.5E-05 34.6 10.2 83 60-150 1-89 (251)
390 PRK07523 gluconate 5-dehydroge 92.3 1.9 4.1E-05 35.3 10.0 83 58-150 10-97 (255)
391 COG0702 Predicted nucleoside-d 92.3 2.7 5.9E-05 34.2 10.9 108 59-169 1-132 (275)
392 COG0451 WcaG Nucleoside-diphos 92.2 0.74 1.6E-05 38.3 7.6 29 60-88 2-30 (314)
393 PRK06718 precorrin-2 dehydroge 92.2 0.55 1.2E-05 38.9 6.7 113 57-174 9-153 (202)
394 TIGR03589 PseB UDP-N-acetylglu 92.2 0.83 1.8E-05 39.6 8.1 90 58-149 4-126 (324)
395 PRK09291 short chain dehydroge 92.2 1 2.2E-05 36.6 8.2 31 59-89 3-33 (257)
396 COG0565 LasT rRNA methylase [T 92.2 1.7 3.7E-05 37.8 9.8 106 58-167 4-136 (242)
397 cd01078 NAD_bind_H4MPT_DH NADP 92.2 0.25 5.4E-06 39.8 4.5 67 58-127 28-109 (194)
398 PRK12742 oxidoreductase; Provi 92.1 1.4 3E-05 35.4 8.8 31 58-88 6-36 (237)
399 PF10087 DUF2325: Uncharacteri 92.1 1.8 3.9E-05 31.5 8.6 84 60-151 1-87 (97)
400 PRK08762 molybdopterin biosynt 92.1 0.55 1.2E-05 42.2 7.1 35 57-92 134-168 (376)
401 PRK06935 2-deoxy-D-gluconate 3 92.1 1.8 4E-05 35.5 9.7 82 58-150 15-101 (258)
402 PRK12826 3-ketoacyl-(acyl-carr 92.0 1.2 2.5E-05 35.9 8.3 82 58-147 6-91 (251)
403 PRK06395 phosphoribosylamine-- 92.0 0.66 1.4E-05 42.7 7.7 83 58-143 2-93 (435)
404 PRK09134 short chain dehydroge 92.0 1.7 3.7E-05 35.7 9.4 86 58-150 9-97 (258)
405 PRK07062 short chain dehydroge 92.0 2.1 4.5E-05 35.3 10.0 84 58-150 8-97 (265)
406 PRK06181 short chain dehydroge 92.0 1.9 4.2E-05 35.3 9.7 84 59-150 2-88 (263)
407 PRK07666 fabG 3-ketoacyl-(acyl 92.0 0.74 1.6E-05 37.2 7.1 82 59-150 8-94 (239)
408 PRK08063 enoyl-(acyl carrier p 91.9 1.6 3.5E-05 35.3 9.1 82 59-147 5-90 (250)
409 PRK06947 glucose-1-dehydrogena 91.9 1.1 2.5E-05 36.3 8.2 84 59-149 3-89 (248)
410 PRK08265 short chain dehydroge 91.9 2.5 5.4E-05 35.0 10.4 80 58-150 6-90 (261)
411 PRK14851 hypothetical protein; 91.9 0.65 1.4E-05 45.6 7.8 33 58-91 43-75 (679)
412 PRK08226 short chain dehydroge 91.9 2.1 4.5E-05 35.1 9.8 83 58-150 6-92 (263)
413 TIGR02197 heptose_epim ADP-L-g 91.9 0.98 2.1E-05 37.9 8.0 84 61-145 1-112 (314)
414 PRK12936 3-ketoacyl-(acyl-carr 91.8 2.7 5.8E-05 33.8 10.2 80 58-150 6-90 (245)
415 PRK07109 short chain dehydroge 91.6 1.8 3.9E-05 37.9 9.7 83 58-150 8-95 (334)
416 PTZ00079 NADP-specific glutama 91.6 1 2.2E-05 42.3 8.5 101 58-159 237-365 (454)
417 PLN02260 probable rhamnose bio 91.6 1.2 2.6E-05 42.6 9.1 90 58-148 6-132 (668)
418 PTZ00117 malate dehydrogenase; 91.5 1 2.2E-05 39.8 8.0 88 57-149 4-123 (319)
419 PRK08324 short chain dehydroge 91.5 1.4 3E-05 42.6 9.6 84 58-150 422-508 (681)
420 PRK07677 short chain dehydroge 91.5 1.8 3.9E-05 35.5 9.0 81 59-149 2-87 (252)
421 PRK08264 short chain dehydroge 91.5 1.7 3.6E-05 35.0 8.7 30 58-87 6-36 (238)
422 PRK06482 short chain dehydroge 91.5 2.5 5.5E-05 35.0 10.0 79 59-150 3-86 (276)
423 PRK12384 sorbitol-6-phosphate 91.5 1 2.2E-05 36.9 7.6 86 59-150 3-91 (259)
424 PRK08416 7-alpha-hydroxysteroi 91.5 1 2.2E-05 37.3 7.6 84 58-149 8-96 (260)
425 PRK06128 oxidoreductase; Provi 91.5 2.8 6.1E-05 35.7 10.5 84 59-150 56-144 (300)
426 TIGR01202 bchC 2-desacetyl-2-h 91.5 0.4 8.6E-06 41.2 5.3 84 57-143 144-228 (308)
427 PLN02686 cinnamoyl-CoA reducta 91.5 1 2.3E-05 39.9 8.1 33 58-90 53-85 (367)
428 PRK06172 short chain dehydroge 91.4 1.2 2.7E-05 36.2 8.0 83 58-150 7-94 (253)
429 PRK14852 hypothetical protein; 91.4 0.7 1.5E-05 47.3 7.6 34 58-92 332-365 (989)
430 PRK08263 short chain dehydroge 91.4 2.7 5.7E-05 35.0 10.1 79 59-150 4-87 (275)
431 PRK07063 short chain dehydroge 91.4 1.8 3.9E-05 35.5 9.0 84 58-150 7-96 (260)
432 PRK07024 short chain dehydroge 91.4 1.4 3.1E-05 36.2 8.4 83 59-150 3-88 (257)
433 PRK08628 short chain dehydroge 91.3 1.4 3.1E-05 36.0 8.3 83 59-150 8-93 (258)
434 PRK05867 short chain dehydroge 91.3 1.6 3.6E-05 35.7 8.6 85 58-150 9-96 (253)
435 TIGR03206 benzo_BadH 2-hydroxy 91.3 1.2 2.5E-05 36.1 7.6 84 58-149 3-89 (250)
436 TIGR01763 MalateDH_bact malate 91.3 1.1 2.3E-05 39.5 7.9 84 59-147 2-117 (305)
437 PRK07478 short chain dehydroge 91.2 2.8 6.1E-05 34.2 9.9 83 59-150 7-93 (254)
438 TIGR01369 CPSaseII_lrg carbamo 91.2 1.4 3.1E-05 45.0 9.7 102 42-143 538-657 (1050)
439 PRK07877 hypothetical protein; 91.2 0.71 1.5E-05 45.7 7.3 93 58-154 107-211 (722)
440 PRK08261 fabG 3-ketoacyl-(acyl 91.2 2 4.3E-05 38.8 9.7 83 58-151 210-295 (450)
441 PRK08643 acetoin reductase; Va 91.2 1.1 2.3E-05 36.7 7.3 84 59-150 3-89 (256)
442 PRK05086 malate dehydrogenase; 91.2 1.3 2.7E-05 39.2 8.2 89 59-149 1-119 (312)
443 PRK09072 short chain dehydroge 91.1 2 4.4E-05 35.4 9.0 85 58-151 5-91 (263)
444 COG2099 CobK Precorrin-6x redu 91.1 1.6 3.5E-05 38.3 8.7 107 58-165 2-127 (257)
445 PF08484 Methyltransf_14: C-me 91.1 0.52 1.1E-05 38.0 5.3 86 56-145 66-158 (160)
446 PRK06924 short chain dehydroge 91.1 1.6 3.5E-05 35.4 8.3 69 59-138 2-73 (251)
447 PRK07831 short chain dehydroge 91.1 4.4 9.6E-05 33.3 11.0 88 57-150 16-107 (262)
448 PRK06194 hypothetical protein; 91.1 0.97 2.1E-05 37.7 7.2 83 58-150 6-93 (287)
449 PRK05717 oxidoreductase; Valid 91.1 2.2 4.8E-05 35.0 9.2 81 59-150 11-94 (255)
450 PRK07035 short chain dehydroge 91.1 0.96 2.1E-05 36.9 7.0 82 59-148 9-94 (252)
451 PF00106 adh_short: short chai 91.1 2.3 5E-05 32.2 8.7 88 60-151 2-92 (167)
452 PRK07578 short chain dehydroge 91.0 2.3 5E-05 33.6 9.0 30 60-91 2-31 (199)
453 PRK05866 short chain dehydroge 91.0 0.85 1.8E-05 39.0 6.8 84 59-151 41-128 (293)
454 PRK05650 short chain dehydroge 90.9 1.7 3.8E-05 36.0 8.5 82 60-150 2-87 (270)
455 PRK14106 murD UDP-N-acetylmura 90.9 0.29 6.3E-06 44.2 4.0 81 58-142 5-95 (450)
456 PTZ00082 L-lactate dehydrogena 90.8 1.8 3.9E-05 38.4 8.9 86 59-149 7-129 (321)
457 PRK12823 benD 1,6-dihydroxycyc 90.8 4 8.7E-05 33.3 10.5 80 59-149 9-93 (260)
458 PRK06200 2,3-dihydroxy-2,3-dih 90.8 1.4 2.9E-05 36.4 7.7 80 58-150 6-90 (263)
459 PRK09496 trkA potassium transp 90.8 0.98 2.1E-05 40.6 7.3 101 58-161 231-342 (453)
460 PRK08277 D-mannonate oxidoredu 90.7 2.5 5.5E-05 35.1 9.3 82 58-149 10-96 (278)
461 PRK01710 murD UDP-N-acetylmura 90.7 0.56 1.2E-05 43.0 5.7 80 58-142 14-104 (458)
462 PRK06914 short chain dehydroge 90.7 2.4 5.3E-05 35.1 9.2 85 59-150 4-91 (280)
463 PF02571 CbiJ: Precorrin-6x re 90.7 0.61 1.3E-05 40.2 5.6 83 59-143 1-97 (249)
464 PF00670 AdoHcyase_NAD: S-aden 90.6 0.075 1.6E-06 43.5 -0.0 97 59-162 24-125 (162)
465 PRK12935 acetoacetyl-CoA reduc 90.6 1.7 3.7E-05 35.2 8.0 84 58-150 6-94 (247)
466 PLN00106 malate dehydrogenase 90.6 1.7 3.7E-05 38.9 8.6 90 57-149 17-136 (323)
467 PRK05876 short chain dehydroge 90.5 2 4.3E-05 36.2 8.6 82 59-150 7-93 (275)
468 PRK07774 short chain dehydroge 90.5 2.1 4.5E-05 34.6 8.4 84 58-150 6-93 (250)
469 PRK05875 short chain dehydroge 90.5 0.84 1.8E-05 37.8 6.2 86 58-149 7-95 (276)
470 PRK07102 short chain dehydroge 90.4 1.1 2.3E-05 36.5 6.7 84 59-150 2-86 (243)
471 PRK06223 malate dehydrogenase; 90.4 1.1 2.4E-05 38.7 7.1 87 58-148 2-119 (307)
472 PRK08220 2,3-dihydroxybenzoate 90.4 3.5 7.5E-05 33.4 9.6 76 58-150 8-86 (252)
473 PRK00045 hemA glutamyl-tRNA re 90.3 0.2 4.4E-06 45.8 2.5 69 57-128 181-255 (423)
474 PRK07453 protochlorophyllide o 90.3 2.9 6.3E-05 35.9 9.5 84 58-150 6-93 (322)
475 TIGR01470 cysG_Nterm siroheme 90.3 0.98 2.1E-05 37.6 6.4 80 58-142 9-97 (205)
476 PRK08945 putative oxoacyl-(acy 90.3 3.5 7.7E-05 33.5 9.6 87 57-150 11-102 (247)
477 PRK08862 short chain dehydroge 90.2 1.4 3E-05 36.3 7.3 83 58-147 5-91 (227)
478 PRK07806 short chain dehydroge 90.2 2.3 5E-05 34.5 8.5 83 59-150 7-94 (248)
479 PF13241 NAD_binding_7: Putati 90.2 0.19 4.1E-06 37.1 1.9 81 57-143 6-89 (103)
480 COG1087 GalE UDP-glucose 4-epi 90.2 0.92 2E-05 41.0 6.5 86 59-145 1-115 (329)
481 PRK07576 short chain dehydroge 90.0 1.7 3.6E-05 36.2 7.6 82 58-146 9-93 (264)
482 PRK00421 murC UDP-N-acetylmura 90.0 0.53 1.1E-05 43.1 5.0 84 55-142 4-93 (461)
483 COG0373 HemA Glutamyl-tRNA red 90.0 0.55 1.2E-05 43.6 5.1 79 57-138 177-264 (414)
484 PRK13394 3-hydroxybutyrate deh 89.9 3.4 7.3E-05 33.6 9.2 83 58-150 7-94 (262)
485 COG1004 Ugd Predicted UDP-gluc 89.9 0.42 9E-06 44.5 4.2 97 59-165 1-106 (414)
486 cd01490 Ube1_repeat2 Ubiquitin 89.9 1.6 3.4E-05 40.9 8.0 88 60-150 1-134 (435)
487 KOG1014 17 beta-hydroxysteroid 89.8 0.76 1.7E-05 41.3 5.7 85 58-152 50-138 (312)
488 PF02844 GARS_N: Phosphoribosy 89.8 0.55 1.2E-05 35.5 4.1 80 59-143 1-90 (100)
489 PRK09730 putative NAD(P)-bindi 89.8 4.1 8.8E-05 32.7 9.5 84 59-150 2-89 (247)
490 PRK07832 short chain dehydroge 89.7 2.1 4.5E-05 35.6 8.0 82 60-150 2-88 (272)
491 COG0604 Qor NADPH:quinone redu 89.7 1.6 3.4E-05 38.7 7.5 96 54-149 139-245 (326)
492 KOG0069 Glyoxylate/hydroxypyru 89.6 2.2 4.7E-05 38.7 8.5 107 58-169 162-274 (336)
493 KOG4039 Serine/threonine kinas 89.6 3.1 6.8E-05 35.5 8.8 90 57-147 17-130 (238)
494 TIGR01408 Ube1 ubiquitin-activ 89.6 0.91 2E-05 46.5 6.7 36 58-94 24-59 (1008)
495 PRK07067 sorbitol dehydrogenas 89.5 1.7 3.7E-05 35.6 7.2 82 58-150 6-90 (257)
496 PRK14030 glutamate dehydrogena 89.5 0.86 1.9E-05 42.7 6.0 99 58-159 228-356 (445)
497 cd05291 HicDH_like L-2-hydroxy 89.5 1.2 2.5E-05 38.9 6.6 85 60-148 2-117 (306)
498 COG1028 FabG Dehydrogenases wi 89.5 2.6 5.7E-05 34.2 8.3 104 57-169 4-119 (251)
499 PRK06079 enoyl-(acyl carrier p 89.5 2.5 5.5E-05 34.9 8.3 81 59-150 8-93 (252)
500 TIGR00877 purD phosphoribosyla 89.5 1 2.2E-05 40.5 6.3 84 59-143 1-92 (423)
No 1
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=99.96 E-value=8.2e-29 Score=218.61 Aligned_cols=118 Identities=73% Similarity=1.103 Sum_probs=113.5
Q ss_pred cCCCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEc--CccccccHHHHhhccCCcEEEEee
Q 030220 46 AAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL--GLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 46 ~~~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~--GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
|++|++++++|+++||+|+|+||+.|+.|++.|++||++|||||+|+++|++++ |+|||++++|+++++++|++++||
T Consensus 17 ~~~~~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 17 SSTSAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEAKKATGADASVIYV 96 (317)
T ss_pred HhccCccEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHHhcccCCCEEEEec
Confidence 569999999999999999999999999999999999999999999999999998 999999999999877799999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhh
Q 030220 124 PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 124 Pp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak 163 (181)
|+.++.++++||+++||+.+|++|+||+++|+.+++++++
T Consensus 97 Pa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~ 136 (317)
T PTZ00187 97 PPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALL 136 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHh
Confidence 9999999999999999999999999999999999987764
No 2
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=99.96 E-value=4e-29 Score=214.28 Aligned_cols=130 Identities=65% Similarity=0.981 Sum_probs=122.8
Q ss_pred ccccccccccccccCCCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh
Q 030220 33 AAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112 (181)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~ 112 (181)
+++....|.+.|.|++|+.++++++++||+++|+|||.|.+|.+.+++||+++|+|++|++.|++++|+|||.+++|+.+
T Consensus 13 ~~~~~~~~~~~s~y~~T~~nl~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~VgG~~pkK~Gt~HLG~PVF~sV~eA~~ 92 (329)
T KOG1255|consen 13 ALSLGILRVFKSLYNKTISNLKINKDTKVICQGFTGKQGTFHSQQALEYGTKVVGGVNPKKGGTTHLGLPVFNSVAEAKK 92 (329)
T ss_pred hcCcchhhhhcchhhhhhhceeecCCceEEEecccCCccceeHHHHHHhCCceeeccCCCcCcccccCchhhhhHHHHHH
Confidence 44455556668889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 113 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 113 ~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
+.++|..++||||..|..+++|++|+.|++|||+|||+|.||+.++..+.
T Consensus 93 ~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L 142 (329)
T KOG1255|consen 93 ETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHAL 142 (329)
T ss_pred hhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765
No 3
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=99.94 E-value=7e-27 Score=203.01 Aligned_cols=116 Identities=61% Similarity=0.899 Sum_probs=112.2
Q ss_pred CeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 51 ~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
|++++++++||+|+|+||++|++|.+.+++||+++|++|+|+++|+++.|+|||++++|+++++++|+.++||||.+|.+
T Consensus 1 m~il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aad 80 (293)
T COG0074 1 MSILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAAD 80 (293)
T ss_pred CceeecCCCeEEEeccccccchHHHHHHHHhCCceeecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
++.||+++|+++|+|||||+|++|+.++++.+++..
T Consensus 81 ai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g 116 (293)
T COG0074 81 AILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG 116 (293)
T ss_pred HHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999997643
No 4
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=99.90 E-value=3e-23 Score=182.09 Aligned_cols=118 Identities=88% Similarity=1.254 Sum_probs=106.8
Q ss_pred CCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH
Q 030220 48 ASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 48 ~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+.+|.+++++++||+|+|+||+.|+.+++.|++||++|||||+|++.+.++.|+|+|++++|+++..++|++|+++|++.
T Consensus 2 ~~~~~~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~ 81 (300)
T PLN00125 2 SPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPF 81 (300)
T ss_pred CCCceEEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHH
Confidence 35678999999999999999999999999999999999999999987778999999999999997445899999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH-HHHhhhh
Q 030220 128 AAAAIMEAMEAELDLVVCITEGIPQHDMVIN-FTRVNIL 165 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l-~~~ak~i 165 (181)
+.+++++|.++|++.++++|+||++.+++++ .+++++-
T Consensus 82 v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~ 120 (300)
T PLN00125 82 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQS 120 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhc
Confidence 9999999999999999999999999985444 4446654
No 5
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=99.87 E-value=9.2e-22 Score=171.62 Aligned_cols=115 Identities=61% Similarity=0.954 Sum_probs=106.9
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+++++++||+|+|+||++|+.+.+.+..|||++|++|+|++.+.++.|+|+|++++|+++..+||++|+++|++.+.+++
T Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l 80 (286)
T TIGR01019 1 ILLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAI 80 (286)
T ss_pred CeecCCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHH
Confidence 36889999999999999999999999999999999999997667899999999999999843489999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++|.++|++.++++|+||++++..+|.+.|++-.+
T Consensus 81 ~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi 115 (286)
T TIGR01019 81 FEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT 115 (286)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999987543
No 6
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.86 E-value=8.4e-22 Score=151.49 Aligned_cols=111 Identities=25% Similarity=0.339 Sum_probs=94.0
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCC---CCeE--------EcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKK---GGTE--------HLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~---~G~e--------i~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+||+|+|++||||+.+.+.+.+ .|+++++.+++.. .|++ ..|+|++++++++.+ ++|++|||+.|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~--~~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE--EADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT--H-SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcc--cCCEEEEcCChH
Confidence 4899999999999999999999 6999999988765 2332 258999999999998 499999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc-hhh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 172 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~-~~~ 172 (181)
.+.+++++|+++|++.|++ |||++++|+.+|+++++++||-. .||
T Consensus 79 ~~~~~~~~~~~~g~~~ViG-TTG~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIG-TTGFSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE--SSSHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred HhHHHHHHHHhCCCCEEEE-CCCCCHHHHHHHHHHhccCCEEEeCCC
Confidence 9999999999999999999 99999999999999999999854 344
No 7
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=99.84 E-value=2e-20 Score=163.59 Aligned_cols=117 Identities=62% Similarity=0.966 Sum_probs=106.4
Q ss_pred CeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 51 ~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
|++++++++||+|+|+||++|+.+.+++.++|++.+.+|||+..+.++.|+|+|++++|+++.+++|++|+++|++.+.+
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~ 80 (291)
T PRK05678 1 MSILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAAD 80 (291)
T ss_pred CceEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHH
Confidence 35789999999999999999999999999999988889999953357999999999999998323999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++++|.++|+|.++++|+||+.+|..+|.++|++-.+
T Consensus 81 ~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gi 117 (291)
T PRK05678 81 AILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKT 117 (291)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999988999999987543
No 8
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=99.83 E-value=2.3e-20 Score=137.52 Aligned_cols=93 Identities=31% Similarity=0.363 Sum_probs=79.9
Q ss_pred cCCceEEEEccCCCCcchh-hHHHHHhCCeE--eeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFH-TEQAIEYGTKM--VGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~-~k~~~~~g~~I--VagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
|+++||+|+|+ |++|+.. +..+.++|+++ ++++||++.|+++.|+|||++++++.+.+++|++|+++|++.|++++
T Consensus 1 nk~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~ 79 (96)
T PF02629_consen 1 NKKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVA 79 (96)
T ss_dssp CTTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHH
T ss_pred CCCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHH
Confidence 57899999999 9999944 44555567664 44799999999999999999999998866799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCC
Q 030220 133 MEAMEAELDLVVCITEG 149 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG 149 (181)
++++++|||.||+||+|
T Consensus 80 ~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 80 DELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHHHHTT-SEEEEESSS
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999999986
No 9
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=99.79 E-value=4.7e-19 Score=153.16 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=98.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCC-----------CeEEcCccccccHHHHhhccCCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-----------GTEHLGLPVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~-----------G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
++||+|+|++||||+.+++.+.+. ++++++.++.... |....|+||++++..... ++||+|||+.|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~--~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA--DADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhccc--CCCEEEECCCc
Confidence 578999999999999999999985 8999999885532 112468999999766655 89999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc-hhh
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 172 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~-~~~ 172 (181)
+.+.+++++|+++|+++||+ ||||+++|.++|+++++++||=+ .||
T Consensus 80 ~~~~~~l~~~~~~~~~lVIG-TTGf~~e~~~~l~~~a~~v~vv~a~Nf 126 (266)
T COG0289 80 EATLENLEFALEHGKPLVIG-TTGFTEEQLEKLREAAEKVPVVIAPNF 126 (266)
T ss_pred hhhHHHHHHHHHcCCCeEEE-CCCCCHHHHHHHHHHHhhCCEEEeccc
Confidence 99999999999999999999 99999999999999999998754 344
No 10
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=99.75 E-value=9.7e-19 Score=145.39 Aligned_cols=109 Identities=23% Similarity=0.351 Sum_probs=96.9
Q ss_pred eeeccCCceEEEEccCCCCcc--hhhHHHHHhCCeEeee--cCCCCCCeEEcCccccc--cHHHHhhccCCcEEEEeeCh
Q 030220 52 AVFVDKNTRVICQGITGKNGT--FHTEQAIEYGTKMVGG--VTPKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 52 ~~~~~~~~rViVvGatGkmG~--~~~k~~~~~g~~IVag--VdP~~~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp 125 (181)
.+..+++++|+++|+ |++|+ .+|+.+.++|++|++. +||.+.|+++.++|||+ ++++.++++++|++|++||+
T Consensus 78 ~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 78 LLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred HhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 468899999999999 99999 6667788899999985 77999999999999999 69999998899999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCIT-------EGIPQHDMVINFTR 161 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iT-------tG~~~ed~~~l~~~ 161 (181)
+.||++++.++++||++||+|| +|+.+|++..-.++
T Consensus 157 ~~AQ~vad~Lv~aGVkGIlNFtPv~l~~pe~V~V~~iDLt~eL 199 (211)
T COG2344 157 EHAQEVADRLVKAGVKGILNFTPVRLQVPEGVIVENIDLTAEL 199 (211)
T ss_pred HHHHHHHHHHHHcCCceEEeccceEecCCCCcEEEEeehHHHH
Confidence 9999999999999999999999 77777776544443
No 11
>PLN02775 Probable dihydrodipicolinate reductase
Probab=99.74 E-value=1.2e-17 Score=145.95 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=98.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE----Ec--Ccccc--ccHHHHhhcc---CCc-EEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE----HL--GLPVF--NSVAEAKAET---KAN-ASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e----i~--GvPVy--~sl~e~~~~~---~~D-VaIdfVPp 125 (181)
.+||+|.|++||||+++++.+.+.|+++|+.+|++..|++ +. ++|+| +++++++.+. .+| |+|||+.|
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P 90 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLP 90 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCCh
Confidence 3589999999999999999988899999999998776643 32 78999 8999998655 799 99999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc-hhh
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 172 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~-~~~ 172 (181)
+.+.++++.|+++|++.|++ |||++++|+.++.+ ++.+|+-. .||
T Consensus 91 ~a~~~~~~~~~~~g~~~VvG-TTG~~~e~l~~~~~-~~~i~vv~apNf 136 (286)
T PLN02775 91 DAVNDNAELYCKNGLPFVMG-TTGGDRDRLLKDVE-ESGVYAVIAPQM 136 (286)
T ss_pred HHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHh-cCCccEEEECcc
Confidence 99999999999999999999 99999999988877 56777654 344
No 12
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.71 E-value=6.5e-17 Score=138.87 Aligned_cols=111 Identities=22% Similarity=0.308 Sum_probs=95.8
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCC-C--CCCeE---E-----cCccccccHHHHhhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTP-K--KGGTE---H-----LGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP-~--~~G~e---i-----~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+||+|+|++|+||+.+++.+.+ .++++++.+|+ . ..+++ + .|+++|++++++. .++|++|||+||+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~--~~~DvVIdfT~p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVE--TDPDVLIDFTTPE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhc--CCCCEEEECCChH
Confidence 6899999889999999999887 59999999983 2 11211 1 3689999999983 3799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh--hchhc-hhh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI--LLVAF-LNF 172 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~--ipv~~-~~~ 172 (181)
.+.+.++.|+++|++.|++ |+|++++|..+|.++|++ +|+-. .||
T Consensus 80 ~~~~~~~~al~~g~~vVig-ttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVG-TTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 9999999999999999999 889999999999999999 88876 555
No 13
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=99.69 E-value=9.6e-17 Score=139.68 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=95.3
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeE---Ec--Cccc------cccHHHHhhccCCc-EEEEeeChH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTE---HL--GLPV------FNSVAEAKAETKAN-ASVIYVPPP 126 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~e---i~--GvPV------y~sl~e~~~~~~~D-VaIdfVPp~ 126 (181)
||+|.|++||||+++++.+.+.|+++|+. +++...+++ +. ++|| |.+++++.+ ..+| |+|||+.|+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~-~~~d~VvIDFT~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFA-KYPELICIDYTHPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHh-hcCCEEEEECCChH
Confidence 79999999999999999988899999997 887654422 22 7899 889999885 3499 999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh-chhh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA-FLNF 172 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~-~~~~ 172 (181)
.+.++++.|+++|++.|++ |||++++|+.+|.+.++ +|+- +.||
T Consensus 81 ~~~~n~~~~~~~gv~~ViG-TTG~~~~~~~~l~~~~~-i~~l~apNf 125 (275)
T TIGR02130 81 AVNDNAAFYGKHGIPFVMG-TTGGDREALAKLVADAK-HPAVIAPNM 125 (275)
T ss_pred HHHHHHHHHHHCCCCEEEc-CCCCCHHHHHHHHHhcC-CCEEEECcc
Confidence 9999999999999999999 99999999999998876 6653 4555
No 14
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.67 E-value=4e-16 Score=133.12 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=95.1
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+||+|+|++|+||+.+++.+.+ .++++++.+|+..... +..|+++|++++++++ ++|++|||+||+...++++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~--~~DvVid~t~p~~~~~~~~~ 79 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLA--DADVLIDFTTPEATLENLEF 79 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhcc--CCCEEEECCCHHHHHHHHHH
Confidence 6899999999999999998887 4899999888654221 1246889999999886 79999999999999999999
Q ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 135 AMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
|+++|++.|++ |||++++|..+|.++++++||-.
T Consensus 80 al~~G~~vvig-ttG~s~~~~~~l~~aa~~~~v~~ 113 (257)
T PRK00048 80 ALEHGKPLVIG-TTGFTEEQLAELEEAAKKIPVVI 113 (257)
T ss_pred HHHcCCCEEEE-CCCCCHHHHHHHHHHhcCCCEEE
Confidence 99999999999 99999999999999989998764
No 15
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=99.61 E-value=3e-15 Score=136.94 Aligned_cols=109 Identities=26% Similarity=0.268 Sum_probs=95.5
Q ss_pred eeccCCceEEEEccC---CCCcchhhHHHHHhCCe-EeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHH
Q 030220 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 53 ~~~~~~~rViVvGat---GkmG~~~~k~~~~~g~~-IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
.+|+| .+|+|+|++ |++|..+.++++++||+ -|.+|||+. .++.|+|+|++++|+++ .+|++++++|++.+
T Consensus 3 ~l~~p-~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~--~~i~G~~~~~sl~~lp~--~~Dlavi~vp~~~~ 77 (447)
T TIGR02717 3 HLFNP-KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKA--GEILGVKAYPSVLEIPD--PVDLAVIVVPAKYV 77 (447)
T ss_pred cccCC-CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCC--CccCCccccCCHHHCCC--CCCEEEEecCHHHH
Confidence 46777 459999999 77888999999998885 556999997 46999999999999977 89999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHH------HHHHHHHhhhhc
Q 030220 129 AAAIMEAMEAELDLVVCITEGIPQHD------MVINFTRVNILL 166 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~~~ed------~~~l~~~ak~ip 166 (181)
.+++++|.+.|++.+|++|+||++.+ ..+|.+++++-.
T Consensus 78 ~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~g 121 (447)
T TIGR02717 78 PQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYG 121 (447)
T ss_pred HHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcC
Confidence 99999999999999999999999853 478888887643
No 16
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=99.52 E-value=6.4e-14 Score=111.13 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=95.8
Q ss_pred eccCCceEEEEccCCCCcc---hhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 54 FVDKNTRVICQGITGKNGT---FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~---~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
.++..++|+|+|+|.+-.+ .+.+.+.+.|++|+ +|||+..|++++|.++|+|++|+++ ++|++.+|.+++++.+
T Consensus 12 iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi-PVNP~~~~~eiLG~k~y~sL~dIpe--~IDiVdvFR~~e~~~~ 88 (140)
T COG1832 12 ILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI-PVNPKLAGEEILGEKVYPSLADIPE--PIDIVDVFRRSEAAPE 88 (140)
T ss_pred HHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE-eeCcccchHHhcCchhhhcHHhCCC--CCcEEEEecChhhhHH
Confidence 4556678999999966555 78888999999999 9999988889999999999999987 8999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+++++++.|++.+|. =.|+.-++..+..+.+..
T Consensus 89 i~~eal~~~~kv~W~-QlGi~n~ea~~~~~~aG~ 121 (140)
T COG1832 89 VAREALEKGAKVVWL-QLGIRNEEAAEKARDAGL 121 (140)
T ss_pred HHHHHHhhCCCeEEE-ecCcCCHHHHHHHHHhCc
Confidence 999999999999998 899988888887777655
No 17
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=99.52 E-value=5.6e-14 Score=107.33 Aligned_cols=99 Identities=21% Similarity=0.205 Sum_probs=73.9
Q ss_pred ceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
.+|+|+|++ +++|..+++.+.+.|++++ +|||+. +++.|+++|++++|.+. ++|++++++|++.+.+.+++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~-~Vnp~~--~~i~G~~~y~sl~e~p~--~iDlavv~~~~~~~~~~v~~~ 75 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVY-PVNPKG--GEILGIKCYPSLAEIPE--PIDLAVVCVPPDKVPEIVDEA 75 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEE-EESTTC--SEETTEE-BSSGGGCSS--T-SEEEE-S-HHHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEE-EECCCc--eEECcEEeeccccCCCC--CCCEEEEEcCHHHHHHHHHHH
Confidence 369999999 7778899999999999877 899998 57999999999999544 899999999999999999999
Q ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 136 MEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 136 ie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.+.|++.+|.++. ++..++.+++++-.
T Consensus 76 ~~~g~~~v~~~~g----~~~~~~~~~a~~~g 102 (116)
T PF13380_consen 76 AALGVKAVWLQPG----AESEELIEAAREAG 102 (116)
T ss_dssp HHHT-SEEEE-TT----S--HHHHHHHHHTT
T ss_pred HHcCCCEEEEEcc----hHHHHHHHHHHHcC
Confidence 9999999999444 44455555555533
No 18
>PLN02522 ATP citrate (pro-S)-lyase
Probab=99.50 E-value=1.8e-13 Score=130.06 Aligned_cols=110 Identities=20% Similarity=0.328 Sum_probs=93.9
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCe-------EeeecCCCCC-------CeEEcCccccccHHHHhhcc-CCc
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTK-------MVGGVTPKKG-------GTEHLGLPVFNSVAEAKAET-KAN 117 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~-------IVagVdP~~~-------G~ei~GvPVy~sl~e~~~~~-~~D 117 (181)
.+|+++++.++.| |....++.|+++||- +.+.|.|..+ |+++.|+|||++++|+.+++ ++|
T Consensus 5 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~~ 80 (608)
T PLN02522 5 QLFSRTTQALFYN----YKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTAD 80 (608)
T ss_pred eeecCCceeEEEc----CcHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCCc
Confidence 5789999999999 577888888887642 4555788652 34567999999999999887 899
Q ss_pred EEEEeeChHHHHHHHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 118 ASVIYVPPPFAAAAIMEAME-AELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie-~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
+.|+|+||..|.+.+.|+++ +||+.+|++|+||++.|+.+|.+.|++-.
T Consensus 81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g 130 (608)
T PLN02522 81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANN 130 (608)
T ss_pred EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcC
Confidence 99999999999998888887 59999999999999999999999998743
No 19
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.21 E-value=2.9e-11 Score=89.71 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=89.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCCe----EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G~----ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
.||.|+|+ |.+|+.+.+.+.+. ++++++.+|+..... +-.|+|+|++++++++..++|++++++|+..-.+.+
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~ 79 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA 79 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH
Confidence 37999999 99999999877774 788999888875321 236899999999999877899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.+|+++|++.++==--..+.+|..+|.+++++--
T Consensus 80 ~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 80 KKALEAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp HHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 9999999944443224679999999999997654
No 20
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=99.09 E-value=2.2e-10 Score=95.03 Aligned_cols=94 Identities=23% Similarity=0.322 Sum_probs=78.4
Q ss_pred eeccCCceEEEEccCCCCcchhhHHH--HHhCCeEeeecC--CCCCCeEEcCccccc--cHHHHhhccCCcEEEEeeChH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVGGVT--PKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~--~~~g~~IVagVd--P~~~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+..+..++|+|+|+ |++|+.+++.. .+.|++++|.+| |.+.+..+.|+||+. +++++++++++|++++++|..
T Consensus 79 l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 79 LGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred hCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 44556789999999 99999888753 235999998766 555565677888875 688888777899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeC
Q 030220 127 FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iT 147 (181)
..+++++.+.++|++.|++|+
T Consensus 158 ~~~~i~~~l~~~Gi~~il~~~ 178 (213)
T PRK05472 158 AAQEVADRLVEAGIKGILNFA 178 (213)
T ss_pred hHHHHHHHHHHcCCCEEeecC
Confidence 999999999999999999985
No 21
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.06 E-value=5.3e-10 Score=96.03 Aligned_cols=106 Identities=13% Similarity=0.054 Sum_probs=84.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC----eEE-cCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG----TEH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G----~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
++||.|+|+ |+||+.+++.+.+. ++++++.+++.... +.+ .++++|++++++ + .++|++++++|+..+.+.
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-P-QRPDLVVECAGHAALKEH 77 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-c-cCCCEEEECCCHHHHHHH
Confidence 368999999 99999999988885 88888876543221 111 268999999998 3 479999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCC-CCHHH-HHHHHHHhhhhch
Q 030220 132 IMEAMEAELDLVVCITEG-IPQHD-MVINFTRVNILLV 167 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG-~~~ed-~~~l~~~ak~ipv 167 (181)
+.+++++|++.++. +.| +..++ ..+|.++|++-.+
T Consensus 78 ~~~aL~aGk~Vvi~-s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 78 VVPILKAGIDCAVI-SVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred HHHHHHcCCCEEEe-ChHHhcCHHHHHHHHHHHHHCCC
Confidence 99999999999887 666 66444 5788888877544
No 22
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=98.95 E-value=2.1e-09 Score=102.45 Aligned_cols=97 Identities=23% Similarity=0.339 Sum_probs=84.2
Q ss_pred eeccCCceEEEEccCCC---CcchhhHHHHHhCCe-EeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHH
Q 030220 53 VFVDKNTRVICQGITGK---NGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 53 ~~~~~~~rViVvGatGk---mG~~~~k~~~~~g~~-IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
.++.|+. |+|+|++++ .|+.+.++++++| + -+.+|||... ++.|+++|+++.+++. .+|++++.||+..+
T Consensus 6 ~~~~p~s-vavigas~~~~~vg~~i~~nL~~~g-~g~i~PVnp~~~--~v~G~~ay~s~~~lp~--~~dlav~~v~~~~~ 79 (598)
T COG1042 6 RLFAPKS-IAVIGASERPGKLGYEILRNLLEYG-QGKIYPVNPKYD--EVLGVKAYTSVADLPD--APDLAVIVVPAKVV 79 (598)
T ss_pred hhhCCce-EEEeeccCCcchhHHHHHHHHHhcC-CCceEecCcccc--ccccccccchHhhCCC--CCCeeEEEechhhh
Confidence 4677755 999999965 5557888888887 4 4559999984 6999999999999988 89999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030220 129 AAAIMEAMEAELDLVVCITEGIPQHDM 155 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~~~ed~ 155 (181)
.+++++|.+.|++.+|+++.||.+--.
T Consensus 80 ~~i~~~~~~kGv~~~i~is~gf~e~~~ 106 (598)
T COG1042 80 PEIVHELGEKGVKGAIVISAGFREAGE 106 (598)
T ss_pred HHHHHHhhccCCceEEEechhhhHHhh
Confidence 999999999999999999999998654
No 23
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.92 E-value=3.4e-09 Score=90.90 Aligned_cols=104 Identities=10% Similarity=0.068 Sum_probs=85.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+||.|+|+ |+||+.+.+.+.+. ++++++.+|+.... + +..|.++|.++++++. ++|++++++|++...+.+
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~~ 78 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEVV 78 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHHH
Confidence 68999999 99999999988874 68888888876421 1 1246789999999885 899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCC--CHHHHHHHHHHhhhhc
Q 030220 133 MEAMEAELDLVVCITEGI--PQHDMVINFTRVNILL 166 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~--~~ed~~~l~~~ak~ip 166 (181)
.+++++|...++. +.|- ..+...+|.++|++-.
T Consensus 79 ~~al~~Gk~Vvv~-s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 79 PKSLENGKDVIIM-SVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred HHHHHcCCCEEEE-chHHhcCHHHHHHHHHHHHHcC
Confidence 9999999887765 6653 6777889999997744
No 24
>PRK11579 putative oxidoreductase; Provisional
Probab=98.91 E-value=7.4e-09 Score=90.92 Aligned_cols=109 Identities=15% Similarity=0.046 Sum_probs=87.8
Q ss_pred CCceEEEEccCCCCcc-hhhHHHHH-hCCeEeeecCCCCC--CeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 57 KNTRVICQGITGKNGT-FHTEQAIE-YGTKMVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~-~~~k~~~~-~g~~IVagVdP~~~--G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+..||.|+|+ |.+|+ .+.+.+.. .++++++..|+... .....+.++|.+++|+++..++|++++++|+....+.+
T Consensus 3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~ 81 (346)
T PRK11579 3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA 81 (346)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 3479999999 99998 57777766 48999988776532 11234678999999999866899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.+|+++|++.++==-=..+.+|..+|.++|++-.
T Consensus 82 ~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g 115 (346)
T PRK11579 82 KAALEAGKHVVVDKPFTVTLSQARELDALAKSAG 115 (346)
T ss_pred HHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999876654334578999999999997643
No 25
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.72 E-value=2.9e-08 Score=85.29 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=86.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-C-CeEeeecCCCCCC-e---EEcCcc-ccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-G-TKMVGGVTPKKGG-T---EHLGLP-VFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g-~~IVagVdP~~~G-~---ei~GvP-Vy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
++.||.|+|+.|-+++.+...+.+. + +++++.+|++... + +-.|++ +|.+++++++..++|++++.+|+..-.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 4689999999445556788888885 4 6999987766532 1 225775 999999999877799999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
+.+..|+++|++.++==-=..+.+|.++|.++|++-
T Consensus 82 e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 82 ELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 999999999997663111237899999999999775
No 26
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.70 E-value=5.8e-08 Score=83.87 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=80.6
Q ss_pred CceEEEEccCCCCcchhhHHHHH--hCCeEeeecCCCCCC-eE---EcC-ccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGG-TE---HLG-LPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~--~g~~IVagVdP~~~G-~e---i~G-vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
..||.|+|+ |++|+.+++.+.+ .++++++..|+.... ++ ..| .++|.+++++.+ ++|++++++|.+...+
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~--~~D~Vvi~tp~~~h~e 82 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADIVVEAAPASVLRA 82 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCEEEECCCcHHHHH
Confidence 378999999 9999999998886 388888777765321 11 124 468899999986 7999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.+..++++|.+.++. +.| ...+..+|.+++++-
T Consensus 83 ~~~~aL~aGk~Vi~~-s~g-al~~~~~L~~~A~~~ 115 (271)
T PRK13302 83 IVEPVLAAGKKAIVL-SVG-ALLRNEDLIDLARQN 115 (271)
T ss_pred HHHHHHHcCCcEEEe-cch-hHHhHHHHHHHHHHc
Confidence 999999999877664 544 234677888888663
No 27
>PRK10206 putative oxidoreductase; Provisional
Probab=98.68 E-value=1e-07 Score=84.36 Aligned_cols=107 Identities=11% Similarity=0.008 Sum_probs=83.6
Q ss_pred ceEEEEccCCCCcc-hhhHHHHH--hCCeEeeecCCCCCC----eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGT-FHTEQAIE--YGTKMVGGVTPKKGG----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~-~~~k~~~~--~g~~IVagVdP~~~G----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.||.|+|+ |.+++ .+.+.+.. .++++++..|+...- .+..++++|++++|+++..++|++++++|+..-.+.
T Consensus 2 irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 2 INCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred eEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 58999999 98764 67776644 379999877764311 123458899999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
+.+|+++|++.++==-=..+.+|..+|.++|++-.
T Consensus 81 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~ 115 (344)
T PRK10206 81 AKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKG 115 (344)
T ss_pred HHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhC
Confidence 99999999765542223578999999999997644
No 28
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.64 E-value=8.6e-08 Score=85.54 Aligned_cols=104 Identities=10% Similarity=0.066 Sum_probs=82.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccc--cHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
..||+|+|+ |++|+.+.+.+.+. ++++|+.+++...+.--.++++|. +.++... ++|++++++|...-.+.+..
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~--~iDVViIctPs~th~~~~~~ 79 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLD--DVDVLILCMGSATDIPEQAP 79 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhcc--CCCEEEEcCCCccCHHHHHH
Confidence 479999999 99999999988874 999999878663111012355555 5555544 79999999999999999999
Q ss_pred HHHcCCCEEEEeCCCCC-HHHHHHHHHHhhh
Q 030220 135 AMEAELDLVVCITEGIP-QHDMVINFTRVNI 164 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~-~ed~~~l~~~ak~ 164 (181)
++++|+..|..+-.+.. .+..++|.++|++
T Consensus 80 ~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~ 110 (324)
T TIGR01921 80 YFAQFANTVDSFDNHRDIPRHRQVMDAAAKA 110 (324)
T ss_pred HHHcCCCEEECCCcccCCHHHHHHHHHHHHH
Confidence 99999999988766664 4778899999986
No 29
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.56 E-value=1.6e-07 Score=83.75 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=69.0
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCC---------CeE-----------E--cCccccccHHHHhhcc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKG---------GTE-----------H--LGLPVFNSVAEAKAET 114 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~---------G~e-----------i--~GvPVy~sl~e~~~~~ 114 (181)
+.||+|.|+ |+||+.+++.+.+ .++++++..|+... |-. . .+++++.+++++.+
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~-- 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE-- 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc--
Confidence 368999999 9999999998887 49999998774321 100 1 26888888888876
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 115 KANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 115 ~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++|++++|+|+....+.++.++++|++.|+.
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~ 108 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYEKAGVKAIFQ 108 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHHHCCCEEEEc
Confidence 7999999999999999999999999666655
No 30
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.46 E-value=5.3e-07 Score=80.16 Aligned_cols=109 Identities=18% Similarity=0.064 Sum_probs=80.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHh----------CCeEeeecCCCC-----CCeE----------EcCcccc------cc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY----------GTKMVGGVTPKK-----GGTE----------HLGLPVF------NS 106 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~----------g~~IVagVdP~~-----~G~e----------i~GvPVy------~s 106 (181)
..||+|+|+ |++|+.+++.+.+. ++++++..|+.. .|.. ...+..| .+
T Consensus 2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 368999999 99999999887653 688998877431 1100 0113334 37
Q ss_pred HHHHhhccCCcEEEEeeChH-----HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 107 VAEAKAETKANASVIYVPPP-----FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 107 l~e~~~~~~~DVaIdfVPp~-----~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
+++++++.++|++|+++|+. .+.+.+..|+++|++.|.. +++.-..+..+|.++|++-.+.
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta-NK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS-NKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC-CcHHHHhhHHHHHHHHHHcCCE
Confidence 88888766899999999963 4689999999999987776 6666666778899999875543
No 31
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.40 E-value=7.1e-07 Score=80.00 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=80.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHH-h-CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEee----ChH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE-Y-GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYV----PPP 126 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~-~-g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfV----Pp~ 126 (181)
+..||+|+|+ | ||+.+.+.+.+ . +++++|.+|++... + +-.|+|.|.+++|+++ ++|+.++++ |+.
T Consensus 2 ~~~rVgViG~-~-~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~--d~Di~~V~ipt~~P~~ 77 (343)
T TIGR01761 2 DVQSVVVCGT-R-FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGG 77 (343)
T ss_pred CCcEEEEEeH-H-HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhc--CCCEEEEEeCCCCCCc
Confidence 3578999999 4 89999998887 4 79999988876432 1 1258999999999997 677777776 457
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.-.+.+.+|+++|++.+ | =-=+..+|.++|.++|++-.
T Consensus 78 ~H~e~a~~aL~aGkHVL-~-EKPla~~Ea~el~~~A~~~g 115 (343)
T TIGR01761 78 QGSALARALLARGIHVL-Q-EHPLHPRDIQDLLRLAERQG 115 (343)
T ss_pred cHHHHHHHHHhCCCeEE-E-cCCCCHHHHHHHHHHHHHcC
Confidence 88999999999997654 3 23344799999999997743
No 32
>PRK08374 homoserine dehydrogenase; Provisional
Probab=98.32 E-value=1.5e-06 Score=77.29 Aligned_cols=105 Identities=21% Similarity=0.143 Sum_probs=73.0
Q ss_pred CceEEEEccCCCCcchhhHHHHH--------hC--CeEeeecCCCC-----CCeE-------------EcCcc----ccc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE--------YG--TKMVGGVTPKK-----GGTE-------------HLGLP----VFN 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~--------~g--~~IVagVdP~~-----~G~e-------------i~GvP----Vy~ 105 (181)
..+|+|+|+ |+.|+..++.+.+ +| ++|++..|... .|-. +..++ .++
T Consensus 2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 368999999 9999988887655 45 66887655321 1100 01111 112
Q ss_pred -cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 106 -SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 106 -sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+.+|+++..++|++|++++++.+.+....++++|++.|.+ +.|.-.+...+|.++|++
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVta-nK~~la~~~~el~~la~~ 139 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTS-NKPPIAFHYDELLDLANE 139 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEEC-CHHHHHhCHHHHHHHHHH
Confidence 6778776568999999999999999999999999999988 777333444455555544
No 33
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.26 E-value=9.1e-07 Score=72.37 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=68.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
++++|+|+|+ |++|+.+..++++.|.+++-+..++.... +-.|+.|+ +++|+.+ +.|++++.+|.+.-.++-+
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~--~aDvV~~L~PD~~q~~vy~ 78 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVK--KADVVMLLLPDEVQPEVYE 78 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHH--C-SEEEE-S-HHHHHHHHH
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHh--hCCEEEEeCChHHHHHHHH
Confidence 3578999999 99999999999999999887776654111 23689888 7788888 7999999999999999987
Q ss_pred HHHHcCCC--EEEEeCCCCCHH
Q 030220 134 EAMEAELD--LVVCITEGIPQH 153 (181)
Q Consensus 134 eaie~GIk--~IV~iTtG~~~e 153 (181)
+-++-..+ .+++|+-||+.+
T Consensus 79 ~~I~p~l~~G~~L~fahGfni~ 100 (165)
T PF07991_consen 79 EEIAPNLKPGATLVFAHGFNIH 100 (165)
T ss_dssp HHHHHHS-TT-EEEESSSHHHH
T ss_pred HHHHhhCCCCCEEEeCCcchhh
Confidence 77776544 488999999876
No 34
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.25 E-value=5.7e-06 Score=83.42 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=83.6
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh-CCe------------EeeecCCCCCC-eE----EcC---ccc-cccHHHHhhc
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTK------------MVGGVTPKKGG-TE----HLG---LPV-FNSVAEAKAE 113 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~-g~~------------IVagVdP~~~G-~e----i~G---vPV-y~sl~e~~~~ 113 (181)
.++.||+|+|+ |++|+.+++.+.+. +.+ +|+..|+.... ++ ..+ +++ +.+.+++.+.
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 44679999999 99999999988774 544 34444443211 11 113 455 6676666542
Q ss_pred -cCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhchh
Q 030220 114 -TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLN 171 (181)
Q Consensus 114 -~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~~~ 171 (181)
.++|++|..+|+....++++.|+++|++.+. +....+++.+|.++|++-.|.+.|
T Consensus 646 v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~---eky~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKACIELKKHLVT---ASYVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHHHHHcCCCEEE---CcCCHHHHHHHHHHHHHcCCEEEE
Confidence 2699999999999999999999999997743 348999999999999988777655
No 35
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.22 E-value=2.7e-06 Score=64.58 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=66.8
Q ss_pred eEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCC-CCeEEc----------Cccccc-cHHHHhhccCCcEEEEeeChH
Q 030220 60 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEHL----------GLPVFN-SVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~-~G~ei~----------GvPVy~-sl~e~~~~~~~DVaIdfVPp~ 126 (181)
||.|+|+||..|+...+.+.+. .++++..+.... .|+.+. .+.+-+ +.+++ + ++|+++.++|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-S--DVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-T--TESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-h--cCCEEEecCchh
Confidence 7999999999999999999885 889888766555 453331 122222 23333 4 799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
.+.+.+..+++.|+ .||-.+.-|..++
T Consensus 78 ~~~~~~~~~~~~g~-~ViD~s~~~R~~~ 104 (121)
T PF01118_consen 78 ASKELAPKLLKAGI-KVIDLSGDFRLDD 104 (121)
T ss_dssp HHHHHHHHHHHTTS-EEEESSSTTTTST
T ss_pred HHHHHHHHHhhCCc-EEEeCCHHHhCCC
Confidence 99999999999999 5555576665544
No 36
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.21 E-value=4.4e-06 Score=76.40 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=81.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHh----------CCeEeeecCCCCCC---eEEcCccccccHHHHhhccCCcEEEEeeC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY----------GTKMVGGVTPKKGG---TEHLGLPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~----------g~~IVagVdP~~~G---~ei~GvPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
..||.|+|+ |.+|+.+++.+.+. ++++++..++.... -...+..+|++.+++++..++|+++++++
T Consensus 3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 478999999 99999887765441 56788876644311 11235678889999987668999999986
Q ss_pred h-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 125 P-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 125 p-~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+ +.+.+.+.+|+++|++.|.. --....++..+|.++|++-.+
T Consensus 82 ~~~~~~~~~~~aL~~GkhVVta-NK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 82 GIEPARELILKALEAGKHVVTA-NKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CchHHHHHHHHHHHCCCeEEEc-CHHHHHHHHHHHHHHHHHcCC
Confidence 5 67899999999999887653 235566788999999977555
No 37
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.21 E-value=5.7e-06 Score=69.79 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=74.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+++|.|+|+ |+||+.+.+.+.+.|. ..|..++++... + +..|+.+.++.+++.+ ++|++++++|+....++
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~--~advVil~v~~~~~~~v 78 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQ--EADVVVLAVKPQVMEEV 78 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHh--cCCEEEEEcCHHHHHHH
Confidence 467999999 9999999999888762 233356654311 1 1136777888888776 79999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
++++....=+.|+.++.|++.+++.++.
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~~~~l~~~~ 106 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVTLARLERLL 106 (267)
T ss_pred HHHHHhhcCCEEEEecCCCCHHHHHHhc
Confidence 9987664225788889999988877664
No 38
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.18 E-value=1.1e-05 Score=67.06 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=73.4
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhC---Ce-EeeecCC-CCC-CeE---EcCccccccHHHHhhccCCcEEEEeeChHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYG---TK-MVGGVTP-KKG-GTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g---~~-IVagVdP-~~~-G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+.+||.|+|+ |+||+.+.+.+.+.+ .+ ++ ..++ +.. .+. -.|+.++.+.+++++ ++|++++.+|+..
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DiViiavp~~~ 78 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEII-VSNRSNVEKLDQLQARYNVSTTTDWKQHVT--SVDTIVLAMPPSA 78 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEE-EECCCCHHHHHHHHHHcCcEEeCChHHHHh--cCCEEEEecCHHH
Confidence 3578999998 999999999887754 33 43 3333 211 111 136778888888887 7999999999999
Q ss_pred HHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHH
Q 030220 128 AAAAIMEAMEA-ELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 128 a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~l~ 159 (181)
..++++++... .=+.||.++.|++.+++.+..
T Consensus 79 ~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~ 111 (245)
T PRK07634 79 HEELLAELSPLLSNQLVVTVAAGIGPSYLEERL 111 (245)
T ss_pred HHHHHHHHHhhccCCEEEEECCCCCHHHHHHHc
Confidence 99999886532 225788889999999877764
No 39
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.18 E-value=6.2e-07 Score=67.25 Aligned_cols=100 Identities=16% Similarity=0.038 Sum_probs=74.6
Q ss_pred ccCCCCcchhhHHHHHh----CCeEeeecCCCCCC------eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 65 GITGKNGTFHTEQAIEY----GTKMVGGVTPKKGG------TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 65 GatGkmG~~~~k~~~~~----g~~IVagVdP~~~G------~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
|+ |++|+.+++.+.+. ++++++..+.. .. ....+..++.+++++++..++|++|++++++.+.+.+..
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~ 78 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEK 78 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHH
Confidence 56 99999999988873 78899887776 11 012356788899999886689999999999999999999
Q ss_pred HHHcCCCEEEEeCCCC--CHHHHHHHHHHhhhhch
Q 030220 135 AMEAELDLVVCITEGI--PQHDMVINFTRVNILLV 167 (181)
Q Consensus 135 aie~GIk~IV~iTtG~--~~ed~~~l~~~ak~ipv 167 (181)
++++|++.|.. .-|- +.....+|.++|++-.+
T Consensus 79 ~L~~G~~VVt~-nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 79 ALERGKHVVTA-NKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp HHHTTCEEEES--HHHHHSHHHHHHHHHHHHHHT-
T ss_pred HHHCCCeEEEE-CHHHhhhHHHHHHHHHHHHHcCC
Confidence 99999999886 4333 33677888888876543
No 40
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.15 E-value=5.3e-06 Score=73.47 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=69.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhccCCcEEEEeeChH-HHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~~ 133 (181)
.++|.|+|+ |+||+.+.+.+.+.|++++.+.++.... .. -.|+.+. +.+++.+ ++|++++.+||+ ......+
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~--~ADiVvLaVpp~~~~~~v~~ 78 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIP--QADLIMNLLPDEVQHEVYEA 78 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHh--cCCEEEEeCCcHhHHHHHHH
Confidence 467999999 9999999999999999877666654211 11 1367665 4777776 799999999999 5444444
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHHHH
Q 030220 134 EAMEA-ELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 134 eaie~-GIk~IV~iTtG~~~ed~~~l 158 (181)
+.... .-..+|.|..||+.+++...
T Consensus 79 ei~~~l~~g~iVs~aaG~~i~~~~~~ 104 (314)
T TIGR00465 79 EIQPLLKEGKTLGFSHGFNIHFVQIV 104 (314)
T ss_pred HHHhhCCCCcEEEEeCCccHhhcccc
Confidence 44432 11248888999999987653
No 41
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.15 E-value=5.3e-06 Score=71.66 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=75.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC---eEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~---~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+||.++|+ |+||..+.+.+.+.|+ .-+...|+.... +. -.|+.++++.+|+.+ ++|++++++||..+.++
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~--~aDiIiLavkP~~~~~v 79 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVAN--SADILILSIKPDLYSSV 79 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHh--hCCEEEEEeChHHHHHH
Confidence 47999999 9999999999988764 123456654422 11 136777778888877 79999999999999999
Q ss_pred HHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030220 132 IMEAMEA--ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
+++.... +=+.|+-+..|++.+++.++..
T Consensus 80 l~~l~~~~~~~~lvISi~AGi~i~~l~~~l~ 110 (272)
T PRK12491 80 INQIKDQIKNDVIVVTIAAGKSIKSTENEFD 110 (272)
T ss_pred HHHHHHhhcCCcEEEEeCCCCcHHHHHHhcC
Confidence 9886543 2357888899999999998763
No 42
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.15 E-value=2.8e-06 Score=61.00 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=60.1
Q ss_pred eEEEEccCCCCcchhhHHHHHhC---CeEeeecCCCCCC-e---EEcCccccc-cHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGG-T---EHLGLPVFN-SVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g---~~IVagVdP~~~G-~---ei~GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
||.++|+ |+||+.+.+.+.+.| .++....+++... . +..++.++. +..|+.+ +.|++++++||....++
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~advvilav~p~~~~~v 77 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQ--EADVVILAVKPQQLPEV 77 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHH--HTSEEEE-S-GGGHHHH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhc--cCCEEEEEECHHHHHHH
Confidence 6899999 999999999999988 6766333433311 1 123566677 7888888 79999999999999999
Q ss_pred HHHHH-HcCCCEEEEeCC
Q 030220 132 IMEAM-EAELDLVVCITE 148 (181)
Q Consensus 132 ~~eai-e~GIk~IV~iTt 148 (181)
+++.- ...=+.+|-++.
T Consensus 78 ~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 78 LSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHHTTSEEEEEST
T ss_pred HHHHhhccCCCEEEEeCC
Confidence 99982 223344444343
No 43
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.14 E-value=4.8e-06 Score=74.09 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=70.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc----Ccc-----ccccHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL----GLP-----VFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~----GvP-----Vy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
++||+|+|+||.+|+.+.+.+.+. ++++++..++...++.+. .++ .|.++++. ...++|++++++|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE-ILAGADVVFLALPHGV 80 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHH-HhcCCCEEEECCCcHH
Confidence 478999999999999999988885 899988777544342221 122 35455443 2237999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 128 AAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
..+.+.++.++|++.|=. +..|.-++
T Consensus 81 ~~~~v~~a~~aG~~VID~-S~~fR~~~ 106 (343)
T PRK00436 81 SMDLAPQLLEAGVKVIDL-SADFRLKD 106 (343)
T ss_pred HHHHHHHHHhCCCEEEEC-CcccCCCC
Confidence 999999999999765544 77776654
No 44
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.13 E-value=9.9e-06 Score=72.51 Aligned_cols=95 Identities=23% Similarity=0.261 Sum_probs=71.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI-M 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~-~ 133 (181)
.++|.|+|+ |+||+.+.+.+.+.|++++.+..+..... +-.|+.+. +++++.+ ++|++++.+|+....+++ +
T Consensus 17 gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~--~ADVVvLaVPd~~~~~V~~~ 92 (330)
T PRK05479 17 GKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAK--WADVIMILLPDEVQAEVYEE 92 (330)
T ss_pred CCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHh--cCCEEEEcCCHHHHHHHHHH
Confidence 367999999 99999999999999999876544422111 12467666 7888888 799999999999988887 4
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHH
Q 030220 134 EAMEA-ELDLVVCITEGIPQHDMV 156 (181)
Q Consensus 134 eaie~-GIk~IV~iTtG~~~ed~~ 156 (181)
+...+ .-..++.|+.||+.+...
T Consensus 93 ~I~~~Lk~g~iL~~a~G~~i~~~~ 116 (330)
T PRK05479 93 EIEPNLKEGAALAFAHGFNIHFGQ 116 (330)
T ss_pred HHHhcCCCCCEEEECCCCChhhce
Confidence 44433 122466889999999865
No 45
>PRK06091 membrane protein FdrA; Validated
Probab=98.13 E-value=9.6e-06 Score=76.99 Aligned_cols=67 Identities=19% Similarity=0.150 Sum_probs=58.4
Q ss_pred CccccccHHHHhhcc-CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 100 GLPVFNSVAEAKAET-KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 100 GvPVy~sl~e~~~~~-~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++|.|++++++.++. ++|+++++||+..+.+.+++|+++| +.+++||.||+.++..+|.++|++-.+
T Consensus 101 ~~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G-~~viI~S~gfg~~~E~~L~e~Ar~~Gl 168 (555)
T PRK06091 101 SLTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRN-LNVMMFSDNVTLEDEIRLKTRAREKGL 168 (555)
T ss_pred CCcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHHHHcCC
Confidence 578888888877644 5799999999999999999999999 567788999999999999999977543
No 46
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.12 E-value=2.7e-06 Score=67.58 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=72.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE--cCccccccHHHHhhccCCcEEEEeeCh-HHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH--LGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp-~~a~~~~~ 133 (181)
+++|.++|. |+||+.+.+.+.+.|+++.. ..+|.+.. +. .|..+.++++|+.+ ++|+++.++|. +.+.++++
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~-~~~~~g~~~~~s~~e~~~--~~dvvi~~v~~~~~v~~v~~ 76 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAE-ALAEAGAEVADSPAEAAE--QADVVILCVPDDDAVEAVLF 76 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHH-HHHHTTEEEESSHHHHHH--HBSEEEE-SSSHHHHHHHHH
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhh-hhHHhhhhhhhhhhhHhh--cccceEeecccchhhhhhhh
Confidence 578999999 99999999999999999753 33333321 11 47889999999998 78999999998 45566666
Q ss_pred H--HHHcC-CCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 134 E--AMEAE-LDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 134 e--aie~G-Ik~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
. .+..- -..+++-++-.+.++..++.+......
T Consensus 77 ~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g 112 (163)
T PF03446_consen 77 GENILAGLRPGKIIIDMSTISPETSRELAERLAAKG 112 (163)
T ss_dssp CTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT
T ss_pred hhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc
Confidence 5 55542 344555577888888888888876543
No 47
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.12 E-value=1.1e-05 Score=67.95 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=74.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC----eEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT----KMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~----~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+||.++|+ |+||+.+.+.+.+.|+ +|+.-.|+.....+ -.|+.+.++..++.+ ++|++|+++||+.+.++
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVil~v~~~~~~~v 77 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVK--SSDVIILAVKPQVVKDV 77 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHh--cCCEEEEEECcHHHHHH
Confidence 46999998 9999999999998876 65533255432111 147888888888877 79999999999999999
Q ss_pred HHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030220 132 IMEAMEA--ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
++.+... .=+.||.++.|++.+++.++..
T Consensus 78 l~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~ 108 (266)
T PLN02688 78 LTELRPLLSKDKLLVSVAAGITLADLQEWAG 108 (266)
T ss_pred HHHHHhhcCCCCEEEEecCCCcHHHHHHHcC
Confidence 9876543 1245677789999998886653
No 48
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.11 E-value=1.5e-05 Score=68.58 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=72.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC----CeEeeecCCCCCC--e----EEcCccccccHHHHhhccCCcEEEEeeChHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGG--T----EHLGLPVFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g----~~IVagVdP~~~G--~----ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
++|.|+|+ |+||+.+.+.+.+.| .+++ .+++.... . +..++.+..+..++.+ ++|++|+++||..+
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~-~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~--~aDvVilavpp~~~ 77 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEII-LYSSSKNEHFNQLYDKYPTVELADNEAEIFT--KCDHSFICVPPLAV 77 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEE-EEeCCcHHHHHHHHHHcCCeEEeCCHHHHHh--hCCEEEEecCHHHH
Confidence 57999998 999999999988876 4555 34432211 0 1223455677788776 79999999999999
Q ss_pred HHHHHHHHH---cCCCEEEEeCCCCCHHHHHHHHH
Q 030220 129 AAAIMEAME---AELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 129 ~~~~~eaie---~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
.++++++.. .+ +.||.++.|++.+++.++..
T Consensus 78 ~~vl~~l~~~l~~~-~~ivS~~aGi~~~~l~~~~~ 111 (277)
T PRK06928 78 LPLLKDCAPVLTPD-RHVVSIAAGVSLDDLLEITP 111 (277)
T ss_pred HHHHHHHHhhcCCC-CEEEEECCCCCHHHHHHHcC
Confidence 999998854 34 35777799999999988753
No 49
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.10 E-value=7.2e-06 Score=73.65 Aligned_cols=94 Identities=24% Similarity=0.314 Sum_probs=71.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
..+|.|+|. |+||+.+++++...|+++++..++..... +..|+.++ +++|+.+ ++|++++.+|.+...++..+-
T Consensus 16 gKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak--~ADVV~llLPd~~t~~V~~~e 91 (335)
T PRK13403 16 GKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVR--TAQVVQMLLPDEQQAHVYKAE 91 (335)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHh--cCCEEEEeCCChHHHHHHHHH
Confidence 356999999 99999999999999999987666543211 12477665 8999988 899999999987766666543
Q ss_pred HHcCC--CEEEEeCCCCCHHHH
Q 030220 136 MEAEL--DLVVCITEGIPQHDM 155 (181)
Q Consensus 136 ie~GI--k~IV~iTtG~~~ed~ 155 (181)
+-... ..+++|+-||+.|.-
T Consensus 92 il~~MK~GaiL~f~hgfni~~~ 113 (335)
T PRK13403 92 VEENLREGQMLLFSHGFNIHFG 113 (335)
T ss_pred HHhcCCCCCEEEECCCcceecC
Confidence 44433 358999999998753
No 50
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.10 E-value=2.8e-05 Score=66.27 Aligned_cols=97 Identities=21% Similarity=0.198 Sum_probs=73.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-C--eEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-T--KMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~--~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
++||.++|+ |+||..+.+.+.+.+ . +-+...+++... .++....+..++.+ ++|++++++||....+++.+
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~--~~D~Vilavkp~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN---TPFVYLQSNEELAK--TCDIIVLAVKPDLAGKVLLE 76 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc---CCeEEeCChHHHHH--hCCEEEEEeCHHHHHHHHHH
Confidence 368999999 999999999988865 2 113356665421 23444556677766 78999999999999999998
Q ss_pred HHHc-CCCEEEEeCCCCCHHHHHHHHH
Q 030220 135 AMEA-ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
+... +-+.||.+..|++.+++.++..
T Consensus 77 i~~~l~~~~iIS~~aGi~~~~l~~~~~ 103 (260)
T PTZ00431 77 IKPYLGSKLLISICGGLNLKTLEEMVG 103 (260)
T ss_pred HHhhccCCEEEEEeCCccHHHHHHHcC
Confidence 7653 2357888899999998888754
No 51
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.07 E-value=6.5e-06 Score=72.94 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=70.1
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeec--CCCCCCe---EEcCccc-cccHHHHhhc---cCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGV--TPKKGGT---EHLGLPV-FNSVAEAKAE---TKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagV--dP~~~G~---ei~GvPV-y~sl~e~~~~---~~~DVaIdfVPp~~ 127 (181)
..||.|+|. |++|+.+...+.+ .++++++.+ ||+..+. +-.|+|. |++++++++. .++|++++.+|+..
T Consensus 4 klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~ 82 (302)
T PRK08300 4 KLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA 82 (302)
T ss_pred CCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH
Confidence 478999995 9999987777766 488988765 4543331 1258998 5789999875 57999999999999
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 030220 128 AAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~ 145 (181)
..+.+..+.++|+..|..
T Consensus 83 H~e~a~~a~eaGk~VID~ 100 (302)
T PRK08300 83 HVRHAAKLREAGIRAIDL 100 (302)
T ss_pred HHHHHHHHHHcCCeEEEC
Confidence 999999999999988766
No 52
>PRK07680 late competence protein ComER; Validated
Probab=98.07 E-value=1.9e-05 Score=67.36 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=72.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCC---eEeeecCCCCCC-----eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~---~IVagVdP~~~G-----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+|.|+|+ |+||+.+.+.+.+.|. .-|...|++... ++..|+.+..+..++.+ ++|++++++||....++
T Consensus 2 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDiVilav~p~~~~~v 78 (273)
T PRK07680 2 NIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVIS--QSDLIFICVKPLDIYPL 78 (273)
T ss_pred EEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHH--hCCEEEEecCHHHHHHH
Confidence 6999998 9999999999888773 233455654311 01236778888888776 79999999999999999
Q ss_pred HHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030220 132 IMEAMEA--ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
+++.... .=+.|+.++.|++.+++.++..
T Consensus 79 l~~l~~~l~~~~~iis~~ag~~~~~L~~~~~ 109 (273)
T PRK07680 79 LQKLAPHLTDEHCLVSITSPISVEQLETLVP 109 (273)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHHHHHHcC
Confidence 9886543 1246788899999887776643
No 53
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.05 E-value=1.8e-05 Score=69.17 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=80.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCC-eEE-cCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG-TEH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G-~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
..||.|+|| |.+|+.+++.+.+. ++++++..++.... +.. ...+++.++++++. .++|++|-+-+++++.+.+
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLA-WRPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhh-cCCCEEEECCCHHHHHHHH
Confidence 468999999 99999999987762 47888765544211 111 24889999999853 2799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHH-HHHHHHHhhh
Q 030220 133 MEAMEAELDLVVCITEGIPQHD-MVINFTRVNI 164 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed-~~~l~~~ak~ 164 (181)
+..+++|+..++.-..-|.+++ .++|.++|++
T Consensus 80 ~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 80 EGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 9999999999998445566544 5677777754
No 54
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.04 E-value=1.2e-05 Score=70.59 Aligned_cols=86 Identities=19% Similarity=0.107 Sum_probs=68.1
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecC--CCCCC---eEEcCccccc-cHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT--PKKGG---TEHLGLPVFN-SVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVd--P~~~G---~ei~GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.||+|+|+ |++|+.+...+.+ .++++++.+| |...+ .+-.|+|.+. +.+++++..++|++++++|+....+.
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~ 80 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH 80 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 58999998 9999988766665 5889887655 54323 1225888654 78998876679999999999999999
Q ss_pred HHHHHHcCCCEEEE
Q 030220 132 IMEAMEAELDLVVC 145 (181)
Q Consensus 132 ~~eaie~GIk~IV~ 145 (181)
+..++++|++.+..
T Consensus 81 a~~al~aGk~VIde 94 (285)
T TIGR03215 81 ARLLAELGKIVIDL 94 (285)
T ss_pred HHHHHHcCCEEEEC
Confidence 99999999887644
No 55
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.02 E-value=1.2e-05 Score=71.80 Aligned_cols=93 Identities=18% Similarity=0.305 Sum_probs=75.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC---eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G---~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
..+|+|+|+ |.+|+++..++.+.|.+|+-|+-++..- -+-.|+.|| +++|+.+ ..|++++.+|.+.-.++-++
T Consensus 18 gK~iaIIGY-GsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k--~ADvim~L~PDe~q~~vy~~ 93 (338)
T COG0059 18 GKKVAIIGY-GSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAK--RADVVMILLPDEQQKEVYEK 93 (338)
T ss_pred CCeEEEEec-ChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhh--cCCEEEEeCchhhHHHHHHH
Confidence 457999999 9999999999999999988787766531 023699999 7788888 79999999999988888886
Q ss_pred HHHcCCCE--EEEeCCCCCHHH
Q 030220 135 AMEAELDL--VVCITEGIPQHD 154 (181)
Q Consensus 135 aie~GIk~--IV~iTtG~~~ed 154 (181)
-++-..+. ++.|+-||+.|.
T Consensus 94 ~I~p~Lk~G~aL~FaHGfNihf 115 (338)
T COG0059 94 EIAPNLKEGAALGFAHGFNIHF 115 (338)
T ss_pred HhhhhhcCCceEEeccccceec
Confidence 66554332 888999999875
No 56
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.00 E-value=4e-05 Score=65.69 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=72.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC----CeEeeecCCCCCC--eE---EcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGG--TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g----~~IVagVdP~~~G--~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+||.++|+ |+||+.+.+.+.+.| .+++ ..|+.... .. -.|+.+.++..++.+ ++|++|+.+||....
T Consensus 4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~--~aDvVilav~p~~~~ 79 (279)
T PRK07679 4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSNETRLQELHQKYGVKGTHNKKELLT--DANILFLAMKPKDVA 79 (279)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCCHHHHHHHHHhcCceEeCCHHHHHh--cCCEEEEEeCHHHHH
Confidence 57999998 999999999998876 4444 45543211 11 136777788888776 789999999999999
Q ss_pred HHHHHHHHc--CCCEEEEeCCCCCHHHHHHHH
Q 030220 130 AAIMEAMEA--ELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 130 ~~~~eaie~--GIk~IV~iTtG~~~ed~~~l~ 159 (181)
++++..... .=+.||-+..|++.+++.++.
T Consensus 80 ~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~ 111 (279)
T PRK07679 80 EALIPFKEYIHNNQLIISLLAGVSTHSIRNLL 111 (279)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 999877643 124566667999999888865
No 57
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.98 E-value=2e-05 Score=66.63 Aligned_cols=99 Identities=6% Similarity=0.011 Sum_probs=72.8
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeE--eeecCCCCCC-eE----EcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKM--VGGVTPKKGG-TE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~I--VagVdP~~~G-~e----i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
||.++|+ |+||+.+.+.+.+.|.++ +...|+.... ++ ..|+.++++.+++.+ ++|++++.+||+...+++
T Consensus 2 ~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~--~aDvVilav~p~~~~~vl 78 (258)
T PRK06476 2 KIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVD--RSDVVFLAVRPQIAEEVL 78 (258)
T ss_pred eEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHH--hCCEEEEEeCHHHHHHHH
Confidence 6999998 999999999988866542 3334443211 11 225778888888877 789999999999999988
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
+++--..=+.||.+..|++.+++.++...
T Consensus 79 ~~l~~~~~~~vis~~ag~~~~~l~~~~~~ 107 (258)
T PRK06476 79 RALRFRPGQTVISVIAATDRAALLEWIGH 107 (258)
T ss_pred HHhccCCCCEEEEECCCCCHHHHHHHhCC
Confidence 76521122467777899999999988754
No 58
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.86 E-value=5.2e-05 Score=66.17 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=77.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-C--eEeeecCCCCCCeE----EcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-T--KMVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~--~IVagVdP~~~G~e----i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+++|.++|+ |+||+.+...+.+.| . +.|...||...-.. -.|+.+.++..++.+ +.|++++.|.|....+
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~--~advv~LavKPq~~~~ 77 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVE--EADVVFLAVKPQDLEE 77 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHh--hCCEEEEEeChHhHHH
Confidence 367999999 999999999999977 1 23435666543221 135556667777777 7999999999999999
Q ss_pred HHHHHHH-cCCCEEEEeCCCCCHHHHHHHHH
Q 030220 131 AIMEAME-AELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 131 ~~~eaie-~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
++..+-. ..=+.||-+..|++.++++.+..
T Consensus 78 vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~ 108 (266)
T COG0345 78 VLSKLKPLTKDKLVISIAAGVSIETLERLLG 108 (266)
T ss_pred HHHHhhcccCCCEEEEEeCCCCHHHHHHHcC
Confidence 9999874 34456888899999999998875
No 59
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.86 E-value=6.9e-05 Score=64.69 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=79.8
Q ss_pred eEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
+|.++|| |..|+.+++.+.+. ++++++.-|..... .+ -.+-+.-.+++|.++ ++|++|=+-.++++.+.+.
T Consensus 2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~--~~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIA--EVDLVVEAASPEAVREYVP 78 (255)
T ss_pred eEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhh--ccceeeeeCCHHHHHHHhH
Confidence 6899999 99999999988874 68888776644321 11 123334478999986 8999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCCHHH-HHHHHHHhhhh
Q 030220 134 EAMEAELDLVVCITEGIPQHD-MVINFTRVNIL 165 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~ed-~~~l~~~ak~i 165 (181)
.++++|+..+|.-+.-|.+++ .+++.+++|..
T Consensus 79 ~~L~~g~d~iV~SVGALad~~l~erl~~lak~~ 111 (255)
T COG1712 79 KILKAGIDVIVMSVGALADEGLRERLRELAKCG 111 (255)
T ss_pred HHHhcCCCEEEEechhccChHHHHHHHHHHhcC
Confidence 999999999998555577666 45566777653
No 60
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=97.83 E-value=0.00012 Score=57.95 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=61.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCC--CCCCeEEcCccccccHHHHhhc-cCCcEEEEee-ChHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP--KKGGTEHLGLPVFNSVAEAKAE-TKANASVIYV-PPPFAAAAIMEA 135 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP--~~~G~ei~GvPVy~sl~e~~~~-~~~DVaIdfV-Pp~~a~~~~~ea 135 (181)
+++|+|+ |.+|+.+++.+.+.|+++++-+|. .+.+..+.|+|++...+++.+. .+.+..++.+ ++..-++..+.+
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l 79 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKL 79 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHH
Confidence 4899999 999999999998889999998774 4445678999999876665432 1356777777 455556666667
Q ss_pred HHcCCCEE
Q 030220 136 MEAELDLV 143 (181)
Q Consensus 136 ie~GIk~I 143 (181)
.+.+++..
T Consensus 80 ~~~g~~~~ 87 (201)
T TIGR03570 80 KAKGYRFA 87 (201)
T ss_pred HhCCCcce
Confidence 67776554
No 61
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.82 E-value=6.9e-05 Score=58.72 Aligned_cols=85 Identities=27% Similarity=0.287 Sum_probs=62.3
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecC-CCC----CCeEEcCccccc--cHHHHhhccCCcEEEEeeC-----hHHH
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKK----GGTEHLGLPVFN--SVAEAKAETKANASVIYVP-----PPFA 128 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~----~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVP-----p~~a 128 (181)
|+|.|+||..|+.+++.+.+.|.+|.+.+- |.+ .+-++.-.-+++ ++.++++ ++|+++.+++ ...+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~~~~~ 78 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKDVDAA 78 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhccccccc
Confidence 789999999999999999999999998654 221 111221111222 4667676 8999999998 5667
Q ss_pred HHHHHHHHHcCCCEEEEeC
Q 030220 129 AAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iT 147 (181)
..+++.+-++|++.+|.++
T Consensus 79 ~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 79 KNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp HHHHHHHHHTTSSEEEEEE
T ss_pred ccccccccccccccceeee
Confidence 7777777888999887655
No 62
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.82 E-value=5.7e-05 Score=65.54 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=73.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhcc-CCcEEEEeeChH-HHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAIME 134 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~-~~DVaIdfVPp~-~a~~~~~e 134 (181)
+|.++|. |+||+...+.+.+.|++|+ ..|+.... ++ -.|..++++++++.++. ++|++++++|+. .+.++++.
T Consensus 2 ~Ig~IGl-G~mG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~ 79 (299)
T PRK12490 2 KLGLIGL-GKMGGNMAERLREDGHEVV-GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD 79 (299)
T ss_pred EEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH
Confidence 6999999 9999999999999999876 45544211 11 14778889999987643 379999999998 77777776
Q ss_pred HHHcC-C-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 135 AMEAE-L-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 135 aie~G-I-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
....- - +.+|. ++..+..+..++.+..++-.+
T Consensus 80 i~~~l~~g~ivid-~st~~~~~~~~~~~~~~~~g~ 113 (299)
T PRK12490 80 LYPLLSPGDIVVD-GGNSRYKDDLRRAEELAERGI 113 (299)
T ss_pred HhccCCCCCEEEE-CCCCCchhHHHHHHHHHHcCC
Confidence 55432 1 24555 656666667777666654443
No 63
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=97.80 E-value=6.7e-05 Score=63.86 Aligned_cols=82 Identities=9% Similarity=0.010 Sum_probs=65.7
Q ss_pred CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC-C-CHHHH
Q 030220 82 GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG-I-PQHDM 155 (181)
Q Consensus 82 g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG-~-~~ed~ 155 (181)
++++++..|+.... + +..|+++|++++|+++ .++|++++++|+....+.+..++++|++.++. +.| + ..++.
T Consensus 1 ~~eLvaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~-s~gAlad~e~~ 78 (229)
T TIGR03855 1 NFEIAAVYDRNPKDAKELAERCGAKIVSDFDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLIM-SVGALADRELR 78 (229)
T ss_pred CeEEEEEECCCHHHHHHHHHHhCCceECCHHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEEE-CCcccCCHHHH
Confidence 46788877776422 1 1247899999999975 37999999999999999999999999988885 665 3 56889
Q ss_pred HHHHHHhhhh
Q 030220 156 VINFTRVNIL 165 (181)
Q Consensus 156 ~~l~~~ak~i 165 (181)
.+|.+++++-
T Consensus 79 ~~l~~aA~~~ 88 (229)
T TIGR03855 79 ERLREVARSS 88 (229)
T ss_pred HHHHHHHHhc
Confidence 9999998763
No 64
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.80 E-value=8.4e-05 Score=67.09 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=89.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCCCC-eE---EcC---ccccccHHHHhhccCCcEEEEeeChH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGG-TE---HLG---LPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~~G-~e---i~G---vPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+..|+-++|+ |++++..++.+.. .+..|||..||...- ++ -++ .++|++.+|+.+..++|++.+.+|..
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 4678999999 9999988776555 389999999995421 11 133 58999999999877899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.-++++..|+++|.+..+==--..+++|.++|.|+|+.=.|
T Consensus 84 qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv 124 (351)
T KOG2741|consen 84 QHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGV 124 (351)
T ss_pred cHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence 99999999999999955433367999999999999987543
No 65
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.77 E-value=8.6e-05 Score=64.39 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=73.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhcc-CCcEEEEeeChH-HHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~-~~DVaIdfVPp~-~a~~~~~ 133 (181)
+||.++|. |+||+...+.+.+.|++++ ..|+.... +. -.|..++++++|+.+.. ++|++++++|+. .+.++++
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~ 78 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGHEVV-GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID 78 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH
Confidence 37999999 9999999999999999865 34544211 11 14788888999987643 479999999987 6677776
Q ss_pred HHHHcC--CCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 134 EAMEAE--LDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 134 eaie~G--Ik~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.+...- =+.+|..+++-+ +...++.+.+++..+.
T Consensus 79 ~l~~~l~~g~ivid~st~~~-~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 79 ELAPLLSPGDIVIDGGNSYY-KDDIRRAELLAEKGIH 114 (301)
T ss_pred HHHhhCCCCCEEEeCCCCCh-hHHHHHHHHHHHcCCE
Confidence 655431 145666455554 4555666666554443
No 66
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.76 E-value=5.8e-05 Score=65.90 Aligned_cols=99 Identities=20% Similarity=0.104 Sum_probs=67.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-----------eEEcC------ccccccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-----------TEHLG------LPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-----------~ei~G------vPVy~sl~e~~~~~~~DVaI 120 (181)
++||.|+|+ |.||......+.+.|.++. .+++.... ..+.| +...++++|+.+ ++|+++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~--~aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA--GADFAV 79 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc--CCCEEE
Confidence 468999999 9999999999998888865 34432110 00113 335567888776 799999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHH--HHHHHHHh
Q 030220 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD--MVINFTRV 162 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed--~~~l~~~a 162 (181)
+++|+..+.++++.+ ..+. .++.+++|+..++ ...+.+..
T Consensus 80 ~~v~~~~~~~v~~~l-~~~~-~vi~~~~Gi~~~~~~~~~l~~~l 121 (328)
T PRK14618 80 VAVPSKALRETLAGL-PRAL-GYVSCAKGLAPDGGRLSELARVL 121 (328)
T ss_pred EECchHHHHHHHHhc-CcCC-EEEEEeeccccCCCccchHHHHH
Confidence 999999887776543 3343 4566699987554 44444443
No 67
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.75 E-value=7.2e-05 Score=66.78 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=68.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCC-CCeEE----cCcc-----ccc--cHHHHhhccCCcEEEEeeCh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEH----LGLP-----VFN--SVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~-~G~ei----~GvP-----Vy~--sl~e~~~~~~~DVaIdfVPp 125 (181)
+||+|+|+||-.|+.+.+.+.+. ++++++.++... .|+.+ ..++ .+. +.+++.+ ++|++++++|.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence 47999999999999999999885 889886645332 33222 1111 133 3445544 79999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDM 155 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~ 155 (181)
..+.+.+..+.++|++.|=. +.-|..++.
T Consensus 79 ~~s~~~~~~~~~~G~~VIDl-S~~fR~~~~ 107 (346)
T TIGR01850 79 GVSAELAPELLAAGVKVIDL-SADFRLKDP 107 (346)
T ss_pred hHHHHHHHHHHhCCCEEEeC-ChhhhcCCh
Confidence 99999999999999655544 887776653
No 68
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.75 E-value=6.8e-05 Score=58.64 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=60.2
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-----eEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
.+..||.|+|+ ||.|+...+.+.+.|++|++..++.... ..+.+.++. +++|+.+ +.|+++++||.+...+
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~-~~~~~~~--~aDlv~iavpDdaI~~ 83 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAIL-DLEEILR--DADLVFIAVPDDAIAE 83 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT------TTGGGC--C-SEEEE-S-CCHHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccc-ccccccc--cCCEEEEEechHHHHH
Confidence 45688999999 9999999999999999998766655422 124455665 4677776 7999999999999999
Q ss_pred HHHHHHHcC---CCEEEEeCCCCCHHH
Q 030220 131 AIMEAMEAE---LDLVVCITEGIPQHD 154 (181)
Q Consensus 131 ~~~eaie~G---Ik~IV~iTtG~~~ed 154 (181)
+++++...| -..+|+=|.|--.-|
T Consensus 84 va~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 84 VAEQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred HHHHHHHhccCCCCcEEEECCCCChHH
Confidence 999998772 223555577754444
No 69
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.73 E-value=0.00014 Score=63.33 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=64.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
.+||.|+|+ |+||+...+.+.+.|.+|. ..|+... .+++++.+ +.|++++++|.....++++.+..
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~~V~-~~~r~~~----------~~~~~~~~--~advvi~~vp~~~~~~v~~~l~~ 69 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGHRVR-VWSRRSG----------LSLAAVLA--DADVIVSAVSMKGVRPVAEQVQA 69 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEE-EEeCCCC----------CCHHHHHh--cCCEEEEECChHHHHHHHHHHHH
Confidence 468999999 9999999999999898876 5555431 46778777 79999999999988888877654
Q ss_pred cCC---CEEEEeCCCCCHHHHH
Q 030220 138 AEL---DLVVCITEGIPQHDMV 156 (181)
Q Consensus 138 ~GI---k~IV~iTtG~~~ed~~ 156 (181)
+.. ..|+..|.|+..+...
T Consensus 70 ~~~~~~~ivi~~s~gi~~~~~~ 91 (308)
T PRK14619 70 LNLPPETIIVTATKGLDPETTR 91 (308)
T ss_pred hcCCCCcEEEEeCCcccCCCCc
Confidence 322 3466667788766544
No 70
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.71 E-value=0.00016 Score=61.94 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=69.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhccCCcEEEEeeChHHHHH-HH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AI-- 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~-~~-- 132 (181)
++|.|+|+ |.||+.+.+.+.+.|+++. +.|+.... +. -.|+.+.++.+|+.+ ++|++++++|.....+ ++
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~~~~e~~~--~~d~vi~~vp~~~~~~~v~~~ 78 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VYDRNPEAVAEVIAAGAETASTAKAVAE--QCDVIITMLPNSPHVKEVALG 78 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHcC
Confidence 47999998 9999999999998898876 45654311 11 136777788999887 7999999999665433 33
Q ss_pred -HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 133 -MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 133 -~eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
+.+... .- +.|+. ++.++.....++.+..+...
T Consensus 79 ~~~~~~~~~~g~iiid-~st~~~~~~~~l~~~~~~~g 114 (296)
T PRK11559 79 ENGIIEGAKPGTVVID-MSSIAPLASREIAAALKAKG 114 (296)
T ss_pred cchHhhcCCCCcEEEE-CCCCCHHHHHHHHHHHHHcC
Confidence 223332 11 23454 56667777777777765543
No 71
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.67 E-value=0.00017 Score=62.57 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=68.6
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhc-cCCcEEEEeeChHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAE-TKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~-~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+|.|+|. |+||..+.+.+.+.|++++. .|+.... +++ .|...+.+++++.+. .++|++++++|+..+.++++++
T Consensus 2 ~Ig~IGl-G~mG~~la~~L~~~g~~V~~-~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l 79 (298)
T TIGR00872 2 QLGLIGL-GRMGANIVRRLAKRGHDCVG-YDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEEL 79 (298)
T ss_pred EEEEEcc-hHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHH
Confidence 6999999 99999999999999998764 4544211 011 356666787776543 2689999999999888888777
Q ss_pred HHcCC--CEEEEeCCCCCHHHHHHHHHHhh
Q 030220 136 MEAEL--DLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 136 ie~GI--k~IV~iTtG~~~ed~~~l~~~ak 163 (181)
...-- +.||..+++.+. +..++.+..+
T Consensus 80 ~~~l~~g~ivid~st~~~~-~t~~~~~~~~ 108 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYK-DSLRRYKLLK 108 (298)
T ss_pred HhhCCCCCEEEECCCCCcc-cHHHHHHHHH
Confidence 65411 456665565555 4444444433
No 72
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.66 E-value=0.00013 Score=66.35 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=67.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc---------CccccccHHHH-hhccCCcEEEEeeCh
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL---------GLPVFNSVAEA-KAETKANASVIYVPP 125 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~---------GvPVy~sl~e~-~~~~~~DVaIdfVPp 125 (181)
..+||+|+|+||..|+..++.+.+. +++|.........|+.+. .++.+.++++. ++ ++|+++..+|.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~--~~DvVf~Alp~ 114 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS--DVDAVFCCLPH 114 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc--CCCEEEEcCCH
Confidence 5579999999999999999999886 889887655333343221 12223333332 23 79999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDM 155 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~ 155 (181)
..+.+.+..+ +.|.+.|-+ +.-|.-++-
T Consensus 115 ~~s~~i~~~~-~~g~~VIDl-Ss~fRl~~~ 142 (381)
T PLN02968 115 GTTQEIIKAL-PKDLKIVDL-SADFRLRDI 142 (381)
T ss_pred HHHHHHHHHH-hCCCEEEEc-CchhccCCc
Confidence 9999999995 788665554 776665554
No 73
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.65 E-value=5.7e-05 Score=64.86 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=68.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC--CCC---eE------E------cCccccccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGG---TE------H------LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~--~~G---~e------i------~GvPVy~sl~e~~~~~~~DVaI 120 (181)
++||.|+|+ |.||......+.+.|.++. .+++. ... .. . .++.+..+.+++.+ ++|+++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vi 76 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGHDVT-LWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA--DADLIL 76 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh--CCCEEE
Confidence 358999999 9999999999998888854 33332 110 00 0 13445567777776 799999
Q ss_pred EeeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHHHHHHHHHh
Q 030220 121 IYVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~-G-Ik~IV~iTtG~~~ed~~~l~~~a 162 (181)
+++|+....++++.+... . =+.|+.++.|++.+...++.+..
T Consensus 77 ~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l 120 (325)
T PRK00094 77 VAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVL 120 (325)
T ss_pred EeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHH
Confidence 999999888888776653 1 13456556688876544444433
No 74
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.64 E-value=0.00017 Score=59.07 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=62.0
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC--eEE--cCccc----cc---cHHHHhhccCCcEEEEeeC-----
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEH--LGLPV----FN---SVAEAKAETKANASVIYVP----- 124 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G--~ei--~GvPV----y~---sl~e~~~~~~~DVaIdfVP----- 124 (181)
|+|.|+||++|+.+++.+.+.+++|.+.+.+.... ++. .|+.+ |+ ++.++++ ++|+++..++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~--g~d~v~~~~~~~~~~ 78 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALK--GVDAVFSVTPPSHPS 78 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHT--TCSEEEEESSCSCCC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHc--CCceEEeecCcchhh
Confidence 78999999999999999999999999877644210 010 23322 22 4666666 8999999999
Q ss_pred -hHHHHHHHHHHHHcCCCEEEE
Q 030220 125 -PPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 125 -p~~a~~~~~eaie~GIk~IV~ 145 (181)
.+.....++.|.++||+.+|-
T Consensus 79 ~~~~~~~li~Aa~~agVk~~v~ 100 (233)
T PF05368_consen 79 ELEQQKNLIDAAKAAGVKHFVP 100 (233)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEE
T ss_pred hhhhhhhHHHhhhccccceEEE
Confidence 557888999999999999984
No 75
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.63 E-value=0.00011 Score=65.34 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=65.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeee-cCCCCCCeEEc---Cc-------------cccc-cHHHHhhccCCcE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGG-VTPKKGGTEHL---GL-------------PVFN-SVAEAKAETKANA 118 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVag-VdP~~~G~ei~---Gv-------------PVy~-sl~e~~~~~~~DV 118 (181)
+.||+|+|+||.+|+.+.+.+.+. .+++++. .++...|+.+. ++ .+-. +.++ .+ ++|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~Dv 79 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VD--DVDI 79 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hc--CCCE
Confidence 378999999999999999988885 7788876 55555553332 11 1111 2232 23 7999
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCC
Q 030220 119 SVIYVPPPFAAAAIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 119 aIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~ 151 (181)
+++++|...+.+.++.+.++|++.|.. +.-|.
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~vIDl-s~~fR 111 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPVFSN-ASAHR 111 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEEEEC-Cchhc
Confidence 999999999999999999999987766 65443
No 76
>PLN02256 arogenate dehydrogenase
Probab=97.61 E-value=0.0001 Score=64.83 Aligned_cols=76 Identities=12% Similarity=0.235 Sum_probs=58.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+.++|.|+|+ |.||+.+.+.+.+.|.+|+ ++|+..... .-.|+..+.+.+++.. .++|++++++|+....+++++
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~~V~-~~d~~~~~~~a~~~gv~~~~~~~e~~~-~~aDvVilavp~~~~~~vl~~ 111 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGHTVL-ATSRSDYSDIAAELGVSFFRDPDDFCE-EHPDVVLLCTSILSTEAVLRS 111 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECccHHHHHHHcCCeeeCCHHHHhh-CCCCEEEEecCHHHHHHHHHh
Confidence 3468999998 9999999999988888877 566554211 1146777888888753 268999999999999998888
Q ss_pred H
Q 030220 135 A 135 (181)
Q Consensus 135 a 135 (181)
.
T Consensus 112 l 112 (304)
T PLN02256 112 L 112 (304)
T ss_pred h
Confidence 6
No 77
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.53 E-value=0.00024 Score=63.38 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=70.5
Q ss_pred ceEEEEccCCCCcchhhHHHHH--------hCCeEeeecCCCC-----CCeEE---------cCcccc--c--cHHHHhh
Q 030220 59 TRVICQGITGKNGTFHTEQAIE--------YGTKMVGGVTPKK-----GGTEH---------LGLPVF--N--SVAEAKA 112 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~--------~g~~IVagVdP~~-----~G~ei---------~GvPVy--~--sl~e~~~ 112 (181)
+||+|+|+ |+.|+.+++.+.+ .++++|+..|... .|-.+ ..+..| . +++++++
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 37999999 9999999998766 2567887544321 11000 011122 2 5666654
Q ss_pred ccCCcEEEEeeChH----HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 113 ETKANASVIYVPPP----FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 113 ~~~~DVaIdfVPp~----~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.++|++|+++|.. .+.+....++++|++.|.. .-|.-.....+|.++|++-.
T Consensus 80 -~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa-NKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 80 -IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA-NKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred -CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC-CHHHHHhhHHHHHHHHHHcC
Confidence 4799999999732 3678889999999999876 44444456678888887643
No 78
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.52 E-value=0.00049 Score=59.03 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=68.3
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-E--EcCccccccHHHHhhccCCcEEEEeeChHHHHH-HH---
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AI--- 132 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~-~~--- 132 (181)
||.|+|. |+||+.+.+.+.+.|++|+ +.|+...-- . -.|.....+.+++.+ ++|++++++|.....+ ++
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~v~~~~ 76 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGYQLH-VTTIGPEVADELLAAGAVTAETARQVTE--QADVIFTMVPDSPQVEEVAFGE 76 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcCc
Confidence 5889999 9999999999999999876 556543110 1 135666778888887 7999999999864433 33
Q ss_pred HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 133 MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 133 ~eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
+.++.. .- +.|+. ++.++..+..++.+..++.
T Consensus 77 ~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~ 110 (291)
T TIGR01505 77 NGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK 110 (291)
T ss_pred chHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc
Confidence 222322 11 24555 5566677777777777654
No 79
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.52 E-value=0.00027 Score=61.49 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=71.3
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEe-eecCCCCCCeEE--cCccccccHHHHhhccCCcEEEEeeChHH-HHHHHHH-
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEH--LGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIME- 134 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IV-agVdP~~~G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~e- 134 (181)
||.++|. |+||+...+.+.+.|+++. ...+|.. +.. .|..+..+..|+.+ ++|++++++|... +.+++..
T Consensus 2 ~Ig~IGl-G~MG~~ma~~L~~~G~~v~v~~~~~~~--~~~~~~g~~~~~s~~~~~~--~advVi~~v~~~~~v~~v~~~~ 76 (292)
T PRK15059 2 KLGFIGL-GIMGTPMAINLARAGHQLHVTTIGPVA--DELLSLGAVSVETARQVTE--ASDIIFIMVPDTPQVEEVLFGE 76 (292)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCCeEEEEeCCHhH--HHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCC
Confidence 6999999 9999999999999898864 3445532 112 46777888888877 8999999999873 3444321
Q ss_pred --HHHcCC--CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 135 --AMEAEL--DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 135 --aie~GI--k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++..-- +.||. ++..+..+..++.+.++...+
T Consensus 77 ~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~ 112 (292)
T PRK15059 77 NGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGG 112 (292)
T ss_pred cchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCC
Confidence 222211 23444 777888888888888765443
No 80
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.50 E-value=0.00028 Score=60.71 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=71.6
Q ss_pred EEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhccCCcEEEEeeCh-HHHHHHH---HHH
Q 030220 63 CQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAI---MEA 135 (181)
Q Consensus 63 VvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp-~~a~~~~---~ea 135 (181)
++|. |.||....+.+.+.|+++. ..|+.... +. -.|..+.++.+++.+ ++|++++++|+ ..+.+++ +..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v~~g~~~l 76 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGHPVR-VFDLFPDAVEEAVAAGAQAAASPAEAAE--GADRVITMLPAGQHVISVYSGDEGI 76 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCcchH
Confidence 4688 9999999999999898865 44544311 01 136777889999888 79999999998 4456665 344
Q ss_pred HHcCC-CEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 136 MEAEL-DLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 136 ie~GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.+.-- ..+++-+++++.+...++.+.+++..+.
T Consensus 77 ~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~ 110 (288)
T TIGR01692 77 LPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV 110 (288)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 43322 2244447799999999999888765443
No 81
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=97.49 E-value=0.00021 Score=63.48 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=62.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecC-CCCCCeEEc---Cccccc------------cHH-HHhhccCCcEEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGTEHL---GLPVFN------------SVA-EAKAETKANASV 120 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd-P~~~G~ei~---GvPVy~------------sl~-e~~~~~~~DVaI 120 (181)
+||+|+|++|.+|+.+.+.+.+. ++++++.++ ....|+.+. ....|+ +++ +.. .++|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS--KDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh--ccCCEEE
Confidence 47999999999999999988885 589887754 222333221 111111 111 222 3799999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
+++|+....+.++++.++|++.|.. +.-|
T Consensus 79 ~a~p~~~s~~~~~~~~~~G~~VIDl-sg~f 107 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAEAGKPVFSN-ASNH 107 (341)
T ss_pred EeCCHHHHHHHHHHHHHCCCEEEEC-Chhh
Confidence 9999999999999999999997665 5443
No 82
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.49 E-value=0.00093 Score=55.39 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--------E--cCcc--cc-ccHHHHhhccCCcEEEEeeC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--------H--LGLP--VF-NSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--------i--~GvP--Vy-~sl~e~~~~~~~DVaIdfVP 124 (181)
+||.|+|++|+||+...+.+.+.|.+++. .++.... .. + .|+. +. .+..+..+ ++|++|+++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v-~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~--~aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIII-GSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK--RADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEE-EEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh--cCCEEEEECC
Confidence 47999986699999999999988888653 2432210 00 0 1221 22 25566666 7899999999
Q ss_pred hHHHHHHHHHHHHc--CCCEEEEeCCCCCH
Q 030220 125 PPFAAAAIMEAMEA--ELDLVVCITEGIPQ 152 (181)
Q Consensus 125 p~~a~~~~~eaie~--GIk~IV~iTtG~~~ 152 (181)
+....++++++... + +.|+-++-|++.
T Consensus 78 ~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~ 106 (219)
T TIGR01915 78 WDHVLKTLESLRDELSG-KLVISPVVPLAS 106 (219)
T ss_pred HHHHHHHHHHHHHhccC-CEEEEeccCcee
Confidence 99999998876432 4 778877889886
No 83
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.48 E-value=0.00017 Score=67.48 Aligned_cols=92 Identities=12% Similarity=0.215 Sum_probs=71.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-----CCCeEE---cCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-----KGGTEH---LGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-----~~G~ei---~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
..+|+|+|+ |.+|+.+..++...|.+++-++-++ ..+.+. .|+++ .+++|+.+ +.|++++.+|... +
T Consensus 36 gKtIaIIGy-GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~--~ADvVviLlPDt~-q 110 (487)
T PRK05225 36 GKKIVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIP--QADLVINLTPDKQ-H 110 (487)
T ss_pred CCEEEEEcc-CHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHH--hCCEEEEcCChHH-H
Confidence 477999999 9999999999999999988665443 212122 58887 57899888 8999999999994 7
Q ss_pred HHHHHHHHcCCC--EEEEeCCCCCHHH
Q 030220 130 AAIMEAMEAELD--LVVCITEGIPQHD 154 (181)
Q Consensus 130 ~~~~eaie~GIk--~IV~iTtG~~~ed 154 (181)
..+.+-+....| .+++|+-||..+.
T Consensus 111 ~~v~~~i~p~LK~Ga~L~fsHGFni~~ 137 (487)
T PRK05225 111 SDVVRAVQPLMKQGAALGYSHGFNIVE 137 (487)
T ss_pred HHHHHHHHhhCCCCCEEEecCCceeee
Confidence 777766666554 4899999999764
No 84
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.46 E-value=0.00044 Score=59.32 Aligned_cols=99 Identities=10% Similarity=0.063 Sum_probs=67.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-EE--cC-ccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH--LG-LPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-ei--~G-vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
++|.|+|. |.||......+.+.|.+|. ++|+..... .. .| +....+..+..+ ++|++|+++|+..+.+.+++
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~~~~--~aDlVilavp~~~~~~~~~~ 76 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGHTVY-GVSRRESTCERAIERGLVDEASTDLSLLK--DCDLVILALPIGLLLPPSEQ 76 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCcccccCCHhHhc--CCCEEEEcCCHHHHHHHHHH
Confidence 36999998 9999999999988888865 556543210 11 12 222322224444 79999999999999999888
Q ss_pred HHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 135 AMEA-ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
.... .-..+|.-+.+++.+....+.+.
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~ 104 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWEKL 104 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHHHh
Confidence 7765 33345554777887777766654
No 85
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00042 Score=62.65 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=73.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc-------C---ccccc-cHHHHhhccCCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G---LPVFN-SVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~-------G---vPVy~-sl~e~~~~~~~DVaIdfVPp 125 (181)
+.||.|+|++|--|-.+.+.+... +.++......+..|+.+. | ++... +.+++ ...++|++++++|.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlalPh 80 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLALPH 80 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh-hcccCCEEEEecCc
Confidence 578999999999999999999885 888665544443443321 1 12221 23333 33369999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
..+.+.+.+.++.|++ |+-.++-|..+|...-+++
T Consensus 81 g~s~~~v~~l~~~g~~-VIDLSadfR~~d~~~ye~~ 115 (349)
T COG0002 81 GVSAELVPELLEAGCK-VIDLSADFRLKDPEVYEKW 115 (349)
T ss_pred hhHHHHHHHHHhCCCe-EEECCcccccCCHHHHHHh
Confidence 9999999999999999 6666888887766555444
No 86
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.44 E-value=0.00022 Score=64.08 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=78.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEe-eecCCC--------CCCeE-E------cCccccccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPK--------KGGTE-H------LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IV-agVdP~--------~~G~e-i------~GvPVy~sl~e~~~~~~~DVaId 121 (181)
+++|.|+|+ |.+|++..+.+.+.|.++. .+-||. +.... + .++...++++++.+ ++|++++
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~--~ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD--GADIIVI 77 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh--cCCEEEE
Confidence 368999999 9999999999999876643 243221 11111 1 24666778999988 7999999
Q ss_pred eeChHHHHHHHHHHH---HcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 122 YVPPPFAAAAIMEAM---EAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 122 fVPp~~a~~~~~eai---e~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.+|..+..++++..- ..+.+.|++ |-||-.+....+-|..+++
T Consensus 78 avPs~~~r~v~~~l~~~l~~~~~iv~~-sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 78 AVPSQALREVLRQLKPLLLKDAIIVSA-TKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred ECChHHHHHHHHHHhhhccCCCeEEEE-eccccCCCcchHHHHHHHH
Confidence 999999999999863 567777777 9999988877777776544
No 87
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.44 E-value=0.00049 Score=61.59 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=64.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCeEE--cC--ccccc-cHHHHhhccCCcEEEEeeChHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEH--LG--LPVFN-SVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~ei--~G--vPVy~-sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
++.||+|+|+||..|++..+.+.+. ..++++..+.+..|+.+ .| +++-+ +..+ .+ ++|+++.++|+..+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~--~vD~vFla~p~~~s 79 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FS--QVQLAFFAAGAAVS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hc--CCCEEEEcCCHHHH
Confidence 4578999999999999999999964 45566556665556433 22 22221 2222 24 79999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCC
Q 030220 129 AAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~ 150 (181)
.+.+.++.++|++.| -.+.-|
T Consensus 80 ~~~v~~~~~~G~~VI-DlS~~f 100 (336)
T PRK05671 80 RSFAEKARAAGCSVI-DLSGAL 100 (336)
T ss_pred HHHHHHHHHCCCeEE-ECchhh
Confidence 999999999998755 335444
No 88
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=97.43 E-value=0.00059 Score=62.15 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=67.0
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEeeecC--CCCCCeEEcCcccccc---HHHHhhccCCcEEEEeeChH---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVT--PKKGGTEHLGLPVFNS---VAEAKAETKANASVIYVPPP--- 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVd--P~~~G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp~--- 126 (181)
..+|+|+|+ |..|....+.+.+ +|++++|-+| +.+.++. .|+||+.+ +.+..+++++|.+++..|..
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~ 205 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAED 205 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHH
Confidence 367999999 9999988888765 3799999876 3443434 89999986 55556678999999999874
Q ss_pred HHHHHHHHHHHcCCCEEEE
Q 030220 127 FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~ 145 (181)
...+.++.|-+.|++..+.
T Consensus 206 ~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 206 RILELLDALEDLTVDVRLV 224 (451)
T ss_pred HHHHHHHHHHhcCCEEEEe
Confidence 4567788888889887665
No 89
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.43 E-value=0.00029 Score=62.43 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=65.7
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC---------------CeEE-cCccccccHHHHhhccCCcEE
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG---------------GTEH-LGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~---------------G~ei-~GvPVy~sl~e~~~~~~~DVa 119 (181)
+.++||.|+|+ |.||......+.+.|..++...++... +..+ ..+.+.++++++.+ ++|++
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~--~aDlV 81 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN--CADVV 81 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh--cCCEE
Confidence 44688999999 999999999888877333333332210 0001 12345557777776 78999
Q ss_pred EEeeChHHHHHHHHHHHHc-CC-CEEEEeCCCCCHH
Q 030220 120 VIYVPPPFAAAAIMEAMEA-EL-DLVVCITEGIPQH 153 (181)
Q Consensus 120 IdfVPp~~a~~~~~eaie~-GI-k~IV~iTtG~~~e 153 (181)
+++||+....++++++... +- ..++.++-|+...
T Consensus 82 ilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 82 VMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred EEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 9999999999999988754 22 2477778999864
No 90
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.42 E-value=0.00052 Score=60.89 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC---CeEeeecCCCCCCeEE--cC--ccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGTEH--LG--LPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g---~~IVagVdP~~~G~ei--~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+||+|+|+||..|+..++.+.+.| +++++.......|+++ .| +++.+.-.+..+ ++|+++.++|...+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~--~vDvVf~A~g~g~s~~~ 79 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFS--GVDIALFSAGGSVSKKY 79 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHc--CCCEEEECCChHHHHHH
Confidence 589999999999999999998844 4667665554445443 22 333321112233 79999999999999999
Q ss_pred HHHHHHcCCCEEE
Q 030220 132 IMEAMEAELDLVV 144 (181)
Q Consensus 132 ~~eaie~GIk~IV 144 (181)
+..++++|. .||
T Consensus 80 ~~~~~~~G~-~VI 91 (334)
T PRK14874 80 APKAAAAGA-VVI 91 (334)
T ss_pred HHHHHhCCC-EEE
Confidence 999999998 344
No 91
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.41 E-value=0.0003 Score=63.16 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=67.3
Q ss_pred EEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCC--------------------eE--EcCccccccHHHHhhccCCc
Q 030220 61 VICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG--------------------TE--HLGLPVFNSVAEAKAETKAN 117 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G--------------------~e--i~GvPVy~sl~e~~~~~~~D 117 (181)
|+|.|+ |++|+.+++.+.+ .++++|+..|+.... .+ -.|++++.+++++++ ++|
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~vD 77 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--KVD 77 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh--cCC
Confidence 579999 9999999998776 589999876633210 00 135788889999986 799
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 118 ASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++++|........+..++.|.+.|+.
T Consensus 78 iVve~Tp~~~~~~na~~~~~~GakaVl~ 105 (333)
T TIGR01546 78 IVVDATPGGIGAKNKPLYEKAGVKAIFQ 105 (333)
T ss_pred EEEECCCCCCChhhHHHHHhCCcCEEEE
Confidence 9999999999999999999999999987
No 92
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.39 E-value=0.001 Score=60.97 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=75.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-CeEee-ecCCCCCC---------eEE--cCccccccHHHHhhccCCcEEEEeeC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVG-GVTPKKGG---------TEH--LGLPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~~IVa-gVdP~~~G---------~ei--~GvPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
++||+|+|+ |+.|+.++..+.+.+ .+|.. +-++.+.. -+- .++-=.+.+.++++ +.|++|...|
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~--~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK--DFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--cCCEEEEeCC
Confidence 468999999 999999999888864 88553 32221111 011 12222335788888 6699999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
+.....+++.|++.|++-+-. |..-+. ..++.+.+++-++.
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDt-s~~~~~--~~~~~~~a~~Agit 118 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDT-SYYEEP--PWKLDEEAKKAGIT 118 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEc-ccCCch--hhhhhHHHHHcCeE
Confidence 999999999999999998765 555444 37788888776654
No 93
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.39 E-value=0.00027 Score=62.87 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=68.5
Q ss_pred EEEEccCCCCcchhhHHHHHh-CC-e-EeeecCCCC--------CCe--EEcCccccc--cHHHHhhccCCcEEEEeeCh
Q 030220 61 VICQGITGKNGTFHTEQAIEY-GT-K-MVGGVTPKK--------GGT--EHLGLPVFN--SVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~-g~-~-IVagVdP~~--------~G~--ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp 125 (181)
|+|+|+ |.+|+.+++.+.+. ++ + ++++-|+.+ .+. +..-+-+.+ +++++++ ++|++|.++||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--GCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT--TSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh--cCCEEEECCcc
Confidence 789999 99999999998886 45 5 455555443 111 111122333 4777777 78999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.....+++.|+++|++-|= +.+-.+++.++.+.+++-.+
T Consensus 78 ~~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g~ 116 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAGV 116 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTTS
T ss_pred chhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhCC
Confidence 9999999999999998554 44467788888888875444
No 94
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.38 E-value=0.00063 Score=53.81 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=60.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCC--------------CCeEE-cCccccccHHHHhhccCCcEEEEee
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKK--------------GGTEH-LGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~--------------~G~ei-~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
||.|+|+ |++|++.+..+.+.|.++.- .-++.. .+.++ ..+.+.++++++++ +.|++|+.+
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~--~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE--DADIIIIAV 77 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT--T-SEEEE-S
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC--cccEEEecc
Confidence 6999999 99999999999888866442 222110 00011 24567778999998 899999999
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEeCCCC
Q 030220 124 PPPFAAAAIMEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 124 Pp~~a~~~~~eaie~--GIk~IV~iTtG~ 150 (181)
|..+..+.++++... .-..++..+-||
T Consensus 78 Ps~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999988763 334455558898
No 95
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=97.37 E-value=0.00072 Score=61.50 Aligned_cols=87 Identities=20% Similarity=0.299 Sum_probs=67.5
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCCC-CeEEcCcccccc---HHHHhhccCCcEEEEeeChHH---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKG-GTEHLGLPVFNS---VAEAKAETKANASVIYVPPPF--- 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~~-G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp~~--- 127 (181)
..|++|+|+ |..|..+.+.+.+ .|++++|-+|++.. +..+.|+||+.+ +.++.+++++|.+++..|...
T Consensus 125 ~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~~ 203 (445)
T TIGR03025 125 LRRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEAR 203 (445)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHHH
Confidence 467999999 9999998888765 37999998875432 235789999986 455566778999999988643
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 030220 128 AAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~ 145 (181)
..+.+++|.+.|++..+.
T Consensus 204 ~~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 204 ILELLLQLRDLGVDVRLV 221 (445)
T ss_pred HHHHHHHHHhcCCEEEEe
Confidence 457888999999987665
No 96
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.34 E-value=0.00095 Score=57.91 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=68.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM- 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~- 133 (181)
++|.|+|. |+||....+.+.+.|+++. ..|+.... ++. .|.....+..++.+ ++|++++++|+.. +.+++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~~V~-v~d~~~~~~~~~~~~g~~~~~s~~~~~~--~aDvVi~~vp~~~~~~~vl~~ 77 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGHQLQ-VFDVNPQAVDALVDKGATPAASPAQAAA--GAEFVITMLPNGDLVRSVLFG 77 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcC
Confidence 47999999 9999999999998898865 45554321 111 36667788888877 7899999999986 444432
Q ss_pred --HHHHcCC---CEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 134 --EAMEAEL---DLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 134 --eaie~GI---k~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
..++ ++ +.++..+|+ +.++..++.+..++..
T Consensus 78 ~~~i~~-~l~~g~lvid~sT~-~p~~~~~l~~~l~~~g 113 (296)
T PRK15461 78 ENGVCE-GLSRDALVIDMSTI-HPLQTDKLIADMQAKG 113 (296)
T ss_pred cccHhh-cCCCCCEEEECCCC-CHHHHHHHHHHHHHcC
Confidence 1222 22 245664555 5566666666665443
No 97
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.33 E-value=0.00059 Score=59.00 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=63.5
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-EE-------cC--------------ccccccHHHHhhc
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH-------LG--------------LPVFNSVAEAKAE 113 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-ei-------~G--------------vPVy~sl~e~~~~ 113 (181)
++.++|.|+|+ |.||..+...+.+.|++++. +|+..... .. .| +...++.++..+
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 78 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGLQVVL-IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS- 78 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCCeEEE-EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc-
Confidence 34578999999 99999999999888988663 44432110 00 01 223456777666
Q ss_pred cCCcEEEEeeChHH--HHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHH
Q 030220 114 TKANASVIYVPPPF--AAAAIMEAMEA--ELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 114 ~~~DVaIdfVPp~~--a~~~~~eaie~--GIk~IV~iTtG~~~ed~~~l 158 (181)
++|++|+++|+.. ..++..++-.. +-..|+..|.|++.+++.+.
T Consensus 79 -~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~ 126 (311)
T PRK06130 79 -GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQA 126 (311)
T ss_pred -cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhh
Confidence 7999999999875 34455443331 11234456889987655543
No 98
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.33 E-value=0.0012 Score=55.65 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=58.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe-EEcCccc-cc---cHHHHhhc----cC-CcEEEEeeCh---
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-EHLGLPV-FN---SVAEAKAE----TK-ANASVIYVPP--- 125 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~-ei~GvPV-y~---sl~e~~~~----~~-~DVaIdfVPp--- 125 (181)
+|+|.|+||+.|+.+++.+.+.|.++.+.+- |.+... .+..+++ |. ++.++.+. .. +|.++...|+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~ 80 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD 80 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCC
Confidence 4899999999999999999999999887643 432110 1111111 12 34455421 14 7888777663
Q ss_pred --HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 --PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 --~~a~~~~~eaie~GIk~IV~iT 147 (181)
......++.|.++|++.+|..+
T Consensus 81 ~~~~~~~~i~aa~~~gv~~~V~~S 104 (285)
T TIGR03649 81 LAPPMIKFIDFARSKGVRRFVLLS 104 (285)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEee
Confidence 4566788889999999988754
No 99
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.32 E-value=0.00048 Score=57.45 Aligned_cols=51 Identities=22% Similarity=0.147 Sum_probs=40.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+||.|+|++|+||+..++.+.+.|+.+. +. ++|++|+++|.....+.+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~--~~DlVilavPv~~~~~~i~~~ 51 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IK--KADHAFLSVPIDAALNYIESY 51 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE------------------------EC--CCCEEEEeCCHHHHHHHHHHh
Confidence 4799999999999999999999998864 12 567777777777776666654
No 100
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=97.30 E-value=0.0012 Score=61.44 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=63.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCeEEcCccccccHHH---HhhccCCcEEEEeeChH---HHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHLGLPVFNSVAE---AKAETKANASVIYVPPP---FAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~ei~GvPVy~sl~e---~~~~~~~DVaIdfVPp~---~a~ 129 (181)
.+++|+|+ |..|+.+++.+.+. |++++|-+|.+..+.++.|+||+.+.++ ..+++.+|+ ++.+|.. .-.
T Consensus 147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r~ 224 (476)
T PRK15204 147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKTH 224 (476)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHHH
Confidence 57999999 99999999887763 8999999986654456889999987553 344446776 7778733 455
Q ss_pred HHHHHHHHcCCCEEE
Q 030220 130 AAIMEAMEAELDLVV 144 (181)
Q Consensus 130 ~~~~eaie~GIk~IV 144 (181)
+.++++.+.|++.|.
T Consensus 225 ~il~~l~~~gv~~V~ 239 (476)
T PRK15204 225 FWLRELSKHHCRSVT 239 (476)
T ss_pred HHHHHHhhcCCeEEE
Confidence 788889888987443
No 101
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.30 E-value=0.00052 Score=60.89 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=66.3
Q ss_pred ceEEEEccCCCCcchhhHHH-HHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH--HHH
Q 030220 59 TRVICQGITGKNGTFHTEQA-IEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI--MEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~-~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~--~ea 135 (181)
++|.|+|+ |++|+.+.+.+ ...|++|+ +.||......-.++....+++++++ ++|++++.+|.......+ ++.
T Consensus 147 ~~VgIIG~-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~l~ell~--~aDvIvl~lP~t~~t~~li~~~~ 222 (332)
T PRK08605 147 LKVAVIGT-GRIGLAVAKIFAKGYGSDVV-AYDPFPNAKAATYVDYKDTIEEAVE--GADIVTLHMPATKYNHYLFNADL 222 (332)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCccHhHHhhccccCCHHHHHH--hCCEEEEeCCCCcchhhhcCHHH
Confidence 57999999 99999999988 44688877 5676542211123444458999988 799999999976655544 222
Q ss_pred H---HcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 136 M---EAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 136 i---e~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+ +.|. .+|+.+.|..+.+ ..|.++.+.
T Consensus 223 l~~mk~ga-ilIN~sRG~~vd~-~aL~~aL~~ 252 (332)
T PRK08605 223 FKHFKKGA-VFVNCARGSLVDT-KALLDALDN 252 (332)
T ss_pred HhcCCCCc-EEEECCCCcccCH-HHHHHHHHh
Confidence 2 3332 5777677766644 444444443
No 102
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.30 E-value=0.0024 Score=57.60 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=65.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
..+|+|+|+.|.||+...+.+.+.|+++. ++|+.. ..+.+++.+ ++|++|+++|.....+.+++...
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~--~aDlVilavP~~~~~~~~~~l~~ 164 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVR-ILEQDD----------WDRAEDILA--DAGMVIVSVPIHLTEEVIARLPP 164 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEE-EeCCCc----------chhHHHHHh--cCCEEEEeCcHHHHHHHHHHHhC
Confidence 36799999669999999999999998865 555432 135667766 79999999999999999988655
Q ss_pred cCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 138 AELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 138 ~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
..-..||.=.+.+...-+..+.+.
T Consensus 165 l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 165 LPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred CCCCcEEEECCCccHHHHHHHHHh
Confidence 333345543455545555555554
No 103
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=97.29 E-value=0.00092 Score=61.00 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=63.7
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCC--CCCeEEcCcccccc--HHHHhhccCCcEEEEeeC---hHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPK--KGGTEHLGLPVFNS--VAEAKAETKANASVIYVP---PPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~--~~G~ei~GvPVy~s--l~e~~~~~~~DVaIdfVP---p~~ 127 (181)
..+++|+|+ |..|..+.+.+.+ .|++++|-+|.+ ..+.++.|+||+.+ +.+..+++++|.+++..| ++.
T Consensus 125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~~~l~~~i~~~~id~ViIAip~~~~~~ 203 (456)
T TIGR03022 125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGADDALRLYARTRYAYVIVAMPGTQAED 203 (456)
T ss_pred CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccChhHHHHHHHhCCCCEEEEecCCccHHH
Confidence 367999999 9999988888764 389999988744 34456789999975 445566678998999888 455
Q ss_pred HHHHHHHHHHcCC
Q 030220 128 AAAAIMEAMEAEL 140 (181)
Q Consensus 128 a~~~~~eaie~GI 140 (181)
..+.++.|.+.|+
T Consensus 204 ~~~ll~~l~~~~v 216 (456)
T TIGR03022 204 MARLVRKLGALHF 216 (456)
T ss_pred HHHHHHHHHhCCC
Confidence 6778888888888
No 104
>PLN00016 RNA-binding protein; Provisional
Probab=97.24 E-value=0.0015 Score=57.88 Aligned_cols=89 Identities=12% Similarity=0.024 Sum_probs=60.0
Q ss_pred ceEEEE----ccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-----------E--EcCcccc-ccHH---HHhhccCCc
Q 030220 59 TRVICQ----GITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-----------E--HLGLPVF-NSVA---EAKAETKAN 117 (181)
Q Consensus 59 ~rViVv----GatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-----------e--i~GvPVy-~sl~---e~~~~~~~D 117 (181)
++|+|. |+||..|+.+++.+.+.|.+|.+......... + ..|+.++ .++. +++...++|
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~~d 132 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAGFD 132 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCCcc
Confidence 679999 99999999999999999999886543221100 0 0133332 3443 444334799
Q ss_pred EEEEeeC--hHHHHHHHHHHHHcCCCEEEEeC
Q 030220 118 ASVIYVP--PPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 118 VaIdfVP--p~~a~~~~~eaie~GIk~IV~iT 147 (181)
++|.+.. ...++.+++.|.++|++.+|.++
T Consensus 133 ~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S 164 (378)
T PLN00016 133 VVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS 164 (378)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 9998753 34567778888889998776545
No 105
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.23 E-value=0.0011 Score=59.62 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=66.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHH--h-CCeEeeecCCCCCCeEE--c--CccccccHHHHh-hccCCcEEEEeeChHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE--Y-GTKMVGGVTPKKGGTEH--L--GLPVFNSVAEAK-AETKANASVIYVPPPFA 128 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~--~-g~~IVagVdP~~~G~ei--~--GvPVy~sl~e~~-~~~~~DVaIdfVPp~~a 128 (181)
...||+|+|+||--|+...+.+.+ . .++++...+.+..|+.+ . .+++. ++++.. + ++|+++.++|+..+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~--~~Dvvf~a~p~~~s 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWS--QAQLAFFVAGREAS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhcc--CCCEEEECCCHHHH
Confidence 457899999999999999999998 3 67777655555555444 1 24444 445432 3 79999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCC
Q 030220 129 AAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~ 150 (181)
.+.+.++.++|++.|=. +.-|
T Consensus 80 ~~~~~~~~~~g~~VIDl-S~~f 100 (336)
T PRK08040 80 AAYAEEATNAGCLVIDS-SGLF 100 (336)
T ss_pred HHHHHHHHHCCCEEEEC-ChHh
Confidence 99999999999975533 5444
No 106
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.23 E-value=0.0012 Score=60.70 Aligned_cols=102 Identities=21% Similarity=0.239 Sum_probs=69.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
++|.|+|++|.||+...+.+.+.|.++.+ +.++..... .-.|+.+.++.++..+ ++|++|+++|+....++++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~--~aDvVIlavp~~~~~~vl~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAK--DADIVIISVPINVTEDVIKEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhc--cCCEEEEecCHHHHHHHHHHH
Confidence 47999997799999999999998888653 333332100 1136666667888776 799999999999999988887
Q ss_pred HHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 136 MEA-ELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 136 ie~-GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
... .-..++.-.+.+...-...+.+..
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~ 106 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYA 106 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhc
Confidence 654 222233324445555555665554
No 107
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.0011 Score=63.39 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=70.8
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh-CCeEeeecC--CCCCCeEEcCcccccc--HHHHhhccCCcEEEEeeC---hHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT--PKKGGTEHLGLPVFNS--VAEAKAETKANASVIYVP---PPF 127 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd--P~~~G~ei~GvPVy~s--l~e~~~~~~~DVaIdfVP---p~~ 127 (181)
...++++|+|+ |.-|....+.+... .+.+||.+| |.+.|+++.|+|||.. ++++.++.++|-+++..| .+.
T Consensus 114 ~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~ 192 (588)
T COG1086 114 DNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEE 192 (588)
T ss_pred cCCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCChhhcCCEEeceeeechhHHHHHHHHcCCceEEEecCCCCHHH
Confidence 44588999999 99999999988884 799999888 6677889999999995 667777788887777776 466
Q ss_pred HHHHHHHHHHcCCCEE
Q 030220 128 AAAAIMEAMEAELDLV 143 (181)
Q Consensus 128 a~~~~~eaie~GIk~I 143 (181)
.++..+.|-+.|++.=
T Consensus 193 ~~~i~~~l~~~~~~v~ 208 (588)
T COG1086 193 RRRILLRLARTGIAVR 208 (588)
T ss_pred HHHHHHHHHhcCCcEE
Confidence 7788888888886553
No 108
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=97.23 E-value=0.00097 Score=59.58 Aligned_cols=85 Identities=15% Similarity=0.066 Sum_probs=65.2
Q ss_pred eEEEEccCCCCcchhhHHHHHh----CCeEeeecCCCCC-----------------------CeE--EcC--ccccc--c
Q 030220 60 RVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKG-----------------------GTE--HLG--LPVFN--S 106 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~----g~~IVagVdP~~~-----------------------G~e--i~G--vPVy~--s 106 (181)
||+|.|+ |+.|+.+.+.+.+. +++|++..|.... |+. +.| ++++. +
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 5899999 99999999998875 4899986553221 111 122 56664 5
Q ss_pred HHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 l~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++++ .+.++|+++.++++....+.+..++++|.+.|++
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~ 119 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLF 119 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEe
Confidence 66654 3458999999999999999999999999999888
No 109
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=97.23 E-value=0.00091 Score=53.36 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=60.7
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe--------EE-----------------cC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT--------EH-----------------LG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~--------ei-----------------~G--vPVy~--sl~ 108 (181)
.||+|+|+ |+||+.+.+.+.+ .++++++..|+..... .. .| ++++. +.+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence 47999999 9999999998876 5999999877521110 01 11 12222 344
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++ .+.++|++|+++-.-...+.+..-+++|.|.|+.
T Consensus 80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence 443 3457899999977767777777888899999988
No 110
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.22 E-value=0.0014 Score=58.86 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=60.9
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhC---CeEeeecCCCCCCeEE--cCc-cccccHH-HHhhccCCcEEEEeeChHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGTEH--LGL-PVFNSVA-EAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g---~~IVagVdP~~~G~ei--~Gv-PVy~sl~-e~~~~~~~DVaIdfVPp~~a 128 (181)
+...||+|+|+||.-|+...+.+.+.+ ++++........|+.+ .|. .++.+++ +..+ ++|+++.++|...+
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~--~~D~vf~a~p~~~s 82 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFD--GVDIALFSAGGSIS 82 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHc--CCCEEEECCCcHHH
Confidence 445789999999999999999998844 4555443444444333 221 2222222 3334 79999999999999
Q ss_pred HHHHHHHHHcCCCEE
Q 030220 129 AAAIMEAMEAELDLV 143 (181)
Q Consensus 129 ~~~~~eaie~GIk~I 143 (181)
.+.+.++.++|++.|
T Consensus 83 ~~~~~~~~~~g~~VI 97 (344)
T PLN02383 83 KKFGPIAVDKGAVVV 97 (344)
T ss_pred HHHHHHHHhCCCEEE
Confidence 999999999998755
No 111
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.21 E-value=0.0015 Score=59.23 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=66.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-------Ce-EeeecCCCCC-------------CeE-EcC------ccccccHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-------TK-MVGGVTPKKG-------------GTE-HLG------LPVFNSVAE 109 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-------~~-IVagVdP~~~-------------G~e-i~G------vPVy~sl~e 109 (181)
.+||.|+|+ |.+|++++..+.+.+ .+ ...+-|+... ... +.| +.+.+++++
T Consensus 11 ~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 11 PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 368999999 999999999887765 34 2334444210 000 123 334567888
Q ss_pred HhhccCCcEEEEeeChHHHHHHHHHHHH--c--CCCEEEEeCCCCCHHH
Q 030220 110 AKAETKANASVIYVPPPFAAAAIMEAME--A--ELDLVVCITEGIPQHD 154 (181)
Q Consensus 110 ~~~~~~~DVaIdfVPp~~a~~~~~eaie--~--GIk~IV~iTtG~~~ed 154 (181)
+++ +.|++|+.||+....++++++-. . .-..+|.++.|+..++
T Consensus 90 av~--~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 90 AVE--DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HHh--cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCC
Confidence 887 89999999999999999999875 2 1225776799998655
No 112
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.21 E-value=0.0013 Score=58.61 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=70.1
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEe-eecCCCCCCe-EEcCccc----cccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGT-EHLGLPV----FNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IV-agVdP~~~G~-ei~GvPV----y~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
+|.|+|. |.||..+.+.+.+.|.++. .+.|+..... .-.++.+ ..+++++.+ ++|++|+++|+....++++
T Consensus 2 ~I~iIG~-GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~aDlVilavP~~~~~~vl~ 78 (359)
T PRK06545 2 TVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAA--EADLIVLAVPVDATAALLA 78 (359)
T ss_pred eEEEEEe-CHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhc--CCCEEEEeCCHHHHHHHHH
Confidence 6899999 9999999999999887643 3566654210 0112322 245677766 7999999999999999988
Q ss_pred HHHHc--CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 134 EAMEA--ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
+.... .-..+|.-..+++.+-...+.+.
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 88752 23345555788888777777665
No 113
>PLN02712 arogenate dehydrogenase
Probab=97.21 E-value=0.00087 Score=64.97 Aligned_cols=78 Identities=12% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+.++|.|+|+ |+||+.+.+.+.+.|.+|+ ++|+..... .-.|+..+.+++++.+. ++|+++++||+....+++++
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~a~~~Gv~~~~~~~el~~~-~aDvVILavP~~~~~~vi~~ 444 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQGHTVL-AYSRSDYSDEAQKLGVSYFSDADDLCEE-HPEVILLCTSILSTEKVLKS 444 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHcCCeEeCCHHHHHhc-CCCEEEECCChHHHHHHHHH
Confidence 4578999997 9999999999998888877 556543211 11466677888887642 48999999999999999988
Q ss_pred HHH
Q 030220 135 AME 137 (181)
Q Consensus 135 aie 137 (181)
...
T Consensus 445 l~~ 447 (667)
T PLN02712 445 LPF 447 (667)
T ss_pred HHH
Confidence 764
No 114
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=97.21 E-value=0.00079 Score=60.09 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=56.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCe---EeeecCCCCCCeEE--cC--ccccc-cHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEH--LG--LPVFN-SVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~---IVagVdP~~~G~ei--~G--vPVy~-sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
||+|+|+||..|+..++.+.+.++. ++........|+.+ .| +.+.+ +.++ .+ ++|+++.++|...+.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~-~~--~~D~v~~a~g~~~s~~~ 77 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIES-FE--GIDIALFSAGGSVSKEF 77 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHH-hc--CCCEEEECCCHHHHHHH
Confidence 5899999999999999998886555 33222333334333 22 22222 2222 34 79999999999999999
Q ss_pred HHHHHHcCCC
Q 030220 132 IMEAMEAELD 141 (181)
Q Consensus 132 ~~eaie~GIk 141 (181)
+..++++|++
T Consensus 78 a~~~~~~G~~ 87 (339)
T TIGR01296 78 APKAAKCGAI 87 (339)
T ss_pred HHHHHHCCCE
Confidence 9999999985
No 115
>PRK07574 formate dehydrogenase; Provisional
Probab=97.18 E-value=0.0023 Score=58.39 Aligned_cols=104 Identities=16% Similarity=0.086 Sum_probs=70.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChHHH-HHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a-~~~~~e 134 (181)
++|.|+|+ |++|+.+.+.+...|++|. +.|+.....+ -.|+.-+.+++|+.+ ++|++++.+|-... ..++.+
T Consensus 193 ktVGIvG~-G~IG~~vA~~l~~fG~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~ 268 (385)
T PRK07574 193 MTVGIVGA-GRIGLAVLRRLKPFDVKLH-YTDRHRLPEEVEQELGLTYHVSFDSLVS--VCDVVTIHCPLHPETEHLFDA 268 (385)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCCchhhHhhcCceecCCHHHHhh--cCCEEEEcCCCCHHHHHHhCH
Confidence 56999999 9999999999999999987 5676531111 235655789999998 89999999994433 333322
Q ss_pred ----HHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 135 ----AMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 135 ----aie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.++.| ..+|+++-| ..-|...|.++.+.-.++
T Consensus 269 ~~l~~mk~g-a~lIN~aRG-~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 269 DVLSRMKRG-SYLVNTARG-KIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHhcCCCC-cEEEECCCC-chhhHHHHHHHHHhCCcc
Confidence 22223 246774554 444666777766555443
No 116
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.17 E-value=0.0024 Score=55.10 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=59.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC-eEEcCcccc-------ccHHHHhhccCCcEEEEeeCh----
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-TEHLGLPVF-------NSVAEAKAETKANASVIYVPP---- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G-~ei~GvPVy-------~sl~e~~~~~~~DVaIdfVPp---- 125 (181)
+||+|.|+||..|+.+++.+.+.|.+|.+.+- +.... ....|+.++ .++.++++ ++|+++.+++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~~ 78 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPSD 78 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCCC
Confidence 37999999999999999999999999887653 22110 001233322 24566666 78998887642
Q ss_pred ---------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ---------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ---------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
......++.|.++|++.+|.+++
T Consensus 79 ~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 79 LYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred ccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 12356677788899998877554
No 117
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.15 E-value=0.00085 Score=57.76 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=64.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--------------------------EcC-ccccccHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------HLG-LPVFNSVAEA 110 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--------------------------i~G-vPVy~sl~e~ 110 (181)
..+|.|+|+ |.||..++..+...|++++ .+|+.....+ ..+ +.+.++.+ .
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~ 80 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLE-E 80 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHH-H
Confidence 467999999 9999999999999999876 4444321100 001 22333444 4
Q ss_pred hhccCCcEEEEeeC--hHHHHHHHHHHHHc-CCCEEE-EeCCCCCHHHHHHHHH
Q 030220 111 KAETKANASVIYVP--PPFAAAAIMEAMEA-ELDLVV-CITEGIPQHDMVINFT 160 (181)
Q Consensus 111 ~~~~~~DVaIdfVP--p~~a~~~~~eaie~-GIk~IV-~iTtG~~~ed~~~l~~ 160 (181)
.+ ++|++|..+| ++.-+.+..++.+. .-..|+ ..|.+++..++.+...
T Consensus 81 ~~--~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~ 132 (295)
T PLN02545 81 LR--DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQ 132 (295)
T ss_pred hC--CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcC
Confidence 45 7999999999 77766666665543 222344 3589999887766543
No 118
>PLN03139 formate dehydrogenase; Provisional
Probab=97.12 E-value=0.0026 Score=58.15 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=69.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe---EEcCccccccHHHHhhccCCcEEEEeeChH-HHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~~ 133 (181)
..+|.|+|+ |++|+.+.+.+...|+++++ .|+..... ...|+..+.+++|+.. ++|++++.+|-. ....++.
T Consensus 199 gktVGIVG~-G~IG~~vA~~L~afG~~V~~-~d~~~~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~ 274 (386)
T PLN03139 199 GKTVGTVGA-GRIGRLLLQRLKPFNCNLLY-HDRLKMDPELEKETGAKFEEDLDAMLP--KCDVVVINTPLTEKTRGMFN 274 (386)
T ss_pred CCEEEEEee-cHHHHHHHHHHHHCCCEEEE-ECCCCcchhhHhhcCceecCCHHHHHh--hCCEEEEeCCCCHHHHHHhC
Confidence 356999999 99999999999999999874 67653111 1236666679999998 799999999943 3333332
Q ss_pred -HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 -EAMEA-ELD-LVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 -eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.++. +-. .+|+ |.-=..-|...|.++.+.-.+
T Consensus 275 ~~~l~~mk~ga~lIN-~aRG~iVDe~AL~~AL~sG~l 310 (386)
T PLN03139 275 KERIAKMKKGVLIVN-NARGAIMDTQAVADACSSGHI 310 (386)
T ss_pred HHHHhhCCCCeEEEE-CCCCchhhHHHHHHHHHcCCc
Confidence 22222 222 3566 544455577777777654444
No 119
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.09 E-value=0.0021 Score=55.95 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=63.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC----------CeE-E------cCccccccHHHHhhccCCcEEEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----------GTE-H------LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~----------G~e-i------~GvPVy~sl~e~~~~~~~DVaId 121 (181)
+||.|+|+ |.||......+.+.|.+|. .+++... +.. + .+++++.++++... .++|++++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~Dliii 77 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-DNATCIIL 77 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-CCCCEEEE
Confidence 36999999 9999999999988887754 4443210 101 1 13345667777652 26899999
Q ss_pred eeChHHHHHHHHHHHH-c-C-CCEEEEeCCCCCH
Q 030220 122 YVPPPFAAAAIMEAME-A-E-LDLVVCITEGIPQ 152 (181)
Q Consensus 122 fVPp~~a~~~~~eaie-~-G-Ik~IV~iTtG~~~ 152 (181)
+||+....++++++.. . + -..|+..+-|+..
T Consensus 78 avks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 78 AVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 9999999999998876 3 2 2246667999955
No 120
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.08 E-value=0.0038 Score=52.76 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=70.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCCe----EEcCccccc--cHHHHhhccCCcEEEEeeChHH----
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGT----EHLGLPVFN--SVAEAKAETKANASVIYVPPPF---- 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G~----ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~~---- 127 (181)
+||+|+|+||+-|+.+.+....+|-+++|.| ||.+... .+..--||+ ++++.+. ..|++|....+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~~~~~~~ 78 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGAGASDND 78 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhc--CCceEEEeccCCCCChh
Confidence 5899999999999999999999999999975 4666431 123334555 3556666 7899999876541
Q ss_pred -----HHHHHHHHHHc-CCCEEEEe----------------CCCCCHHHHHHHHHHhh
Q 030220 128 -----AAAAIMEAMEA-ELDLVVCI----------------TEGIPQHDMVINFTRVN 163 (181)
Q Consensus 128 -----a~~~~~eaie~-GIk~IV~i----------------TtG~~~ed~~~l~~~ak 163 (181)
+.+.+-.+++. |++..+.+ |..||++......+.++
T Consensus 79 ~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A~~~ae 136 (211)
T COG2910 79 ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEALAQAE 136 (211)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHHHHHHHHH
Confidence 12234455555 77764332 36788877766666665
No 121
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.08 E-value=0.0027 Score=59.26 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=67.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-----EEcC--ccccccHHHHhhcc-CCcEEEEeeChH-HH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-----EHLG--LPVFNSVAEAKAET-KANASVIYVPPP-FA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-----ei~G--vPVy~sl~e~~~~~-~~DVaIdfVPp~-~a 128 (181)
.+|.|+|. |.||+..+..+.+.|++|.. ..++.+... ...| +..+++++|+.+.. ++|++++++|+. .+
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 47999999 99999999999999998663 233332110 0114 33678999998642 589888886555 66
Q ss_pred HHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 129 AAAIMEAMEA---ELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 129 ~~~~~eaie~---GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.++++.+... | +.|+-.+++.+..-. ++.+..++..+-
T Consensus 81 ~~vi~~l~~~L~~g-~iIID~gn~~~~dt~-~r~~~l~~~Gi~ 121 (470)
T PTZ00142 81 DETIDNLLPLLEKG-DIIIDGGNEWYLNTE-RRIKRCEEKGIL 121 (470)
T ss_pred HHHHHHHHhhCCCC-CEEEECCCCCHHHHH-HHHHHHHHcCCe
Confidence 6666665543 3 345554555555444 444444444443
No 122
>PLN02712 arogenate dehydrogenase
Probab=97.07 E-value=0.0028 Score=61.48 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=59.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+.++|.|+|+ |+||+.+.+.+.+.|++|++ +|+..... .-.|+..+.+.+++..+ ++|+++++||+....+++++
T Consensus 51 ~~~kIgIIG~-G~mG~slA~~L~~~G~~V~~-~dr~~~~~~A~~~Gv~~~~d~~e~~~~-~aDvViLavP~~~~~~vl~~ 127 (667)
T PLN02712 51 TQLKIAIIGF-GNYGQFLAKTLISQGHTVLA-HSRSDHSLAARSLGVSFFLDPHDLCER-HPDVILLCTSIISTENVLKS 127 (667)
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHCCCEEEE-EeCCHHHHHHHHcCCEEeCCHHHHhhc-CCCEEEEcCCHHHHHHHHHh
Confidence 3468999998 99999999999998988764 55542111 12467778888886532 58999999999999998887
Q ss_pred HH
Q 030220 135 AM 136 (181)
Q Consensus 135 ai 136 (181)
..
T Consensus 128 l~ 129 (667)
T PLN02712 128 LP 129 (667)
T ss_pred hh
Confidence 64
No 123
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.07 E-value=0.0018 Score=58.43 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=63.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHH-hCCe---EeeecCCCCCCeEE--c--Cccccc-cHHHHhhccCCcEEEEeeChHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE-YGTK---MVGGVTPKKGGTEH--L--GLPVFN-SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~-~g~~---IVagVdP~~~G~ei--~--GvPVy~-sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+..||+|+|+||-.|+...+.+.+ .+|+ +....+.+..|+.+ . .+.+.+ +.+++ + ++|+++..+|.+.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~-~--~~Divf~a~~~~~ 80 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSF-E--GVDIAFFSAGGEV 80 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHh-c--CCCEEEECCChHH
Confidence 346899999999999999999995 6888 55455555555443 1 244443 33333 4 7999999999999
Q ss_pred HHHHHHHHHHcCCCEE
Q 030220 128 AAAAIMEAMEAELDLV 143 (181)
Q Consensus 128 a~~~~~eaie~GIk~I 143 (181)
+.+.+..+.++|.+.|
T Consensus 81 s~~~~~~~~~~G~~VI 96 (347)
T PRK06728 81 SRQFVNQAVSSGAIVI 96 (347)
T ss_pred HHHHHHHHHHCCCEEE
Confidence 9999999999997665
No 124
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.06 E-value=0.0013 Score=58.36 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=69.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-M 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~ 133 (181)
..+|.|+|+ |++|+.+.+.+...|++|+ ++||..... +..|++ +.+++|+.+ ++|++++.+|-.. ....+ +
T Consensus 150 gktvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~-~~~l~ell~--~aDiV~l~lP~t~~T~~~i~~ 224 (333)
T PRK13243 150 GKTIGIIGF-GRIGQAVARRAKGFGMRIL-YYSRTRKPEAEKELGAE-YRPLEELLR--ESDFVSLHVPLTKETYHMINE 224 (333)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHHHcCCE-ecCHHHHHh--hCCEEEEeCCCChHHhhccCH
Confidence 467999999 9999999999999999977 667654221 112443 458999988 7999999999644 33333 2
Q ss_pred HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 134 EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 134 eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
+.+++ +- ..+|+++.|-.+ |...|.++.+.-.++
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~v-d~~aL~~aL~~g~i~ 260 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKVV-DTKALVKALKEGWIA 260 (333)
T ss_pred HHHhcCCCCeEEEECcCchhc-CHHHHHHHHHcCCeE
Confidence 33333 11 246775666544 666666666554443
No 125
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.05 E-value=0.0023 Score=57.91 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=62.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE--------------------cC-ccccccHHHHhhccCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH--------------------LG-LPVFNSVAEAKAETKA 116 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei--------------------~G-vPVy~sl~e~~~~~~~ 116 (181)
+||.|+|. |.||...+..+.+.|+++++ ..|+.+...-. .| +....+++++.+ ++
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~--~a 77 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR--DA 77 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh--hC
Confidence 37999999 99999999999888998764 23333221000 12 445557777766 79
Q ss_pred cEEEEeeChH----------HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHH
Q 030220 117 NASVIYVPPP----------FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 117 DVaIdfVPp~----------~a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~l~ 159 (181)
|++++++|.. .+.++++...+. .-..+|+..+.++.....++.
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 9999999965 366666655543 112234446666655555553
No 126
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.04 E-value=0.002 Score=55.80 Aligned_cols=99 Identities=23% Similarity=0.237 Sum_probs=65.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCCeE---EcCc--cccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE---HLGL--PVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G~e---i~Gv--PVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.+|.|+|+ |.||......+.+.|. ++. ++|+.....+ -.|+ .+..+.++..+ ++|++|+++|+....++
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvViiavp~~~~~~v 82 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAGEIV-GADRSAETRARARELGLGDRVTTSAAEAVK--GADLVILCVPVGASGAV 82 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCcEEE-EEECCHHHHHHHHhCCCCceecCCHHHHhc--CCCEEEECCCHHHHHHH
Confidence 57999998 9999999999988875 443 5565431100 1232 34557777776 79999999999988888
Q ss_pred HHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 132 IMEAMEA-ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 132 ~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
+++.... +-..+|.-..++..+-+..+.+.
T Consensus 83 ~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~ 113 (307)
T PRK07502 83 AAEIAPHLKPGAIVTDVGSVKASVIAAMAPH 113 (307)
T ss_pred HHHHHhhCCCCCEEEeCccchHHHHHHHHHh
Confidence 7766543 22234443666666555555544
No 127
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=97.04 E-value=0.00058 Score=54.85 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=66.1
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe--------------------------EEcC--ccccc--cH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT--------------------------EHLG--LPVFN--SV 107 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~--------------------------ei~G--vPVy~--sl 107 (181)
.||.|-|+ |+.|+.+.+.+.. .++++|+..|+...-+ .+.| ++++. +.
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEECC-CcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence 48999999 9999999998886 5999998777662111 0223 33333 34
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++ ++.++|+++++++.-...+.++.-+++|+|.|+.
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVii 118 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVII 118 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEE
T ss_pred cccccccccccEEEeccccceecccccccccccccceee
Confidence 4443 3458999999999999999999999999999998
No 128
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.03 E-value=0.0011 Score=59.61 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=65.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe-----------------E---------EcC--ccccc--cH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT-----------------E---------HLG--LPVFN--SV 107 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~-----------------e---------i~G--vPVy~--sl 107 (181)
+||.|.|+ ||||+.+.+.+.+. +++++++.||...-. + +.| ++|+. ++
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~ 81 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAI 81 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCCh
Confidence 68999999 99999999998875 899999887542110 0 122 45553 45
Q ss_pred HHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 108 AEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 108 ~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++.=. ++|+++.++......+.+..++++|.+.|++
T Consensus 82 ~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 82 ADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred hhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 555422 8999999999999999999999999999887
No 129
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.03 E-value=0.0057 Score=55.04 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=60.4
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-CCC---------eEEcCcccc-------ccHHHHhhcc--CC
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KGG---------TEHLGLPVF-------NSVAEAKAET--KA 116 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-~~G---------~ei~GvPVy-------~sl~e~~~~~--~~ 116 (181)
.+.++|+|.|+||.+|+.+++.+.+.|.+|++.+.+. +.. ....++.++ ++++++.+.. ++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 3456899999999999999999999999988754321 100 001122222 2355555533 58
Q ss_pred cEEEEeeCh-------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 117 NASVIYVPP-------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 117 DVaIdfVPp-------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
|++|.+..+ .....+++.|.+.|++.+|.+++
T Consensus 138 D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS 182 (390)
T PLN02657 138 DVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA 182 (390)
T ss_pred cEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 998876532 23456777888899997776553
No 130
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.02 E-value=0.002 Score=58.71 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=58.6
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCe---EeeecCCCCCCeEE---cC--cccccc--HHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTK---MVGGVTPKKGGTEH---LG--LPVFNS--VAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~---IVagVdP~~~G~ei---~G--vPVy~s--l~e~~~~~~~DVaIdfVPp~ 126 (181)
+.+|+|+|+||-.|+...+.+++ .+|+ ++..-+... |+.. .| ..++.. .++ .+ ++|+++...|.+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~s-g~~~~~f~g~~~~v~~~~~~~~-~~--~~Divf~a~~~~ 76 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQA-GGAAPSFGGKEGTLQDAFDIDA-LK--KLDIIITCQGGD 76 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhh-CCcccccCCCcceEEecCChhH-hc--CCCEEEECCCHH
Confidence 36899999999999999995555 6887 776333333 3222 22 345542 233 34 799999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 030220 127 FAAAAIMEAMEAELD 141 (181)
Q Consensus 127 ~a~~~~~eaie~GIk 141 (181)
.+.+.+.++.++|++
T Consensus 77 ~s~~~~~~~~~aG~~ 91 (369)
T PRK06598 77 YTNEVYPKLRAAGWQ 91 (369)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999999987
No 131
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.00 E-value=0.0036 Score=55.27 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=66.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCc-cccccHHHHhhccCCcEEEEeeChHHHHH-HH-HH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-PVFNSVAEAKAETKANASVIYVPPPFAAA-AI-ME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~Gv-PVy~sl~e~~~~~~~DVaIdfVPp~~a~~-~~-~e 134 (181)
..+|.|+|. |++|+.+.+.+...|++++ ++|+.... .|. +.+.+++++.+ ++|++++.+|-...-. .+ ++
T Consensus 122 gktvgIiG~-G~IG~~vA~~l~afG~~V~-~~~r~~~~---~~~~~~~~~l~ell~--~aDiv~~~lp~t~~T~~li~~~ 194 (303)
T PRK06436 122 NKSLGILGY-GGIGRRVALLAKAFGMNIY-AYTRSYVN---DGISSIYMEPEDIMK--KSDFVLISLPLTDETRGMINSK 194 (303)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCcc---cCcccccCCHHHHHh--hCCEEEECCCCCchhhcCcCHH
Confidence 367999999 9999999998888899988 56765321 233 34789999988 7999999999654332 22 12
Q ss_pred HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 135 AMEA-EL-DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 135 aie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.++. +- ..+|+++.|=.+ |...|.++.+.-
T Consensus 195 ~l~~mk~ga~lIN~sRG~~v-d~~aL~~aL~~g 226 (303)
T PRK06436 195 MLSLFRKGLAIINVARADVV-DKNDMLNFLRNH 226 (303)
T ss_pred HHhcCCCCeEEEECCCcccc-CHHHHHHHHHcC
Confidence 2222 11 346775665444 555665555443
No 132
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.97 E-value=0.0014 Score=58.82 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=63.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhC--------CeEe-eec-------------CCCCCCeE-EcC------ccccccHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYG--------TKMV-GGV-------------TPKKGGTE-HLG------LPVFNSVAEA 110 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g--------~~IV-agV-------------dP~~~G~e-i~G------vPVy~sl~e~ 110 (181)
||.|+|+ |++|++.+..+.+.| .+|. .+. +....... ..| +...++++++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 5899999 999999999887756 4422 122 21111111 123 3355789998
Q ss_pred hhccCCcEEEEeeChHHHHHHHHHHHHcC--CCEEEEeCCCCCHH
Q 030220 111 KAETKANASVIYVPPPFAAAAIMEAMEAE--LDLVVCITEGIPQH 153 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~~a~~~~~eaie~G--Ik~IV~iTtG~~~e 153 (181)
++ +.|++++.+|+.+..+++++.-..- -+.+|..|-|+..+
T Consensus 80 l~--~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 80 AK--GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred Hh--cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 87 8999999999999999998875441 23466669999776
No 133
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.97 E-value=0.0016 Score=61.28 Aligned_cols=109 Identities=13% Similarity=0.008 Sum_probs=74.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE-----cCc---cccccHHHHhhcc-CCcEEEEeeChHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH-----LGL---PVFNSVAEAKAET-KANASVIYVPPPFA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei-----~Gv---PVy~sl~e~~~~~-~~DVaIdfVPp~~a 128 (181)
.+|.++|. |.||+..+.++.+.|+++.. ..++.+...-. .|. .++++++|+.+.. ++|++++++|...+
T Consensus 7 ~~IG~IGL-G~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 7 SRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCEEEEee-HHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence 46999999 99999999999999999663 23333221000 143 2678999998732 49999999998866
Q ss_pred HHHH-HHHHHcC-C-CEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 129 AAAI-MEAMEAE-L-DLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 129 ~~~~-~eaie~G-I-k~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
.+.+ +.++..- - +.||- ++-...++..++.+.+++..+.|
T Consensus 86 V~~Vi~gl~~~l~~G~iiID-~sT~~~~~t~~~~~~l~~~Gi~f 128 (493)
T PLN02350 86 VDQTIKALSEYMEPGDCIID-GGNEWYENTERRIKEAAEKGLLY 128 (493)
T ss_pred HHHHHHHHHhhcCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCeE
Confidence 5544 5444431 1 34554 66677788888888877665543
No 134
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.96 E-value=0.0032 Score=56.06 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=65.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH-HHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM-EAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~-eai 136 (181)
++|.|+|+ |++|+.+.+.+...|++|+ +.|+.... ....+....+++++.+ ++|++++.+|... ....+. +.+
T Consensus 147 ~~VgIIG~-G~IG~~vA~~L~~~G~~V~-~~d~~~~~-~~~~~~~~~~l~ell~--~aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 147 MTVAIIGT-GRIGAATAKIYAGFGATIT-AYDAYPNK-DLDFLTYKDSVKEAIK--DADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCChhH-hhhhhhccCCHHHHHh--cCCEEEEeCCCcHHHHHHHhHHHH
Confidence 47999999 9999999999999999987 45654322 1112333458999988 8999999999664 223332 233
Q ss_pred Hc---CCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 137 EA---ELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 137 e~---GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+. |. .+|+++-|--+ |...|.++.+.-.+
T Consensus 222 ~~mk~ga-vlIN~aRG~~v-d~~aL~~aL~~g~i 253 (330)
T PRK12480 222 DHVKKGA-ILVNAARGAVI-NTPDLIAAVNDGTL 253 (330)
T ss_pred hcCCCCc-EEEEcCCcccc-CHHHHHHHHHcCCe
Confidence 22 22 46775555444 45555555544333
No 135
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.96 E-value=0.00037 Score=56.19 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=63.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChH-----HHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-----FAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-----~a~ 129 (181)
..+|.|+|+ |+.|+.+++.+...|++|+ ++||.....+ ..++ -+.+++|+.+ ++|++++..|-. ..-
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~~~~-~~~~l~ell~--~aDiv~~~~plt~~T~~li~ 110 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLKAFGMRVI-GYDRSPKPEEGADEFGV-EYVSLDELLA--QADIVSLHLPLTPETRGLIN 110 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHHHTT-EEE-EEESSCHHHHHHHHTTE-EESSHHHHHH--H-SEEEE-SSSSTTTTTSBS
T ss_pred CCEEEEEEE-cCCcCeEeeeeecCCceeE-EecccCChhhhcccccc-eeeehhhhcc--hhhhhhhhhccccccceeee
Confidence 467999999 9999999999999999988 6676653211 1233 4559999998 799999999942 222
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.....++.|. .+|+++-| ..-|...|.++.+.-.+
T Consensus 111 ~~~l~~mk~ga-~lvN~aRG-~~vde~aL~~aL~~g~i 146 (178)
T PF02826_consen 111 AEFLAKMKPGA-VLVNVARG-ELVDEDALLDALESGKI 146 (178)
T ss_dssp HHHHHTSTTTE-EEEESSSG-GGB-HHHHHHHHHTTSE
T ss_pred eeeeeccccce-EEEeccch-hhhhhhHHHHHHhhccC
Confidence 22222333232 46775555 34444455555544443
No 136
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.93 E-value=0.003 Score=53.95 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=61.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCeE---EcCcc-ccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTE---HLGLP-VFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~e---i~GvP-Vy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
||.|+|. |.||+.....+.+.|+. -|.++|+.....+ -.|+. ...+.+++. ++|++|+++|+....+.+++
T Consensus 2 ~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~aD~Vilavp~~~~~~~~~~ 77 (275)
T PRK08507 2 KIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK---KCDVIFLAIPVDAIIEILPK 77 (275)
T ss_pred EEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh---cCCEEEEeCcHHHHHHHHHH
Confidence 6999998 99999999999988763 2445665432100 12432 344666653 48999999999999999988
Q ss_pred HHHcCCCEEEEeCCCCCHHHHHH
Q 030220 135 AMEAELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~ed~~~ 157 (181)
.....-..+|. ..|-...++.+
T Consensus 78 l~~l~~~~iv~-d~gs~k~~i~~ 99 (275)
T PRK08507 78 LLDIKENTTII-DLGSTKAKIIE 99 (275)
T ss_pred HhccCCCCEEE-ECccchHHHHH
Confidence 76522122443 45555555444
No 137
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.92 E-value=0.0099 Score=54.09 Aligned_cols=90 Identities=18% Similarity=0.126 Sum_probs=65.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
+.+|.|+|.+|.||+...+.+.+. +.+|. ++|+...+ ..+.++..+ ++|++|+++|.....+.+++..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~~d~~--------~~~~~~~v~--~aDlVilavPv~~~~~~l~~l~ 72 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDPADPG--------SLDPATLLQ--RADVLIFSAPIRHTAALIEEYV 72 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcCCccc--------cCCHHHHhc--CCCEEEEeCCHHHHHHHHHHHh
Confidence 467999999999999999999874 77776 68875321 235667776 7999999999999999999988
Q ss_pred Hc----CCCEEEEeCCCCCHHHHHHH
Q 030220 137 EA----ELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 137 e~----GIk~IV~iTtG~~~ed~~~l 158 (181)
.. .-..+|.=...+...=+..+
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~ 98 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAM 98 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHH
Confidence 75 22234332355554333444
No 138
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.91 E-value=0.0032 Score=56.12 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=59.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
+.||.|+|+||--|+...+.+.+. .+++++...... ..+ .+.++..+ ++|+++.++|...+.+.+.++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~ 71 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA------AARRELLN--AADVAILCLPDDAAREAVALID 71 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc------cCchhhhc--CCCEEEECCCHHHHHHHHHHHH
Confidence 478999999999999999998885 788886643322 111 22233334 7999999999999999999999
Q ss_pred HcCCCEE
Q 030220 137 EAELDLV 143 (181)
Q Consensus 137 e~GIk~I 143 (181)
+.|++.|
T Consensus 72 ~~g~~VI 78 (313)
T PRK11863 72 NPATRVI 78 (313)
T ss_pred hCCCEEE
Confidence 9999754
No 139
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.90 E-value=0.0015 Score=56.23 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=58.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEee----------ChH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV----------PPP-- 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfV----------Pp~-- 126 (181)
|||+|.|++|-+|+.+.+.+.+.|.++++. +... .++.-.+.+.+.+++.+||++|.+. .|+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~~-----~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a 74 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIAT-SRSD-----LDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEA 74 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEE-STTC-----S-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cchh-----cCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhh
Confidence 689999999999999999999988888855 4432 1233334678888877899999985 333
Q ss_pred ------HHHHHHHHHHHcCCCEEEEeC
Q 030220 127 ------FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 127 ------~a~~~~~eaie~GIk~IV~iT 147 (181)
.+...++.|.+.|++.|..-|
T Consensus 75 ~~iN~~~~~~la~~~~~~~~~li~~ST 101 (286)
T PF04321_consen 75 YAINVDATKNLAEACKERGARLIHIST 101 (286)
T ss_dssp HHHHTHHHHHHHHHHHHCT-EEEEEEE
T ss_pred HHHhhHHHHHHHHHHHHcCCcEEEeec
Confidence 334567888899999998744
No 140
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.87 E-value=0.0023 Score=59.67 Aligned_cols=105 Identities=10% Similarity=-0.015 Sum_probs=68.4
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCC--CCCe---E-Ec--CccccccHHHHhhcc-CCcEEEEeeCh-HHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGGT---E-HL--GLPVFNSVAEAKAET-KANASVIYVPP-PFAA 129 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~--~~G~---e-i~--GvPVy~sl~e~~~~~-~~DVaIdfVPp-~~a~ 129 (181)
.|.++|. |+||+..+..+.+.|++|+. .|+. +... + .. ++..+++++++.+.. ++|++++++|+ +.+.
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~~V~v-~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGFTVSV-YNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCCeEEE-EeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 3789999 99999999999999998663 3433 2110 1 11 366788888887542 68999999999 6777
Q ss_pred HHHHHHHHcC--CCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 130 AAIMEAMEAE--LDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 130 ~~~~eaie~G--Ik~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++++.+...- =+.||-.++..+.+......+ .++..+
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi 117 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGI 117 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCC
Confidence 7777665541 145666455555554444444 444333
No 141
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=96.87 E-value=0.0039 Score=53.93 Aligned_cols=85 Identities=21% Similarity=0.138 Sum_probs=62.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccc------cHHHHhhccCCcEEEEeeChHHH-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFN------SVAEAKAETKANASVIYVPPPFA- 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~------sl~e~~~~~~~DVaIdfVPp~~a- 128 (181)
++|+|.|+||- |+.+++.+.+.|.++++-+.-...... ..+.||.. ++.+++.++++|++||.++|-+.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~ 79 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQ 79 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHH
Confidence 47999999996 999999999889998875432221111 22345553 57777887899999999999763
Q ss_pred --HHHHHHHHHcCCCEEE
Q 030220 129 --AAAIMEAMEAELDLVV 144 (181)
Q Consensus 129 --~~~~~eaie~GIk~IV 144 (181)
+.+.+-|-+.||+-+=
T Consensus 80 is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 80 ITTNATAVCKELGIPYVR 97 (256)
T ss_pred HHHHHHHHHHHhCCcEEE
Confidence 5667777788998764
No 142
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.83 E-value=0.0042 Score=55.44 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=59.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
.||.|+|++|-.|.+..+.+.+. +++++....... . ..+ +.+++.+ ++|+++.++|...+.+.+..+.+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~---~~~-~~~~~~~--~~D~vFlalp~~~s~~~~~~~~~ 71 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----K---DAA-ERAKLLN--AADVAILCLPDDAAREAVSLVDN 71 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----c---CcC-CHhHhhc--CCCEEEECCCHHHHHHHHHHHHh
Confidence 57999999999999999999985 899887644322 1 111 3445555 79999999999999999999999
Q ss_pred cCCCEE
Q 030220 138 AELDLV 143 (181)
Q Consensus 138 ~GIk~I 143 (181)
+|++.|
T Consensus 72 ~g~~VI 77 (310)
T TIGR01851 72 PNTCII 77 (310)
T ss_pred CCCEEE
Confidence 998754
No 143
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.83 E-value=0.0029 Score=58.94 Aligned_cols=96 Identities=23% Similarity=0.246 Sum_probs=63.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--E------------------EcC-ccccccHHHHhhccCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--E------------------HLG-LPVFNSVAEAKAETKA 116 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--e------------------i~G-vPVy~sl~e~~~~~~~ 116 (181)
+||.|+|+ |.||..+...+...|++|.. ..+|.+... + ..| +.+.++++++.+ ++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--~a 81 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--GA 81 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--CC
Confidence 47999999 99999999999999998652 333332110 0 012 556678888877 89
Q ss_pred cEEEEeeChHHH-HHHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030220 117 NASVIYVPPPFA-AAAIMEAMEAELD---LVVCITEGIPQHDMVI 157 (181)
Q Consensus 117 DVaIdfVPp~~a-~~~~~eaie~GIk---~IV~iTtG~~~ed~~~ 157 (181)
|+++..+|+... .+.+..-++...+ .|..-|.|++..++.+
T Consensus 82 D~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~ 126 (495)
T PRK07531 82 DWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE 126 (495)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 999999999863 3322222333222 4666689999876654
No 144
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.83 E-value=0.0046 Score=56.41 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=63.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-----HHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-----AAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-----a~~~~ 132 (181)
..+|.|+|+ |++|+.+++.+...|++++ +.||.... ..+..-|.+++|+.+ ++|++++.+|-.. ....+
T Consensus 116 gktvGIIG~-G~IG~~va~~l~a~G~~V~-~~Dp~~~~--~~~~~~~~~l~ell~--~aDiV~lh~Plt~~g~~~T~~li 189 (381)
T PRK00257 116 ERTYGVVGA-GHVGGRLVRVLRGLGWKVL-VCDPPRQE--AEGDGDFVSLERILE--ECDVISLHTPLTKEGEHPTRHLL 189 (381)
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCcccc--cccCccccCHHHHHh--hCCEEEEeCcCCCCccccccccC
Confidence 367999999 9999999999999999987 56775422 122223568999988 7999999999632 23333
Q ss_pred HH-HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhh
Q 030220 133 ME-AMEA-EL-DLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 133 ~e-aie~-GI-k~IV~iTtG~~~ed~~~l~~~ak 163 (181)
.+ .++. +- ..+|+.+-|=-+ |...|.++.+
T Consensus 190 ~~~~l~~mk~gailIN~aRG~vV-de~AL~~aL~ 222 (381)
T PRK00257 190 DEAFLASLRPGAWLINASRGAVV-DNQALREALL 222 (381)
T ss_pred CHHHHhcCCCCeEEEECCCCccc-CHHHHHHHHH
Confidence 22 2222 11 246664555444 4444544443
No 145
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.82 E-value=0.0052 Score=56.15 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=66.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccc-cHHHHhhc-------------cCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFN-SVAEAKAE-------------TKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~-sl~e~~~~-------------~~~DVaId 121 (181)
++||.|+|. |.||......+.+.|+++++ ..|+.+... ....+|++. .+++++++ .++|++++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 368999999 99999999999999999774 344443221 113466665 45555321 16899999
Q ss_pred eeCh----------HHHHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHH
Q 030220 122 YVPP----------PFAAAAIMEAMEAEL-DLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 122 fVPp----------~~a~~~~~eaie~GI-k~IV~iTtG~~~ed~~~l~~~ 161 (181)
++|. ..+.++++....+-- ..+|+..+-++..-..++.+.
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~ 132 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEW 132 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHH
Confidence 9998 577777766655422 224444555665555555443
No 146
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.81 E-value=0.0072 Score=53.36 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=78.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEe-eecCCCCCCeE--EcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IV-agVdP~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+||.++|. |.||+-..+.+.+.|+++. ...+|.+.-+. -.|..++.+..|+.+ +.|++|.++|.......+...
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~V~~V~~g 77 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAA--EADVVITMLPDDAAVRAVLFG 77 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHH--hCCEEEEecCCHHHHHHHHhC
Confidence 47999999 9999999999999999954 45666662211 248899999999888 899999999988777766643
Q ss_pred ----HHc-CCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 136 ----MEA-ELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 136 ----ie~-GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
++. .-..+|+--+=++.++..++.+.+++-.+-
T Consensus 78 ~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~ 115 (286)
T COG2084 78 ENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLE 115 (286)
T ss_pred ccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc
Confidence 221 112244445668889999999888776443
No 147
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.81 E-value=0.0034 Score=53.70 Aligned_cols=97 Identities=8% Similarity=0.063 Sum_probs=62.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-------------EE------------cCccccccHHHHhh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-------------EH------------LGLPVFNSVAEAKA 112 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-------------ei------------~GvPVy~sl~e~~~ 112 (181)
.||+|+|+ |.||..+...+...|.+++. .++|..... +. .++.+.++.++ .+
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 57999999 99999999999888988663 333332100 00 13344556654 34
Q ss_pred ccCCcEEEEeeChHHH--HHHHHHHHHc-CCCE-EEEeCCCCCHHHHHHHH
Q 030220 113 ETKANASVIYVPPPFA--AAAIMEAMEA-ELDL-VVCITEGIPQHDMVINF 159 (181)
Q Consensus 113 ~~~~DVaIdfVPp~~a--~~~~~eaie~-GIk~-IV~iTtG~~~ed~~~l~ 159 (181)
++|++|.++|++.. +++..++... .-.. ++..|.|++..++.+..
T Consensus 82 --~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~ 130 (282)
T PRK05808 82 --DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAAT 130 (282)
T ss_pred --cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhh
Confidence 79999999997555 5666664433 1122 33558899888766543
No 148
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=96.77 E-value=0.0036 Score=48.22 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCC--CCeEEcCcccccc---HHHHhhccCCcEEEEeeCh---H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKK--GGTEHLGLPVFNS---VAEAKAETKANASVIYVPP---P 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~--~G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp---~ 126 (181)
..+..++|. |..|....+.+.+ .|++++|-+|+.. .+.++.|+|+..+ +.+..+++++|-+++..|. +
T Consensus 77 ~~~~~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~ 155 (175)
T PF13727_consen 77 GRNVLIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEE 155 (175)
T ss_dssp -EEEEEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HH
T ss_pred ccceEEEEE-echHHHHHHHHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHH
Confidence 344567775 6678888888777 4899999877544 3456789999974 6666777899999999765 4
Q ss_pred HHHHHHHHHHHcCCCEEE
Q 030220 127 FAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV 144 (181)
...+.+++|-+.|++.-+
T Consensus 156 ~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 156 QIKRIIEELENHGVRVRV 173 (175)
T ss_dssp HHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 566778888888887644
No 149
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.0047 Score=57.10 Aligned_cols=38 Identities=26% Similarity=0.213 Sum_probs=32.3
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
..-.+...|+|+|+||+.|+.+++.+++.||.+-++|-
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VR 111 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVR 111 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeecc
Confidence 33445577999999999999999999999999888754
No 150
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=96.75 E-value=0.0039 Score=57.06 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=62.6
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCCCCeEEcCcccccc---HHHHhhccCCcEEEEeeChHHHH--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGGTEHLGLPVFNS---VAEAKAETKANASVIYVPPPFAA-- 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~~G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp~~a~-- 129 (181)
..|++|+|+ |..|....+.+.+ .|+++||-++.......+.|+||+.+ +.++.+++++|-+++..|...-.
T Consensus 124 ~rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~~ 202 (442)
T TIGR03013 124 KRRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLP 202 (442)
T ss_pred CCcEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcchH
Confidence 367999999 9999877444433 38999998843222225789999985 55567778999999999865543
Q ss_pred -HHHHHHHHcCCCEEEE
Q 030220 130 -AAIMEAMEAELDLVVC 145 (181)
Q Consensus 130 -~~~~eaie~GIk~IV~ 145 (181)
+.+++|-+.|++..+.
T Consensus 203 ~~~l~~~~~~gv~V~iv 219 (442)
T TIGR03013 203 VDELLECKLSGIEVVDA 219 (442)
T ss_pred HHHHHHHHhCCCEEEEc
Confidence 3567777788877654
No 151
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=96.75 E-value=0.0061 Score=56.49 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=63.4
Q ss_pred ceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCCCCeEEcCcccccc---HHHHhhccCCcEEEEeeCh---HHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGGTEHLGLPVFNS---VAEAKAETKANASVIYVPP---PFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~~G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp---~~a~ 129 (181)
.+|+|+|+ |..|+..++.+.+ .|+++||-+|....+ -.++|++.+ +.++.+++++|-+++..|. +...
T Consensus 144 rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~--g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~ 220 (463)
T PRK10124 144 RMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKPG--GVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVK 220 (463)
T ss_pred CcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCccc--cCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHH
Confidence 57999999 9999999888876 389999988854322 124566876 4455677899999999884 4456
Q ss_pred HHHHHHHHcCCCEEEE
Q 030220 130 AAIMEAMEAELDLVVC 145 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~ 145 (181)
+.+++|.+.|++..+.
T Consensus 221 ell~~~~~~~v~V~iv 236 (463)
T PRK10124 221 KLVRQLADTTCSVLLI 236 (463)
T ss_pred HHHHHHHHcCCeEEEe
Confidence 7788888889987655
No 152
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.70 E-value=0.005 Score=52.24 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=61.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCC--CCCCeEE--cCcc-----------ccccHHHHhhccCCcEEEEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP--KKGGTEH--LGLP-----------VFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP--~~~G~ei--~GvP-----------Vy~sl~e~~~~~~~DVaIdfV 123 (181)
+||+|+|+ |.||......+.+.|.++.. +++ .... .+ .|+. ..++.+++ + ++|++++++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~~V~~-~~r~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGHDVTL-VARRGAHLD-ALNENGLRLEDGEITVPVLAADDPAEL-G--PQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEE-EECChHHHH-HHHHcCCcccCCceeecccCCCChhHc-C--CCCEEEEec
Confidence 47999999 99999999998888877653 332 2100 00 1332 23455554 3 799999999
Q ss_pred ChHHHHHHHHHHHHc-CC-CEEEEeCCCCCHHH
Q 030220 124 PPPFAAAAIMEAMEA-EL-DLVVCITEGIPQHD 154 (181)
Q Consensus 124 Pp~~a~~~~~eaie~-GI-k~IV~iTtG~~~ed 154 (181)
++....++++.+... +- ..||.+.-|+..++
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 999998888877653 22 25666788997544
No 153
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.0039 Score=56.24 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=67.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCC-------------CC------------eEE--cCccccccHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKK-------------GG------------TEH--LGLPVFNSVA 108 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~-------------~G------------~ei--~GvPVy~sl~ 108 (181)
+.||.|-|+ |+.|+.+++.+.+. ++++||..|... .| ..+ .+++|+.+.+
T Consensus 1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CcEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 368999999 99999999999885 599998655211 00 011 2688988644
Q ss_pred -HHhh--ccCCcEEEEeeChHHHHHHHHHHHHc-CCCEEEEeCCC
Q 030220 109 -EAKA--ETKANASVIYVPPPFAAAAIMEAMEA-ELDLVVCITEG 149 (181)
Q Consensus 109 -e~~~--~~~~DVaIdfVPp~~a~~~~~eaie~-GIk~IV~iTtG 149 (181)
+.+. +..+|++|+++|--...+.++.-+++ |+|.|+.-.++
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence 4332 34689999999999999999988888 59999983433
No 154
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.68 E-value=0.004 Score=53.54 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe---E-----------------------EcCccccccHHHHh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT---E-----------------------HLGLPVFNSVAEAK 111 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~---e-----------------------i~GvPVy~sl~e~~ 111 (181)
++|.|+|+ |.||..++..+.+.|.++.. .+++..... . ...+.+..+++++.
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 57999999 99999999988888888652 343321000 0 02344567888877
Q ss_pred hccCCcEEEEeeChH--HHHHHHHHHHHc-CCCEEE-EeCCCCCHHHHHHH
Q 030220 112 AETKANASVIYVPPP--FAAAAIMEAMEA-ELDLVV-CITEGIPQHDMVIN 158 (181)
Q Consensus 112 ~~~~~DVaIdfVPp~--~a~~~~~eaie~-GIk~IV-~iTtG~~~ed~~~l 158 (181)
+ ++|++|.++|.+ ..+++..++.+. .-+.|+ .-|+.++..++.+.
T Consensus 83 ~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~ 131 (287)
T PRK08293 83 K--DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEA 131 (287)
T ss_pred c--CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhh
Confidence 7 899999999954 556666554443 112233 34778877765553
No 155
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.68 E-value=0.0023 Score=55.04 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=62.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--E-----------------------EcCccccccHHHHhh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--E-----------------------HLGLPVFNSVAEAKA 112 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--e-----------------------i~GvPVy~sl~e~~~ 112 (181)
.+|.|+|+ |.||..+...+.+.|++++. ..|+..... + ...+....++++..+
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 47999999 99999999999888998663 344332110 0 012345567877777
Q ss_pred ccCCcEEEEeeChHHHH--HHHHHHHHcCCC---EEEEeCCCCCHHHHHHHH
Q 030220 113 ETKANASVIYVPPPFAA--AAIMEAMEAELD---LVVCITEGIPQHDMVINF 159 (181)
Q Consensus 113 ~~~~DVaIdfVPp~~a~--~~~~eaie~GIk---~IV~iTtG~~~ed~~~l~ 159 (181)
++|+++.++|.+... .+..++.+ .++ .++.-|+.++..++.+..
T Consensus 81 --~aD~Vi~avpe~~~~k~~~~~~l~~-~~~~~~il~~~tSt~~~~~l~~~~ 129 (288)
T PRK09260 81 --DADLVIEAVPEKLELKKAVFETADA-HAPAECYIATNTSTMSPTEIASFT 129 (288)
T ss_pred --CCCEEEEeccCCHHHHHHHHHHHHh-hCCCCcEEEEcCCCCCHHHHHhhc
Confidence 899999999988642 33333332 222 232337888888765443
No 156
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.67 E-value=0.0083 Score=57.91 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=69.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCCeE---EcCcc--ccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE---HLGLP--VFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G~e---i~GvP--Vy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.+|.|+|+ |+||....+.+.+.|+ +|+ ++|+.....+ -.|+. ...+++++++ ++|++++.+|++...++
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~v 79 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVV-AVDRRAKSLELAVSLGVIDRGEEDLAEAVS--GADVIVLAVPVLAMEKV 79 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEE-EEECChhHHHHHHHCCCCCcccCCHHHHhc--CCCEEEECCCHHHHHHH
Confidence 67999998 9999999999998884 444 5665542110 12432 3446777776 79999999999999999
Q ss_pred HHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 132 IMEAMEA-ELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 132 ~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
++++... .-..+|....+++..-...+.+..
T Consensus 80 l~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~ 111 (735)
T PRK14806 80 LADLKPLLSEHAIVTDVGSTKGNVVDAARAVF 111 (735)
T ss_pred HHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence 8887653 223355447788866666666554
No 157
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.66 E-value=0.007 Score=55.24 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=65.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-----HHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-----AAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-----a~~~~ 132 (181)
..+|.|+|+ |++|+.+++.+...|++++ +.||...... .+ -.|.+++++++ ++|++++.+|-.. ....+
T Consensus 116 gktvGIIG~-G~IG~~vA~~l~a~G~~V~-~~dp~~~~~~-~~-~~~~~L~ell~--~sDiI~lh~PLt~~g~~~T~~li 189 (378)
T PRK15438 116 DRTVGIVGV-GNVGRRLQARLEALGIKTL-LCDPPRADRG-DE-GDFRSLDELVQ--EADILTFHTPLFKDGPYKTLHLA 189 (378)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCcccccc-cc-cccCCHHHHHh--hCCEEEEeCCCCCCccccccccc
Confidence 467999999 9999999999999999988 5687543211 11 24679999998 7999999998433 33333
Q ss_pred HHH-HHc-CC-CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 133 MEA-MEA-EL-DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 133 ~ea-ie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.+. +++ +- ..+|+ |.-=+.-|...|.++.++
T Consensus 190 ~~~~l~~mk~gailIN-~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 190 DEKLIRSLKPGAILIN-ACRGAVVDNTALLTCLNE 223 (378)
T ss_pred CHHHHhcCCCCcEEEE-CCCchhcCHHHHHHHHHh
Confidence 222 222 22 24566 444444455555555443
No 158
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=96.65 E-value=0.0032 Score=56.71 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=65.4
Q ss_pred cCCceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe------------------EE----------cC--cccc
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT------------------EH----------LG--LPVF 104 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~------------------ei----------~G--vPVy 104 (181)
++..||.|.|+ |++|+.+.+.+.+ .+.++|+..||...-. ++ .| ++|+
T Consensus 3 ~~~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 3 DKKIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CCceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 34579999999 9999999998776 4899998776543211 00 11 2333
Q ss_pred c--cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 105 N--SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 105 ~--sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
. +.++++ ++.++|+++.++......+.+...+++|.+.|++ +
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vii-S 126 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVI-S 126 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEe-C
Confidence 2 123332 2248999999999999999999999999988877 5
No 159
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.65 E-value=0.016 Score=48.14 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=58.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe---EEcCccccc-c----HHHHhhc--cCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT---EHLGLPVFN-S----VAEAKAE--TKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~---ei~GvPVy~-s----l~e~~~~--~~~DVaIdfVPp~ 126 (181)
+++|+|.|++|..|+.+++.+.+.|.+|++.+. +..... +..++.++. + .+++.+. .++|+++.+.+..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~~ 96 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGFR 96 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 578999999999999999999998999886532 221100 001122221 1 2223222 2689999876532
Q ss_pred --------------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 --------------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 --------------~a~~~~~eaie~GIk~IV~iTt 148 (181)
....+++.+.+.|++.+|.+++
T Consensus 97 ~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS 132 (251)
T PLN00141 97 RSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSS 132 (251)
T ss_pred cCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEcc
Confidence 3566777777889888877665
No 160
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.62 E-value=0.013 Score=49.94 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=60.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-------CCCeEEc--------CccccccHHHHhhccCCcEEEEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-------KGGTEHL--------GLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-------~~G~ei~--------GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
+||+|+|+ |.+|......+.+.|.++.. +++. ..|-.+. ..++.++.++..+ .+|++++++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~~V~~-~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGRDVTF-LVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVILAV 76 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCCceEE-EecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC--CCCEEEEEe
Confidence 47999999 99999999988887777553 3321 1111110 1123345555544 799999999
Q ss_pred ChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHH
Q 030220 124 PPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHD 154 (181)
Q Consensus 124 Pp~~a~~~~~eaie~-G-Ik~IV~iTtG~~~ed 154 (181)
|+....++++++... + =..|+.+.-|+..++
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~ 109 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLE 109 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCCCChHH
Confidence 999999888877653 1 134655678987443
No 161
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.61 E-value=0.013 Score=51.79 Aligned_cols=99 Identities=8% Similarity=0.078 Sum_probs=63.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcc---ccccHHHHhhccCCcEEEEeeChHHH-HHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP---VFNSVAEAKAETKANASVIYVPPPFA-AAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvP---Vy~sl~e~~~~~~~DVaIdfVPp~~a-~~~~~ 133 (181)
..+|.|+|. |++|+.+.+.+...|+++. ++|+.... ..++. -+.+++++++ ++|++++.+|-... ...+.
T Consensus 136 g~tvgIvG~-G~IG~~vA~~l~afG~~V~-~~~~~~~~--~~~~~~~~~~~~l~e~l~--~aDvvv~~lPlt~~T~~li~ 209 (312)
T PRK15469 136 DFTIGILGA-GVLGSKVAQSLQTWGFPLR-CWSRSRKS--WPGVQSFAGREELSAFLS--QTRVLINLLPNTPETVGIIN 209 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCCCC--CCCceeecccccHHHHHh--cCCEEEECCCCCHHHHHHhH
Confidence 367999999 9999999999999999987 46654321 11211 1357899988 89999999995544 33322
Q ss_pred H-HH---HcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 134 E-AM---EAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 134 e-ai---e~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+ .+ +.| ..+|+++-|--+ |...|.++.+.
T Consensus 210 ~~~l~~mk~g-a~lIN~aRG~vV-de~aL~~aL~~ 242 (312)
T PRK15469 210 QQLLEQLPDG-AYLLNLARGVHV-VEDDLLAALDS 242 (312)
T ss_pred HHHHhcCCCC-cEEEECCCcccc-CHHHHHHHHhc
Confidence 2 22 223 257776655544 44444444433
No 162
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.60 E-value=0.0045 Score=53.89 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=60.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--cCcc-----------------ccccHHHHhhccCCcEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LGLP-----------------VFNSVAEAKAETKANAS 119 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--~GvP-----------------Vy~sl~e~~~~~~~DVa 119 (181)
+||.|+|+ |.||......+.+.|.++.. +++...-+.+ .|+. +..+. +..+ ++|++
T Consensus 3 mkI~IiG~-G~mG~~~A~~L~~~G~~V~~-~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~D~v 77 (341)
T PRK08229 3 ARICVLGA-GSIGCYLGGRLAAAGADVTL-IGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA--TADLV 77 (341)
T ss_pred ceEEEECC-CHHHHHHHHHHHhcCCcEEE-EecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc--CCCEE
Confidence 67999999 99999999999988888664 4432110000 1221 22344 3333 79999
Q ss_pred EEeeChHHHHHHHHHHHHcCC--CEEEEeCCCCCHH
Q 030220 120 VIYVPPPFAAAAIMEAMEAEL--DLVVCITEGIPQH 153 (181)
Q Consensus 120 IdfVPp~~a~~~~~eaie~GI--k~IV~iTtG~~~e 153 (181)
++++++....++++.+...-- ..|+.++.|+...
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 999999999988877665411 2356568898754
No 163
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.59 E-value=0.013 Score=48.51 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=29.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG 94 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~ 94 (181)
+.+|+|+|+ |-.|..+.+.+...|..-+..+|+...
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 467999999 669999999999999885556776654
No 164
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.58 E-value=0.0038 Score=46.86 Aligned_cols=81 Identities=17% Similarity=0.129 Sum_probs=52.6
Q ss_pred eEEEEccCCCCcchhhHHHHH-hCCeEeeecC-CCCCCeEE---c-Ccc--ccccH--HHHhhccCCcEEEEeeChHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIE-YGTKMVGGVT-PKKGGTEH---L-GLP--VFNSV--AEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~-~g~~IVagVd-P~~~G~ei---~-GvP--Vy~sl--~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
|+.++|++|.+|+.+.+.+.+ .++++++.++ +...++.. . .+. ++..+ +++. ..++|++++++|++...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvV~~~~~~~~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE-ELAVDIVFLALPHGVSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh-hcCCCEEEEcCCcHHHH
Confidence 589999999999999999988 4999887644 32223221 1 121 12222 2221 23789999999999999
Q ss_pred HHHHHH---HHcCCC
Q 030220 130 AAIMEA---MEAELD 141 (181)
Q Consensus 130 ~~~~ea---ie~GIk 141 (181)
+.+..+ ++.|..
T Consensus 80 ~~~~~~~~~~~~g~~ 94 (122)
T smart00859 80 EIAPLLPKAAEAGVK 94 (122)
T ss_pred HHHHHHHhhhcCCCE
Confidence 976543 345643
No 165
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.58 E-value=0.0054 Score=57.76 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=68.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-HH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-ME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~e 134 (181)
.+|.|+|. |++|+.+++.+...|++++ ++||..... .-.|++..++++|+.+ ++|++++.+|... ...++ ++
T Consensus 139 ktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~~ 214 (525)
T TIGR01327 139 KTLGVIGL-GRIGSIVAKRAKAFGMKVL-AYDPYISPERAEQLGVELVDDLDELLA--RADFITVHTPLTPETRGLIGAE 214 (525)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEcCCHHHHHh--hCCEEEEccCCChhhccCcCHH
Confidence 56999999 9999999999999999987 567643211 1235665678999988 8999999999653 33333 12
Q ss_pred HHHc-CCC-EEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 135 AMEA-ELD-LVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 135 aie~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.++. +-. .+|+.+.| ..-|...|.++.+.-.++
T Consensus 215 ~l~~mk~ga~lIN~aRG-~~vde~aL~~aL~~g~i~ 249 (525)
T TIGR01327 215 ELAKMKKGVIIVNCARG-GIIDEAALYEALEEGHVR 249 (525)
T ss_pred HHhcCCCCeEEEEcCCC-ceeCHHHHHHHHHcCCee
Confidence 2322 222 35664555 444556666666554443
No 166
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.58 E-value=0.0053 Score=55.32 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=68.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe-----------------E---------EcC--ccccc--cH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT-----------------E---------HLG--LPVFN--SV 107 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~-----------------e---------i~G--vPVy~--sl 107 (181)
.||.|-|+ |+.|+.+.+.+.+. ++++|+..||...-. + ++| +++|. +.
T Consensus 3 ~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp 81 (337)
T PTZ00023 3 VKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDP 81 (337)
T ss_pred eEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCCh
Confidence 48999999 99999999987764 899998766432110 0 123 56665 57
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
++++ ++.++|+++.++......+-+..++++|.+.|++ |.
T Consensus 82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~i-Sa 122 (337)
T PTZ00023 82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM-SA 122 (337)
T ss_pred hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEe-CC
Confidence 7775 3458999999999999999999999999999988 53
No 167
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.54 E-value=0.0074 Score=51.91 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=60.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--E-E------------cC-------------ccccccHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--E-H------------LG-------------LPVFNSVAE 109 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--e-i------------~G-------------vPVy~sl~e 109 (181)
.+|.|+|+ |.||..+...+...|++|+. .+++..... + + .| +...+++ +
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 57999999 99999999999888998663 333332110 0 0 01 1122344 3
Q ss_pred HhhccCCcEEEEeeChHH--HHHHHHHHHHcCCC---EEEEeCCCCCHHHHHHHH
Q 030220 110 AKAETKANASVIYVPPPF--AAAAIMEAMEAELD---LVVCITEGIPQHDMVINF 159 (181)
Q Consensus 110 ~~~~~~~DVaIdfVPp~~--a~~~~~eaie~GIk---~IV~iTtG~~~ed~~~l~ 159 (181)
..+ ++|++|.++|++. -+++..+ ++.-++ .++..|.|++..++.+..
T Consensus 82 ~~~--~aDlVieav~e~~~~k~~~~~~-l~~~~~~~~il~S~tsg~~~~~la~~~ 133 (291)
T PRK06035 82 SLS--DADFIVEAVPEKLDLKRKVFAE-LERNVSPETIIASNTSGIMIAEIATAL 133 (291)
T ss_pred HhC--CCCEEEEcCcCcHHHHHHHHHH-HHhhCCCCeEEEEcCCCCCHHHHHhhc
Confidence 344 7999999999886 3444444 433232 345557899888776543
No 168
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.52 E-value=0.011 Score=53.43 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=64.0
Q ss_pred CceEEEEccCCCCcchhhHHHHH--------hC--CeEeeecCCCCCCeEEcCccccc-----------------cHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE--------YG--TKMVGGVTPKKGGTEHLGLPVFN-----------------SVAEA 110 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~--------~g--~~IVagVdP~~~G~ei~GvPVy~-----------------sl~e~ 110 (181)
..+|+++|+ |..|+.+++.+.+ +| ++|++..|....--.-.|++.-. +..+.
T Consensus 2 ~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 368999999 9999977776543 23 45666555322110001222111 12222
Q ss_pred h-hccCCcEEEEeeCh-----HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 111 K-AETKANASVIYVPP-----PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 111 ~-~~~~~DVaIdfVPp-----~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
. +..++||+|+++|. +.+++.+..|+++|++.|-. --+.-..+..+|.++|++-
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTA-NK~~la~~~~eL~~lA~~~ 140 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAI-SKGALVTNWREINEAAKIA 140 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcC-CcHHHhccHHHHHHHHHHc
Confidence 2 22258999999986 57889999999999998854 2222233446666666553
No 169
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.50 E-value=0.017 Score=51.41 Aligned_cols=94 Identities=10% Similarity=0.082 Sum_probs=59.5
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC--Ce-----EE--cCccccccHHHHhhccCCcEEEEee
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GT-----EH--LGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~--G~-----ei--~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
-+.++.+||+|.|++|..|+.+++.+.+.|.+|++....... .. ++ .++.-..++.++++ ++|++|.+.
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih~A 93 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFNLA 93 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHh--CCCEEEEcc
Confidence 355677899999999999999999999999998864221110 00 00 11111112334444 789988886
Q ss_pred Ch-------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 124 PP-------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 124 Pp-------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.. .....+++.|.++|++.+|.+++
T Consensus 94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 21 12345667777889988876554
No 170
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.49 E-value=0.0051 Score=54.18 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=49.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|. |+.|+.+.+.+..+|++|+ ++||.... +..+++ |.+++|+++ ++|++++.+|-.
T Consensus 145 gktvGIiG~-G~IG~~vA~~~~~fgm~V~-~~d~~~~~-~~~~~~-~~~l~ell~--~sDvv~lh~Plt 207 (311)
T PRK08410 145 GKKWGIIGL-GTIGKRVAKIAQAFGAKVV-YYSTSGKN-KNEEYE-RVSLEELLK--TSDIISIHAPLN 207 (311)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhcCCEEE-EECCCccc-cccCce-eecHHHHhh--cCCEEEEeCCCC
Confidence 356999999 9999999999998999988 56775322 123443 558999998 799999999954
No 171
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.47 E-value=0.008 Score=50.67 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=59.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC----C----------eEEcCccccc-----cHHHHhhccCCcE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----G----------TEHLGLPVFN-----SVAEAKAETKANA 118 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~----G----------~ei~GvPVy~-----sl~e~~~~~~~DV 118 (181)
..+|+|+|+ |+.|+...+.+.+.|.++|+..|.+.. | .+..++..|+ +-+++.. .++|+
T Consensus 23 g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~DV 100 (217)
T cd05211 23 GLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG-LDVDI 100 (217)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee-ccccE
Confidence 478999999 999999999999999999987664320 1 0112333332 2233433 48899
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 119 SVIYVPPPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 119 aIdfVPp~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
.+-+.+.. .-..+.+.+.+++.|+. ...
T Consensus 101 lipaA~~~--~i~~~~a~~l~a~~V~e-~AN 128 (217)
T cd05211 101 FAPCALGN--VIDLENAKKLKAKVVAE-GAN 128 (217)
T ss_pred EeeccccC--ccChhhHhhcCccEEEe-CCC
Confidence 99988766 33555666778999998 544
No 172
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.43 E-value=0.015 Score=48.07 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=28.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |.+|+.+++.+...|+.-+-.+|+..
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 467999999 99999999999999986444666653
No 173
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.40 E-value=0.014 Score=53.46 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=66.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEA- 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~ea- 135 (181)
..+|.|+|. |+.|+.+++.+...|++++ +.||.... ...++.-..+++|+++ ++|++++.+|-.. ....+.+.
T Consensus 151 gktvGIiG~-G~IG~~vA~~~~~fGm~V~-~~d~~~~~-~~~~~~~~~~l~ell~--~sDiVslh~Plt~~T~~li~~~~ 225 (409)
T PRK11790 151 GKTLGIVGY-GHIGTQLSVLAESLGMRVY-FYDIEDKL-PLGNARQVGSLEELLA--QSDVVSLHVPETPSTKNMIGAEE 225 (409)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCccc-ccCCceecCCHHHHHh--hCCEEEEcCCCChHHhhccCHHH
Confidence 356999999 9999999999999999988 56765321 1223333458999998 7999999999643 33333222
Q ss_pred HHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 136 MEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 136 ie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++. +- ..+|+++-|--+ |...|.++.+.-.+
T Consensus 226 l~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i 258 (409)
T PRK11790 226 LALMKPGAILINASRGTVV-DIDALADALKSGHL 258 (409)
T ss_pred HhcCCCCeEEEECCCCccc-CHHHHHHHHHcCCc
Confidence 222 21 236775555444 55555555544434
No 174
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.35 E-value=0.011 Score=53.30 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=63.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCe--Eeee-cCCCCCCeE---EcC--ccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTK--MVGG-VTPKKGGTE---HLG--LPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~--IVag-VdP~~~G~e---i~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
++||.|+|+||-.|+...+.+.+++|. .+.. -.+...|++ ..| +++-.+..+.....++|+++-+.+.+...
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~ 80 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK 80 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHH
Confidence 368999999999999999999996544 2332 233334443 222 45555544444334799999999999999
Q ss_pred HHHHHHHHcCCCEEEE
Q 030220 130 AAIMEAMEAELDLVVC 145 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~ 145 (181)
+...++.++|...|=+
T Consensus 81 ~~~p~~~~~G~~VIdn 96 (334)
T COG0136 81 EVEPKAAEAGCVVIDN 96 (334)
T ss_pred HHHHHHHHcCCEEEeC
Confidence 9999999999665543
No 175
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.35 E-value=0.012 Score=51.91 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=47.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeCh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
.+|.|+|+ |+.|+.+.+.+...|++|++ +|+.... +. ..+ |.+++|++. ++|++++.+|-
T Consensus 148 ktvgIiG~-G~IG~~va~~l~~fg~~V~~-~~~~~~~-~~-~~~-~~~l~ell~--~sDiv~l~~Pl 207 (314)
T PRK06932 148 STLGVFGK-GCLGTEVGRLAQALGMKVLY-AEHKGAS-VC-REG-YTPFEEVLK--QADIVTLHCPL 207 (314)
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEEE-ECCCccc-cc-ccc-cCCHHHHHH--hCCEEEEcCCC
Confidence 57999999 99999999999889999884 6764321 11 112 668999998 79999999993
No 176
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.33 E-value=0.0057 Score=53.64 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=65.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCccc--cccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPV--FNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+..+|+|+|+ |.||+.+.+.+...|..-|..+|+.... .++ .|..+ ++++.+.+. ++|++|.++|.....+
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~--~aDvVi~at~~~~~~~ 253 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLN--EADVVISATGAPHYAK 253 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHh--cCCEEEECCCCCchHH
Confidence 4578999999 9999999999888776544455654321 111 12222 235666665 7999999999887766
Q ss_pred HHHHHHHcC---CCEEEEeC------------CCCCHHHHHHHHHHhh
Q 030220 131 AIMEAMEAE---LDLVVCIT------------EGIPQHDMVINFTRVN 163 (181)
Q Consensus 131 ~~~eaie~G---Ik~IV~iT------------tG~~~ed~~~l~~~ak 163 (181)
....+++.. -+.++-++ +|+..-|+..|++.++
T Consensus 254 ~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~ 301 (311)
T cd05213 254 IVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVE 301 (311)
T ss_pred HHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHH
Confidence 666665442 23454444 2454555566665554
No 177
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.33 E-value=0.0056 Score=54.63 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=67.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC--eEEcCccccccHHHHhhccCCcEEEEeeChHHH-HHHHH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEHLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIM-- 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G--~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a-~~~~~-- 133 (181)
++|.|+|+ |+.|+.+.+.+...|++++ +.||.... ....++--.++++++++ +.|++++.+|-.-- ..++.
T Consensus 143 kTvGIiG~-G~IG~~va~~l~afgm~v~-~~d~~~~~~~~~~~~~~~~~~Ld~lL~--~sDiv~lh~PlT~eT~g~i~~~ 218 (324)
T COG0111 143 KTVGIIGL-GRIGRAVAKRLKAFGMKVI-GYDPYSPRERAGVDGVVGVDSLDELLA--EADILTLHLPLTPETRGLINAE 218 (324)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE-EECCCCchhhhccccceecccHHHHHh--hCCEEEEcCCCCcchhcccCHH
Confidence 46999999 9999999999999999998 67773322 12344555578999999 89999999986432 22222
Q ss_pred --HHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 134 --EAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 134 --eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
..++.|. .+||.+=| +.=|...|.++.+.--
T Consensus 219 ~~a~MK~ga-ilIN~aRG-~vVde~aL~~AL~~G~ 251 (324)
T COG0111 219 ELAKMKPGA-ILINAARG-GVVDEDALLAALDSGK 251 (324)
T ss_pred HHhhCCCCe-EEEECCCc-ceecHHHHHHHHHcCC
Confidence 2223344 56774433 4444445555554433
No 178
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=96.33 E-value=0.01 Score=53.48 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=65.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHh----CCeEeeecCCCC-----------------------CCeE--EcC--ccccc-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKK-----------------------GGTE--HLG--LPVFN- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~----g~~IVagVdP~~-----------------------~G~e--i~G--vPVy~- 105 (181)
+.||+|.|+ |+.|+.+.+.+.+. ++++++..|+.. .|+. +.| +.|+.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 358999999 99999999988873 577885432111 1111 233 56664
Q ss_pred -cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 106 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 -sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
++++++ .+.++|+++.++......+.+..++++|.+.|++ +
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~i-S 122 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLF-S 122 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEe-c
Confidence 456554 2358999999999999999999999999999988 5
No 179
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.32 E-value=0.012 Score=50.65 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=57.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe---EE---------cC-------------ccccccHHHHh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT---EH---------LG-------------LPVFNSVAEAK 111 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~---ei---------~G-------------vPVy~sl~e~~ 111 (181)
.+||.|+|+ |.||..+...+...|++++. ..++..... .+ .| +.+-+++++ .
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 81 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-L 81 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-h
Confidence 467999999 99999999999988998663 333322110 00 01 233456654 4
Q ss_pred hccCCcEEEEeeChH-HHH-HHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030220 112 AETKANASVIYVPPP-FAA-AAIMEAMEAELD---LVVCITEGIPQHDMVI 157 (181)
Q Consensus 112 ~~~~~DVaIdfVPp~-~a~-~~~~eaie~GIk---~IV~iTtG~~~ed~~~ 157 (181)
+ ++|++|.++|.+ .+. .+..+ ++..++ .++.-|.+++..++.+
T Consensus 82 ~--~aD~Vieavpe~~~~k~~~~~~-l~~~~~~~~ii~s~ts~~~~s~la~ 129 (292)
T PRK07530 82 A--DCDLVIEAATEDETVKRKIFAQ-LCPVLKPEAILATNTSSISITRLAS 129 (292)
T ss_pred c--CCCEEEEcCcCCHHHHHHHHHH-HHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 4 799999999875 223 33333 333222 2333488898765433
No 180
>PLN02858 fructose-bisphosphate aldolase
Probab=96.31 E-value=0.016 Score=60.50 Aligned_cols=102 Identities=19% Similarity=0.110 Sum_probs=70.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeC-hHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVP-p~~a~~~~~ 133 (181)
.++|.++|. |+||....+.+...|+++. +.|+.... ... .|....++.+++.+ ++|++++++| ++.+.+++.
T Consensus 324 ~~~IGfIGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~Ga~~~~s~~e~~~--~aDvVi~~V~~~~~v~~Vl~ 399 (1378)
T PLN02858 324 VKRIGFIGL-GAMGFGMASHLLKSNFSVC-GYDVYKPTLVRFENAGGLAGNSPAEVAK--DVDVLVIMVANEVQAENVLF 399 (1378)
T ss_pred CCeEEEECc-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEecCChHHHHHHHh
Confidence 478999999 9999999999999999865 34433211 111 25556778888887 7999999999 777777762
Q ss_pred ---HHHHcCC--CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 134 ---EAMEAEL--DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 134 ---eaie~GI--k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.+++.-- +.+|. .+-++.....++.+.+++
T Consensus 400 g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 400 GDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred chhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh
Confidence 2333311 34555 555667777777777665
No 181
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=96.30 E-value=0.014 Score=48.62 Aligned_cols=80 Identities=19% Similarity=0.131 Sum_probs=55.1
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH-------------
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP------------- 126 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~------------- 126 (181)
||+|.|++|..|+.+++.+.+.|.++++. +... .++.-..++.++++..++|++|.+....
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~-~r~~-----~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~ 74 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVAL-TSSQ-----LDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAF 74 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEe-CCcc-----cCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHH
Confidence 58999999999999999999989988754 3321 1233334677777766789999876431
Q ss_pred -----HHHHHHHHHHHcCCCEEEE
Q 030220 127 -----FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 127 -----~a~~~~~eaie~GIk~IV~ 145 (181)
....+++.|.+.|.+.|..
T Consensus 75 ~~n~~~~~~l~~~~~~~~~~~v~~ 98 (287)
T TIGR01214 75 AVNALAPQNLARAAARHGARLVHI 98 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1444555666778765544
No 182
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.26 E-value=0.013 Score=51.63 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=63.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEe----------------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIY---------------- 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdf---------------- 122 (181)
++|+|.|++|.+|+...+.+. .++++++. ++.. .++.-.+.+.+++++.+||++|-+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~-~~~~-----~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A 73 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIAT-DRAE-----LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELA 73 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEec-cCcc-----ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHH
Confidence 359999999999999999887 56777743 3322 345666789999988899999976
Q ss_pred --eChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 123 --VPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 123 --VPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
++...+..+++.|-+.|.+.|-+-|
T Consensus 74 ~~vNa~~~~~lA~aa~~~ga~lVhiST 100 (281)
T COG1091 74 FAVNATGAENLARAAAEVGARLVHIST 100 (281)
T ss_pred HHhHHHHHHHHHHHHHHhCCeEEEeec
Confidence 4556677889999999999997733
No 183
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.25 E-value=0.036 Score=48.58 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=70.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeE-eeecCCCCCCeEE---cCcc-cc-ccH-HHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGTEH---LGLP-VF-NSV-AEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~I-VagVdP~~~G~ei---~GvP-Vy-~sl-~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
..+|+|+|. |-||+...+.+.+.|..+ +.+.|+.....+. .|+. -+ .+. .+... +.|++|+.||.....+
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi~~~~~ 79 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPIEATEE 79 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccHHHHHH
Confidence 467999997 999999999999998886 6688876532110 2221 11 122 33333 6899999999999999
Q ss_pred HHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 131 AIMEAME-AELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 131 ~~~eaie-~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
++++... .....+|.=.+.+...-+..+.+..
T Consensus 80 ~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 80 VLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred HHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 9999985 3444455445666666666666655
No 184
>PRK08223 hypothetical protein; Validated
Probab=96.24 E-value=0.027 Score=49.84 Aligned_cols=85 Identities=12% Similarity=0.025 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE------------E---------------c---Cccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE------------H---------------L---GLPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e------------i---------------~---GvPVy~-- 105 (181)
+.+|+|+|+ |-+|..+++.+...|..-+..+|....... + + .+.+|+
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 478999999 999999999999988775555555433210 0 0 122222
Q ss_pred ----cHHHHhhccCCcEEEEeeCh---HHHHHHHHHHHHcCCCEEEE
Q 030220 106 ----SVAEAKAETKANASVIYVPP---PFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp---~~a~~~~~eaie~GIk~IV~ 145 (181)
+.+++++ ++|++||.+.. +.-+.+-+.|.++|++.|.+
T Consensus 106 l~~~n~~~ll~--~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 106 IGKENADAFLD--GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred cCccCHHHHHh--CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 2445555 67777777754 45566666777777777665
No 185
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=96.23 E-value=0.033 Score=46.56 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=56.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC----eEEc---Ccccc-------ccHHHHhhccCCcEEEEeeCh
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG----TEHL---GLPVF-------NSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G----~ei~---GvPVy-------~sl~e~~~~~~~DVaIdfVPp 125 (181)
||+|.|++|..|+.+++.+.+.|.++++.-.+.... .++. ++..+ .+++++++..++|++|.+...
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~ 80 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL 80 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence 589999999999999999999899877431111100 0000 12221 235555554579999877632
Q ss_pred ------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
..+..+++.|.+.|++.+|.+++
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss 121 (328)
T TIGR01179 81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSS 121 (328)
T ss_pred cCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecc
Confidence 12455667777888887776553
No 186
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.19 E-value=0.012 Score=55.49 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=67.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-M 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~ 133 (181)
.++|.|+|+ |++|+.+.+.+...|++++ ++||..... .-.|+... +++|+.+ ++|++++.+|... ...++ .
T Consensus 140 gktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~-~l~ell~--~aDiV~l~lP~t~~t~~li~~ 214 (526)
T PRK13581 140 GKTLGIIGL-GRIGSEVAKRAKAFGMKVI-AYDPYISPERAAQLGVELV-SLDELLA--RADFITLHTPLTPETRGLIGA 214 (526)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEE-cHHHHHh--hCCEEEEccCCChHhhcCcCH
Confidence 366999999 9999999999999999987 567643211 12355444 8999988 7999999999753 33333 2
Q ss_pred HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.++. +- ..+|+++-|=-+ |...|.++.+.-.+
T Consensus 215 ~~l~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i 249 (526)
T PRK13581 215 EELAKMKPGVRIINCARGGII-DEAALAEALKSGKV 249 (526)
T ss_pred HHHhcCCCCeEEEECCCCcee-CHHHHHHHHhcCCe
Confidence 22222 21 235665555444 55555555544433
No 187
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.18 E-value=0.038 Score=46.52 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=56.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEEc--Ccccc-------ccHHHHhhccCCcEEEEeeCh----
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHL--GLPVF-------NSVAEAKAETKANASVIYVPP---- 125 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei~--GvPVy-------~sl~e~~~~~~~DVaIdfVPp---- 125 (181)
+|+|.|++|-+|+.+++.+.+.|.++++... +... ..+. ++.++ .+++++++ ++|+++.+...
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~~~~~l~~~~~--~~d~vi~~a~~~~~~ 78 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR-RNLEGLDVEIVEGDLRDPASLRKAVA--GCRALFHVAADYRLW 78 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccc-cccccCCceEEEeeCCCHHHHHHHHh--CCCEEEEeceecccC
Confidence 6999999999999999999998998775432 2221 1111 22222 23555555 68988876532
Q ss_pred ------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.+.+.+++.+|.+++
T Consensus 79 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 113 (328)
T TIGR03466 79 APDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 12345667777889888776554
No 188
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.16 E-value=0.028 Score=50.30 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=29.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
..+|+|+|+ |.+|..+++.+...|..-+..||+..
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 367999999 99999999999999986555677654
No 189
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.14 E-value=0.037 Score=45.71 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--------------E----------------cCc--ccc-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------H----------------LGL--PVF- 104 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--------------i----------------~Gv--PVy- 104 (181)
+.+|+|+|+ |-.|..+.+.+...|..-+..+|....... + ..+ ..+
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE 97 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 478999999 669999999999998884445554332100 0 011 111
Q ss_pred -------ccHHHHhhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 105 -------NSVAEAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 105 -------~sl~e~~~~~~~DVaIdfVPp-~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
++.++..+ ++|++|++..+ +.....-+.|.++++|.|.+-+.|+
T Consensus 98 ~~~~~~~~~~~~~~~--~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~ 149 (198)
T cd01485 98 EDSLSNDSNIEEYLQ--KFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGL 149 (198)
T ss_pred cccccchhhHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 12233344 67887777643 3445566777777888877766666
No 190
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.12 E-value=0.015 Score=53.55 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=67.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHH-HH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA-IM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~-~~ 133 (181)
...+|+|+|+ |+.|+.+++.+...|.+++. .+||.+.-. ...|..+. +++++++ +.|++|.++....+.+. ..
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~--~aDVVItaTG~~~vI~~~~~ 269 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAK--IGDIFITATGNKDVIRGEHF 269 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHh--cCCEEEECCCCHHHHHHHHH
Confidence 4568999999 99999999999999999554 467754211 12355444 4577776 78999999876655443 22
Q ss_pred HHHHcCCCEEEEeCCCCCH-HHHHHHHHHhhh
Q 030220 134 EAMEAELDLVVCITEGIPQ-HDMVINFTRVNI 164 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~-ed~~~l~~~ak~ 164 (181)
.+++.| .+++.+.+++. =|...|.+++..
T Consensus 270 ~~mK~G--ailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 270 ENMKDG--AIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred hcCCCC--cEEEEECCCCceeCHHHHHHHHhh
Confidence 232333 24444666665 577777776543
No 191
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.11 E-value=0.015 Score=53.03 Aligned_cols=82 Identities=13% Similarity=0.020 Sum_probs=56.7
Q ss_pred ceEEEEccCCCCcchhhHHHH-HhCCe---EeeecCCCCCCeEE--cC--ccccccHH-HHhhccCCcEEEEeeChHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAI-EYGTK---MVGGVTPKKGGTEH--LG--LPVFNSVA-EAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~-~~g~~---IVagVdP~~~G~ei--~G--vPVy~sl~-e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+||+|+|+||-.|+...+.+. +.+|. ++..-+.+..|+.+ .| +.|.+--+ +..+ ++|+++.+.+.+.+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~--~vDivffa~g~~~s~ 78 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALK--ALDIIITCQGGDYTN 78 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCccccccc--CCCEEEEcCCHHHHH
Confidence 379999999999999999888 56776 33222333333221 12 23332112 1233 799999999999999
Q ss_pred HHHHHHHHcCCCE
Q 030220 130 AAIMEAMEAELDL 142 (181)
Q Consensus 130 ~~~~eaie~GIk~ 142 (181)
+....+.++|.+.
T Consensus 79 ~~~p~~~~aG~~~ 91 (366)
T TIGR01745 79 EIYPKLRESGWQG 91 (366)
T ss_pred HHHHHHHhCCCCe
Confidence 9999999999764
No 192
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=96.07 E-value=0.013 Score=52.83 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCe----------------E---------EcC--ccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGT----------------E---------HLG--LPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~----------------e---------i~G--vPVy~-- 105 (181)
+.||.|-|+ |+.|+.+.+.+.+. +++||+..|+..... + +.| ++|+.
T Consensus 1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 468999999 99999999986653 689998655422110 0 123 45555
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
+.++++ .+.++|+++.++......+-+...+++|.+.|++ +
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~i-S 121 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI-T 121 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEe-C
Confidence 235554 3458999999999999999999999999999987 5
No 193
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.07 E-value=0.02 Score=54.98 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=60.4
Q ss_pred eeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCC---------------C-e-----EE--cCccccccH
Q 030220 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKG---------------G-T-----EH--LGLPVFNSV 107 (181)
Q Consensus 52 ~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~---------------G-~-----ei--~GvPVy~sl 107 (181)
.........|+|.|++|.+|+.+++.+.+.|++|++.+ ++.+. | . ++ .++--.+++
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 44444566799999999999999999999999987643 22110 0 0 00 111111134
Q ss_pred HHHhhccCCcEEEEeeCh----------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 108 AEAKAETKANASVIYVPP----------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 108 ~e~~~~~~~DVaIdfVPp----------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
++.+. ++|++|.+.-. ..+..+++.|.++|++.||.+++
T Consensus 154 ~~aLg--giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 154 GPALG--NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred HHHhc--CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 44444 68988877532 23556677777889988887665
No 194
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=96.06 E-value=0.032 Score=52.29 Aligned_cols=113 Identities=18% Similarity=0.093 Sum_probs=67.6
Q ss_pred CCeeeccCCceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCC---e---E-------Ec---------------
Q 030220 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG---T---E-------HL--------------- 99 (181)
Q Consensus 50 ~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G---~---e-------i~--------------- 99 (181)
.....++...||+|.|+||..|+-.++.+.++ .|++++...-.... . + +.
T Consensus 49 ~~~~~~~~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~ 128 (454)
T PLN02696 49 PGRKGWDGPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADL 128 (454)
T ss_pred CcccccCCccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCC
Confidence 33356666689999999999999888887774 68888742211110 0 0 00
Q ss_pred --Cccccc---cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhchhhhh
Q 030220 100 --GLPVFN---SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLNFIM 174 (181)
Q Consensus 100 --GvPVy~---sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~~~~~~ 174 (181)
+..|+. .+.++.+..++|++|..+--.+...-..+|+++|.+..+. =|+.-|..|.+||
T Consensus 129 ~~~~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALA----------------NKESLV~aG~lI~ 192 (454)
T PLN02696 129 DDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALA----------------NKETLIAGGPFVL 192 (454)
T ss_pred CCCcEEEECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEe----------------cHHHHHhhHHHHH
Confidence 112333 3444444345666666666666666666666666554433 2566667777777
Q ss_pred hhhc
Q 030220 175 KLTR 178 (181)
Q Consensus 175 ~~~~ 178 (181)
++.+
T Consensus 193 ~~ak 196 (454)
T PLN02696 193 PLAK 196 (454)
T ss_pred HHHH
Confidence 6644
No 195
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=96.06 E-value=0.03 Score=51.43 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=57.9
Q ss_pred CCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC-CeEE------cCcccc-cc-HHHHhhccCCcE
Q 030220 48 ASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEH------LGLPVF-NS-VAEAKAETKANA 118 (181)
Q Consensus 48 ~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~-G~ei------~GvPVy-~s-l~e~~~~~~~DV 118 (181)
..++.=+-.+.+||+|.|++|-.|+.+++.+.+.|.+|++..+.... .... ..+... .+ +++.+. ++|+
T Consensus 110 ~~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~--~~D~ 187 (436)
T PLN02166 110 GRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILL--EVDQ 187 (436)
T ss_pred CCCCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECcccccccc--CCCE
Confidence 33444344555899999999999999999999999998864222110 0000 012111 12 233333 6898
Q ss_pred EEEeeC----hH--------------HHHHHHHHHHHcCCCEEEE
Q 030220 119 SVIYVP----PP--------------FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 119 aIdfVP----p~--------------~a~~~~~eaie~GIk~IV~ 145 (181)
++-+.- .. ....+++.|.++|++.|+.
T Consensus 188 ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~ 232 (436)
T PLN02166 188 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLT 232 (436)
T ss_pred EEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 877652 11 1456677777889865554
No 196
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=96.05 E-value=0.042 Score=47.02 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=55.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--------------EE--cCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--------------EH--LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--------------ei--~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
+||+|.|++|-.|+.+++.+.+.|.++++......... +. .++--..+++++++..++|++|.+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 47999999999999999999999999886421111000 00 011111134555544468999887
Q ss_pred eCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 123 VPP------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 123 VPp------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
... .....+++.|.++|++.+|.+++
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 124 (338)
T PRK10675 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSS 124 (338)
T ss_pred CccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 421 13445667777789988776554
No 197
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.02 E-value=0.034 Score=47.29 Aligned_cols=87 Identities=23% Similarity=0.228 Sum_probs=60.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cC-CCCCC--eEEcCccccc-cHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VT-PKKGG--TEHLGLPVFN-SVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-Vd-P~~~G--~ei~GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
++++.|.|. |++|......+...|.+++-+ -+ |++.. .+..+.-+-. +.+++.+ ..||+++.||-++..+++
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~--~aDVVvLAVP~~a~~~v~ 77 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAA--LADVVVLAVPFEAIPDVL 77 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHh--cCCEEEEeccHHHHHhHH
Confidence 355667776 999999999999999997755 33 22211 0112222333 5677776 799999999999999999
Q ss_pred HHHHHc-CCCEEEEeC
Q 030220 133 MEAMEA-ELDLVVCIT 147 (181)
Q Consensus 133 ~eaie~-GIk~IV~iT 147 (181)
.+.-+. |=|.||-.|
T Consensus 78 ~~l~~~~~~KIvID~t 93 (211)
T COG2085 78 AELRDALGGKIVIDAT 93 (211)
T ss_pred HHHHHHhCCeEEEecC
Confidence 999874 545555534
No 198
>PLN02928 oxidoreductase family protein
Probab=96.02 E-value=0.022 Score=51.04 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=63.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---------------cCccccccHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---------------LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---------------~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
..+|.|+|+ |++|+.+.+.+...|++|+ ++||....... .+. -+.+++|++. ++|++++.
T Consensus 159 gktvGIiG~-G~IG~~vA~~l~afG~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~--~aDiVvl~ 233 (347)
T PLN02928 159 GKTVFILGY-GAIGIELAKRLRPFGVKLL-ATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG--EADIVVLC 233 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCCChhhhhhhccccccccccccccC-cccCHHHHHh--hCCEEEEC
Confidence 367999999 9999999999999999988 45654211000 011 3568999998 79999999
Q ss_pred eChHH-HHHHHHHHHHcCC---CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 123 VPPPF-AAAAIMEAMEAEL---DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 123 VPp~~-a~~~~~eaie~GI---k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
+|-.. ....+.+..=+.. ..+|+++-| ..-|...|.++.+.-
T Consensus 234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG-~lVde~AL~~AL~~g 279 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSSMKKGALLVNIARG-GLLDYDAVLAALESG 279 (347)
T ss_pred CCCChHhhcccCHHHHhcCCCCeEEEECCCc-cccCHHHHHHHHHcC
Confidence 99432 2233322222222 246775555 333445555554433
No 199
>PLN02858 fructose-bisphosphate aldolase
Probab=95.98 E-value=0.017 Score=60.42 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=72.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM-- 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~-- 133 (181)
-.||.++|. |+||....+.+.+.|+++.+ ..+|.+... .-.|..+.++..|+.+ ++|+++.++|...+.+.+.
T Consensus 4 ~~~IGfIGL-G~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~--~advVi~~l~~~~~v~~V~~g 80 (1378)
T PLN02858 4 AGVVGFVGL-DSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAK--DAAALVVVLSHPDQVDDVFFG 80 (1378)
T ss_pred CCeEEEEch-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEEcCChHHHHHHHhc
Confidence 367999999 99999999999999999653 344443221 0147788899999988 8999999999876655442
Q ss_pred --HHHHcCC--CEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 134 --EAMEAEL--DLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 134 --eaie~GI--k~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.+++.-- +.+|. .+=++.+...++.+..++..
T Consensus 81 ~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 81 DEGAAKGLQKGAVILI-RSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred hhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHHHhcC
Confidence 2333311 23555 55566677777777765544
No 200
>PLN02240 UDP-glucose 4-epimerase
Probab=95.95 E-value=0.066 Score=46.05 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=56.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC-C--------------Ce--EE--cCccccccHHHHhhccCCcEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-G--------------GT--EH--LGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~-~--------------G~--ei--~GvPVy~sl~e~~~~~~~DVa 119 (181)
.+|+|.|++|..|+.+++.+.+.|.+|++...... . +. +. .++.=..+++++.++.++|++
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~v 85 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDAV 85 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCEE
Confidence 57999999999999999999998999876422110 0 00 00 112111235555554578998
Q ss_pred EEeeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 120 VIYVPP------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 120 IdfVPp------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
|.+... .....+++.|.+.|++.+|.+++
T Consensus 86 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 86 IHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred EEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 887632 12345666777789887776554
No 201
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=95.91 E-value=0.024 Score=51.36 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=66.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC----------------eE---------EcC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG----------------TE---------HLG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G----------------~e---------i~G--vPVy~--sl~ 108 (181)
.||.|-|+ |+.|+.+.+.+.+. ++++|+..|+.... .+ +.| ++|+. +++
T Consensus 3 ~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (343)
T PRK07729 3 TKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK 81 (343)
T ss_pred eEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh
Confidence 58999999 99999999987764 79999865432111 00 122 55663 466
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
+++ .+.++|+++.++......+.+...+++|.+.|++ +
T Consensus 82 ~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i-S 120 (343)
T PRK07729 82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVIL-T 120 (343)
T ss_pred hCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEe-C
Confidence 664 3358999999999999999999999999999988 5
No 202
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.90 E-value=0.019 Score=52.70 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=60.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeec-CCCCCC--e---E-------Ec---------------Cccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKGG--T---E-------HL---------------GLPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagV-dP~~~G--~---e-------i~---------------GvPVy~-- 105 (181)
++||+|.|+||..|+.+.+.+.+. .|+|++.. +.+... + + +. ++.|+.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 368999999999999998887764 78988754 222100 0 0 00 122333
Q ss_pred -cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 -SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 -sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.+.++.+..++|+++..++-.+...-+..|+++|.+....
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA 121 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA 121 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence 2555555446899999998888888888999999776663
No 203
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=95.89 E-value=0.024 Score=51.05 Aligned_cols=86 Identities=16% Similarity=0.082 Sum_probs=64.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe----------------E---------EcC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT----------------E---------HLG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~----------------e---------i~G--vPVy~--sl~ 108 (181)
.||.|-|+ |+.|+.+.+.+.+. +++||+..|+..... + +.| +.|+. +++
T Consensus 3 ~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (331)
T PRK15425 3 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 81 (331)
T ss_pred eEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh
Confidence 58999999 99999999987764 899998655322110 0 122 55553 466
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++ .+.++|+++.++......+-+...+++|.+.|++
T Consensus 82 ~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i 119 (331)
T PRK15425 82 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119 (331)
T ss_pred hCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEe
Confidence 653 3458999999999999999999999999999887
No 204
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.89 E-value=0.028 Score=48.21 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeC----------hH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP----------PP-- 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVP----------p~-- 126 (181)
+||+|.|++|-.|+.+++.+.+.| ++++ ++....- ...++.=...++++++++++|++|-+.- |+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~-~~~~~~~-~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~ 77 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIA-LDVHSTD-YCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFA 77 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEE-ecccccc-ccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHHH
Confidence 479999999999999999998888 6653 4432210 0112332335666676667999886531 22
Q ss_pred ------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 ------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 ------~a~~~~~eaie~GIk~IV~iTt 148 (181)
....+++.|.++|++.|.. ++
T Consensus 78 ~~~N~~~~~~l~~aa~~~g~~~v~~-Ss 104 (299)
T PRK09987 78 QLLNATSVEAIAKAANEVGAWVVHY-ST 104 (299)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEE-cc
Confidence 2345677777889876654 54
No 205
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.86 E-value=0.032 Score=49.75 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=61.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--------------------E-EcCccccccHHHHhhccC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--------------------E-HLGLPVFNSVAEAKAETK 115 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--------------------e-i~GvPVy~sl~e~~~~~~ 115 (181)
..+|.|+|+ |-||+-++..+...|++++. .++|..... . ..-+....+++++.+ +
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~--~ 83 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA--D 83 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc--C
Confidence 467999999 99999999999999999763 343332110 0 012344557888777 8
Q ss_pred CcEEEEeeChHHH-HHHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030220 116 ANASVIYVPPPFA-AAAIMEAMEAELD---LVVCITEGIPQHDMVI 157 (181)
Q Consensus 116 ~DVaIdfVPp~~a-~~~~~eaie~GIk---~IV~iTtG~~~ed~~~ 157 (181)
+|+++-.+|.... ...+-.-++.-.+ .+..-|.+++..++..
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~ 129 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA 129 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH
Confidence 9999999996653 3333333333332 2333367777766654
No 206
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.83 E-value=0.0045 Score=47.50 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=60.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCc----cccccHHHHhhccCCcEEEEeeChHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGL----PVFNSVAEAKAETKANASVIYVPPPFA- 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~Gv----PVy~sl~e~~~~~~~DVaIdfVPp~~a- 128 (181)
..+|+|+|+ |.||+.+++.+.+.|...|..+|+.... ++. .+. ..+.+.++..+ ++|++|.++|+...
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGMKP 95 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCCCC
Confidence 467999999 9999999999988764444455544311 111 121 23446666655 79999999999874
Q ss_pred -HH--HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 129 -AA--AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 129 -~~--~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.+ .....+..|. .++..++. +... .+.+.+++..+
T Consensus 96 ~~~~~~~~~~~~~~~-~v~D~~~~-~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 96 GDELPLPPSLLKPGG-VVYDVVYN-PLET--PLLKEARALGA 133 (155)
T ss_pred CCCCCCCHHHcCCCC-EEEEcCcC-CCCC--HHHHHHHHCCC
Confidence 11 1223344444 34433332 3322 56566655444
No 207
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=95.83 E-value=0.045 Score=45.85 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=57.9
Q ss_pred EEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeC-----------hH----
Q 030220 62 ICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP-----------PP---- 126 (181)
Q Consensus 62 iVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVP-----------p~---- 126 (181)
+|.|++|-.|+.+++.+.+.|.+++...+... .++--+.+++++++..++|++|-+.. +.
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~~-----~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~ 75 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHKE-----LDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIR 75 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecccc-----CCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHH
Confidence 47899999999999999998888775443322 23434456888777778999998751 11
Q ss_pred ----HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 ----FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 ----~a~~~~~eaie~GIk~IV~iTt 148 (181)
....+++.|.++|++.+|.+++
T Consensus 76 ~n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 76 ENLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HHhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 2555788888889976665544
No 208
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=95.82 E-value=0.03 Score=51.57 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=64.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCC------------------------CCe--EEcC--ccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKK------------------------GGT--EHLG--LPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~------------------------~G~--ei~G--vPVy~-- 105 (181)
.||+|.|+ |+.|+.+.+.+.+. .+++++.-|+.. .|+ .+.| ++|+.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~ 139 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDR 139 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcC
Confidence 68999999 99999999988765 467885432110 111 1233 56665
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++++ .+.++|+++.++......+.+...+++|.+.|++
T Consensus 140 dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~i 180 (395)
T PLN03096 140 NPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 180 (395)
T ss_pred CcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEe
Confidence 366664 3358999999999999999999999999999987
No 209
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.78 E-value=0.026 Score=49.11 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=46.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE-------------EcC-------------ccccccHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-------------HLG-------------LPVFNSVAEA 110 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e-------------i~G-------------vPVy~sl~e~ 110 (181)
.++|.|+|+ |.||..+...+.+.|++|+ .+|+.... +. -.| +.+..+++++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a 79 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA 79 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence 357999997 9999999999999999866 44543210 00 012 3455688887
Q ss_pred hhccCCcEEEEeeChH
Q 030220 111 KAETKANASVIYVPPP 126 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~ 126 (181)
.+ ++|+++..+|..
T Consensus 80 ~~--~ad~Vi~avpe~ 93 (308)
T PRK06129 80 VA--DADYVQESAPEN 93 (308)
T ss_pred hC--CCCEEEECCcCC
Confidence 77 799999999976
No 210
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.78 E-value=0.025 Score=52.51 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHH-HHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~-~~~ 133 (181)
...+|+|+|+ |++|+.+++.+...|.+|+. .+||.+.-+ ...|..+. +++++.+ .+|++|.++....+.+ -..
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~eal~--~aDVVI~aTG~~~vI~~~~~ 286 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TMEEAAE--LGDIFVTATGNKDVITAEHM 286 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHHHHHh--CCCEEEECCCCHHHHHHHHH
Confidence 4568999999 99999999999999999553 466655221 12366553 5778776 7999999986554443 222
Q ss_pred HHHHcCCCEEEEeCCCCCH-HHHHHHHHHh
Q 030220 134 EAMEAELDLVVCITEGIPQ-HDMVINFTRV 162 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~-ed~~~l~~~a 162 (181)
++++.| .+++...++.. -|+..|++.+
T Consensus 287 ~~mK~G--ailiNvG~~d~Eid~~~L~~~~ 314 (425)
T PRK05476 287 EAMKDG--AILANIGHFDNEIDVAALEELA 314 (425)
T ss_pred hcCCCC--CEEEEcCCCCCccChHHHhhcC
Confidence 333333 34443555554 4566666654
No 211
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.78 E-value=0.011 Score=52.80 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=76.1
Q ss_pred ceEEEEccCCCCcchhhHHHHH--hCCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHH----
Q 030220 59 TRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFA---- 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~--~g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a---- 128 (181)
++|+|+| -++|+.....+.. .+++++|...-+..- .+ -.|+|.|.+++|+++ ++|++-+.|-...+
T Consensus 5 ksVvV~G--trFGq~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh~~GVply~~~eelpd--~idiACVvVrsai~Gg~G 80 (361)
T COG4693 5 KSVVVCG--TRFGQFYLAAFAAAPPRFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGGQG 80 (361)
T ss_pred ceEEEec--chHHHHHHHHhccCCCCceeehhhhcccHHHHHHHHHhCCccccCHhhCCC--CCCeEEEEEeeeeecCCc
Confidence 3899999 5899988887777 389999766644321 11 269999999999998 89999888765543
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 129 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.+.++.+++.||..+.= -=+-.+|+.++.++|++-
T Consensus 81 s~larall~RGi~VlqE--HPl~p~di~~l~rlA~rq 115 (361)
T COG4693 81 SALARALLARGIHVLQE--HPLHPRDIQDLLRLAERQ 115 (361)
T ss_pred HHHHHHHHHcccHHHHh--CCCCHHHHHHHHHHHHHh
Confidence 57888888999987642 335567888888888653
No 212
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.77 E-value=0.034 Score=42.50 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=59.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCc-cccc----------cHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-PVFN----------SVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~Gv-PVy~----------sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+.||+|+|+ |..|+.+++.+...|..-+-.+|+.....+..+- +.|. .+++.+.+..|++-+...+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 578999999 9999999999999888644455655433111110 1111 244444445666666666666
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
...+..++.+ .+...|++.+.. .+....|.+++++.
T Consensus 81 ~~~~~~~~~~-~~~d~vi~~~d~--~~~~~~l~~~~~~~ 116 (135)
T PF00899_consen 81 IDEENIEELL-KDYDIVIDCVDS--LAARLLLNEICREY 116 (135)
T ss_dssp CSHHHHHHHH-HTSSEEEEESSS--HHHHHHHHHHHHHT
T ss_pred cccccccccc-cCCCEEEEecCC--HHHHHHHHHHHHHc
Confidence 6555555555 356666653333 33344455555443
No 213
>PRK06182 short chain dehydrogenase; Validated
Probab=95.74 E-value=0.14 Score=42.56 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.+++|.|++|.+|+.+++.+.+.|.++++ ++.+.. .++++.+. +++ +..|...++.+.+.+++..
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~-~~r~~~-----------~l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYG-AARRVD-----------KMEDLASL-GVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHhC-CCeEEEeeCCCHHHHHHHHHHHH
Confidence 457999999999999999999999999874 333221 11122111 232 4467788888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 70 ~~~~~id~li~-~ag~ 84 (273)
T PRK06182 70 AEEGRIDVLVN-NAGY 84 (273)
T ss_pred HhcCCCCEEEE-CCCc
Confidence 65 6888888 5665
No 214
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.71 E-value=0.14 Score=41.02 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.+|+|.|++|..|+.+++.+.+.|.+++..+...... .. .+...+.+. ..++. +..|...++.+.+.+++..
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~--~~--~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~ 79 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEA--AE--ELVEAVEAL--GRRAQAVQADVTDKAALEAAVAAAV 79 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHH--HH--HHHHHHHhc--CCceEEEECCcCCHHHHHHHHHHHH
Confidence 46899999999999999999999999876544433211 00 011111111 01222 3456667777777777665
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..|+. ..|
T Consensus 80 ~~~~~id~vi~-~ag 93 (249)
T PRK12825 80 ERFGRIDILVN-NAG 93 (249)
T ss_pred HHcCCCCEEEE-CCc
Confidence 53 6888877 555
No 215
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.70 E-value=0.043 Score=48.80 Aligned_cols=104 Identities=10% Similarity=0.083 Sum_probs=65.4
Q ss_pred CceEEEEccCCCCcchhhHHHH-HhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHH-HHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA-AAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~-~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~-~~~~ 133 (181)
..+|.|+|+ |+.|+.+.+.+. .+|++|+ ..||..... +-.|+. |.+++|+++ ++|++++.+|-...- ..+.
T Consensus 145 gktvGIiG~-G~IG~~va~~l~~~fgm~V~-~~~~~~~~~~~~~~~~~-~~~l~ell~--~sDvv~lh~plt~~T~~li~ 219 (323)
T PRK15409 145 HKTLGIVGM-GRIGMALAQRAHFGFNMPIL-YNARRHHKEAEERFNAR-YCDLDTLLQ--ESDFVCIILPLTDETHHLFG 219 (323)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHhcCCCEEE-EECCCCchhhHHhcCcE-ecCHHHHHH--hCCEEEEeCCCChHHhhccC
Confidence 366999999 999999999987 6899988 456543211 112443 569999998 899999999954432 2221
Q ss_pred -HHHH-cCCCE-EEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 -EAME-AELDL-VVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 -eaie-~GIk~-IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.++ .+-.. +|+ |.-=+.-|...|.++.+.-.+
T Consensus 220 ~~~l~~mk~ga~lIN-~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 220 AEQFAKMKSSAIFIN-AGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred HHHHhcCCCCeEEEE-CCCccccCHHHHHHHHHcCCe
Confidence 1222 23233 566 444344456666666655444
No 216
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.70 E-value=0.019 Score=50.71 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=47.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|+ |+.|+.+.+.+...|++|+ ++|+.... + +.. +.+++|+++ +.|++++.+|-.
T Consensus 148 gktvgIiG~-G~IG~~vA~~l~~fgm~V~-~~~~~~~~-~--~~~-~~~l~ell~--~sDiv~l~lPlt 208 (317)
T PRK06487 148 GKTLGLLGH-GELGGAVARLAEAFGMRVL-IGQLPGRP-A--RPD-RLPLDELLP--QVDALTLHCPLT 208 (317)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCCCc-c--ccc-ccCHHHHHH--hCCEEEECCCCC
Confidence 357999999 9999999999998999988 45654321 1 111 448999998 799999999953
No 217
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.68 E-value=0.042 Score=46.87 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=52.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE----------------------------cCc--cccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------------------LGL--PVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei----------------------------~Gv--PVy~-- 105 (181)
+.+|+|+|+ |-.|..+++.+...|..-+..+|+....... ..+ ..++
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR 110 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence 478999999 9999999999999887644445544322110 011 1111
Q ss_pred ----cHHHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEE
Q 030220 106 ----SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVC 145 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~ 145 (181)
+++++.+ ++|++|+++-...+.. +-+.|.+++++.|.+
T Consensus 111 i~~~~~~~~~~--~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 111 LDDDELAALIA--GHDLVLDCTDNVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCHHHHHHHHh--cCCEEEecCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 1233344 6777777776555544 445566777777765
No 218
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=95.65 E-value=0.038 Score=49.52 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=76.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecC--CCCCCeEE--------cCccccccHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT--PKKGGTEH--------LGLPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd--P~~~G~ei--------~GvPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
.+|++.|. |..|....+.+.+. ++++|+.++ +.+.|+++ .|+-+.++++.......-+++.+-.-|+
T Consensus 3 ~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~~- 80 (350)
T COG3804 3 LRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLPS- 80 (350)
T ss_pred ceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceeccccceeeecccch-
Confidence 56888898 99999888887775 999999755 55556432 3566666776665432234444444443
Q ss_pred HHHHHHHHHHcCCCEEEE-----eCCCCCHHHHHHHHHHhhhhchh
Q 030220 128 AAAAIMEAMEAELDLVVC-----ITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~-----iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.+..++++.+|+..|-- +--+.+.+.++|+.++|++=..+
T Consensus 81 -~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~ 125 (350)
T COG3804 81 -VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNA 125 (350)
T ss_pred -HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCc
Confidence 77888999999987643 44678899999999999887664
No 219
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=95.61 E-value=0.02 Score=51.42 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=70.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
..++|-.+|. |.||...++.+++.|++ .|..+++.+... +-.|-.|+++..|+.+ ++|++|..+|.......+-.
T Consensus 34 s~~~iGFIGL-G~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~v~~ 110 (327)
T KOG0409|consen 34 SKTRIGFIGL-GNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAE--DSDVVITMVPNPKDVKDVLL 110 (327)
T ss_pred ccceeeEEee-ccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHh--hcCEEEEEcCChHhhHHHhc
Confidence 4688999999 99999999999999999 455666555321 1258899999999988 89999988886544333322
Q ss_pred HHHcCC--------CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 135 AMEAEL--------DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 135 aie~GI--------k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
- +.|+ +..|- .+=+...-..+|.+.++.
T Consensus 111 g-~~Gvl~g~~~g~~~~vD-mSTidp~~s~ei~~~i~~ 146 (327)
T KOG0409|consen 111 G-KSGVLSGIRPGKKATVD-MSTIDPDTSLEIAKAISN 146 (327)
T ss_pred C-CCcceeeccCCCceEEe-ccccCHHHHHHHHHHHHh
Confidence 1 3332 22233 344555666666666543
No 220
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.58 E-value=0.082 Score=46.21 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=59.0
Q ss_pred eeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe----------E--EcCcc-ccc------cHHHHh
Q 030220 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT----------E--HLGLP-VFN------SVAEAK 111 (181)
Q Consensus 52 ~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~----------e--i~GvP-Vy~------sl~e~~ 111 (181)
+.+.-+++||+|.|++|-.|+.+++.+++.|.+|++... +..... . ...+. +.. .+++++
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~ 88 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC 88 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh
Confidence 345666789999999999999999999999999875422 110000 0 00111 111 244445
Q ss_pred hccCCcEEEEeeC----h--------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 112 AETKANASVIYVP----P--------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 112 ~~~~~DVaIdfVP----p--------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
+ ++|++|-+.- + .....+++.|.+.|++.+|-++
T Consensus 89 ~--~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 89 K--NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred h--CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 5 6898877742 1 1244677788888998766544
No 221
>PLN02214 cinnamoyl-CoA reductase
Probab=95.56 E-value=0.088 Score=46.08 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=59.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCC-----------CeEE----cCccccccHHHHhhccCCcEEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG-----------GTEH----LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~-----------G~ei----~GvPVy~sl~e~~~~~~~DVaI 120 (181)
++++|+|.|++|-.|+.+++.+.+.|.+|++.+. +... +..+ .++.-..+++++++ ++|++|
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID--GCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh--cCCEEE
Confidence 4567999999999999999999999999876432 2110 0001 11111224566666 689888
Q ss_pred EeeCh-------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 121 IYVPP-------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 121 dfVPp-------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
-+..+ .....+++.|.++|++.+|.+++
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 87643 13456677788889987776554
No 222
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.54 E-value=0.018 Score=53.44 Aligned_cols=86 Identities=17% Similarity=0.104 Sum_probs=63.9
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe-------------------EE--------cC--ccccc--c
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT-------------------EH--------LG--LPVFN--S 106 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~-------------------ei--------~G--vPVy~--s 106 (181)
.||.|.|+ |+.|+.+.+...+ .+++||+..||..... ++ .| +.|+. +
T Consensus 86 ~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 86 TKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred eEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCC
Confidence 59999999 9999999998876 5899998766643221 00 12 34442 3
Q ss_pred HHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 l~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++. ++.++|+++.++......+.+...+++|.|.||+
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVI 204 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVI 204 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEE
Confidence 44443 3347999999999988899999999999988877
No 223
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.54 E-value=0.076 Score=45.27 Aligned_cols=88 Identities=15% Similarity=0.057 Sum_probs=56.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE------------E----------------cC--ccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE------------H----------------LG--LPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e------------i----------------~G--vPVy~-- 105 (181)
..+|+|+|+ |-+|..+++.+...|..-+..+|+...... + .+ +..++
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK 102 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence 378999999 999999999999988774445565443310 0 01 11221
Q ss_pred ----cHHHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCC
Q 030220 106 ----SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITE 148 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~iTt 148 (181)
+++++++ ++|++|+++-...+.. .-+.|.++|+|.|.+-+.
T Consensus 103 i~~~~~~~~~~--~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~ 148 (240)
T TIGR02355 103 LDDAELAALIA--EHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAI 148 (240)
T ss_pred CCHHHHHHHhh--cCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 1334444 6788888876655544 446677888888766433
No 224
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.54 E-value=0.075 Score=46.23 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=59.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCC----CCCeEE---cC------ccccccHHHHhhccCCcEEEEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPK----KGGTEH---LG------LPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~----~~G~ei---~G------vPVy~sl~e~~~~~~~DVaIdfV 123 (181)
++||+|+|+ |.+|......+.+.|.++... -++. ..|..+ .| ++++.+.++ .. .+|++|++|
T Consensus 5 ~m~I~IiG~-GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~D~vilav 80 (313)
T PRK06249 5 TPRIGIIGT-GAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-MP--PCDWVLVGL 80 (313)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-cC--CCCEEEEEe
Confidence 368999999 999999998888878775432 1220 011111 11 334444443 23 689999999
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEeCCCCCHHHH
Q 030220 124 PPPFAAAAIMEAMEAE--LDLVVCITEGIPQHDM 155 (181)
Q Consensus 124 Pp~~a~~~~~eaie~G--Ik~IV~iTtG~~~ed~ 155 (181)
+.....++++.+...- -..|+.+.-|+..++.
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~ 114 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQ 114 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 9998887777665431 1236666789876543
No 225
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.52 E-value=0.082 Score=40.60 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.4
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+|+|+|+ |.+|..+++.+...|..-+..+|+..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 5899999 99999999999999886444666654
No 226
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.50 E-value=0.029 Score=48.69 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=63.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-------------E------------EcCccccccHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-------------E------------HLGLPVFNSVAEA 110 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-------------e------------i~GvPVy~sl~e~ 110 (181)
+..+|.|+|+ |.||.-++..+...|++++. .++|..... + ..-+.+.+++++
T Consensus 4 ~~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 81 (286)
T PRK07819 4 AIQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD- 81 (286)
T ss_pred CccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence 3468999999 99999999988888999663 455443211 0 012335667754
Q ss_pred hhccCCcEEEEeeChHHHHHHHH-HHHHc-----CCCEEEEeCCCCCHHHHHHHHH
Q 030220 111 KAETKANASVIYVPPPFAAAAIM-EAMEA-----ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~~a~~~~~-eaie~-----GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
.+ ++|+++-.+|.+...+-.. ..++. +.-.+-+ |++++..++..-..
T Consensus 82 ~~--~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~sn-TS~~~~~~la~~~~ 134 (286)
T PRK07819 82 FA--DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASN-TSSIPIMKLAAATK 134 (286)
T ss_pred hC--CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEEC-CCCCCHHHHHhhcC
Confidence 45 7999999999876544332 22233 3333333 89999988876433
No 227
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=95.45 E-value=0.056 Score=44.78 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=53.1
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe-EEcCcccc--ccHHHHhhccCCcEEEEeeCh-----------
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-EHLGLPVF--NSVAEAKAETKANASVIYVPP----------- 125 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~-ei~GvPVy--~sl~e~~~~~~~DVaIdfVPp----------- 125 (181)
|+|.|++|-.|+.+++.+.+.|.+|++... +..... ...++..+ ....+.+. ++|++|.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~~~~~~~~~ 78 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIADKRWTEER 78 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcC--CCCEEEECCCCCcccccCCHHH
Confidence 578999999999999999999999886432 222111 00111111 23334444 79999877732
Q ss_pred ---------HHHHHHHHHHHHcCCC-EEEEeC
Q 030220 126 ---------PFAAAAIMEAMEAELD-LVVCIT 147 (181)
Q Consensus 126 ---------~~a~~~~~eaie~GIk-~IV~iT 147 (181)
..++.+++.|.++|++ .+++.+
T Consensus 79 ~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~ 110 (292)
T TIGR01777 79 KQEIRDSRIDTTRALVEAIAAAEQKPKVFISA 110 (292)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCCCceEEEEe
Confidence 1156777788888984 444434
No 228
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.42 E-value=0.0057 Score=49.72 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=55.3
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe---E----------------------EcCccccccHHHHhhc
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT---E----------------------HLGLPVFNSVAEAKAE 113 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~---e----------------------i~GvPVy~sl~e~~~~ 113 (181)
||.|+|+ |.||+.+...+...|++++- ..|++.... . ...+.+..+++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-- 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-- 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC--
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh--
Confidence 6999999 99999999999999999662 333332110 0 12345566777754
Q ss_pred cCCcEEEEeeChHHH-----HHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030220 114 TKANASVIYVPPPFA-----AAAIMEAMEAELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 114 ~~~DVaIdfVPp~~a-----~~~~~eaie~GIk~IV~iTtG~~~ed~~~l 158 (181)
++|++|-.+|.+.- +.-++.......-..-+ |.+++..++..-
T Consensus 78 -~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn-TSsl~i~~la~~ 125 (180)
T PF02737_consen 78 -DADLVIEAIPEDLELKQELFAELDEICPPDTILASN-TSSLSISELAAA 125 (180)
T ss_dssp -TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE---SSS-HHHHHTT
T ss_pred -hhheehhhccccHHHHHHHHHHHHHHhCCCceEEec-CCCCCHHHHHhc
Confidence 68999999987652 22333333333444455 789988887543
No 229
>PRK08328 hypothetical protein; Provisional
Probab=95.38 E-value=0.089 Score=44.43 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=28.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |-.|..+++.+...|..-+-.+|+..
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 367999999 99999999999998877444566554
No 230
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=95.34 E-value=0.2 Score=40.61 Aligned_cols=84 Identities=21% Similarity=0.162 Sum_probs=56.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE---EEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV---aIdfVPp~~a~~~~~ea 135 (181)
+.++|.|++|.+|+.+++.+.+.|.+++...+..... ... .++++.+ ...++ ..|....+.+.+.++++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~----~~~---~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPR----RVK---WLEDQKA-LGFDFIASEGNVGDWDSTKAAFDKV 75 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHH----HHH---HHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4588999999999999999999999988654432211 001 1222211 12333 36778888888888887
Q ss_pred HHc--CCCEEEEeCCCCC
Q 030220 136 MEA--ELDLVVCITEGIP 151 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~~ 151 (181)
.+. ++..+|+ ..|..
T Consensus 76 ~~~~~~id~li~-~ag~~ 92 (246)
T PRK12938 76 KAEVGEIDVLVN-NAGIT 92 (246)
T ss_pred HHHhCCCCEEEE-CCCCC
Confidence 765 6888888 66763
No 231
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.29 E-value=0.1 Score=42.79 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeE--------------E-------cCccccccHHHHhhccCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTE--------------H-------LGLPVFNSVAEAKAETKA 116 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~e--------------i-------~GvPVy~sl~e~~~~~~~ 116 (181)
+||.|+|. |..|-..+-.+.+.|++++| .+|+.+...- + ..+-...+.+++++ ++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~--~a 77 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK--DA 77 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--H-
T ss_pred CEEEEECC-CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--cc
Confidence 58999999 99999888889999999886 2333321100 0 12344456777666 79
Q ss_pred cEEEEeeCh----------HHHHHHHHHHHHcCCC-EEEEeCC----CCCHHHHHHHHHHh
Q 030220 117 NASVIYVPP----------PFAAAAIMEAMEAELD-LVVCITE----GIPQHDMVINFTRV 162 (181)
Q Consensus 117 DVaIdfVPp----------~~a~~~~~eaie~GIk-~IV~iTt----G~~~ed~~~l~~~a 162 (181)
|+.+++||- ..+.++++...++--+ .+|++-+ |.+++-+..+.+..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhh
Confidence 999999983 3456666666654222 3333343 55554444555544
No 232
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=95.20 E-value=0.065 Score=48.90 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=61.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-----CCeEeeecCCCCCCe----------------------------------EEc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTPKKGGT----------------------------------EHL 99 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-----g~~IVagVdP~~~G~----------------------------------ei~ 99 (181)
.||.|-|+ |+.|+.+.+.+.+. +++||+..||...-. .++
T Consensus 4 ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in 82 (361)
T PTZ00434 4 IKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN 82 (361)
T ss_pred eEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence 58999999 99999999987763 689998777521100 012
Q ss_pred C--cccc-c--cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 100 G--LPVF-N--SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 100 G--vPVy-~--sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
| +.++ . +.++++ .+.++|++|.++-.-...+-+..=+++|.|.|++ |.
T Consensus 83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVii-SA 136 (361)
T PTZ00434 83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVI-SA 136 (361)
T ss_pred CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEE-CC
Confidence 3 3444 2 566664 3458999997776666666666677899999987 53
No 233
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.27 Score=40.19 Aligned_cols=85 Identities=20% Similarity=0.190 Sum_probs=54.7
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~e 134 (181)
-+..+++|.|++|..|+.+++.+.+.|.+++ .++..... . + .+.+...+.++. +..|+..++...+++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~-~~~r~~~~--~---~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVH-VCDVSEAA--L---A---ATAARLPGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEeCCHHH--H---H---HHHHHHhcCceEEEEccCCCHHHHHHHHHH
Confidence 3567899999999999999999999999966 44432211 1 0 111111111112 45577778888887777
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..|+. ..|.
T Consensus 80 ~~~~~~~~d~vi~-~ag~ 96 (264)
T PRK12829 80 AVERFGGLDVLVN-NAGI 96 (264)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 6553 7888887 4444
No 234
>PRK07411 hypothetical protein; Validated
Probab=95.17 E-value=0.11 Score=47.40 Aligned_cols=90 Identities=12% Similarity=-0.027 Sum_probs=57.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE----------------------------cC--ccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------------------LG--LPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei----------------------------~G--vPVy~-- 105 (181)
+.+|+|+|+ |-+|..+++++...|+.-+..+|+....... .+ +..|+
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 478999999 9999999999999988855566665433110 01 12222
Q ss_pred ----cHHHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCCCC
Q 030220 106 ----SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~iTtG~ 150 (181)
+..++++ ++|++|+++-.-.... +-+.|.+.+++.|.+-+.|+
T Consensus 117 ~~~~~~~~~~~--~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 117 LSSENALDILA--PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred cCHHhHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 1233444 6788888876554443 44566778888876644443
No 235
>PRK06953 short chain dehydrogenase; Provisional
Probab=95.16 E-value=0.13 Score=41.46 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=50.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|.+|+.+++.+.+.|.+++. ++..... ++++.. .+++ ...|+..++.+...++++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~-~~r~~~~-----------~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIA-TARDAAA-----------LAALQA-LGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEE-EECCHHH-----------HHHHHh-ccceEEEecCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988999764 3433211 111111 1122 45667777777776655433
Q ss_pred cCCCEEEEeCCCCC
Q 030220 138 AELDLVVCITEGIP 151 (181)
Q Consensus 138 ~GIk~IV~iTtG~~ 151 (181)
.++..++. +.|..
T Consensus 69 ~~~d~vi~-~ag~~ 81 (222)
T PRK06953 69 EALDAAVY-VAGVY 81 (222)
T ss_pred CCCCEEEE-CCCcc
Confidence 45788877 66653
No 236
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=95.14 E-value=0.075 Score=52.84 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=71.1
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh---------CCeEeeecCCCCCCeEEcCccc-------------cc--cHHHHhh
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY---------GTKMVGGVTPKKGGTEHLGLPV-------------FN--SVAEAKA 112 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~---------g~~IVagVdP~~~G~ei~GvPV-------------y~--sl~e~~~ 112 (181)
+..+|+++|+ |..|+..++.+.+. +++|++..|....--.-.|+.. ++ .+-|.+.
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVK 542 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHh
Confidence 5789999999 99999888876541 3556665443221000012211 11 2223333
Q ss_pred cc--CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHHhhhhchhc
Q 030220 113 ET--KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIP--QHDMVINFTRVNILLVAF 169 (181)
Q Consensus 113 ~~--~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~--~ed~~~l~~~ak~ipv~~ 169 (181)
.. ..||+|++++.....+...+++++|++.|-.-=..+. .++..+|.++|++-.+.+
T Consensus 543 ~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~ 603 (819)
T PRK09436 543 EYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKF 603 (819)
T ss_pred hcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeE
Confidence 22 3589999999988888889999999998755112222 267888998887765544
No 237
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.11 E-value=0.069 Score=49.19 Aligned_cols=88 Identities=20% Similarity=0.125 Sum_probs=65.1
Q ss_pred cCCceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCC----------eEE-----------------cCccccccH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG----------TEH-----------------LGLPVFNSV 107 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G----------~ei-----------------~GvPVy~sl 107 (181)
++..||-++|+ |.||+.++..... .|+++|+.-|.+..+ .+. .-+-|-++.
T Consensus 15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~ 93 (438)
T COG4091 15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDA 93 (438)
T ss_pred CCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecch
Confidence 44589999999 9999977777777 599999864433222 010 124555567
Q ss_pred HHHhhccCCcEEEEee-ChHHHHHHHHHHHHcCCCEEE
Q 030220 108 AEAKAETKANASVIYV-PPPFAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 108 ~e~~~~~~~DVaIdfV-Pp~~a~~~~~eaie~GIk~IV 144 (181)
+++...-.+|++|+.+ .|+...+...+|+++|.++|.
T Consensus 94 ~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVM 131 (438)
T COG4091 94 ELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVM 131 (438)
T ss_pred hhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEE
Confidence 7776655689999987 578888999999999999974
No 238
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.10 E-value=0.077 Score=47.95 Aligned_cols=106 Identities=16% Similarity=0.025 Sum_probs=68.1
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh----------CCeEeeecCCCCCCe-EEcCcc---ccccH-----HHHhhccCCc
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY----------GTKMVGGVTPKKGGT-EHLGLP---VFNSV-----AEAKAETKAN 117 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~----------g~~IVagVdP~~~G~-ei~GvP---Vy~sl-----~e~~~~~~~D 117 (181)
+..||.|+|+ |.-|+.+.+.+.+. ++++++..+....-. .+.+.+ ...+. .++....++|
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 4578999999 99999888866652 355666666433211 122232 22234 5666656789
Q ss_pred EEEEeeCh--HHHH--HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 118 ASVIYVPP--PFAA--AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 118 VaIdfVPp--~~a~--~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+.+..++. +.++ +...+++++|.+.|=.-=..+..+ -.+|.++|++
T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~-~~el~~~A~~ 130 (333)
T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALH-YHELREAAEK 130 (333)
T ss_pred EEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhh-HHHHHHHHHH
Confidence 88887776 3444 899999999998763312333333 6677777776
No 239
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.09 E-value=0.15 Score=42.59 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=28.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |-.|..+++.+...|+.-+..+|+..
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 468999999 99999999999998887555666554
No 240
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.04 E-value=0.24 Score=40.62 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=52.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++|+|.|++|..|+.+++.+.+.|.+++ .++..... . ..+.+... .+++ +..|...++.+.+++++..+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~-~~~r~~~~--~------~~~~~~~~-~~~~~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVI-ATGRRQER--L------QELKDELG-DNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE-EEECCHHH--H------HHHHHHhc-cceEEEEecCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999876 34433210 0 01111111 1232 34577778888888877766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..++. ..|+
T Consensus 71 ~~~~id~vi~-~ag~ 84 (248)
T PRK10538 71 EWRNIDVLVN-NAGL 84 (248)
T ss_pred HcCCCCEEEE-CCCc
Confidence 4 6888887 5554
No 241
>PRK08177 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.12 Score=41.83 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=50.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
.+|+|.|++|.+|+.+++.+.+.|.+|++ ++..... .. .+++. .... -..+|...++.+.++++++.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~-~~r~~~~--~~------~~~~~-~~~~-~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTA-TVRGPQQ--DT------ALQAL-PGVH-IEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEE-EeCCCcc--hH------HHHhc-cccc-eEEcCCCCHHHHHHHHHHhhcC
Confidence 46999999999999999999999998774 4433211 10 11111 1011 1234556677777777777666
Q ss_pred CCCEEEEeCCCC
Q 030220 139 ELDLVVCITEGI 150 (181)
Q Consensus 139 GIk~IV~iTtG~ 150 (181)
++..|+. ..|.
T Consensus 71 ~id~vi~-~ag~ 81 (225)
T PRK08177 71 RFDLLFV-NAGI 81 (225)
T ss_pred CCCEEEE-cCcc
Confidence 7888776 4444
No 242
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=95.00 E-value=0.15 Score=42.44 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=41.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhC--CeEeeecCCC---CCCeE---E---cCccc-------cccHHHHhhccCCcEEEE
Q 030220 60 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPK---KGGTE---H---LGLPV-------FNSVAEAKAETKANASVI 121 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g--~~IVagVdP~---~~G~e---i---~GvPV-------y~sl~e~~~~~~~DVaId 121 (181)
+|+|.|+||.+|+.+++.+.+.| .++++ ++.. ..... . .++.+ .+++.++++..++|++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~ 79 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIV-LDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVH 79 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEE-ecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEE
Confidence 58999999999999999988865 67774 3321 00000 0 01222 224666676556999998
Q ss_pred eeC
Q 030220 122 YVP 124 (181)
Q Consensus 122 fVP 124 (181)
+..
T Consensus 80 ~a~ 82 (317)
T TIGR01181 80 FAA 82 (317)
T ss_pred ccc
Confidence 874
No 243
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.99 E-value=0.078 Score=48.82 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=41.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEcCc-c---------------ccccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHLGL-P---------------VFNSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~Gv-P---------------Vy~sl~e~~~~~~~DVaI 120 (181)
.+||.|+|. |.||.-....+.+ ++++++ .+|+.+...-..|. | .+.+..+..+ ++|+.+
T Consensus 6 ~mkI~vIGl-GyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~--~advvi 81 (425)
T PRK15182 6 EVKIAIIGL-GYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIK--ECNFYI 81 (425)
T ss_pred CCeEEEECc-CcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHc--CCCEEE
Confidence 378999999 9999977777655 788774 34454432111222 2 2333334445 799999
Q ss_pred EeeChH
Q 030220 121 IYVPPP 126 (181)
Q Consensus 121 dfVPp~ 126 (181)
++||-.
T Consensus 82 i~Vptp 87 (425)
T PRK15182 82 ITVPTP 87 (425)
T ss_pred EEcCCC
Confidence 999954
No 244
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.96 E-value=0.21 Score=42.36 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=55.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCCe------------E---E-cCccccccHHHHhhccCCcEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGT------------E---H-LGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G~------------e---i-~GvPVy~sl~e~~~~~~~DVa 119 (181)
+.++|+|.|++|-.|+.+++.+.+.|.++++.+ ++..... . + .++.-...++++++ ++|++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 80 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD--GCEGV 80 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc--CCCEE
Confidence 346899999999999999999999999987643 3321100 0 0 11111123556666 68988
Q ss_pred EEeeCh--------H-H--------HHHHHHHHHHc-CCCEEEEeCC
Q 030220 120 VIYVPP--------P-F--------AAAAIMEAMEA-ELDLVVCITE 148 (181)
Q Consensus 120 IdfVPp--------~-~--------a~~~~~eaie~-GIk~IV~iTt 148 (181)
|-+..+ . . ...+++.|.+. +++.+|.+++
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS 127 (322)
T PLN02662 81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSS 127 (322)
T ss_pred EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 776532 1 1 22345556666 8887776554
No 245
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.95 E-value=0.21 Score=43.37 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=56.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---c----Ccc-cc------ccHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---L----GLP-VF------NSVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~----GvP-Vy------~sl~e~~~~~~~DVaIdf 122 (181)
+++|+|.|++|-.|+.+++.+.+.|.+|++. +..... ... . .+. +. .++.+++++.++|++|.+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~ 82 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGY-SLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL 82 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEE-eCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence 4689999999999999999999999998753 221111 000 0 111 11 135566665578988877
Q ss_pred eCh------------------HHHHHHHHHHHHcC-CCEEEEeCC
Q 030220 123 VPP------------------PFAAAAIMEAMEAE-LDLVVCITE 148 (181)
Q Consensus 123 VPp------------------~~a~~~~~eaie~G-Ik~IV~iTt 148 (181)
... .....+++.|.+.+ ++.+|.+++
T Consensus 83 A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 83 AAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 631 12345566666666 666666565
No 246
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.95 E-value=0.054 Score=48.71 Aligned_cols=84 Identities=8% Similarity=-0.152 Sum_probs=60.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEe---eecCC-CCCCeEE--cC--ccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV---GGVTP-KKGGTEH--LG--LPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IV---agVdP-~~~G~ei--~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
..+|+| |+||..|+...+.+.+++|.+- ..-.+ ...|+.+ .| ++|-.--++..+ ++|+++. .+.+...
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~--~vDia~f-ag~~~s~ 78 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEWA--DFNYVFF-AGKMAQA 78 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCcc--cCCEEEE-cCHHHHH
Confidence 467999 9999999999999999888622 11112 4444433 22 444432222334 7999999 9999999
Q ss_pred HHHHHHHHcCCCEEEE
Q 030220 130 AAIMEAMEAELDLVVC 145 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~ 145 (181)
+-+..+.++|...|=+
T Consensus 79 ~~ap~a~~aG~~VIDn 94 (322)
T PRK06901 79 EHLAQAAEAGCIVIDL 94 (322)
T ss_pred HHHHHHHHCCCEEEEC
Confidence 9999999999888755
No 247
>PRK06179 short chain dehydrogenase; Provisional
Probab=94.90 E-value=0.35 Score=40.00 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=51.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
+.+|+|.|++|.+|+.+++.+.+.|.++++. +..... ... .. ++ -+-.|...++...++++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~-~r~~~~--~~~----------~~--~~~~~~~D~~d~~~~~~~~~~~~ 68 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGT-SRNPAR--AAP----------IP--GVELLELDVTDDASVQAAVDEVI 68 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCChhh--ccc----------cC--CCeeEEeecCCHHHHHHHHHHHH
Confidence 3569999999999999999999999997743 332211 100 00 11 13456677888888888776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 69 ~~~g~~d~li~-~ag~ 83 (270)
T PRK06179 69 ARAGRIDVLVN-NAGV 83 (270)
T ss_pred HhCCCCCEEEE-CCCC
Confidence 54 4677777 6775
No 248
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=94.87 E-value=0.13 Score=51.23 Aligned_cols=108 Identities=13% Similarity=-0.025 Sum_probs=67.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHH--------hC--CeEeeecCCCCCCeEEcCcc------------cccc---HHHHh
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE--------YG--TKMVGGVTPKKGGTEHLGLP------------VFNS---VAEAK 111 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~--------~g--~~IVagVdP~~~G~ei~GvP------------Vy~s---l~e~~ 111 (181)
+..+|+++|+ |+.|+.+++.+.+ +| ++|++..|....--.-.|+. -..+ +-|.+
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~i 535 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLWL 535 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHHH
Confidence 5688999999 9999977776543 24 44676554332100011211 1112 22333
Q ss_pred hccCC--cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHhhhhc
Q 030220 112 AETKA--NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI---PQHDMVINFTRVNILL 166 (181)
Q Consensus 112 ~~~~~--DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~---~~ed~~~l~~~ak~ip 166 (181)
...++ +++|++++.+........|+++|++.|-. --.. +.+...+|.++|++=.
T Consensus 536 ~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVta-NK~~~a~~~~~~~~l~~~a~~~~ 594 (810)
T PRK09466 536 RAHPYDELVVLDVTASEQLALQYPDFASHGFHVISA-NKLAGSSPSNFYRQIKDAFAKTG 594 (810)
T ss_pred hhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcC-CcccccccHHHHHHHHHHHHHcC
Confidence 32333 59999999998888888999999998754 2221 4578888888887533
No 249
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.85 E-value=0.17 Score=46.09 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=62.6
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
-.++|-.+|.|+|+-| +|++.++.....|+++++ +|.... .-+|+++....|.-|+++-...-.+.+
T Consensus 177 ~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~v-is~~~~-----------kkeea~~~LGAd~fv~~~~d~d~~~~~ 243 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTV-ISTSSK-----------KKEEAIKSLGADVFVDSTEDPDIMKAI 243 (360)
T ss_pred cCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEE-EeCCch-----------hHHHHHHhcCcceeEEecCCHHHHHHH
Confidence 3556889999999966 999999999999999884 443321 124556656677777777555555566
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
..+.+-++..+.++ +++.++.+.++.
T Consensus 244 ~~~~dg~~~~v~~~----a~~~~~~~~~~l 269 (360)
T KOG0023|consen 244 MKTTDGGIDTVSNL----AEHALEPLLGLL 269 (360)
T ss_pred HHhhcCcceeeeec----cccchHHHHHHh
Confidence 66677777777774 444444444443
No 250
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=94.83 E-value=0.12 Score=47.57 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=65.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCCe------E-------Ec---------------C--ccccc-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGT------E-------HL---------------G--LPVFN- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G~------e-------i~---------------G--vPVy~- 105 (181)
.||+|.|.||..|+...+.+.++ .|++++...-..... + +. | ..|+.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G 81 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLVG 81 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEEC
Confidence 58999999999999888877763 688887422111110 0 10 1 23443
Q ss_pred --cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhchhhhhhhhc
Q 030220 106 --SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLNFIMKLTR 178 (181)
Q Consensus 106 --sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~~~~~~~~~~ 178 (181)
.+.++.+..++|+++..+.-.....-..+|+++|.+..+. =|+.-|+-|.++|++.+
T Consensus 82 ~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA----------------NKEsLV~aG~li~~~a~ 140 (389)
T TIGR00243 82 EEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALA----------------NKESLVTAGHLFLDAVK 140 (389)
T ss_pred HHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe----------------chhHHHhhHHHHHHHHH
Confidence 2344444345788888888888888888888888776544 25555666666665543
No 251
>PLN02206 UDP-glucuronate decarboxylase
Probab=94.82 E-value=0.28 Score=45.15 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=53.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC-CeEE------cCccc-ccc-HHHHhhccCCcEEEEeeC---
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEH------LGLPV-FNS-VAEAKAETKANASVIYVP--- 124 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~-G~ei------~GvPV-y~s-l~e~~~~~~~DVaIdfVP--- 124 (181)
+.+||+|.|+||-.|+.+++.+++.|.+|++..+.... ...+ .++.. ..+ +++.+. ++|++|-+.-
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~--~~D~ViHlAa~~~ 195 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILL--EVDQIYHLACPAS 195 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhc--CCCEEEEeeeecc
Confidence 55889999999999999999999999998864221100 0000 11111 112 333444 6888776652
Q ss_pred -------hH--------HHHHHHHHHHHcCCCEEEE
Q 030220 125 -------PP--------FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 125 -------p~--------~a~~~~~eaie~GIk~IV~ 145 (181)
|. ....+++.|.+.|++.|..
T Consensus 196 ~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~ 231 (442)
T PLN02206 196 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 231 (442)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 11 2356677788889876554
No 252
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=94.79 E-value=0.18 Score=45.27 Aligned_cols=85 Identities=14% Similarity=0.100 Sum_probs=52.9
Q ss_pred hhhHHHHHhCCeEeeecCCCCCC--------eEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHHHHHHcCC--C
Q 030220 73 FHTEQAIEYGTKMVGGVTPKKGG--------TEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEAMEAEL--D 141 (181)
Q Consensus 73 ~~~k~~~~~g~~IVagVdP~~~G--------~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~eaie~GI--k 141 (181)
.....+.+.|.+|. ..|++... -.-.|+.+..+..++.+ ++|++|+++|+.. +.++++.+.++-- .
T Consensus 34 ~MA~~La~aG~~V~-v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~--~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~ 110 (342)
T PRK12557 34 RMAIEFAEAGHDVV-LAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK--HGEIHILFTPFGKKTVEIAKNILPHLPENA 110 (342)
T ss_pred HHHHHHHhCCCeEE-EEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh--CCCEEEEECCCcHHHHHHHHHHHhhCCCCC
Confidence 55556666787755 44554320 01147777778888776 8999999999998 7777776554421 2
Q ss_pred EEEEeCCCCCHHHH-HHHHHH
Q 030220 142 LVVCITEGIPQHDM-VINFTR 161 (181)
Q Consensus 142 ~IV~iTtG~~~ed~-~~l~~~ 161 (181)
.|+. +..++.... ..+.+.
T Consensus 111 IVId-~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 111 VICN-TCTVSPVVLYYSLEGE 130 (342)
T ss_pred EEEE-ecCCCHHHHHHHHHHH
Confidence 3455 444455554 455444
No 253
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.79 E-value=0.056 Score=49.21 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=57.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEc-----------------Cccccc--cHHHHhhccCCcE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHL-----------------GLPVFN--SVAEAKAETKANA 118 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~-----------------GvPVy~--sl~e~~~~~~~DV 118 (181)
+||.|+|. |.||.-....+. .|+++++ .+|+.+...-.. +..... +.+++.+ ++|+
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~--~ad~ 76 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR--DADY 76 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc--CCCE
Confidence 37999999 999998875554 4888774 344443221001 111212 2455555 7999
Q ss_pred EEEeeChH-----------HHHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 119 SVIYVPPP-----------FAAAAIMEAMEAEL-DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 119 aIdfVPp~-----------~a~~~~~eaie~GI-k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++++||.. .+.++++...+..- +.||. .+=++..-..++.+...+
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~-~STv~pgtt~~l~~~~~~ 133 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVI-KSTVPVGFTAAMHKKYRT 133 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEE-eeecCCchHHHHHHHhhc
Confidence 99999954 44555554444211 23444 444555555566554443
No 254
>PLN02583 cinnamoyl-CoA reductase
Probab=94.78 E-value=0.25 Score=42.21 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC-----eEE----cCcccc-------ccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-----TEH----LGLPVF-------NSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G-----~ei----~GvPVy-------~sl~e~~~~~~~DVaI 120 (181)
..+|+|.|++|..|+.+++.+.+.|.++++.+. +.... .++ .++.++ .++.+++. ++|.++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~--~~d~v~ 83 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALK--GCSGLF 83 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHc--CCCEEE
Confidence 457999999999999999999999999886543 11100 000 112222 13455555 678765
Q ss_pred Eee-Ch---------------HHHHHHHHHHHHc-CCCEEEEeCC
Q 030220 121 IYV-PP---------------PFAAAAIMEAMEA-ELDLVVCITE 148 (181)
Q Consensus 121 dfV-Pp---------------~~a~~~~~eaie~-GIk~IV~iTt 148 (181)
-.. ++ ..+..+++.|.+. +++.||.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS 128 (297)
T PLN02583 84 CCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSS 128 (297)
T ss_pred EeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Confidence 332 11 2455567777776 6888776554
No 255
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.75 E-value=0.16 Score=46.11 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=29.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
++.+|+|+|+ |-.|..+++.+...|+.-+..+|+..
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 4578999999 99999999999998887555666554
No 256
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=94.75 E-value=0.17 Score=45.61 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=63.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe--------------E--EcCccccccHHHHhhccCCcEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT--------------E--HLGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~--------------e--i~GvPVy~sl~e~~~~~~~DVa 119 (181)
..++|+|-|++|-.|+-+++.+++.|++|.|-|. |+.... + ..++--|++++++++ +||.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~--gcdgV 82 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID--GCDGV 82 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh--CCCEE
Confidence 4678999999999999999999999999998654 443110 0 135666778888888 78876
Q ss_pred EEeeCh-----------------HHHHHHHHHHHHcC-CCEEEEeC
Q 030220 120 VIYVPP-----------------PFAAAAIMEAMEAE-LDLVVCIT 147 (181)
Q Consensus 120 IdfVPp-----------------~~a~~~~~eaie~G-Ik~IV~iT 147 (181)
+=+-.| +.+..+++-|.+.. |+.||. |
T Consensus 83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~-T 127 (327)
T KOG1502|consen 83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY-T 127 (327)
T ss_pred EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE-e
Confidence 533222 23455667777777 888886 5
No 257
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.75 E-value=0.049 Score=47.58 Aligned_cols=86 Identities=14% Similarity=0.287 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-E--EcCccc--cccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-e--i~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
..+|+|+|+ |++|+.+.+.+...|.++. .+|+..... . -.|... +.++++..+ ++|+++.++|........
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~~V~-v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDiVint~P~~ii~~~~ 226 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGARVF-VGARSSADLARITEMGLIPFPLNKLEEKVA--EIDIVINTIPALVLTADV 226 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHCCCeeecHHHHHHHhc--cCCEEEECCChHHhCHHH
Confidence 368999999 9999999999999999865 444432110 0 013332 235677776 799999999877544332
Q ss_pred HHHHHcCCCEEEEeCC
Q 030220 133 MEAMEAELDLVVCITE 148 (181)
Q Consensus 133 ~eaie~GIk~IV~iTt 148 (181)
...+..+ ..++.++.
T Consensus 227 l~~~k~~-aliIDlas 241 (287)
T TIGR02853 227 LSKLPKH-AVIIDLAS 241 (287)
T ss_pred HhcCCCC-eEEEEeCc
Confidence 2233332 34555443
No 258
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.73 E-value=0.51 Score=37.73 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
+.+++|.|++|.+|+.+++.+.+.|.+++.... +.. . . -.+.+.+.+ ...++. +-.|...++...++++++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~-~--~--~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGANVVINYASSEA-G--A--EALVAEIGA--LGGKALAVQGDVSDAESVERAVDEA 77 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchh-H--H--HHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 357999999999999999999999999754432 221 1 0 011111111 111222 223778888888888877
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..|+. ..|.
T Consensus 78 ~~~~~~id~vi~-~ag~ 93 (248)
T PRK05557 78 KAEFGGVDILVN-NAGI 93 (248)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 663 6888887 5554
No 259
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.71 E-value=0.14 Score=41.50 Aligned_cols=83 Identities=12% Similarity=-0.020 Sum_probs=50.4
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--------------------------E-cCccc--cc-----
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------H-LGLPV--FN----- 105 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--------------------------i-~GvPV--y~----- 105 (181)
||+|+|+ |-+|..+++.+...|+.-+..+|+.....+ + ..+.+ ++
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 5899999 999999999998888863334554431100 0 01111 11
Q ss_pred -cHHHHhhccCCcEEEEeeChHHHHH-HHHHHHHc-CCCEEEE
Q 030220 106 -SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEA-ELDLVVC 145 (181)
Q Consensus 106 -sl~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~-GIk~IV~ 145 (181)
+++++++ ++|++|+++-...+.. ..+++.++ +++.|.+
T Consensus 80 ~~~~~~l~--~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 80 NNLEGLFG--DCDIVVEAFDNAETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred hhHHHHhc--CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 2334444 6777777765555543 55666666 7777765
No 260
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.68 E-value=0.14 Score=42.73 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=52.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---------------------------cCcc--ccc---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---------------------------LGLP--VFN--- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---------------------------~GvP--Vy~--- 105 (181)
..+|+|+|+ |-+|..+++.+...|..-+..+|+.....+. .++. .++
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 467999999 9999999999988887744455554221000 0111 111
Q ss_pred ---cHHHHhhccCCcEEEEeeChHHH-HHHHHHHHHc-CCCEEEE
Q 030220 106 ---SVAEAKAETKANASVIYVPPPFA-AAAIMEAMEA-ELDLVVC 145 (181)
Q Consensus 106 ---sl~e~~~~~~~DVaIdfVPp~~a-~~~~~eaie~-GIk~IV~ 145 (181)
+++++.+ ++|++|+++-.... +...+.|.++ +++.|.+
T Consensus 107 ~~~~~~~~~~--~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 107 DEDNIEELFK--DCDIVVEAFDNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred CHHHHHHHHc--CCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 1234444 67888877544444 4456677777 7777765
No 261
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.66 E-value=0.13 Score=48.18 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=59.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--cCcccc----------------c--------cHHHHh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LGLPVF----------------N--------SVAEAK 111 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--~GvPVy----------------~--------sl~e~~ 111 (181)
..+|+|+|+ |+.|+..++.+.+.|.+||+..|.. |.-+ .|+.+- + +.+++.
T Consensus 232 g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsDs~--G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~ 308 (445)
T PRK09414 232 GKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSDSS--GYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW 308 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCC--ceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc
Confidence 478999999 9999999999999999999864521 1000 122211 1 222222
Q ss_pred hccCCcEEEEeeChHHH-HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 112 AETKANASVIYVPPPFA-AAAIMEAMEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 112 ~~~~~DVaIdfVPp~~a-~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
+.+|||.|-+...... .+++...++.+.+.|+.-+-|-...+..++.
T Consensus 309 -~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L 356 (445)
T PRK09414 309 -SVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF 356 (445)
T ss_pred -ccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH
Confidence 3478988877654433 3445555566899999844443333333333
No 262
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.62 E-value=0.48 Score=37.75 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=52.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|..|+.+++.+.+.|.+++ .++.+... .. +.+++... ..++ +..|....+...++++++.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~-~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVA-LIGRGAAP--LS-----QTLPGVPA-DALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEE-EEeCChHh--HH-----HHHHHHhh-cCceEEEeecCCHHHHHHHHHHHH
Confidence 35699999999999999999999899866 44433211 00 01111111 1122 3466677777777777776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..|+. ..|.
T Consensus 78 ~~~~~~d~vi~-~ag~ 92 (239)
T PRK12828 78 RQFGRLDALVN-IAGA 92 (239)
T ss_pred HHhCCcCEEEE-CCcc
Confidence 54 6788877 5443
No 263
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.58 Score=38.40 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC-CcEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK-ANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~-~DVaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.+++. ++.+.. .+++..++.+ .-+..|...++.+.+.++++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~-~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVV-GDIDPE-----------AGKAAADEVGGLFVPTDVTDEDAVNALFDTAA 74 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEE-EeCCHH-----------HHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHH
Confidence 367999999999999999999999998764 332211 1111111111 124557788888888888876
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..++. ..|+
T Consensus 75 ~~~~~id~vi~-~ag~ 89 (255)
T PRK06057 75 ETYGSVDIAFN-NAGI 89 (255)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 54 6788887 5554
No 264
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.23 Score=41.37 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|-+|+.+++.+.+.|.+|++ ++.+.. .++++.. .+++ +..|...++.+.++++++.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~-~~r~~~-----------~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWA-TARKAE-----------DVEALAA-AGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHH-CCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999774 343221 1222221 1333 44788888999999888876
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|. ..|+
T Consensus 69 ~~~~id~vi~-~ag~ 82 (274)
T PRK05693 69 EHGGLDVLIN-NAGY 82 (274)
T ss_pred hcCCCCEEEE-CCCC
Confidence 4 5788888 6664
No 265
>PLN02494 adenosylhomocysteinase
Probab=94.56 E-value=0.052 Score=51.18 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=64.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
..+|+|+|+ |+.|+.+++.+...|.+|+. .+||.+... ...|+.+. +++++++ +.|+++.++....+.. .+.
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~--~ADVVI~tTGt~~vI~--~e~ 327 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVS--EADIFVTTTGNKDIIM--VDH 327 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHh--hCCEEEECCCCccchH--HHH
Confidence 467999999 99999999999989999664 456653211 12456554 6788877 7899998776554321 223
Q ss_pred HHc-CCCEEEEeCCCC-CHHHHHHHHHHh
Q 030220 136 MEA-ELDLVVCITEGI-PQHDMVINFTRV 162 (181)
Q Consensus 136 ie~-GIk~IV~iTtG~-~~ed~~~l~~~a 162 (181)
++. +-..+++.+.++ ++=|...|.+++
T Consensus 328 L~~MK~GAiLiNvGr~~~eID~~aL~~~~ 356 (477)
T PLN02494 328 MRKMKNNAIVCNIGHFDNEIDMLGLETYP 356 (477)
T ss_pred HhcCCCCCEEEEcCCCCCccCHHHHhhcc
Confidence 322 333344435554 577788888773
No 266
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.56 E-value=0.11 Score=43.84 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=57.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCe---EEcCccccc---c----HHHH-hhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGT---EHLGLPVFN---S----VAEA-KAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~---ei~GvPVy~---s----l~e~-~~~~~~DVaIdfVPp~ 126 (181)
++++|+|+ |++|..+++.+.+.|.+++.. .|+....+ +-.+..++. + |+++ ++ ++|+.|..+..+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~--~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID--DADAVVAATGND 77 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC--cCCEEEEeeCCC
Confidence 47999999 999999999999999998853 33333221 112333332 2 4444 22 799999999985
Q ss_pred HHHHH-HHHHHH-cCCCEEEEeC
Q 030220 127 FAAAA-IMEAME-AELDLVVCIT 147 (181)
Q Consensus 127 ~a~~~-~~eaie-~GIk~IV~iT 147 (181)
...-+ +..+.+ .|++.+|.-+
T Consensus 78 ~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEe
Confidence 55444 444545 5999998833
No 267
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=94.54 E-value=0.25 Score=42.74 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=41.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC-C-------------eEE--cCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-G-------------TEH--LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~-G-------------~ei--~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
++|+|.|+||-.|+.+++.+.+.|.+++..++.... + .++ .++.-..++++++++.++|++|-+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 81 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHL 81 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEEC
Confidence 589999999999999999999988775544442210 0 000 112222246666665568988877
Q ss_pred e
Q 030220 123 V 123 (181)
Q Consensus 123 V 123 (181)
.
T Consensus 82 A 82 (355)
T PRK10217 82 A 82 (355)
T ss_pred C
Confidence 5
No 268
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.54 E-value=0.055 Score=48.95 Aligned_cols=87 Identities=22% Similarity=0.177 Sum_probs=57.6
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCC--eEEcCcccccc-----HHHHhhccCCcEEEEeeC
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGG--TEHLGLPVFNS-----VAEAKAETKANASVIYVP 124 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G--~ei~GvPVy~s-----l~e~~~~~~~DVaIdfVP 124 (181)
..+.|-.+|+|+|+ |-+|+..++.....|.++++. .++++.. +++..--++++ ++++.+ .+|++|++++
T Consensus 162 ~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~--~~d~ii~tv~ 238 (339)
T COG1064 162 ANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKE--IADAIIDTVG 238 (339)
T ss_pred cCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHh--hCcEEEECCC
Confidence 45778899999999 899999999999889998863 4454421 12222223331 233322 3999999999
Q ss_pred hHHHHHHHHHHHHcCCCEE
Q 030220 125 PPFAAAAIMEAMEAELDLV 143 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~I 143 (181)
....+....++..|=+.+
T Consensus 239 -~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 239 -PATLEPSLKALRRGGTLV 256 (339)
T ss_pred -hhhHHHHHHHHhcCCEEE
Confidence 666666666666644443
No 269
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.53 E-value=0.22 Score=43.33 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=28.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
.++|+|.|++|-.|+.+++.+.+.|.+|++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~ 40 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHAT 40 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 5689999999999999999999999998864
No 270
>PLN02572 UDP-sulfoquinovose synthase
Probab=94.52 E-value=0.35 Score=44.35 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=27.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG 87 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa 87 (181)
+++|+|.|++|-.|+.+++.+.+.|.+|++
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~ 76 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRGYEVAI 76 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 367999999999999999999999999775
No 271
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.52 E-value=0.13 Score=46.00 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=29.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |.+|+.+++.+...|..-+..||+..
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 467999999 99999999999998886555677654
No 272
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.50 E-value=0.5 Score=39.55 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~e 134 (181)
.++|+|.|++|.+|+.+++.+.+.|.++++. +.... .++++.+.. ++ -+..|...++.+.+.++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~-~r~~~-----------~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~ 71 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGT-VRSEA-----------ARADFEALHPDRALARLLDVTDFDAIDAVVAD 71 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEE-eCCHH-----------HHHHHHhhcCCCeeEEEccCCCHHHHHHHHHH
Confidence 3569999999999999999999999997753 33221 112211111 12 234577788888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 72 ~~~~~~~~d~vv~-~ag~ 88 (277)
T PRK06180 72 AEATFGPIDVLVN-NAGY 88 (277)
T ss_pred HHHHhCCCCEEEE-CCCc
Confidence 7764 5788887 6565
No 273
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.50 E-value=0.39 Score=40.26 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.+|+|.|++|.+|+.+++.+.+.|.+|+. ++.+.. .++++.+ .+++ +..|...++.+.++++++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~-~~r~~~-----------~~~~l~~-~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFA-TCRKEE-----------DVAALEA-EGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EECCHH-----------HHHHHHH-CCceEEEccCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999774 333221 1122221 1333 3467788888888888886
Q ss_pred Hc---CCCEEEEeCCCC
Q 030220 137 EA---ELDLVVCITEGI 150 (181)
Q Consensus 137 e~---GIk~IV~iTtG~ 150 (181)
+. .+..+|+ ..|+
T Consensus 71 ~~~~g~id~li~-~Ag~ 86 (277)
T PRK05993 71 ELSGGRLDALFN-NGAY 86 (277)
T ss_pred HHcCCCccEEEE-CCCc
Confidence 53 5778887 5553
No 274
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.49 E-value=0.079 Score=48.97 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=54.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH-H
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI-M 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~-~ 133 (181)
+..+|+|+|+ |.+|+.+++.+...|.+++. .+||.+... .-.|..+. +++++.+ .+|++|+++....+.+.. .
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~--~aDVVI~atG~~~~i~~~~l 276 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVK--EGDIFVTTTGNKDIITGEHF 276 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHc--CCCEEEECCCCHHHHHHHHH
Confidence 3568999999 99999999999999998554 456554221 11455444 3566665 789999999766554433 4
Q ss_pred HHHHcCC
Q 030220 134 EAMEAEL 140 (181)
Q Consensus 134 eaie~GI 140 (181)
++++.|-
T Consensus 277 ~~mk~Gg 283 (413)
T cd00401 277 EQMKDGA 283 (413)
T ss_pred hcCCCCc
Confidence 4555544
No 275
>PLN02306 hydroxypyruvate reductase
Probab=94.49 E-value=0.14 Score=46.76 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=60.7
Q ss_pred CceEEEEccCCCCcchhhHHHH-HhCCeEeeecCCCCCCe-E----EcC------------ccccccHHHHhhccCCcEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT-E----HLG------------LPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~-~~g~~IVagVdP~~~G~-e----i~G------------vPVy~sl~e~~~~~~~DVa 119 (181)
..+|.|+|+ |+.|+.+++.+. ..|++|+ ++||..... + ..| +..+.+++|+++ +.|++
T Consensus 165 gktvGIiG~-G~IG~~vA~~l~~~fGm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~--~sDiV 240 (386)
T PLN02306 165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR--EADVI 240 (386)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh--hCCEE
Confidence 357999999 999999999985 6899987 566543210 0 011 122358999998 79999
Q ss_pred EEeeChH-HHHHHHHHHH-Hc-CC-CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 120 VIYVPPP-FAAAAIMEAM-EA-EL-DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 120 IdfVPp~-~a~~~~~eai-e~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++.+|-. .....+.+.. +. +- ..+|+++=|=-+ |...|.++.+.
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lV-De~AL~~AL~s 288 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVI-DEVALVEHLKA 288 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCcccc-CHHHHHHHHHh
Confidence 9988843 2222332222 11 22 235664444333 44455555433
No 276
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.45 E-value=0.17 Score=45.82 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=56.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC------e------E---------------E-cC--ccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG------T------E---------------H-LG--LPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G------~------e---------------i-~G--vPVy~-- 105 (181)
+.+|+|+|+ |-.|..+++.+...|+.-+..+|+.... + + + .+ +..++
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence 467999999 9999999999999887644455544221 0 0 0 11 22222
Q ss_pred ----cHHHHhhccCCcEEEEeeChHHHHHH-HHHHHHcCCCEEEEeC
Q 030220 106 ----SVAEAKAETKANASVIYVPPPFAAAA-IMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp~~a~~~-~~eaie~GIk~IV~iT 147 (181)
++.++++ ++|++|+++-.-.+... -+.|.+.|++.|.+..
T Consensus 120 i~~~~~~~~~~--~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 120 LTAENAVELLN--GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred cCHHHHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 2344555 68999988876655544 4557788888886643
No 277
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.41 E-value=0.1 Score=50.20 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=71.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe------------------EEcCccccccHHHHhhccCCcEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT------------------EHLGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~------------------ei~GvPVy~sl~e~~~~~~~DVa 119 (181)
.++|+|-|++|..|+..++.+.+++.+-+-.++.+...+ .+.++.=++.+++++++++||++
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~V 329 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIV 329 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceE
Confidence 467999999999999999999998777332333222111 11233334468888888889987
Q ss_pred EEee-----------ChH-------HHHHHHHHHHHcCCCEEEEeCC----------CCCHHHHHHHHHHh
Q 030220 120 VIYV-----------PPP-------FAAAAIMEAMEAELDLVVCITE----------GIPQHDMVINFTRV 162 (181)
Q Consensus 120 IdfV-----------Pp~-------~a~~~~~eaie~GIk~IV~iTt----------G~~~ed~~~l~~~a 162 (181)
.=.- |-+ .+..+++.|+++|++.+|+++| |.+..-.+++..++
T Consensus 330 fHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaTKr~aE~~~~a~ 400 (588)
T COG1086 330 FHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGATKRLAEKLFQAA 400 (588)
T ss_pred EEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHHHHHHHHHHHHH
Confidence 6432 222 2456789999999999999886 55555555555555
No 278
>PRK12320 hypothetical protein; Provisional
Probab=94.38 E-value=0.12 Score=50.69 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=56.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccc-c-----cHHHHhhccCCcEEEEeeChH------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-N-----SVAEAKAETKANASVIYVPPP------ 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy-~-----sl~e~~~~~~~DVaIdfVPp~------ 126 (181)
+||+|.|++|..|+.+++.+.+.|.+|++..+..... ...++..+ . .+.+++. ++|+++-+.+..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~-~~~~ve~v~~Dl~d~~l~~al~--~~D~VIHLAa~~~~~~~~ 77 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA-LDPRVDYVCASLRNPVLQELAG--EADAVIHLAPVDTSAPGG 77 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc-ccCCceEEEccCCCHHHHHHhc--CCCEEEEcCccCccchhh
Confidence 3799999999999999999999999988754311100 00112111 1 2444444 789999988632
Q ss_pred ----HHHHHHHHHHHcCCCEEEEeCCC
Q 030220 127 ----FAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 127 ----~a~~~~~eaie~GIk~IV~iTtG 149 (181)
.+..+++.|.++|++.|.. ++.
T Consensus 78 vNv~Gt~nLleAA~~~GvRiV~~-SS~ 103 (699)
T PRK12320 78 VGITGLAHVANAAARAGARLLFV-SQA 103 (699)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEE-ECC
Confidence 2556778888899975543 543
No 279
>PRK05865 hypothetical protein; Provisional
Probab=94.37 E-value=0.22 Score=49.99 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=60.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC----CeEE--cCccccccHHHHhhccCCcEEEEeeCh-------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----GTEH--LGLPVFNSVAEAKAETKANASVIYVPP------- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~----G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp------- 125 (181)
+||+|.|++|.+|+.+++.+.+.|.++++....... +-+. .++.=..+++++++ ++|++|.+...
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~--~vD~VVHlAa~~~~~~~v 78 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMT--GADVVAHCAWVRGRNDHI 78 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHh--CCCEEEECCCcccchHHH
Confidence 379999999999999999999999998865432110 0000 11111224555555 79999988643
Q ss_pred --HHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 126 --PFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 126 --~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
.....+++.|.++|++.+|.+++.-
T Consensus 79 Nv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 79 NIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 2355667778888998888767653
No 280
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.36 E-value=0.69 Score=37.97 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|++|-.|+.+++.+.+.|.+++....... ...+++.+. ++ -+..|...++.+.++++++.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~-----------~~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE-----------NEAKELREK-GVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH-----------HHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHH
Confidence 367999999999999999999999999774322111 011222111 22 24567788889999888887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..++. ..|+
T Consensus 75 ~~~~~id~li~-~ag~ 89 (255)
T PRK06463 75 KEFGRVDVLVN-NAGI 89 (255)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 65 5777776 5554
No 281
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=94.34 E-value=0.12 Score=48.26 Aligned_cols=87 Identities=14% Similarity=0.020 Sum_probs=62.9
Q ss_pred ceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCCCCe----------------E----------EcC--ccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGGT----------------E----------HLG--LPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~~G~----------------e----------i~G--vPVy~-- 105 (181)
.||.|-|+ |+.|+.+.+.+.+ .+++||+..|+..... + +.| +.|+.
T Consensus 76 ikVgINGF-GRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~ 154 (442)
T PLN02237 76 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNR 154 (442)
T ss_pred EEEEEECC-ChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcC
Confidence 79999999 9999999998664 3699998544321110 0 112 34443
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
+.+++. .+.++|+++.++......+.+...+++|.+.|++ |
T Consensus 155 dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~i-S 196 (442)
T PLN02237 155 DPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII-T 196 (442)
T ss_pred CchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEE-C
Confidence 233442 2358999999999999999999999999999988 6
No 282
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.32 E-value=0.49 Score=39.27 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=52.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-CCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+++|.|++|.+|+.+++.+.+.|.+++.. +.+.. .++++.++. ++. +..|...++...+.++.+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~-~r~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIG-DLDEA-----------LAKETAAELGLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEE-ECCHH-----------HHHHHHHHhccceEEEccCCCHHHHHHHHHHHH
Confidence 469999999999999999999999986642 32210 111111110 122 3457788888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 74 ~~~~~id~li~-~ag~ 88 (273)
T PRK07825 74 ADLGPIDVLVN-NAGV 88 (273)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 64 6777777 6665
No 283
>PRK07577 short chain dehydrogenase; Provisional
Probab=94.32 E-value=0.74 Score=36.92 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=51.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
.++|+|.|++|.+|+.+++.+.+.|.+++. ++..... . .+ . + =+..|...++.+.+.++++.+
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~-~~r~~~~-~---~~---------~--~-~~~~D~~~~~~~~~~~~~~~~ 65 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVIG-IARSAID-D---FP---------G--E-LFACDLADIEQTAATLAQINE 65 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEE-EeCCccc-c---cC---------c--e-EEEeeCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999998774 3332211 0 11 0 1 134677778888888887776
Q ss_pred c-CCCEEEEeCCCC
Q 030220 138 A-ELDLVVCITEGI 150 (181)
Q Consensus 138 ~-GIk~IV~iTtG~ 150 (181)
. ++..++. ..|.
T Consensus 66 ~~~~d~vi~-~ag~ 78 (234)
T PRK07577 66 IHPVDAIVN-NVGI 78 (234)
T ss_pred hCCCcEEEE-CCCC
Confidence 5 5777776 5554
No 284
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.29 E-value=0.064 Score=51.29 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccc-c--HHHHhhc---cCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFN-S--VAEAKAE---TKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~-s--l~e~~~~---~~~DVaIdfVPp~~a~ 129 (181)
+.+|+|+|+ |++|+.+.+.+.+.|.+++. ..||+.... .-.|.++|. | =.+++++ .++|+.|.+++.+...
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT 478 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence 456999999 99999999999998888664 355554220 114677665 2 2333332 3789999999987666
Q ss_pred -HHHHHHHHcC
Q 030220 130 -AAIMEAMEAE 139 (181)
Q Consensus 130 -~~~~eaie~G 139 (181)
.++..+-+..
T Consensus 479 ~~i~~~~r~~~ 489 (601)
T PRK03659 479 MKIVELCQQHF 489 (601)
T ss_pred HHHHHHHHHHC
Confidence 4445555544
No 285
>PRK09186 flagellin modification protein A; Provisional
Probab=94.28 E-value=0.38 Score=39.16 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE-EEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA-SVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV-aIdfVPp~~a~~~~~eai 136 (181)
.++|+|.|++|.+|+.+++.+.+.|.+++.. +..... .. .+..++.+......+++ ..|...++.+.++++.+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~-~r~~~~--~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAA-DIDKEA--LN--ELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSA 78 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEE-ecChHH--HH--HHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHH
Confidence 4679999999999999999999999997743 332211 10 01111111111112333 557888888888888776
Q ss_pred Hc--CCCEEEEeC
Q 030220 137 EA--ELDLVVCIT 147 (181)
Q Consensus 137 e~--GIk~IV~iT 147 (181)
+. ++..+|+.+
T Consensus 79 ~~~~~id~vi~~A 91 (256)
T PRK09186 79 EKYGKIDGAVNCA 91 (256)
T ss_pred HHcCCccEEEECC
Confidence 53 477777743
No 286
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.33 Score=39.94 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|.+|+.+++.+.+.|.+++. ++++... ...+.+.....++ -+.+|....+.+.+.++.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~-~~r~~~~--------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGA-YDINEAG--------LAALAAELGAGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEE-EeCCHHH--------HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56999999999999999999998988763 4433211 0011111111122 235677888888888888765
Q ss_pred c---CCCEEEEeCCCC
Q 030220 138 A---ELDLVVCITEGI 150 (181)
Q Consensus 138 ~---GIk~IV~iTtG~ 150 (181)
. .+..+|. ..|.
T Consensus 73 ~~~~~id~vi~-~ag~ 87 (260)
T PRK08267 73 ATGGRLDVLFN-NAGI 87 (260)
T ss_pred HcCCCCCEEEE-CCCC
Confidence 3 6788887 5554
No 287
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.24 E-value=0.087 Score=47.37 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=56.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCC--CCCCe--EEcCccccc-------cHHHH-hhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP--KKGGT--EHLGLPVFN-------SVAEA-KAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP--~~~G~--ei~GvPVy~-------sl~e~-~~~~~~DVaIdfVPp~ 126 (181)
++|+|+|+ |++|+.+++.+.+.|.+++ .+++ ..... +..|++++. .++++ ++ ++|.+|.+++..
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~-vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~--~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVT-VIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAE--DADLLIAVTDSD 76 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCC--cCCEEEEecCCh
Confidence 47999999 9999999999998898877 4443 32110 112444442 13333 22 799999999876
Q ss_pred HHHHH-HHHHHHc-CCCEEEEeCCC
Q 030220 127 FAAAA-IMEAMEA-ELDLVVCITEG 149 (181)
Q Consensus 127 ~a~~~-~~eaie~-GIk~IV~iTtG 149 (181)
..... +..+-+. +.+.+++-+..
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 66554 3444554 77777775544
No 288
>PLN02700 homoserine dehydrogenase family protein
Probab=94.23 E-value=0.13 Score=47.07 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=27.9
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 115 KANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 115 ~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
..+|.||++|.....+....++++|++.|-+
T Consensus 109 ~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTa 139 (377)
T PLN02700 109 TGLVVVDCSASMETIGALNEAVDLGCCIVLA 139 (377)
T ss_pred CCCEEEECCCChHHHHHHHHHHHCCCeEEcC
Confidence 4699999999999999999999999998844
No 289
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.23 E-value=0.21 Score=44.11 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=62.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccc-----------ccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-----------NSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy-----------~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+.+|+|+|+ |-+|.++++++...|..-+..+|+.....+-.+--.| ....+.+++.++++-|......
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 478999999 9999999999999999877677877644221111111 1123334455677776666543
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
... +.+ .+...||+ |+. +.+...++.++|++-.+.
T Consensus 98 ~~~----~~l-~~fdvVV~-~~~-~~~~~~~in~~c~~~~ip 132 (286)
T cd01491 98 LTT----DEL-LKFQVVVL-TDA-SLEDQLKINEFCHSPGIK 132 (286)
T ss_pred CCH----HHH-hcCCEEEE-ecC-CHHHHHHHHHHHHHcCCE
Confidence 211 122 34455555 443 677777777777664443
No 290
>PRK06398 aldose dehydrogenase; Validated
Probab=94.21 E-value=0.54 Score=39.02 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=51.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|.+|+.+++.+.+.|.+++. ++..... .. ++ -+..|...++.+.++++++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~Vi~-~~r~~~~--~~---------------~~~~~~~D~~~~~~i~~~~~~~~~ 68 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGSNVIN-FDIKEPS--YN---------------DVDYFKVDVSNKEQVIKGIDYVIS 68 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEE-EeCCccc--cC---------------ceEEEEccCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999774 3332211 00 11 234566778888888888776
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 69 ~~~~id~li~-~Ag~ 82 (258)
T PRK06398 69 KYGRIDILVN-NAGI 82 (258)
T ss_pred HcCCCCEEEE-CCCC
Confidence 5 5788887 5554
No 291
>PRK12746 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.48 Score=38.63 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=52.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+++|.|++|-+|+..++.+.+.|.+++..+.+.... . -...++.... .++. +-.|...++...+.+++..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~ 79 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQA--A-----DETIREIESNGGKAFLIEADLNSIDGVKKLVEQLK 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH--H-----HHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHH
Confidence 5799999999999999999999999887544443211 1 0111222110 0121 3356677777777777766
Q ss_pred Hc--------CCCEEEEeCCCC
Q 030220 137 EA--------ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--------GIk~IV~iTtG~ 150 (181)
+. ++..+++ ..|.
T Consensus 80 ~~~~~~~~~~~id~vi~-~ag~ 100 (254)
T PRK12746 80 NELQIRVGTSEIDILVN-NAGI 100 (254)
T ss_pred HHhccccCCCCccEEEE-CCCC
Confidence 52 5888887 5554
No 292
>PLN02778 3,5-epimerase/4-reductase
Probab=94.17 E-value=0.26 Score=42.54 Aligned_cols=79 Identities=15% Similarity=0.012 Sum_probs=51.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeC-------------
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP------------- 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVP------------- 124 (181)
.+||+|.|++|-.|+.+++.+.+.|.+++.. ... +.. ...+...++..++|++|-+.-
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~-~~~-----~~~---~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~ 79 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG-SGR-----LEN---RASLEADIDAVKPTHVFNAAGVTGRPNVDWCESH 79 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEe-cCc-----cCC---HHHHHHHHHhcCCCEEEECCcccCCCCchhhhhC
Confidence 4789999999999999999999989887632 111 111 112444444447888773321
Q ss_pred --------hHHHHHHHHHHHHcCCCEEEE
Q 030220 125 --------PPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 125 --------p~~a~~~~~eaie~GIk~IV~ 145 (181)
-.....+++.|.++|++.++.
T Consensus 80 p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 80 KVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 113455777888889997665
No 293
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.2 Score=44.10 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
...|+|.|++|-+|+.+++.+.+.|.+++. ++.+... .. .+ .+++ ++...+ +..|...++.+.+++++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl-~~R~~~~--l~--~~---~~~~-~~~g~~~~~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVL-AARDEEA--LQ--AV---AEEC-RALGAEVLVVPTDVTDADQVKALATQ 77 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HH---HHHH-HhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 356899999999999999999999999773 4433211 10 11 1222 112233 34688889999999998
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 78 ~~~~~g~iD~lVn-nAG~ 94 (330)
T PRK06139 78 AASFGGRIDVWVN-NVGV 94 (330)
T ss_pred HHHhcCCCCEEEE-CCCc
Confidence 8775 5788887 6664
No 294
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=94.17 E-value=0.17 Score=42.86 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=51.7
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccc--cHHHHhhc-------cCCcEEEEee----C
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFN--SVAEAKAE-------TKANASVIYV----P 124 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~--sl~e~~~~-------~~~DVaIdfV----P 124 (181)
|+|.|++|-.|+.+++.+.+.|.++++.++....+.. ...+.+-+ +.+++.++ .++|++|-+. +
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~~~~~ 81 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGACSST 81 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHHHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECceecCC
Confidence 7899999999999999999989887777664322211 11111111 22222221 1689888753 1
Q ss_pred ------------hHHHHHHHHHHHHcCCCEEEE
Q 030220 125 ------------PPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 125 ------------p~~a~~~~~eaie~GIk~IV~ 145 (181)
-..+..+++.|.++|++.|..
T Consensus 82 ~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~ 114 (308)
T PRK11150 82 TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYA 114 (308)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 112445778888899975444
No 295
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.16 E-value=0.21 Score=44.87 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=28.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |-+|..+.+.+...|+.-+..+|+..
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478999999 99999999999998887555566544
No 296
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.16 E-value=0.073 Score=51.18 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=62.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccc-c--HHHHhhc---cCCcEEEEeeChHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFN-S--VAEAKAE---TKANASVIYVPPPF-A 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~-s--l~e~~~~---~~~DVaIdfVPp~~-a 128 (181)
..+|+|+|+ |+.|+.+.+.+.+.|.+++. .-||..... .-.|.+||. | =.+++++ .++|+.|.+++.+. .
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 467999999 99999999999998888664 355554220 114777776 2 2223322 27899999988754 4
Q ss_pred HHHHHHHHHcCCCE-EEEeCCCCCHHHHHHHHHH
Q 030220 129 AAAIMEAMEAELDL-VVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 129 ~~~~~eaie~GIk~-IV~iTtG~~~ed~~~l~~~ 161 (181)
..++..+-+...+. |++-+ -+.++..+++++
T Consensus 479 ~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~ 510 (621)
T PRK03562 479 LQLVELVKEHFPHLQIIARA--RDVDHYIRLRQA 510 (621)
T ss_pred HHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHC
Confidence 45555555554332 33323 334555555554
No 297
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.16 E-value=0.3 Score=40.52 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=51.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccc----------cHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN----------SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~----------sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
..+|+|+|+ |-||+.+++.+...|..-+-.+|+........+--.|. .+++.+.+.++++-+...+...
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i 99 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKI 99 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeC
Confidence 367999999 99999999999999986333566653221111101111 1333344445555555544433
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCH
Q 030220 128 AAAAIMEAMEAELDLVVCITEGIPQ 152 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~iTtG~~~ 152 (181)
-.+.+++++ .+...||.-++.+..
T Consensus 100 ~~~~~~~~~-~~~DlVi~a~Dn~~~ 123 (200)
T TIGR02354 100 TEENIDKFF-KDADIVCEAFDNAEA 123 (200)
T ss_pred CHhHHHHHh-cCCCEEEECCCCHHH
Confidence 334444443 356666663344333
No 298
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.14 E-value=0.3 Score=42.72 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=27.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 92 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~ 92 (181)
.+.+|+|+|+ |-.|..+++.+...|..-+-.+|+.
T Consensus 29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3478999999 9999999999999886534345544
No 299
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.13 E-value=0.12 Score=39.47 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=58.6
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCC------CC--------eEEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GG--------TEHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~------~G--------~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
|+|+|+ |.+|....-.+.+.|.++.....+.. .| .+....+.+.... .....++|+++++|...
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~viv~vKa~ 78 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAP-SADAGPYDLVIVAVKAY 78 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSH-GHHHSTESEEEE-SSGG
T ss_pred CEEECc-CHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcc-hhccCCCcEEEEEeccc
Confidence 689999 99999998888887877664322220 01 1111112221112 11223799999999999
Q ss_pred HHHHHHHHHHHcCCC--EEEEeCCCCCHHH
Q 030220 127 FAAAAIMEAMEAELD--LVVCITEGIPQHD 154 (181)
Q Consensus 127 ~a~~~~~eaie~GIk--~IV~iTtG~~~ed 154 (181)
...++++.+...--+ .|+.+--|+..++
T Consensus 79 ~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~ 108 (151)
T PF02558_consen 79 QLEQALQSLKPYLDPNTTIVSLQNGMGNEE 108 (151)
T ss_dssp GHHHHHHHHCTGEETTEEEEEESSSSSHHH
T ss_pred chHHHHHHHhhccCCCcEEEEEeCCCCcHH
Confidence 999999986655444 5777789988664
No 300
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.11 E-value=0.47 Score=38.34 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|.+|+.+++.+.+.|.+++ .++..... .. ...+.+.+ ..++ -+..|...++.+.+.++++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~-~~~r~~~~--~~--~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVV-VTDRNEEA--AE--RVAAEILA---GGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCHHH--HH--HHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999966 44433211 10 01111111 0111 23456677888888888775
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..|+. ..|.
T Consensus 77 ~~~~~~d~vi~-~ag~ 91 (251)
T PRK07231 77 ERFGSVDILVN-NAGT 91 (251)
T ss_pred HHhCCCCEEEE-CCCC
Confidence 44 4666776 6565
No 301
>PRK08278 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.61 Score=39.11 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcc--ccccHHHHhhc-cCC-cEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP--VFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvP--Vy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~ 133 (181)
+++++|.|++|-+|+.+++.+.+.|.+++.. +..... ...++ +....+++... .++ -+..|...++.+.+.++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~-~r~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGANIVIA-AKTAEP--HPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eccccc--ccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 3579999999999999999999999997743 332211 01111 11111222111 122 23467888888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+++ ..|+
T Consensus 83 ~~~~~~g~id~li~-~ag~ 100 (273)
T PRK08278 83 KAVERFGGIDICVN-NASA 100 (273)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87765 6888887 6665
No 302
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.01 E-value=0.13 Score=44.55 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=62.6
Q ss_pred CceEEEEccCCCCcc-hhhHHHHH-h--CCeEeeecCCCCCCeE---EcCcccccc-HHHHh---hccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGT-FHTEQAIE-Y--GTKMVGGVTPKKGGTE---HLGLPVFNS-VAEAK---AETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~-~~~k~~~~-~--g~~IVagVdP~~~G~e---i~GvPVy~s-l~e~~---~~~~~DVaIdfVPp~ 126 (181)
..||+|+|- |+.|. ..+|.+.. . .+...-|+||+..|-- -.|+|-.+. ++-++ +..++|.+.+.+.+.
T Consensus 4 k~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa~ 82 (310)
T COG4569 4 KRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSAG 82 (310)
T ss_pred cceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccccc
Confidence 468999997 99999 56666555 2 3445558999988721 157777664 44443 323567888999999
Q ss_pred HHHHHHHHHHHcCCCEEE
Q 030220 127 FAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV 144 (181)
+..+++-...|.||+.|=
T Consensus 83 ~h~~~a~~~ae~gi~~id 100 (310)
T COG4569 83 AHVKNAAALAEAGIRLID 100 (310)
T ss_pred hhhcchHhHHhcCCceee
Confidence 999999999999999873
No 303
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.00 E-value=0.1 Score=47.19 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=53.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccc-----cccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPV-----FNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPV-----y~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
.+|.|+|. |.+|...++.+.+.|.++. +.|..... ....+. ....+.+++ ++|+.|...+...-.+.++
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~~~G~~V~-g~D~~~~~--~~~~~~~~~~~~~~~~~~~~--~~dlvV~s~gi~~~~~~l~ 77 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLAQKGVYVI-GVDKSLEA--LQSCPYIHERYLENAEEFPE--QVDLVVRSPGIKKEHPWVQ 77 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHHHCCCEEE-EEeCCccc--cchhHHHhhhhcCCcHHHhc--CCCEEEECCCCCCCcHHHH
Confidence 57999999 9999998888888898755 66754422 111111 122333333 6898888876666678899
Q ss_pred HHHHcCCC
Q 030220 134 EAMEAELD 141 (181)
Q Consensus 134 eaie~GIk 141 (181)
+|.++|++
T Consensus 78 ~A~~~g~~ 85 (418)
T PRK00683 78 AAIASHIP 85 (418)
T ss_pred HHHHCCCc
Confidence 99999987
No 304
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=93.99 E-value=0.52 Score=40.24 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=29.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
...+|+|.|++|-.|+.+++.+.+.|.+|++.+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 3468999999999999999999999999886543
No 305
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.49 Score=38.05 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|..|+.+++.+.+.|.++++ ++.+... .. .. .+++.+..+++ +..|...++...+.++++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~-~~r~~~~--~~--~~---~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAI-TARDQKE--LE--EA---AAELNNKGNVLGLAADVRDEADVQRAVDAIV 77 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEE-eeCCHHH--HH--HH---HHHHhccCcEEEEEccCCCHHHHHHHHHHHH
Confidence 367999999999999999999988999664 3432211 00 11 11111111233 3346777888888888776
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..|+. ..|
T Consensus 78 ~~~~~~d~vi~-~ag 91 (237)
T PRK07326 78 AAFGGLDVLIA-NAG 91 (237)
T ss_pred HHcCCCCEEEE-CCC
Confidence 64 6888887 444
No 306
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.97 E-value=0.35 Score=39.37 Aligned_cols=84 Identities=14% Similarity=0.053 Sum_probs=54.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh-ccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~-~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.|+|.|++|-+|+.+++.+.+.|.+++. ++..... . .....+++.+ ..+++ +-.|+..++...++++++.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~-~~r~~~~-~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAI-NDRPDDE-E-----LAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQ 75 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEE-EecCchh-H-----HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 45888899999999999999999998774 3422111 0 0011111111 11222 3467888888888888887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. .+..||. ..|+
T Consensus 76 ~~~~~id~vi~-~ag~ 90 (256)
T PRK12745 76 AAWGRIDCLVN-NAGV 90 (256)
T ss_pred HhcCCCCEEEE-CCcc
Confidence 65 5777877 6665
No 307
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.97 E-value=0.1 Score=47.19 Aligned_cols=87 Identities=11% Similarity=-0.037 Sum_probs=60.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC------------------eE---------EcC---ccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG------------------TE---------HLG---LPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G------------------~e---------i~G---vPVy~-- 105 (181)
.||.|-|+ |++|+.+.+.+.+. ++++|+..||...- .+ ++| ++++.
T Consensus 3 ~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~~ 81 (342)
T PTZ00353 3 ITVGINGF-GPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAKH 81 (342)
T ss_pred eEEEEECC-ChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEecC
Confidence 58999999 99999999987764 79999876643110 01 133 44554
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEe
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI 146 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~i 146 (181)
+++++. +++++|+++.++....-.+-+..-+++|.+.+++.
T Consensus 82 dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviis 123 (342)
T PTZ00353 82 DLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVA 123 (342)
T ss_pred CcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEe
Confidence 355543 33589999999988766666666777788877763
No 308
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=93.97 E-value=0.2 Score=47.79 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=54.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeC------------
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP------------ 124 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVP------------ 124 (181)
+.+||+|.|++|-+|+.+.+.+.+.|.++.... + . +.=...+.+.+++.++|++|-+.-
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~-----~-~---l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~ 449 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGK-----G-R---LEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCES 449 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEeec-----c-c---cccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHh
Confidence 557899999999999999999988888873121 1 0 111123555555567888774431
Q ss_pred ---------hHHHHHHHHHHHHcCCCEEEE
Q 030220 125 ---------PPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 125 ---------p~~a~~~~~eaie~GIk~IV~ 145 (181)
-..+..+++.|.+.|++.++.
T Consensus 450 ~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~ 479 (668)
T PLN02260 450 HKVETIRANVVGTLTLADVCRENGLLMMNF 479 (668)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHcCCeEEEE
Confidence 123556788888999987665
No 309
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.90 E-value=0.11 Score=42.85 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=39.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
++|+|+|+ |++|+...+.+.+.|.+|+ ..|.+... .+ ..|....++ +++.. .++|+.+-+
T Consensus 29 k~v~I~G~-G~vG~~~A~~L~~~G~~Vv-v~D~~~~~~~~~~~~~g~~~v~~-~~l~~-~~~Dv~vp~ 92 (200)
T cd01075 29 KTVAVQGL-GKVGYKLAEHLLEEGAKLI-VADINEEAVARAAELFGATVVAP-EEIYS-VDADVFAPC 92 (200)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEEcc-hhhcc-ccCCEEEec
Confidence 67999999 9999999999999999988 55543211 01 113333333 44443 267887744
No 310
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.72 Score=37.35 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=55.6
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~e 134 (181)
+++.+++|.|++|.+|+.+++.+.+.|.+|+. ++.... +.. .+...+++.. .+++ +..|.+.++.....+++
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~-~~r~~~--~~~--~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLAL-VARSQD--ALE--ALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHH--HHH--HHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHH
Confidence 34567999999999999999999999998664 443321 111 0111111110 1222 34577788888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 77 ~~~~~~~id~lv~-~ag~ 93 (241)
T PRK07454 77 LLEQFGCPDVLIN-NAGM 93 (241)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7764 5777877 6665
No 311
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.87 E-value=0.14 Score=41.01 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=55.3
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCc---cccc-cHHHHhhccCCcEEEEeeChHHHH
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL---PVFN-SVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~Gv---PVy~-sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+-=+..+|+|+|+ |+.|..-++.+++.|.+++ .|+|.... ++..+ .+-. .+++.. -.+.|+++..+..+...
T Consensus 9 l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~-VIsp~~~~-~l~~l~~i~~~~~~~~~~d-l~~a~lViaaT~d~e~N 84 (157)
T PRK06719 9 FNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVT-VVSPEICK-EMKELPYITWKQKTFSNDD-IKDAHLIYAATNQHAVN 84 (157)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCccCH-HHHhccCcEEEecccChhc-CCCceEEEECCCCHHHH
Confidence 3334578999999 9999999999999998876 56777543 22222 1111 222221 12689999999888888
Q ss_pred HHHHHHHHcCC
Q 030220 130 AAIMEAMEAEL 140 (181)
Q Consensus 130 ~~~~eaie~GI 140 (181)
..+..+.+.+.
T Consensus 85 ~~i~~~a~~~~ 95 (157)
T PRK06719 85 MMVKQAAHDFQ 95 (157)
T ss_pred HHHHHHHHHCC
Confidence 77776665553
No 312
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=93.86 E-value=0.73 Score=37.39 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.+++. ++..... .....+.+.-. ++ -+-.|...++.+.+.+++..
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~-~~r~~~~------~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 75 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVG-AGRSEPS------ETQQQVEALGR--RFLSLTADLSDIEAIKALVDSAV 75 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EcCchHH------HHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999998774 4432200 11111111100 12 23456777888888888776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 76 ~~~~~~d~li~-~ag~ 90 (248)
T TIGR01832 76 EEFGHIDILVN-NAGI 90 (248)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 54 4777777 5554
No 313
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.83 E-value=0.23 Score=39.91 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=53.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|.+|+.+++.+.+.|.+++..++..... .. ...+.+.+ ...++. +..|...++.+.+.++++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~--~~--~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEA--AQ--ELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHH--HH--HHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998899977543433211 00 01111111 011232 33567778888888877766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..|+. ..|.
T Consensus 80 ~~~~id~vi~-~ag~ 93 (247)
T PRK05565 80 KFGKIDILVN-NAGI 93 (247)
T ss_pred HhCCCCEEEE-CCCc
Confidence 4 6888887 5554
No 314
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=93.82 E-value=0.25 Score=42.61 Aligned_cols=87 Identities=18% Similarity=0.151 Sum_probs=61.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccc-------ccHHHHhhccCCcEEEEeeChHHH--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-------NSVAEAKAETKANASVIYVPPPFA-- 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy-------~sl~e~~~~~~~DVaIdfVPp~~a-- 128 (181)
+.+|+|.|.| ..|+.+++.+.+.|.+++.-|.-..+..+..++++. ..+++++.+++++++||.++|-+.
T Consensus 2 ~~~IlvlgGT-~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~i 80 (248)
T PRK08057 2 MPRILLLGGT-SEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQI 80 (248)
T ss_pred CceEEEEech-HHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHH
Confidence 4579999984 478899988888898866544322211222345554 258888888899999999999664
Q ss_pred -HHHHHHHHHcCCCEEEE
Q 030220 129 -AAAIMEAMEAELDLVVC 145 (181)
Q Consensus 129 -~~~~~eaie~GIk~IV~ 145 (181)
+.+.+-|-+.||+-+=-
T Consensus 81 s~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 81 SANAAAACRALGIPYLRL 98 (248)
T ss_pred HHHHHHHHHHhCCcEEEE
Confidence 45667777889988643
No 315
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.79 E-value=0.75 Score=39.57 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=72.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC--CeEeeecCC-CCCCeEEcCccccc-cHHHHhhc-cCCcEEEEe-eChHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTP-KKGGTEHLGLPVFN-SVAEAKAE-TKANASVIY-VPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g--~~IVagVdP-~~~G~ei~GvPVy~-sl~e~~~~-~~~DVaIdf-VPp~~a~~~ 131 (181)
++||+|+.- |..|...++++...+ -++|+...+ .. +|.|= ..++++.. -++|++|-+ .+|+.....
T Consensus 1 ~mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe~-------~~~fie~P~~~Lp~~~e~Di~va~~lHPDl~~~L 72 (224)
T COG1810 1 MMKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPEE-------LPDFIEEPEDLLPKLPEADIVVAYGLHPDLLLAL 72 (224)
T ss_pred CcEEEEEee-ccchHHHHHhHhhhccccceEEEEecccc-------ccchhhCHHHhcCCCCCCCEEEEeccCccHHHHH
Confidence 478999988 999999999888755 447765554 22 23333 34555543 378999988 999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.+.+.+.|++.+++ ..+=+.--..+|++.+.+
T Consensus 73 ~e~~~~~~~~alIv-p~~~~~g~rkqL~~~~~~ 104 (224)
T COG1810 73 PEKAAEGGVKALIV-PAEPPEGLRKQLKEFCEE 104 (224)
T ss_pred HHHHHhCCccEEEE-ecCCChhHHHHHHHHhhh
Confidence 99999999999987 666666666777776663
No 316
>PRK07985 oxidoreductase; Provisional
Probab=93.78 E-value=1 Score=38.50 Aligned_cols=84 Identities=17% Similarity=0.094 Sum_probs=55.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC--C-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--A-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~--~-DVaIdfVPp~~a~~~~~ea 135 (181)
.+++|.|++|.+|+.+++.+.+.|.+++. ++....... ...+++..++.. + -+..|...++.+.+.++++
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAI-SYLPVEEED------AQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEE-ecCCcchhh------HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 57999999999999999999999999774 332211100 112233222211 2 2456788889999998888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 123 ~~~~g~id~lv~-~Ag~ 138 (294)
T PRK07985 123 HKALGGLDIMAL-VAGK 138 (294)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 764 5777777 4443
No 317
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=93.77 E-value=0.24 Score=39.51 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=56.4
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--------EEcCccccc--cHHHHhhccCCcEEEEeeChH----
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--------EHLGLPVFN--SVAEAKAETKANASVIYVPPP---- 126 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--------ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~---- 126 (181)
|+|.|+||-.|+.+++.+++.|.+++.......... ++.-..+.+ .++++++..++|+++.+.-..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~ 80 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNPE 80 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeeccccccc
Confidence 789999999999999999999999774433222110 011112222 477777766789999886541
Q ss_pred --------------HHHHHHHHHHHcCCCEEEEeC
Q 030220 127 --------------FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 127 --------------~a~~~~~eaie~GIk~IV~iT 147 (181)
....+++.|.+++++.++.++
T Consensus 81 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~s 115 (236)
T PF01370_consen 81 SFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLS 115 (236)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 123456667788996655544
No 318
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=93.76 E-value=0.58 Score=40.34 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=27.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
+++|+|.|++|-+|+.+++.+.+.|.++++.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~ 36 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHGI 36 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 4679999999999999999999999998864
No 319
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.74 E-value=0.053 Score=51.01 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=67.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe------------EEcC-------------ccccccHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT------------EHLG-------------LPVFNSVAEA 110 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~------------ei~G-------------vPVy~sl~e~ 110 (181)
+-.+|.|+|+ |.||+-++..+...|++++. .+++..... .-.| +....+++++
T Consensus 6 ~i~~V~VIGa-G~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~ 84 (507)
T PRK08268 6 SIATVAVIGA-GAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL 84 (507)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 4467999999 99999999999888999663 344432111 0012 4555677664
Q ss_pred hhccCCcEEEEeeChHHHHHHHH-HHHHcCCC--EEEE-eCCCCCHHHHHHHHHHh-hhhchhchh
Q 030220 111 KAETKANASVIYVPPPFAAAAIM-EAMEAELD--LVVC-ITEGIPQHDMVINFTRV-NILLVAFLN 171 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~~a~~~~~-eaie~GIk--~IV~-iTtG~~~ed~~~l~~~a-k~ipv~~~~ 171 (181)
. ++|++|-.+|.+...+..- .-++.-.+ .|+. -|+.++..++..-.... +.+.+-|.|
T Consensus 85 -~--~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~ 147 (507)
T PRK08268 85 -A--DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFN 147 (507)
T ss_pred -C--CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecC
Confidence 4 7999999999877654443 22443322 3442 38888887544322211 125555555
No 320
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.73 E-value=0.87 Score=36.87 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=51.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|.+|+.+++.+.+.|.+++...+... . .. ..+.+... .++. +-.|+..++...+.++++.+
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~-~-~~------~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE-D-AA------EALADELG-DRAIALQADVTDREQVQAMFATATE 76 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH-H-HH------HHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999999999875333221 1 00 01111111 1222 33567778888888887765
Q ss_pred c---CCCEEEEeCCCC
Q 030220 138 A---ELDLVVCITEGI 150 (181)
Q Consensus 138 ~---GIk~IV~iTtG~ 150 (181)
. ++..++. ..|+
T Consensus 77 ~~g~~id~li~-~ag~ 91 (253)
T PRK08642 77 HFGKPITTVVN-NALA 91 (253)
T ss_pred HhCCCCeEEEE-CCCc
Confidence 4 2777777 4443
No 321
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.67 E-value=0.13 Score=48.35 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=58.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC--CCe-EEcCccccc-c--HHHHhhc---cCCcEEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGT-EHLGLPVFN-S--VAEAKAE---TKANASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~--~G~-ei~GvPVy~-s--l~e~~~~---~~~DVaIdfVPp~~a 128 (181)
+.+|+|+|+ |+.|+.+++.+.+.|.+++ .+|++. ..+ +-.|++++. | =+++.++ .++|..+..++.+..
T Consensus 417 ~~hiiI~G~-G~~G~~la~~L~~~g~~vv-vId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 417 CNHALLVGY-GRVGSLLGEKLLAAGIPLV-VIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred CCCEEEECC-ChHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHH
Confidence 356999999 9999999999999888866 455433 110 013555544 2 1222221 278988888877654
Q ss_pred HH-HHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 129 AA-AIMEAMEA-ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 129 ~~-~~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
.. .+..+.+. +...|+.-++ ..++..+++++
T Consensus 495 ~~~iv~~~~~~~~~~~iiar~~--~~~~~~~l~~~ 527 (558)
T PRK10669 495 AGEIVASAREKRPDIEIIARAH--YDDEVAYITER 527 (558)
T ss_pred HHHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHc
Confidence 43 33333332 3344554343 34555666554
No 322
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.65 E-value=0.11 Score=44.14 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=29.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP 91 (181)
..||+|+|+ |+.|+..++.+.+.|.++|+..|.
T Consensus 31 ~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 31 GARVAIQGF-GNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECC
Confidence 488999999 999999999999999999976553
No 323
>PRK06138 short chain dehydrogenase; Provisional
Probab=93.64 E-value=0.57 Score=37.95 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|.+|+.+++.+.+.|.+++. ++..... . -...++.....+++ +-.|...++.+.+++++..
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~-~~r~~~~--~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~ 76 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVV-ADRDAEA--A-----ERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVA 76 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEE-ecCCHHH--H-----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 357999999999999999999998988764 3322211 0 00111111111222 3457788888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..++. ..|.
T Consensus 77 ~~~~~id~vi~-~ag~ 91 (252)
T PRK06138 77 ARWGRLDVLVN-NAGF 91 (252)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 65 6777777 5553
No 324
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.61 E-value=0.56 Score=40.66 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=51.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-eEE---cCccccc-c-------HHHHhhccCCcEEEEe--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH---LGLPVFN-S-------VAEAKAETKANASVIY-- 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~ei---~GvPVy~-s-------l~e~~~~~~~DVaIdf-- 122 (181)
+++|+|.|++|-.|+.+++.+.+. |.+|++. +..... ... .+++++. + ++++.+ ++|++|-+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~-~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~d~ViH~aa 77 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGM-DMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVK--KCDVILPLVA 77 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEE-eCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHc--CCCEEEECcc
Confidence 357999999999999999999886 6888854 321100 001 1233332 3 233344 79998854
Q ss_pred --eChH--------------HHHHHHHHHHHcCCCEEEE
Q 030220 123 --VPPP--------------FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 123 --VPp~--------------~a~~~~~eaie~GIk~IV~ 145 (181)
.|+. ....+++.|.+.|.+.|..
T Consensus 78 ~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~ 116 (347)
T PRK11908 78 IATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFP 116 (347)
T ss_pred cCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3321 2345677777888555544
No 325
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.57 E-value=0.062 Score=50.60 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=70.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe---E--------E-cC-------------ccccccHHHHh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT---E--------H-LG-------------LPVFNSVAEAK 111 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~---e--------i-~G-------------vPVy~sl~e~~ 111 (181)
-.+|.|+|+ |.||+-+...+...|++++. .+++..... . + .| +....+++++
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l- 82 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL- 82 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh-
Confidence 467999999 99999999999999999653 344332110 0 0 12 3345577654
Q ss_pred hccCCcEEEEeeChHHH-HHHHHHHHHcCCC--EEEE-eCCCCCHHHHHH-HHHHhhhhchhchh--hhhhh
Q 030220 112 AETKANASVIYVPPPFA-AAAIMEAMEAELD--LVVC-ITEGIPQHDMVI-NFTRVNILLVAFLN--FIMKL 176 (181)
Q Consensus 112 ~~~~~DVaIdfVPp~~a-~~~~~eaie~GIk--~IV~-iTtG~~~ed~~~-l~~~ak~ipv~~~~--~~~~~ 176 (181)
. ++|++|-.+|.+.. .+.+..-++.-.+ .|++ -|..++..++.. +..-.+.+.+-|.| .+|+|
T Consensus 83 ~--~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~L 152 (503)
T TIGR02279 83 A--DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMAL 152 (503)
T ss_pred C--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCce
Confidence 4 79999999997543 3333333443333 3442 388888876443 33344566666666 44554
No 326
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=93.56 E-value=0.2 Score=47.28 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=60.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-----CCeEeeecCC-CCCCe---------------------E---------EcC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTP-KKGGT---------------------E---------HLG 100 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-----g~~IVagVdP-~~~G~---------------------e---------i~G 100 (181)
+..||+|-|+ |++|+.+.+.+.+. ++++||.++. +..+. + ++|
T Consensus 126 ~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing 204 (477)
T PRK08289 126 EPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANG 204 (477)
T ss_pred CCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECC
Confidence 3578999999 99999999987753 6889987531 11110 0 122
Q ss_pred --ccccc--cHHHHh-hccCCc--EEEEeeChHHHHHHHHHHHH-cCCCEEEE
Q 030220 101 --LPVFN--SVAEAK-AETKAN--ASVIYVPPPFAAAAIMEAME-AELDLVVC 145 (181)
Q Consensus 101 --vPVy~--sl~e~~-~~~~~D--VaIdfVPp~~a~~~~~eaie-~GIk~IV~ 145 (181)
++++. +.++++ .+.++| ++|+++-.-.-.+-+..=++ +|.+.|++
T Consensus 205 ~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkVii 257 (477)
T PRK08289 205 NYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLL 257 (477)
T ss_pred EEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEE
Confidence 34444 466664 345789 99999977777776777777 79998886
No 327
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.55 E-value=0.56 Score=37.44 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=51.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+++|+|.|++|..|+.+++.+.+.|.+++ .++..... .. .+.+.+++.-. ++. +..|...++...+++++..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~-~~~r~~~~--~~--~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVV-IYDSNEEA--AE--ALAAELRAAGG--EARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeCChhH--HH--HHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999854 55543311 10 11111221100 122 1246777777777777665
Q ss_pred Hc--CCCEEEEeC
Q 030220 137 EA--ELDLVVCIT 147 (181)
Q Consensus 137 e~--GIk~IV~iT 147 (181)
+. .+..|+..+
T Consensus 78 ~~~~~id~vi~~a 90 (246)
T PRK05653 78 EAFGALDILVNNA 90 (246)
T ss_pred HHhCCCCEEEECC
Confidence 43 577777744
No 328
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.55 E-value=0.32 Score=39.66 Aligned_cols=85 Identities=19% Similarity=0.107 Sum_probs=53.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCC-cEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~e 134 (181)
+.++|+|.|++|-+|+.+++.+.+.|.+++ .++..... .. .. .+++... .++ -+..|...++....++++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~r~~~~--~~--~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAARTAER--LD--EV---AAEIDDLGRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeCCHHH--HH--HH---HHHHHHhCCceEEEecCCCCHHHHHHHHHH
Confidence 346799999999999999999999999876 34432211 10 01 1222110 011 255677778888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..++. ..|.
T Consensus 76 ~~~~~g~~d~vi~-~ag~ 92 (258)
T PRK07890 76 ALERFGRVDALVN-NAFR 92 (258)
T ss_pred HHHHcCCccEEEE-CCcc
Confidence 7655 5777877 4454
No 329
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.54 E-value=0.2 Score=47.25 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=60.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH-HH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI-ME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~-~e 134 (181)
..+|+|+|+ |++|+.+.+.+...|++|+. ..||....+ ...|+.+. +++++++ .+|+++..+... .++ .+
T Consensus 254 GKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-~leell~--~ADIVI~atGt~---~iI~~e 326 (476)
T PTZ00075 254 GKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-TLEDVVE--TADIFVTATGNK---DIITLE 326 (476)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-cHHHHHh--cCCEEEECCCcc---cccCHH
Confidence 467999999 99999999999999999653 456654311 12355443 6888887 799999987533 333 24
Q ss_pred HHHc-CCCEEEEeCCCCCHHH-HHHHHH
Q 030220 135 AMEA-ELDLVVCITEGIPQHD-MVINFT 160 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~~~ed-~~~l~~ 160 (181)
.++. +-..+++-+..+.+|. +..|+.
T Consensus 327 ~~~~MKpGAiLINvGr~d~Ei~i~aL~~ 354 (476)
T PTZ00075 327 HMRRMKNNAIVGNIGHFDNEIQVAELEA 354 (476)
T ss_pred HHhccCCCcEEEEcCCCchHHhHHHHHh
Confidence 4443 4444544465554433 233443
No 330
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.53 Score=39.01 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc--cCCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~--~~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++.... .. ..+.+.++. .+++ +-+|...++...+++++
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~-~~r~~~--~~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLI-AARTES--QL------DEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCHH--HH------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 456999999999999999999999999774 343321 01 011111111 1223 23677888888888888
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
+.+. ++..++. ..|
T Consensus 81 ~~~~~~~id~vi~-~Ag 96 (263)
T PRK07814 81 AVEAFGRLDIVVN-NVG 96 (263)
T ss_pred HHHHcCCCCEEEE-CCC
Confidence 8775 7888888 445
No 331
>PRK12744 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.65 Score=38.15 Aligned_cols=86 Identities=16% Similarity=0.101 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ 133 (181)
+.+++|.|++|-.|+.+++.+.+.|.+++.. .++.... + .. ..+.+.++.. +++ +-.|...++.+.+.++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~-~--~~---~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 81 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASK-A--DA---EETVAAVKAAGAKAVAFQADLTTAAAVEKLFD 81 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccch-H--HH---HHHHHHHHHhCCcEEEEecCcCCHHHHHHHHH
Confidence 3579999999999999999999999985533 2222211 1 00 1111111111 222 3467888888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+++ ..|+
T Consensus 82 ~~~~~~~~id~li~-~ag~ 99 (257)
T PRK12744 82 DAKAAFGRPDIAIN-TVGK 99 (257)
T ss_pred HHHHhhCCCCEEEE-CCcc
Confidence 88764 5777777 6675
No 332
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=93.50 E-value=0.58 Score=40.49 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=26.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
+|+|.|++|-.|+.+++.+.+.|.+|++.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G~~V~~~ 30 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKGYEVHGL 30 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCCCEEEEE
Confidence 68999999999999999999999998864
No 333
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.49 E-value=0.64 Score=37.68 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.+|+|.|++|.+|+.+++.+.+.|.+++. ++.+... .. .....++.. ..++. +..|+..++.+.++++++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~-~~r~~~~--~~--~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVI-ADLNDEA--AA--AAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEE-EeCCHHH--HH--HHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 357999999999999999999999998774 3433211 00 111111110 01222 4457788888888888776
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..|+. ..|
T Consensus 77 ~~~~~~d~vi~-~a~ 90 (258)
T PRK12429 77 ETFGGVDILVN-NAG 90 (258)
T ss_pred HHcCCCCEEEE-CCC
Confidence 65 6787877 444
No 334
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=93.46 E-value=0.36 Score=40.89 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=47.7
Q ss_pred CccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH--cCCCEEEEeCCCCCHHHHHHHHH
Q 030220 100 GLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME--AELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 100 GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie--~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
|+.++++..++.+ ++|+++++|+|....+++++.-. .+=+.||-++.|++.+++.++..
T Consensus 30 g~~~~~~~~e~~~--~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~ 90 (245)
T TIGR00112 30 GIVASSDAQEAVK--EADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLG 90 (245)
T ss_pred CcEEeCChHHHHh--hCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcC
Confidence 5556677778776 78999999999999999877753 23368899999999999988764
No 335
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=93.45 E-value=0.12 Score=47.57 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=60.7
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
-.+.+..+|.|+|+ |+||+..++.+.+.|-.+++---+.... .+-.|.--|+.+.+..++ .+|+++.+|......++
T Consensus 47 ~~~k~tl~IaIIGf-GnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcer-hpDvvLlctsilsieki 124 (480)
T KOG2380|consen 47 EQWKATLVIAIIGF-GNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCER-HPDVVLLCTSILSIEKI 124 (480)
T ss_pred hhcccceEEEEEec-CcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhc-CCCEEEEEehhhhHHHH
Confidence 34566788999999 9999999999999888877542232211 122467778888887764 69999999998888777
Q ss_pred HHHHH
Q 030220 132 IMEAM 136 (181)
Q Consensus 132 ~~eai 136 (181)
+...-
T Consensus 125 latyp 129 (480)
T KOG2380|consen 125 LATYP 129 (480)
T ss_pred HHhcC
Confidence 76543
No 336
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=93.43 E-value=0.89 Score=37.46 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=50.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~ea 135 (181)
.+.++|.|++|-+|+.+++.+.+.|.+++.. .++... .+ . ++ -+..|...++.+.++++++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~----~~-----------~--~~~~~~~D~~~~~~~~~~~~~~ 71 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG----QH-----------E--NYQFVPTDVSSAEEVNHTVAEI 71 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc----cc-----------C--ceEEEEccCCCHHHHHHHHHHH
Confidence 4568999999999999999999999997742 222221 00 0 11 1335667777888888777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. .+..+|+ ..|+
T Consensus 72 ~~~~g~id~li~-~Ag~ 87 (266)
T PRK06171 72 IEKFGRIDGLVN-NAGI 87 (266)
T ss_pred HHHcCCCCEEEE-CCcc
Confidence 654 5777776 5553
No 337
>PLN00203 glutamyl-tRNA reductase
Probab=93.42 E-value=0.071 Score=50.58 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=50.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE----EcCc--c--ccccHHHHhhccCCcEEEEeeC---h
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLGL--P--VFNSVAEAKAETKANASVIYVP---P 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e----i~Gv--P--Vy~sl~e~~~~~~~DVaIdfVP---p 125 (181)
..+|+|+|+ |.||+.+.+.+...|.+-|..+|+.... .. ..|. . .++++.+++. ++|++|.+++ |
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~--~aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAA--EADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHh--cCCEEEEccCCCCC
Confidence 467999999 9999999999998887534455654321 11 1122 1 2345666666 7999999864 3
Q ss_pred HHHHHHHHHHH
Q 030220 126 PFAAAAIMEAM 136 (181)
Q Consensus 126 ~~a~~~~~eai 136 (181)
-...+.++.+.
T Consensus 343 vI~~e~l~~~~ 353 (519)
T PLN00203 343 LFLKEHVEALP 353 (519)
T ss_pred eeCHHHHHHhh
Confidence 44556666654
No 338
>PRK06523 short chain dehydrogenase; Provisional
Probab=93.42 E-value=0.78 Score=37.60 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=49.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.+++. ++..... ... . +++ +-.|...++.+.+.++++.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~-~~r~~~~-~~~------------~--~~~~~~~D~~~~~~~~~~~~~~~ 72 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVT-TARSRPD-DLP------------E--GVEFVAADLTTAEGCAAVARAVL 72 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEE-EeCChhh-hcC------------C--ceeEEecCCCCHHHHHHHHHHHH
Confidence 367999999999999999999999999774 3332211 000 0 111 2345566777777777776
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..+|+ ..|
T Consensus 73 ~~~~~id~vi~-~ag 86 (260)
T PRK06523 73 ERLGGVDILVH-VLG 86 (260)
T ss_pred HHcCCCCEEEE-CCc
Confidence 65 5777776 555
No 339
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=93.42 E-value=0.42 Score=41.28 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=41.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC-C-----------e--E--EcCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-G-----------T--E--HLGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~-G-----------~--e--i~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
+||+|.|++|-.|+.+++.+.+.|.+.|.+++.... + . + ..++.=..++++++++.++|++|-+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 379999999999999999999988764444542110 0 0 0 0112212245666665568988887
Q ss_pred eC
Q 030220 123 VP 124 (181)
Q Consensus 123 VP 124 (181)
..
T Consensus 81 A~ 82 (352)
T PRK10084 81 AA 82 (352)
T ss_pred Cc
Confidence 63
No 340
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.38 E-value=0.052 Score=41.93 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE----EcC--cc--ccccHHHHhhccCCcEEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLG--LP--VFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e----i~G--vP--Vy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
..+|+|+|+ |.+|+.++..+.+.|++-+..+|+.... ++ +.+ +. -|+++.+.+. ++|++|-++|....
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~--~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQ--EADIVINATPSGMP 88 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHH--TESEEEE-SSTTST
T ss_pred CCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHh--hCCeEEEecCCCCc
Confidence 578999999 9999999999999999955567765421 11 111 22 2445666666 79999999987654
Q ss_pred HHHHHHHHHcCC---CEEEEe
Q 030220 129 AAAIMEAMEAEL---DLVVCI 146 (181)
Q Consensus 129 ~~~~~eaie~GI---k~IV~i 146 (181)
..-++.++... +.++=+
T Consensus 89 -~i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 89 -IITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp -SSTHHHHTTTCHHCSEEEES
T ss_pred -ccCHHHHHHHHhhhhceecc
Confidence 34445555553 355443
No 341
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.38 E-value=1.1 Score=36.02 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|.+|+.+++.+.+.|.+++.. +..... .. ...+++... .+++ +..|+..++...+.++++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~-~r~~~~--~~-----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFN-DGLAAE--AR-----ELAAALEAAGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEE-eCCHHH--HH-----HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4679999999999999999999999997753 332210 10 011222111 1233 345778888888888877
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..++. ..|.
T Consensus 79 ~~~~~~id~vi~-~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVN-NAGI 94 (250)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 764 6788877 5554
No 342
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.33 E-value=0.31 Score=41.66 Aligned_cols=89 Identities=15% Similarity=0.013 Sum_probs=56.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE------------E----------------cCcc--cc-ccH-
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE------------H----------------LGLP--VF-NSV- 107 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e------------i----------------~GvP--Vy-~sl- 107 (181)
||+|+|+ |-.|..+.+.+...|+.-+-.+|+...... + .++. .| ..+
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 5899999 999999999998888774444444332210 0 0111 12 122
Q ss_pred ------HHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCCCCC
Q 030220 108 ------AEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 108 ------~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~iTtG~~ 151 (181)
+++.+ ++|++|+++-.-.+.. +-+.|.+.+++.|-+-|+|+.
T Consensus 80 ~~~~~~~~f~~--~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~ 128 (234)
T cd01484 80 PEQDFNDTFFE--QFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFK 128 (234)
T ss_pred hhhhchHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCc
Confidence 23344 6888888866655544 555667788888877677664
No 343
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=93.32 E-value=0.35 Score=41.74 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=54.6
Q ss_pred EEEccCCCCcchhhHHHHHhC--CeEeee-cCCCCCC----eEE-------cCccccccHHHHhhccCCcEEEEe---eC
Q 030220 62 ICQGITGKNGTFHTEQAIEYG--TKMVGG-VTPKKGG----TEH-------LGLPVFNSVAEAKAETKANASVIY---VP 124 (181)
Q Consensus 62 iVvGatGkmG~~~~k~~~~~g--~~IVag-VdP~~~G----~ei-------~GvPVy~sl~e~~~~~~~DVaIdf---VP 124 (181)
+|.|++|-+|+.+++.+++.| .+|.+. ..+.... ... .++-=+.+++++++ ++|+++-+ ++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~--g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE--GVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc--CCceEEEeCcccc
Confidence 478999999999999999988 565532 2222111 011 12222335777777 78887766 22
Q ss_pred h--------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 125 P--------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 125 p--------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
+ ..++.+++.|.++||+.+|..+
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytS 115 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTS 115 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2 3456788899999999987633
No 344
>PLN02477 glutamate dehydrogenase
Probab=93.26 E-value=0.52 Score=43.63 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=29.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP 91 (181)
..+|+|+|+ |+.|+...+.+.+.|.+||+..|.
T Consensus 206 g~~VaIqGf-GnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGF-GNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECC
Confidence 478999999 999999999999999999986554
No 345
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=93.23 E-value=0.43 Score=44.27 Aligned_cols=35 Identities=17% Similarity=0.027 Sum_probs=27.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |-.|.++.|++.-.|+.-+-.+|+..
T Consensus 20 ~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCc
Confidence 478999999 67999999999988876444566554
No 346
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=93.22 E-value=1.1 Score=36.78 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=53.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
..++|.|++|.+|+.+++.+.+.|.++++ ++..... .....+.+. ..++ -+-.|...++.+.+.++++.+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~-~~~~~~~------~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVG-INIVEPT------ETIEQVTAL--GRRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEE-ecCcchH------HHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999874 4533211 011111111 0011 234566778888888888776
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 82 ~~~~~D~li~-~Ag~ 95 (253)
T PRK08993 82 EFGHIDILVN-NAGL 95 (253)
T ss_pred HhCCCCEEEE-CCCC
Confidence 5 5677776 5654
No 347
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.18 E-value=0.57 Score=41.86 Aligned_cols=100 Identities=15% Similarity=0.060 Sum_probs=60.6
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhC--CeEeeecCCCC-CCe--EE----cCccccc--c---HHHHhhccCCcEEE
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKK-GGT--EH----LGLPVFN--S---VAEAKAETKANASV 120 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g--~~IVagVdP~~-~G~--ei----~GvPVy~--s---l~e~~~~~~~DVaI 120 (181)
.+++.||.|+|+.|+.|+..+..+...+ -+++ .+|..+ .++ ++ ....+.. + ..+.++ ++|++|
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elv-L~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~--gaDvVV 81 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELS-LYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR--GADLVL 81 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEE-EEecCCCcccccchhhcCcCceEEEecCCCchHHHhC--CCCEEE
Confidence 5678899999999999998887776433 3333 444322 221 11 0123432 2 245555 799999
Q ss_pred EeeCh----------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030220 121 IYVPP----------------PFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 121 dfVPp----------------~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l 158 (181)
++.-. ..+.++++.+.++|++.++.+++ -|..-+..+
T Consensus 82 itaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~S-NPvdv~~~~ 134 (321)
T PTZ00325 82 ICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVS-NPVNSTVPI 134 (321)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CcHHHHHHH
Confidence 77533 14556777888899999877443 344444433
No 348
>PLN02427 UDP-apiose/xylose synthase
Probab=93.17 E-value=0.59 Score=41.26 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=26.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGG 88 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVag 88 (181)
.+||+|.|++|-.|+.+++.+.+. |.+|++.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l 45 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLAL 45 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence 367999999999999999999987 5888754
No 349
>PRK12827 short chain dehydrogenase; Provisional
Probab=93.17 E-value=1.2 Score=35.84 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
+++++|.|++|-+|+.+++.+.+.|.+++. ++...... .+-...+.+-.... ++. +-.|...++...+++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~~v~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGADVIV-LDIHPMRG----RAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEE-EcCccccc----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 467999999999999999999999999774 33221110 01111111111111 222 34566778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..|+. ..|.
T Consensus 81 ~~~~~~~~d~vi~-~ag~ 97 (249)
T PRK12827 81 GVEEFGRLDILVN-NAGI 97 (249)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 7765 5777777 6564
No 350
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.15 E-value=0.17 Score=41.12 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=43.1
Q ss_pred CceEEEEccCCCC-cchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKN-GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkm-G~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
..+|+|+|+ |.| |...++.+.+.|.++. .++.. ++++.+.+. ++|++|-.++...
T Consensus 44 gk~vlViG~-G~~~G~~~a~~L~~~g~~V~-v~~r~-----------~~~l~~~l~--~aDiVIsat~~~~ 99 (168)
T cd01080 44 GKKVVVVGR-SNIVGKPLAALLLNRNATVT-VCHSK-----------TKNLKEHTK--QADIVIVAVGKPG 99 (168)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCCEEE-EEECC-----------chhHHHHHh--hCCEEEEcCCCCc
Confidence 478999999 987 8889999999888744 45543 246677777 7999999998865
No 351
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.08 E-value=0.43 Score=38.73 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=28.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 92 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~ 92 (181)
.+|+|.|++|.+|+.+++.+.+.|++++ .++++
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~-~~~r~ 39 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVI-LVARH 39 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeCC
Confidence 5799999999999999999999999876 44544
No 352
>PRK08017 oxidoreductase; Provisional
Probab=93.08 E-value=1.6 Score=35.46 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=48.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|.+|+.+++.+.+.|.+++.. +.+... ++++.+ .+++ +..|...++...+.++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~-~r~~~~-----------~~~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~ 69 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAA-CRKPDD-----------VARMNS-LGFTGILLDLDDPESVERAADEVIA 69 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE-eCCHHH-----------hHHHHh-CCCeEEEeecCCHHHHHHHHHHHHH
Confidence 369999999999999999999989887643 322111 111111 1222 33456667776776666654
Q ss_pred ---cCCCEEEEeCCCC
Q 030220 138 ---AELDLVVCITEGI 150 (181)
Q Consensus 138 ---~GIk~IV~iTtG~ 150 (181)
.++..++. ..|+
T Consensus 70 ~~~~~~~~ii~-~ag~ 84 (256)
T PRK08017 70 LTDNRLYGLFN-NAGF 84 (256)
T ss_pred hcCCCCeEEEE-CCCC
Confidence 34666666 5554
No 353
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.05 E-value=1.5 Score=35.34 Aligned_cols=80 Identities=20% Similarity=0.142 Sum_probs=50.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|-+|+.+++.+.+.|.+++. ++.+.. .+++..++...+ +-.|....+...+..++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVAI-TGRDPA-----------SLEAARAELGESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-ecCCHH-----------HHHHHHHHhCCceEEEEecCCCHHHHHHHHHH
Confidence 357999999999999999999999998763 443321 112222211112 23466667777777776
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 74 ~~~~~~~id~vi~-~ag~ 90 (249)
T PRK06500 74 LAEAFGRLDAVFI-NAGV 90 (249)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 6654 5777777 4454
No 354
>PLN02650 dihydroflavonol-4-reductase
Probab=93.05 E-value=0.48 Score=41.13 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCe------------E---E-cCccccccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGT------------E---H-LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~------------e---i-~GvPVy~sl~e~~~~~~~DVaI 120 (181)
.++|+|.|++|-.|+.+++.+.+.|.+|++. .++..... . + .++.-..+++++++ ++|.+|
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~--~~d~Vi 82 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR--GCTGVF 82 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh--CCCEEE
Confidence 4579999999999999999999999998763 33322110 0 0 11222224566665 688877
Q ss_pred EeeC---------hH--------HHHHHHHHHHHcC-CCEEEEeC
Q 030220 121 IYVP---------PP--------FAAAAIMEAMEAE-LDLVVCIT 147 (181)
Q Consensus 121 dfVP---------p~--------~a~~~~~eaie~G-Ik~IV~iT 147 (181)
-+.. .. ....+++.|.+++ ++.+|.++
T Consensus 83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S 127 (351)
T PLN02650 83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS 127 (351)
T ss_pred EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 6542 11 2344566666767 77666544
No 355
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.04 E-value=0.86 Score=36.90 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
+.+|+|.|++|..|+.+++.+.+.|.+++....+... +. .+.+++..+. .+.. +..|...++...++++++
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAE--EM-----NETLKMVKENGGEGIGVLADVSTREGCETLAKAT 78 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChH--HH-----HHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHH
Confidence 4679999999999999999999999997754433221 11 1112221110 0111 335667777777777777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..|+. ..|+
T Consensus 79 ~~~~~~~d~vi~-~ag~ 94 (252)
T PRK06077 79 IDRYGVADILVN-NAGL 94 (252)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 654 6777777 6664
No 356
>PRK12743 oxidoreductase; Provisional
Probab=93.04 E-value=0.63 Score=38.31 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|.+|+.+++.+.+.|.+++......... . -.+...+++.- .+++ +..|...++.+.+.++++.+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~--~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG--A--KETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQ 76 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH--H--HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999987543332211 0 01111222111 1233 34678888888888888876
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. .+..+|+ ..|+
T Consensus 77 ~~~~id~li~-~ag~ 90 (256)
T PRK12743 77 RLGRIDVLVN-NAGA 90 (256)
T ss_pred HcCCCCEEEE-CCCC
Confidence 4 5777777 5554
No 357
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.98 E-value=1.3 Score=37.71 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCcE---EEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KANA---SVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~DV---aIdfVPp~~a~~~~ 132 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++.+.. .++++.++. ..++ ..|.+.++.+.+++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r~~~-----------~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~ 76 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLAL-VDLEEA-----------ELAALAAELGGDDRVLTVVADVTDLAAMQAAA 76 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHhcCCCcEEEEEecCCCHHHHHHHH
Confidence 356999999999999999999999998663 333221 111111111 1222 26888899999998
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030220 133 MEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 133 ~eaie~--GIk~IV~iTtG~ 150 (181)
+++.+. .+..+|+ ..|+
T Consensus 77 ~~~~~~~g~id~vI~-nAG~ 95 (296)
T PRK05872 77 EEAVERFGGIDVVVA-NAGI 95 (296)
T ss_pred HHHHHHcCCCCEEEE-CCCc
Confidence 888764 5888887 6665
No 358
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.97 E-value=0.1 Score=46.05 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=65.3
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCC-eE----E---cCc--cccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----H---LGL--PVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G-~e----i---~Gv--PVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+++|+|+ |.+|+.+...+.. .+++.|..+|+.... ++ + .++ .+|.+++++.. ++|+++.++|..
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDiVi~aT~s~ 203 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIE--EADIIVTVTNAK 203 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHh--cCCEEEEccCCC
Confidence 367999999 9999998887765 588877777765322 11 1 133 45788999887 899999999977
Q ss_pred HHHHHHHHHHHcCCCEEEEeCC---CCCHHHHHHH
Q 030220 127 FAAAAIMEAMEAELDLVVCITE---GIPQHDMVIN 158 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTt---G~~~ed~~~l 158 (181)
. .-.. ++++.|.+.+-+ .. +..|-+..-+
T Consensus 204 ~-p~i~-~~l~~G~hV~~i-Gs~~p~~~E~~~~~~ 235 (325)
T PRK08618 204 T-PVFS-EKLKKGVHINAV-GSFMPDMQELPSEAI 235 (325)
T ss_pred C-cchH-HhcCCCcEEEec-CCCCcccccCCHHHH
Confidence 4 3334 888889886443 33 4555554333
No 359
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.93 E-value=0.11 Score=45.44 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=47.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-E--EcCccc--cccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-e--i~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
..||+|+|+ |.+|+.+.+.+...|.++.. +|+..... . -.|... |+++.+.+. ++|++|.++|+....+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v-~~r~~~~~~~~~~~G~~~~~~~~l~~~l~--~aDiVI~t~p~~~i~~ 225 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGANVTV-GARKSAHLARITEMGLSPFHLSELAEEVG--KIDIIFNTIPALVLTK 225 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHcCCeeecHHHHHHHhC--CCCEEEECCChhhhhH
Confidence 478999999 99999999999998987553 34332110 0 123332 235667666 7999999999865443
No 360
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=92.90 E-value=1.1 Score=36.71 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|.+|+.+++.+.+.|.+++. ++..... .. . ..+++.+. .++. +..|...++.+.+.++++
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl-~~r~~~~--~~--~---~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEIII-NDITAER--AE--L---AVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEE-EcCCHHH--HH--H---HHHHHHhcCCeEEEEecCCCCHHHHHHHHHHH
Confidence 356999999999999999999999998774 3322110 00 0 11222111 0111 235677788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|.
T Consensus 81 ~~~~~~id~vi~-~ag~ 96 (254)
T PRK08085 81 EKDIGPIDVLIN-NAGI 96 (254)
T ss_pred HHhcCCCCEEEE-CCCc
Confidence 765 5788887 6664
No 361
>PRK06841 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.48 Score=38.63 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.+++ .++...... . ...+... .++ =+..|...++...+.++++.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi-~~~r~~~~~-----~---~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~ 84 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVA-LLDRSEDVA-----E---VAAQLLG-GNAKGLVCDVSDSQSVEAAVAAVI 84 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCHHHH-----H---HHHHhhC-CceEEEEecCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999876 444432110 0 1111111 111 24467778888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..++. ..|.
T Consensus 85 ~~~~~~d~vi~-~ag~ 99 (255)
T PRK06841 85 SAFGRIDILVN-SAGV 99 (255)
T ss_pred HHhCCCCEEEE-CCCC
Confidence 65 6777777 5554
No 362
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=92.86 E-value=0.7 Score=39.09 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=26.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhC--CeEeeecC
Q 030220 60 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVT 90 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g--~~IVagVd 90 (181)
+|+|.|+||..|+.+++.+.+.| .+|++.+-
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R 33 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVR 33 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 48999999999999999999887 66887653
No 363
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=92.86 E-value=0.27 Score=44.22 Aligned_cols=85 Identities=13% Similarity=0.062 Sum_probs=61.0
Q ss_pred eEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCC-----------------------e---EEcC---ccccc--
Q 030220 60 RVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG-----------------------T---EHLG---LPVFN-- 105 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G-----------------------~---ei~G---vPVy~-- 105 (181)
||.|-|+ |+.|+.+.+.+.+. ++++|+..|+.... . .+.| +.|+.
T Consensus 1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 6899999 99999999987764 68899865542100 0 0112 23442
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++++. ++.++|+++.++......+.+...+++|.+.|++
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~i 120 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 120 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEe
Confidence 344442 3347999999999999999999999999999887
No 364
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.84 E-value=0.41 Score=40.80 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---------------------------Ec-C--ccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---------------------------HL-G--LPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---------------------------i~-G--vPVy~-- 105 (181)
+.+|+|+|+ |-.|+.+++.+...|..-+-.+|+...... ++ . +..++
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence 467999999 999999999999888753334454332110 00 1 11121
Q ss_pred ----cHHHHhhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 106 ----SVAEAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp-~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
++.++.. .++|++|+++-. +.-....+.|.+++++.|...+.|
T Consensus 90 i~~~~~~~l~~-~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 90 LTPDNSEDLLG-GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred cCHhHHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 2333332 257888887543 333446667777788887766655
No 365
>PRK07060 short chain dehydrogenase; Provisional
Probab=92.84 E-value=1.5 Score=35.32 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=47.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|..|+.+++.+.+.|.+++. ++... + .+++..+..+++ +..|+..++.+.+..+. .
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~-~~r~~--~---------~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~--~ 75 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVA-AARNA--A---------ALDRLAGETGCEPLRLDVGDDAAIRAALAA--A 75 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEE-EeCCH--H---------HHHHHHHHhCCeEEEecCCCHHHHHHHHHH--h
Confidence 57999999999999999999998988764 44332 1 112222211222 33566666655555544 2
Q ss_pred cCCCEEEEeCCCC
Q 030220 138 AELDLVVCITEGI 150 (181)
Q Consensus 138 ~GIk~IV~iTtG~ 150 (181)
.++..|++ ..|.
T Consensus 76 ~~~d~vi~-~ag~ 87 (245)
T PRK07060 76 GAFDGLVN-CAGI 87 (245)
T ss_pred CCCCEEEE-CCCC
Confidence 35777877 5554
No 366
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=92.83 E-value=0.29 Score=45.72 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=64.6
Q ss_pred CcchhhHHHHHhCCeEee-ecCCCCCCeEE------cCccccccHHHHhhcc-CCcEEEEeeChHH-HHHHHHHHHHcCC
Q 030220 70 NGTFHTEQAIEYGTKMVG-GVTPKKGGTEH------LGLPVFNSVAEAKAET-KANASVIYVPPPF-AAAAIMEAMEAEL 140 (181)
Q Consensus 70 mG~~~~k~~~~~g~~IVa-gVdP~~~G~ei------~GvPVy~sl~e~~~~~-~~DVaIdfVPp~~-a~~~~~eaie~GI 140 (181)
||+..+.++.+.|++++. ..+|.+...-. .|+..+++++|+.+.. ++|++++.+|... +.++++.++..--
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~ 80 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLE 80 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCC
Confidence 899999999999999763 23333321101 2477888999998743 4899999999874 4555566555421
Q ss_pred --CEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 141 --DLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 141 --k~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
+.||- ++....+|..++.+.+++..+.|
T Consensus 81 ~GdiiID-~gn~~~~~t~~~~~~l~~~Gi~f 110 (459)
T PRK09287 81 KGDIIID-GGNSNYKDTIRREKELAEKGIHF 110 (459)
T ss_pred CCCEEEE-CCCCCHHHHHHHHHHHHhcCCeE
Confidence 23554 55566667777777776655543
No 367
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=92.77 E-value=1.3 Score=40.24 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=54.3
Q ss_pred cchhhHHHHHhCCeEe-eecCCCCCCe------EEcCccccccHHHHhhccCCcEEEEeeChHHH-HHHHHHHHHcCC--
Q 030220 71 GTFHTEQAIEYGTKMV-GGVTPKKGGT------EHLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIMEAMEAEL-- 140 (181)
Q Consensus 71 G~~~~k~~~~~g~~IV-agVdP~~~G~------ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a-~~~~~eaie~GI-- 140 (181)
|+..++.+.+.|+++. ...|+..... .-.|..+.++..++.+ ++|+++.++|...+ .++++.++++--
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa--~ADVVIL~LPd~aaV~eVl~GLaa~L~~G 109 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK--HGEIHVLFTPFGKGTFSIARTIIEHVPEN 109 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh--CCCEEEEecCCHHHHHHHHHHHHhcCCCC
Confidence 4466777777899865 3344432110 1148888899999988 79999999998874 466555444422
Q ss_pred CEEEEeCCCCCHHHHHHHHH
Q 030220 141 DLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 141 k~IV~iTtG~~~ed~~~l~~ 160 (181)
+.||. ++=++.+..-++.+
T Consensus 110 aIVID-~STIsP~t~~~~~e 128 (341)
T TIGR01724 110 AVICN-TCTVSPVVLYYSLE 128 (341)
T ss_pred CEEEE-CCCCCHHHHHHHHH
Confidence 24555 44455555544444
No 368
>PRK06198 short chain dehydrogenase; Provisional
Probab=92.71 E-value=1.3 Score=36.16 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ 133 (181)
..+|+|.|++|..|+.+++.+.+.|.+ |+ .++..... . + ...+++ ++...+ +-+|+..++.+.+.++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~~~V~-~~~r~~~~--~---~--~~~~~l-~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGAAGLV-ICGRNAEK--G---E--AQAAEL-EALGAKAVFVQADLSDVEDCRRVVA 76 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCCeEE-EEcCCHHH--H---H--HHHHHH-HhcCCeEEEEEccCCCHHHHHHHHH
Confidence 466999999999999999999998888 55 45543211 1 1 111222 111222 4467788888888888
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030220 134 EAMEA--ELDLVVCITEGIP 151 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~~ 151 (181)
.+.+. ++..++. ..|..
T Consensus 77 ~~~~~~g~id~li~-~ag~~ 95 (260)
T PRK06198 77 AADEAFGRLDALVN-AAGLT 95 (260)
T ss_pred HHHHHhCCCCEEEE-CCCcC
Confidence 77654 6888887 66653
No 369
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.68 E-value=0.9 Score=37.51 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=55.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|+++-+|+.+++.+.+.|.+++. ++.... +...+..++. ++. +.+|...++.+.+++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~-~~~~~~----------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVG-VGVAEA----------PETQAQVEALGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-ecCchH----------HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHH
Confidence 466899999999999999999999999874 333210 0111112211 222 45688889999999998
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 77 ~~~~~g~iD~lv~-~ag~ 93 (251)
T PRK12481 77 AVEVMGHIDILIN-NAGI 93 (251)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 8765 5777887 6665
No 370
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=92.67 E-value=0.14 Score=40.34 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=56.5
Q ss_pred EEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCCe------E-------E-----------------cCccccc---
Q 030220 61 VICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGT------E-------H-----------------LGLPVFN--- 105 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G~------e-------i-----------------~GvPVy~--- 105 (181)
|+|.|+||..|+...+.+.++ .|+|++...-+.... + + .++.+|.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 578999999999888888885 588887533111110 0 0 1444554
Q ss_pred cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.+.|+.+..++|+++..+.-.....-...|+++|.+..+.
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLA 120 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALA 120 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE-
T ss_pred HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEe
Confidence 2556666568899999999999999999999999776543
No 371
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=92.66 E-value=0.34 Score=44.35 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=69.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCe----Eee---------e--------cCCCCCC-eEE------cCccccccH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTK----MVG---------G--------VTPKKGG-TEH------LGLPVFNSV 107 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~----IVa---------g--------VdP~~~G-~ei------~GvPVy~sl 107 (181)
..||+++|. |+.|+.+.+.+.+. .+. .|. + +|-.... +-+ ..+.+-+++
T Consensus 21 ~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 21 PLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred ceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 478999998 99999988877663 221 111 0 1111100 000 235566688
Q ss_pred HHHhhccCCcEEEEeeChHHHHHHHHHHHHc---CCCEEEEeCCCCCHH-------HHHHHHHHhhhhchh
Q 030220 108 AEAKAETKANASVIYVPPPFAAAAIMEAMEA---ELDLVVCITEGIPQH-------DMVINFTRVNILLVA 168 (181)
Q Consensus 108 ~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~---GIk~IV~iTtG~~~e-------d~~~l~~~ak~ipv~ 168 (181)
.++.. +.|+.|..+|+++..++++++... ++..|-+ +-||... -+.++...+-.||+.
T Consensus 100 ~ea~~--dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL-~KG~e~~~~g~~i~liS~iI~~~lgI~~~ 167 (372)
T KOG2711|consen 100 VEAAK--DADILVFVVPHQFIPRICEQLKGYVKPGATAISL-IKGVEVGEEGPGIRLISQIIHRALGIPCS 167 (372)
T ss_pred HHHhc--cCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEe-ecceeccCCCCceeehHHHHHHHhCCCce
Confidence 88877 899999999999999999998754 6666655 7787743 344455445455544
No 372
>PRK05884 short chain dehydrogenase; Provisional
Probab=92.62 E-value=1.1 Score=36.60 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=44.9
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHHc
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie~ 138 (181)
|++|.|++|.+|+.+++.+.+.|.+++. ++.+.. .+++..++.+++ +..|...++...+++++..+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~-~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~- 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTL-VGARRD-----------DLEVAAKELDVDAIVCDNTDPASLEEARGLFPH- 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHhccCcEEecCCCCHHHHHHHHHHHhh-
Confidence 6999999999999999999998998774 343321 111221111122 22455666666666555432
Q ss_pred CCCEEEE
Q 030220 139 ELDLVVC 145 (181)
Q Consensus 139 GIk~IV~ 145 (181)
.+..+|+
T Consensus 69 ~id~lv~ 75 (223)
T PRK05884 69 HLDTIVN 75 (223)
T ss_pred cCcEEEE
Confidence 5777776
No 373
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=92.61 E-value=0.47 Score=38.81 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|++|..|+.+++.+.+.|.+++. ++.... ... .+...+++. ..+++ +-.|...++.+.+.++++.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~-~~r~~~--~~~--~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLV-NGRNAA--TLE--AAVAALRAA--GGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEE-EeCCHH--HHH--HHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHH
Confidence 467999999999999999999999998774 443320 110 111111110 11233 2346677888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. .+..++. ..|.
T Consensus 84 ~~~~~id~vi~-~ag~ 98 (256)
T PRK06124 84 AEHGRLDILVN-NVGA 98 (256)
T ss_pred HhcCCCCEEEE-CCCC
Confidence 63 4667777 5564
No 374
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=92.61 E-value=0.52 Score=42.09 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=58.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE------------E----------------cCccc--cc-cH-
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE------------H----------------LGLPV--FN-SV- 107 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e------------i----------------~GvPV--y~-sl- 107 (181)
||+|+|+ |-.|.++++.+...|+.-+..+|+...... + .++.| |. .+
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 6899999 999999999999889886666665543311 0 12222 21 12
Q ss_pred -----HHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCCCC
Q 030220 108 -----AEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 108 -----~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~iTtG~ 150 (181)
.+..+ ++|++|+..-...+.. +-+.|.+.+++.|-+-|.|+
T Consensus 80 ~~~~~~~f~~--~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~ 126 (312)
T cd01489 80 DPDFNVEFFK--QFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGF 126 (312)
T ss_pred CccchHHHHh--cCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcc
Confidence 23444 6888888876666555 55566778888887666664
No 375
>PRK06046 alanine dehydrogenase; Validated
Probab=92.55 E-value=0.16 Score=44.87 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=56.2
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe-----EE---cC--ccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT-----EH---LG--LPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~-----ei---~G--vPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|+ |.+|+.+.+.+.. .+++.+...|+..... ++ .| +.++++++++++ +|+++.++|..
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aTps~ 204 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTTPSR 204 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEecCCC
Confidence 467999999 9999999998876 4888888878765321 11 24 456889999874 89999999975
Q ss_pred HHHHHHHHHHHcCCCE
Q 030220 127 FAAAAIMEAMEAELDL 142 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~ 142 (181)
.-. .-.+.++.|.+.
T Consensus 205 ~P~-~~~~~l~~g~hV 219 (326)
T PRK06046 205 KPV-VKAEWIKEGTHI 219 (326)
T ss_pred CcE-ecHHHcCCCCEE
Confidence 411 123345666653
No 376
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.53 E-value=0.67 Score=41.46 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=67.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC-C-eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-G-TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI--- 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~-G-~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~--- 132 (181)
.+++.|+|. |+.|+.+.+.+..+|++|.+ .|+... . .+..+.. |-+++|+++ +.|++++..|...--..+
T Consensus 146 gktvGIiG~-GrIG~avA~r~~~Fgm~v~y-~~~~~~~~~~~~~~~~-y~~l~ell~--~sDii~l~~Plt~~T~hLin~ 220 (324)
T COG1052 146 GKTLGIIGL-GRIGQAVARRLKGFGMKVLY-YDRSPNPEAEKELGAR-YVDLDELLA--ESDIISLHCPLTPETRHLINA 220 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcCCCEEEE-ECCCCChHHHhhcCce-eccHHHHHH--hCCEEEEeCCCChHHhhhcCH
Confidence 467999999 99999999999988999774 343321 1 1122333 445999998 899999999975543322
Q ss_pred HHHHHcCCCE-EEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 133 MEAMEAELDL-VVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 133 ~eaie~GIk~-IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
+..-..+-.. +|+ |.-=+.-|...|.++-++--++
T Consensus 221 ~~l~~mk~ga~lVN-taRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 221 EELAKMKPGAILVN-TARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred HHHHhCCCCeEEEE-CCCccccCHHHHHHHHHhCCcc
Confidence 2222334434 455 5555556666666666555444
No 377
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.53 E-value=0.73 Score=37.16 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+++ .++..... .....+++.+ ...+ +-+|...++.+.+.++.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi-~~~r~~~~-------~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLA-LIDLNQEK-------LEEAVAECGA-LGTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCCHHH-------HHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 45699999999999999999999898866 45543211 1111122211 1122 45667778888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..||. ..|.
T Consensus 76 ~~~~~~~id~vi~-~ag~ 92 (253)
T PRK08217 76 IAEDFGQLNGLIN-NAGI 92 (253)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7653 5788887 5554
No 378
>PRK12937 short chain dehydrogenase; Provisional
Probab=92.50 E-value=1.8 Score=34.79 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|-.|+.+++.+.+.|.+++....+.. . .. -...+++... .+++ +-+|...++...+.++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~-~-~~-----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSA-A-AA-----DELVAEIEAAGGRAIAVQADVADAAAVTRLFDAA 77 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCH-H-HH-----HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 367999999999999999999999998774432221 0 00 0011121110 1222 335677788888888877
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..++. ..|+
T Consensus 78 ~~~~~~id~vi~-~ag~ 93 (245)
T PRK12937 78 ETAFGRIDVLVN-NAGV 93 (245)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 654 6888887 5664
No 379
>PRK09135 pteridine reductase; Provisional
Probab=92.49 E-value=0.86 Score=36.64 Aligned_cols=87 Identities=11% Similarity=0.086 Sum_probs=52.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.++++ +++.... ... .....+.+... ..+. +..|.+-.+....+++++.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~-~~r~~~~-~~~--~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVAI-HYHRSAA-EAD--ALAAELNALRP-GSAAALQADLLDPDALPELVAACV 80 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EcCCCHH-HHH--HHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHH
Confidence 357999999999999999999999999874 4443211 000 00011111100 0111 3346677777788777776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..|+. ..|.
T Consensus 81 ~~~~~~d~vi~-~ag~ 95 (249)
T PRK09135 81 AAFGRLDALVN-NASS 95 (249)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 55 5777777 5553
No 380
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=92.48 E-value=0.4 Score=42.36 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=72.8
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhcc-CCcEEEEeeChH-HHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAIMEA 135 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~-~~DVaIdfVPp~-~a~~~~~ea 135 (181)
++-++|. ||||..+.+.+++.|-++|+ .+||..... .-.|...-+|++|++.+. .|.++=+-||+. .+..+++++
T Consensus 2 ~iGmiGL-GrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 2 QIGMIGL-GRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred cceeecc-chhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 5788999 99999999999999999776 577665321 114667777888887764 578888888887 666666665
Q ss_pred HHcCCC-EEEEeCCCCCHHHHHHHHHHhhhhchhch
Q 030220 136 MEAELD-LVVCITEGIPQHDMVINFTRVNILLVAFL 170 (181)
Q Consensus 136 ie~GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv~~~ 170 (181)
-..==+ -||+=...-.-+|..+-.+..++..|.|+
T Consensus 81 a~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~fl 116 (300)
T COG1023 81 APLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL 116 (300)
T ss_pred HhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEE
Confidence 544222 24442333444566665555555555543
No 381
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=92.47 E-value=0.83 Score=43.90 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=55.8
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeE---EcCccccc-c-------HHHHhhccCCcEEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE---HLGLPVFN-S-------VAEAKAETKANASVI 121 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~e---i~GvPVy~-s-------l~e~~~~~~~DVaId 121 (181)
-+.++++|+|.|++|-.|+.+++.+.+. |.+|++.......-.. ..++..+. + ++++++ ++|++|-
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~--~~D~ViH 388 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIK--KCDVVLP 388 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhc--CCCEEEE
Confidence 4556789999999999999999999985 7998865322110000 01233221 3 233444 7998885
Q ss_pred ee----Ch--------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 122 YV----PP--------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 122 fV----Pp--------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
+. |. .....+++.|.++| +.+|.+++
T Consensus 389 lAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS 432 (660)
T PRK08125 389 LVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPST 432 (660)
T ss_pred CccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcc
Confidence 32 21 22345677777888 55554454
No 382
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.43 E-value=0.53 Score=38.81 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=53.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|.+|+.+++.+.+.|.+++. ++.+... . -...+++.+..++. +..|...++.+.+.++++.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~-~~r~~~~--~-----~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVI-SSRNEEN--L-----EKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEE-EeCCHHH--H-----HHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999999998663 3433211 0 01112221111222 34567778888888888776
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 73 ~~g~id~li~-naG~ 86 (259)
T PRK08340 73 LLGGIDALVW-NAGN 86 (259)
T ss_pred hcCCCCEEEE-CCCC
Confidence 4 5777777 6665
No 383
>PRK09242 tropinone reductase; Provisional
Probab=92.43 E-value=1 Score=36.85 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-CCc---EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~D---VaIdfVPp~~a~~~~~ 133 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++..... .....+++.+.. +.+ +.+|...++...+.++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~~-~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGADVLI-VARDADA-------LAQARDELAEEFPEREVHGLAADVSDDEDRRAILD 80 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EeCCHHH-------HHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHH
Confidence 457999999999999999999999999764 3332211 011112221110 112 2456777888888887
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..++. ..|.
T Consensus 81 ~~~~~~g~id~li~-~ag~ 98 (257)
T PRK09242 81 WVEDHWDGLHILVN-NAGG 98 (257)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77654 6788877 6664
No 384
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.40 E-value=0.55 Score=43.97 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=28.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
+..+|+|+|+ |+.|+..++.+.+.|.+||+.-|
T Consensus 227 ~g~rVaVQGf-GNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 227 KGKVCLVSGS-GNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence 3478999999 99999999999999999996433
No 385
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=92.35 E-value=0.85 Score=38.89 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=56.3
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe------------EE----cCccccccHHHHhhccCCcE
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT------------EH----LGLPVFNSVAEAKAETKANA 118 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~------------ei----~GvPVy~sl~e~~~~~~~DV 118 (181)
+..++|+|.|++|-.|+.+++.+.+.|.++++ ..++..... .+ .++.-..+++++++ ++|+
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~ 80 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID--GCET 80 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc--CCCE
Confidence 44578999999999999999999999999765 345432110 00 12222224566665 6898
Q ss_pred EEEeeCh----------HH--------HHHHHHHHHHc-CCCEEEEeCC
Q 030220 119 SVIYVPP----------PF--------AAAAIMEAMEA-ELDLVVCITE 148 (181)
Q Consensus 119 aIdfVPp----------~~--------a~~~~~eaie~-GIk~IV~iTt 148 (181)
+|-+... .. ...+++.|.+. +++.||.+++
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS 129 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSS 129 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 8877631 11 23445555554 5666776564
No 386
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.35 E-value=0.49 Score=38.87 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|-.|+.+++.+.+.|.+++. ++..... .. .....+.+. ..+++ +-.|...++...+.++++.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~-~~r~~~~--~~--~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVL-SARKAEE--LE--EAAAHLEAL--GIDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEE-EeCCHHH--HH--HHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 467999999999999999999999998663 3432211 10 011111110 00121 4557778888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..++. ..|.
T Consensus 85 ~~~~~id~vi~-~ag~ 99 (259)
T PRK08213 85 ERFGHVDILVN-NAGA 99 (259)
T ss_pred HHhCCCCEEEE-CCCC
Confidence 64 6888887 5553
No 387
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.35 E-value=0.22 Score=43.63 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=67.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
...+++|-|||+..|.+.++.+.+.|++++ .|.+...- + ..++..+++.- ..+++ +.+|.+-++.+..+.++.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~li-LvaR~~~k--L--~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l 78 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLI-LVARREDK--L--EALAKELEDKT-GVEVEVIPADLSDPEALERLEDEL 78 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCcHHH--H--HHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHH
Confidence 346799999999999999999999999987 66665521 2 12333333321 12343 467888899999999999
Q ss_pred HHc--CCCEEEEeCCCC------CHHHHHHHHHH
Q 030220 136 MEA--ELDLVVCITEGI------PQHDMVINFTR 161 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~------~~ed~~~l~~~ 161 (181)
.+. .|...|+ -.|| .+.+..+++++
T Consensus 79 ~~~~~~IdvLVN-NAG~g~~g~f~~~~~~~~~~m 111 (265)
T COG0300 79 KERGGPIDVLVN-NAGFGTFGPFLELSLDEEEEM 111 (265)
T ss_pred HhcCCcccEEEE-CCCcCCccchhhCChHHHHHH
Confidence 888 6777887 5554 44444444444
No 388
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.33 E-value=0.9 Score=37.53 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=53.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc--cCCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~--~~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+|+. ++.... .++++.+. .++. +-.|...++...+.+++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r~~~-----------~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAV-LDKSAA-----------GLQELEAAHGDAVVGVEGDVRSLDDHKEAVAR 72 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHhhcCCceEEEEeccCCHHHHHHHHHH
Confidence 467999999999999999999999999774 443221 11221111 1222 33566777888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..+|+ ..|+
T Consensus 73 ~~~~~g~id~li~-~Ag~ 89 (262)
T TIGR03325 73 CVAAFGKIDCLIP-NAGI 89 (262)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 7764 5777887 6564
No 389
>PRK07069 short chain dehydrogenase; Validated
Probab=92.32 E-value=2.1 Score=34.58 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=52.6
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC---C-cEEEEeeChHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK---A-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~---~-DVaIdfVPp~~a~~~~~ea 135 (181)
+|+|.|++|.+|+.+++.+.+.|.+++. ++..... .... . .+++.+... + .+..|...++...+.++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~-~~r~~~~-~~~~--~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFL-TDINDAA-GLDA--F---AAEINAAHGEGVAFAAVQDVTDEAQWQALLAQA 73 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCcch-HHHH--H---HHHHHhcCCCceEEEEEeecCCHHHHHHHHHHH
Confidence 4899999999999999999999999763 3332111 1110 1 111111111 1 2445788888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..++. ..|+
T Consensus 74 ~~~~~~id~vi~-~ag~ 89 (251)
T PRK07069 74 ADAMGGLSVLVN-NAGV 89 (251)
T ss_pred HHHcCCccEEEE-CCCc
Confidence 763 5777777 5554
No 390
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.31 E-value=1.9 Score=35.29 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC--Cc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~--~D-VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|..|+.+++.+.+.|.+|+. ++.... +.. .+.+.+++.+ ++ +..|...++...+.++.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~-~~r~~~--~~~------~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVIL-NGRDPA--KLA------AAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEE-EeCCHH--HHH------HHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 467999999999999999999999999774 443321 110 1111112111 22 33477888888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..++. ..|.
T Consensus 81 ~~~~~~~~d~li~-~ag~ 97 (255)
T PRK07523 81 FEAEIGPIDILVN-NAGM 97 (255)
T ss_pred HHHhcCCCCEEEE-CCCC
Confidence 7654 4667776 5554
No 391
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.31 E-value=2.7 Score=34.22 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=61.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC-eEEcCccccc-------cHHHHhhccCCcEEEEeeC-----
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-TEHLGLPVFN-------SVAEAKAETKANASVIYVP----- 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G-~ei~GvPVy~-------sl~e~~~~~~~DVaIdfVP----- 124 (181)
++|+|.|+||..|+.+++.+.+.|.++++.+. |++.. .. .++.+.. ++....+ +.|..++.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~--G~~~~~~i~~~~~~~ 77 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAK--GVDGVLLISGLLDGS 77 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhc--cccEEEEEecccccc
Confidence 46999999999999999999999999887643 22211 01 2232222 3444444 7887777777
Q ss_pred ----hHHHHHHHHHHHHcC--CCEEEEeC----CCCCHHHHHHHHHHhhhhchhc
Q 030220 125 ----PPFAAAAIMEAMEAE--LDLVVCIT----EGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 125 ----p~~a~~~~~eaie~G--Ik~IV~iT----tG~~~ed~~~l~~~ak~ipv~~ 169 (181)
......++..+..++ ++.++-.+ ..-+.....+-...++++-.++
T Consensus 78 ~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~s 132 (275)
T COG0702 78 DAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSS 132 (275)
T ss_pred cchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhc
Confidence 122233333344433 55544322 2245555555555555444433
No 392
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.23 E-value=0.74 Score=38.35 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=26.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
+|+|.|++|-.|+.+++.+.+.|.++++.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~ 30 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGL 30 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEE
Confidence 49999999999999999999999998853
No 393
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.20 E-value=0.55 Score=38.94 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=70.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE------cCccccc-cHH-HHhhccCCcEEEEeeChHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFN-SVA-EAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei------~GvPVy~-sl~-e~~~~~~~DVaIdfVPp~~a 128 (181)
+..+|+|+|+ |++|...++.+.+.|.+|+ .|+|.... ++ ..+..-. .+. +-+. ++|++|..+.....
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~-VIs~~~~~-~l~~l~~~~~i~~~~~~~~~~~l~--~adlViaaT~d~el 83 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIV-VISPELTE-NLVKLVEEGKIRWKQKEFEPSDIV--DAFLVIAATNDPRV 83 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEcCCCCH-HHHHHHhCCCEEEEecCCChhhcC--CceEEEEcCCCHHH
Confidence 4578999999 9999999999999988766 56776432 11 1121111 121 2233 68999999888777
Q ss_pred HHHHHHHHHcCCCEE----------------------EEe-CCCCCHHHHHHHHHHhhh-hchhchhhhh
Q 030220 129 AAAIMEAMEAELDLV----------------------VCI-TEGIPQHDMVINFTRVNI-LLVAFLNFIM 174 (181)
Q Consensus 129 ~~~~~eaie~GIk~I----------------------V~i-TtG~~~ed~~~l~~~ak~-ipv~~~~~~~ 174 (181)
...+....+.++..- +.+ |.|-+..-..+|.+.-+. .|=..+.|+-
T Consensus 84 N~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~~~~~ 153 (202)
T PRK06718 84 NEQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYDESYESYID 153 (202)
T ss_pred HHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcchhHHHHHH
Confidence 666665556665321 112 467677666666665544 4555555543
No 394
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=92.19 E-value=0.83 Score=39.64 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC--CeEeeec-CCCCCC---eEE--cCcccc-------ccHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVGGV-TPKKGG---TEH--LGLPVF-------NSVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g--~~IVagV-dP~~~G---~ei--~GvPVy-------~sl~e~~~~~~~DVaIdf 122 (181)
.++|+|.|++|-.|+.+++.+.+.| .+|++.. ++.... .+. .++.++ .++.++++ ++|++|-+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~--~iD~Vih~ 81 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR--GVDYVVHA 81 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh--cCCEEEEC
Confidence 4679999999999999999988864 5666432 221100 000 112222 24555555 68988875
Q ss_pred eCh------------------HHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 123 VPP------------------PFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 123 VPp------------------~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
.-. .....+++.|.+.|++.+|.+++.
T Consensus 82 Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~ 126 (324)
T TIGR03589 82 AALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD 126 (324)
T ss_pred cccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 321 135567778888899888876753
No 395
>PRK09291 short chain dehydrogenase; Provisional
Probab=92.17 E-value=1 Score=36.64 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=27.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeec
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV 89 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagV 89 (181)
.+|+|.|++|..|+.+++.+.+.|.++++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGV 33 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4699999999999999999999999988643
No 396
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.17 E-value=1.7 Score=37.83 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=69.9
Q ss_pred CceEEEEccC--CCCcchhhHHHHHhCCeEeeecCCCCC-Ce-----------EEcCccccccHHHHhhccCCcEEEEee
Q 030220 58 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKG-GT-----------EHLGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 58 ~~rViVvGat--GkmG~~~~k~~~~~g~~IVagVdP~~~-G~-----------ei~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
+.+|+++.-. ||.|. +++.|+++|++-...|+|... .. -+.+-.||++++|++. ++|.++=++
T Consensus 4 ~i~iVLVep~~~gNIG~-vARaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~--d~~~v~aTt 80 (242)
T COG0565 4 NIRIVLVEPSHPGNIGS-VARAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALA--DCDLVVATT 80 (242)
T ss_pred ccEEEEEcCCCCccHHH-HHHHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhc--CCCEEEEec
Confidence 4567777654 77775 678899999996668898874 11 1357899999999998 889888765
Q ss_pred --------ChHHHHHHHHHHHHc--CCCEEEEeC---CCCCHHHHHHHHHHhhhhch
Q 030220 124 --------PPPFAAAAIMEAMEA--ELDLVVCIT---EGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 124 --------Pp~~a~~~~~eaie~--GIk~IV~iT---tG~~~ed~~~l~~~ak~ipv 167 (181)
|+..=.+...++.+. |=+..+.|. .|++-|++.+-... -.||.
T Consensus 81 ar~r~~~~~~~~P~e~~~~l~~~~~~~~vAlvFGRE~~GLtNeEl~~c~~~-v~IP~ 136 (242)
T COG0565 81 ARSRDLLRPLRTPREAAPELLEKAKGGKVALVFGRERVGLTNEELALCDVL-VTIPA 136 (242)
T ss_pred cccCcccccccCHHHHHHHHHHHhcCCCeEEEECCccCCCCHHHHHhhhEE-EecCC
Confidence 111222333333322 455555566 89999988764433 34553
No 397
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.16 E-value=0.25 Score=39.84 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=41.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE----E---cCc-----cccc--cHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----H---LGL-----PVFN--SVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e----i---~Gv-----PVy~--sl~e~~~~~~~DVaIdf 122 (181)
..+++|+|++|.+|+...+.+.+.|.+++ .++++... ++ + .+. ..++ ++.+.++ ++|++|-+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~diVi~a 104 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK--GADVVFAA 104 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh--cCCEEEEC
Confidence 46899999999999999999888887765 33433210 00 0 011 1121 2334444 68888888
Q ss_pred eChHH
Q 030220 123 VPPPF 127 (181)
Q Consensus 123 VPp~~ 127 (181)
+|...
T Consensus 105 t~~g~ 109 (194)
T cd01078 105 GAAGV 109 (194)
T ss_pred CCCCc
Confidence 87665
No 398
>PRK12742 oxidoreductase; Provisional
Probab=92.13 E-value=1.4 Score=35.45 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=27.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
..+|+|.|++|..|+.+++.+.+.|.+++..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 3579999999999999999999999997743
No 399
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.08 E-value=1.8 Score=31.52 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=55.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEE---eeChHHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVI---YVPPPFAAAAIMEAM 136 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaId---fVPp~~a~~~~~eai 136 (181)
+|+|+|.-..+-...-+.+.++|++.+.- .+.. +.+ +--..+++.+. ++|++|+ ++.......+-++|-
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~-~~~----~~~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH-GRDG-GDE----KKASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCC-CCc----cchhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHHH
Confidence 58999953355556666677789997644 2211 200 11112555555 7898766 467888999999999
Q ss_pred HcCCCEEEEeCCCCC
Q 030220 137 EAELDLVVCITEGIP 151 (181)
Q Consensus 137 e~GIk~IV~iTtG~~ 151 (181)
+.|+|.+.+=+.|.+
T Consensus 73 k~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 73 KYGIPIIYSRSRGVS 87 (97)
T ss_pred HcCCcEEEECCCCHH
Confidence 999999987445554
No 400
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.08 E-value=0.55 Score=42.24 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 92 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~ 92 (181)
++.+|+|+|+ |-.|+.+++.+...|..-+..+|+.
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4578999999 9999999999999888745466665
No 401
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.06 E-value=1.8 Score=35.51 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|..|+.+++.+.+.|.+++. ++.....+ .+.+...+. ++. +..|...++.+.+++++
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 84 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIII-TTHGTNWD---------ETRRLIEKEGRKVTFVQVDLTKPESAEKVVKE 84 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCcHHH---------HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 467999999999999999999999998763 33221110 112222111 122 34566778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 85 ~~~~~g~id~li~-~ag~ 101 (258)
T PRK06935 85 ALEEFGKIDILVN-NAGT 101 (258)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8765 5788887 5554
No 402
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.05 E-value=1.2 Score=35.92 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=49.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCcE-EEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKANA-SVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~DV-aIdfVPp~~a~~~~~ea 135 (181)
.++|+|.|++|..|+.+++.+.+.|.+|++ ++..... . + ...+++... .++++ ..|...++.+.+.++++
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~-~~r~~~~--~---~--~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIV-VDICGDD--A---A--ATAELVEAAGGKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEE-EeCCHHH--H---H--HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 357999999999999999999999998774 3332210 0 0 111111111 01221 23556677777777766
Q ss_pred HHc--CCCEEEEeC
Q 030220 136 MEA--ELDLVVCIT 147 (181)
Q Consensus 136 ie~--GIk~IV~iT 147 (181)
.+. .+..|++.+
T Consensus 78 ~~~~~~~d~vi~~a 91 (251)
T PRK12826 78 VEDFGRLDILVANA 91 (251)
T ss_pred HHHhCCCCEEEECC
Confidence 543 577777744
No 403
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=92.04 E-value=0.66 Score=42.74 Aligned_cols=83 Identities=8% Similarity=0.144 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-c--CCCCCCeEEcC-cccc--cc---HHHHhhccCCcEEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-V--TPKKGGTEHLG-LPVF--NS---VAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-V--dP~~~G~ei~G-vPVy--~s---l~e~~~~~~~DVaIdfVPp~~a 128 (181)
++||+|+|. |.-.+.++..+.+.|.++.+. . ||.. ..+.. .-.+ .+ +.++.+++++|.+|...-...+
T Consensus 2 ~~kVLvlG~-G~re~al~~~l~~~g~~v~~~~~~~Npg~--~~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l~ 78 (435)
T PRK06395 2 TMKVMLVGS-GGREDAIARAIKRSGAILFSVIGHENPSI--KKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPVLA 78 (435)
T ss_pred ceEEEEECC-cHHHHHHHHHHHhCCCeEEEEECCCChhh--hhcccceeecCCCCHHHHHHHHHHhCCCEEEECCChHHH
Confidence 478999998 766677887788888876654 3 3332 01111 1112 13 4445566789999988777778
Q ss_pred HHHHHHHHHcCCCEE
Q 030220 129 AAAIMEAMEAELDLV 143 (181)
Q Consensus 129 ~~~~~eaie~GIk~I 143 (181)
...++++.+.|++.+
T Consensus 79 ~~~~~~l~~~Gi~v~ 93 (435)
T PRK06395 79 TPLVNNLLKRGIKVA 93 (435)
T ss_pred HHHHHHHHHCCCcEE
Confidence 888888889998754
No 404
>PRK09134 short chain dehydrogenase; Provisional
Probab=92.01 E-value=1.7 Score=35.69 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|++|-+|+.+++.+.+.|.+++......... .. .+...+.+. ..+++ +..|...++...++++++.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~--~~--~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~ 82 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDE--AE--ALAAEIRAL--GRRAVALQADLADEAEVRALVARAS 82 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHH--HH--HHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999887544432211 00 111111110 11222 3346677788888777776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|. ..|+
T Consensus 83 ~~~~~iD~vi~-~ag~ 97 (258)
T PRK09134 83 AALGPITLLVN-NASL 97 (258)
T ss_pred HHcCCCCEEEE-CCcC
Confidence 53 5777877 5554
No 405
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.00 E-value=2.1 Score=35.26 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc---CC-cEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KA-NASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~---~~-DVaIdfVPp~~a~~~~~ 133 (181)
...++|.|++|.+|+.+++.+.+.|.+++ .++..... .. .. .+++.+.. ++ -+..|...++.+.+.++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~-~~~r~~~~--~~--~~---~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVA-ICGRDEER--LA--SA---EARLREKFPGARLLAARCDVLDEADVAAFAA 79 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeCCHHH--HH--HH---HHHHHhhCCCceEEEEEecCCCHHHHHHHHH
Confidence 35689999999999999999999999976 34443211 10 01 12222111 11 24568888999999988
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 80 ~~~~~~g~id~li~-~Ag~ 97 (265)
T PRK07062 80 AVEARFGGVDMLVN-NAGQ 97 (265)
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 88764 5788887 6665
No 406
>PRK06181 short chain dehydrogenase; Provisional
Probab=91.96 E-value=1.9 Score=35.31 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=52.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|..|+.+++.+.+.|.+++.. +..... .. .....+.+.. .++. +..|...++...++++++.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~-~r~~~~--~~--~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLA-ARNETR--LA--SLAQELADHG--GEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEE-eCCHHH--HH--HHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 468999999999999999999989887743 332210 00 1111111110 0121 23466777788888887765
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..||. ..|.
T Consensus 75 ~~~~id~vi~-~ag~ 88 (263)
T PRK06181 75 RFGGIDILVN-NAGI 88 (263)
T ss_pred HcCCCCEEEE-CCCc
Confidence 4 6888887 5554
No 407
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.96 E-value=0.74 Score=37.23 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=51.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ea 135 (181)
.+++|.|++|..|+.+++.+.+.|.+|+. ++..... .. .. .++. +.. ++. +..|...++...++++++
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~-~~r~~~~--~~--~~---~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGL-LARTEEN--LK--AV---AEEV-EAYGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--HH--HH---HHHH-HHhCCeEEEEECCCCCHHHHHHHHHHH
Confidence 56999999999999999999999998775 4432211 00 01 1111 111 121 344566777777777776
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+++ +.|.
T Consensus 79 ~~~~~~id~vi~-~ag~ 94 (239)
T PRK07666 79 KNELGSIDILIN-NAGI 94 (239)
T ss_pred HHHcCCccEEEE-cCcc
Confidence 654 7888887 5554
No 408
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.95 E-value=1.6 Score=35.31 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=50.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+++|.|++|.+|+.+++.+.+.|.+++....+.... .....+++... .++. +..|...++.+...+++..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKA-------AEETAEEIEALGRKALAVKANVGDVEKIKEMFAQID 77 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-------HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999877543332210 11111221110 0121 3356667777777777665
Q ss_pred Hc--CCCEEEEeC
Q 030220 137 EA--ELDLVVCIT 147 (181)
Q Consensus 137 e~--GIk~IV~iT 147 (181)
+. ++..+++.+
T Consensus 78 ~~~~~id~vi~~a 90 (250)
T PRK08063 78 EEFGRLDVFVNNA 90 (250)
T ss_pred HHcCCCCEEEECC
Confidence 54 577787744
No 409
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=91.94 E-value=1.1 Score=36.27 Aligned_cols=84 Identities=17% Similarity=0.053 Sum_probs=51.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
++|+|.|++|.+|+.+++.+.+.|.+++....++... . -.+...+++.. .++ -+-.|...++...++++++.+
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~--~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAA--A--EETADAVRAAG--GRACVVAGDVANEADVIAMFDAVQS 76 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHH--H--HHHHHHHHhcC--CcEEEEEeccCCHHHHHHHHHHHHH
Confidence 4699999999999999999999999876543332211 0 01222222110 012 233566677778888877765
Q ss_pred c--CCCEEEEeCCC
Q 030220 138 A--ELDLVVCITEG 149 (181)
Q Consensus 138 ~--GIk~IV~iTtG 149 (181)
. .+..+|+ ..|
T Consensus 77 ~~~~id~li~-~ag 89 (248)
T PRK06947 77 AFGRLDALVN-NAG 89 (248)
T ss_pred hcCCCCEEEE-CCc
Confidence 4 5777777 444
No 410
>PRK08265 short chain dehydrogenase; Provisional
Probab=91.90 E-value=2.5 Score=35.00 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=52.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+++. ++.+... ++++.++. ++ -+..|...++...+.+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~-----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAI-VDIDADN-----------GAAVAASLGERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCHHH-----------HHHHHHHhCCeeEEEEecCCCHHHHHHHHHH
Confidence 357999999999999999999999998763 3432210 11111111 12 134577788888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..+|+ ..|.
T Consensus 74 ~~~~~g~id~lv~-~ag~ 90 (261)
T PRK08265 74 VVARFGRVDILVN-LACT 90 (261)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 7664 5777777 5553
No 411
>PRK14851 hypothetical protein; Provisional
Probab=91.90 E-value=0.65 Score=45.58 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=25.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP 91 (181)
+.+|+|+|+ |-.|+.+++.+...|..-+-.+|+
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcC
Confidence 478999999 999999999998887653333443
No 412
>PRK08226 short chain dehydrogenase; Provisional
Probab=91.88 E-value=2.1 Score=35.11 Aligned_cols=83 Identities=17% Similarity=0.126 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh-ccCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~-~~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|.+|+.+++.+.+.|.+++ .++..... .. ..++... ..+++ +..|...++.+.+.++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv-~~~r~~~~-----~~---~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 76 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGANLI-LLDISPEI-----EK---LADELCGRGHRCTAVVADVRDPASVAAAIKRA 76 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE-EecCCHHH-----HH---HHHHHHHhCCceEEEECCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999866 45543210 01 1122111 11222 345777788888888877
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. .+..++. ..|+
T Consensus 77 ~~~~~~id~vi~-~ag~ 92 (263)
T PRK08226 77 KEKEGRIDILVN-NAGV 92 (263)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 764 5777777 6564
No 413
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=91.87 E-value=0.98 Score=37.89 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=50.2
Q ss_pred EEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCCCeEE---cCccccc------cHHHHhhc--cCCcEEEEeeCh---
Q 030220 61 VICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEH---LGLPVFN------SVAEAKAE--TKANASVIYVPP--- 125 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~G~ei---~GvPVy~------sl~e~~~~--~~~DVaIdfVPp--- 125 (181)
|+|.|++|-+|+.+++.+.+.|. +++ +++.......+ .+..+.. .++.+.++ .++|++|-+...
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~ 79 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDIL-VVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDT 79 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEE-EEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccCc
Confidence 57999999999999999999887 455 44422211111 1111222 23333221 479999877632
Q ss_pred -------------HHHHHHHHHHHHcCCCEEEE
Q 030220 126 -------------PFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 126 -------------~~a~~~~~eaie~GIk~IV~ 145 (181)
..+..+++.|.+++++.|..
T Consensus 80 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 112 (314)
T TIGR02197 80 TETDGEYMMENNYQYSKRLLDWCAEKGIPFIYA 112 (314)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 23455677788889875544
No 414
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=91.83 E-value=2.7 Score=33.76 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=51.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc--cCCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~--~~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|..|+.+++.+.+.|..++. .+.... .+++...+ .++. +..|....+.+.+.+++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~-~~~~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGL-HGTRVE-----------KLEALAAELGERVKIFPANLSDRDEVKALGQK 73 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE-EcCCHH-----------HHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence 467999999999999999999998886553 332211 11111111 1222 34567778888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 74 ~~~~~~~id~vi~-~ag~ 90 (245)
T PRK12936 74 AEADLEGVDILVN-NAGI 90 (245)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7764 5788887 5554
No 415
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.61 E-value=1.8 Score=37.87 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=55.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|-+|+.+++.+.+.|.+++. ++.+... .. .+ .+++ ++...+ +..|...++.+.+++++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl-~~R~~~~--l~--~~---~~~l-~~~g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVL-LARGEEG--LE--AL---AAEI-RAAGGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HH---HHHH-HHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 356999999999999999999999999764 3433211 10 01 1122 111222 34688889999999888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 79 ~~~~~g~iD~lIn-nAg~ 95 (334)
T PRK07109 79 AEEELGPIDTWVN-NAMV 95 (334)
T ss_pred HHHHCCCCCEEEE-CCCc
Confidence 8765 6888887 6664
No 416
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.57 E-value=1 Score=42.34 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=58.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccc------------c-ccHHHHhh------------
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPV------------F-NSVAEAKA------------ 112 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPV------------y-~sl~e~~~------------ 112 (181)
..+|+|+|+ |+.|+..++.+.+.|.++|+.-|....=-.-.|+.+ . .+++++.+
T Consensus 237 Gk~VaVqG~-GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~ 315 (454)
T PTZ00079 237 GKTVVVSGS-GNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKK 315 (454)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcC
Confidence 468999999 999999999999999999975443310000012211 0 11222211
Q ss_pred --ccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 113 --ETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 113 --~~~~DVaIdfVPp-~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
..+|||++=+--. .--.+.++.+++.|.+.|+.-+-+-...+..++.
T Consensus 316 ~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L 365 (454)
T PTZ00079 316 PWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF 365 (454)
T ss_pred cccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 2467777654322 2233566677788999999834333333333333
No 417
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=91.56 E-value=1.2 Score=42.58 Aligned_cols=90 Identities=7% Similarity=0.029 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCC-CC--e------EEcCccc-------cccHHHHhhccCCcEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKK-GG--T------EHLGLPV-------FNSVAEAKAETKANAS 119 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~-~G--~------ei~GvPV-------y~sl~e~~~~~~~DVa 119 (181)
.++|+|.|+||-.|+.+++.+.+. +.+|++. |... .. . ...++.. ...+.++....++|++
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~-d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVL-DKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE-eCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 468999999999999999988885 6787753 3210 00 0 0012221 1134444433479998
Q ss_pred EEeeChH------------------HHHHHHHHHHHcC-CCEEEEeCC
Q 030220 120 VIYVPPP------------------FAAAAIMEAMEAE-LDLVVCITE 148 (181)
Q Consensus 120 IdfVPp~------------------~a~~~~~eaie~G-Ik~IV~iTt 148 (181)
|-+.... ....+++.|.+.| ++.+|.+++
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS 132 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST 132 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 8665321 1234556666667 777776564
No 418
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.54 E-value=1 Score=39.82 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=57.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCCC---CCeEE--------cC----ccccccHHHHhhccCCcEEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKK---GGTEH--------LG----LPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~~---~G~ei--------~G----vPVy~sl~e~~~~~~~DVaI 120 (181)
+..||+|+|+ |.+|+.+...+...| .+ +..+|... .|... .+ +..+.+.+ ..+ ++|++|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~--~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIK--DSDVVV 78 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhC--CCCEEE
Confidence 3468999999 999998887777767 45 33455332 12111 11 22334566 345 799999
Q ss_pred Eee--Ch--------------HHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 121 IYV--PP--------------PFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 121 dfV--Pp--------------~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
++. |. ....+.++...+.+-+.++++.+.
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 998 22 557788888888888885555554
No 419
>PRK08324 short chain dehydrogenase; Validated
Probab=91.54 E-value=1.4 Score=42.59 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.+|+. ++..... .. . ..+++-...++ -+..|.+.++.+.++++++.
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl-~~r~~~~--~~--~---~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVVL-ADLDEEA--AE--A---AAAELGGPDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEE-EeCCHHH--HH--H---HHHHHhccCcEEEEEecCCCHHHHHHHHHHHH
Confidence 367899999999999999999999998763 3432211 00 0 01111110122 34557778888888888776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..||. ..|+
T Consensus 494 ~~~g~iDvvI~-~AG~ 508 (681)
T PRK08324 494 LAFGGVDIVVS-NAGI 508 (681)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 55 6888888 6663
No 420
>PRK07677 short chain dehydrogenase; Provisional
Probab=91.54 E-value=1.8 Score=35.45 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=51.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|.+|+.+++.+.+.|.+|+. ++.+.. .. ..+.+.+++. +++ +-.|.+.++.+.++++++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~-~~r~~~--~~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVI-TGRTKE--KL------EEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEE-EeCCHH--HH------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 46899999999999999999999998764 333221 01 0111111111 122 334677888888888887
Q ss_pred HHc--CCCEEEEeCCC
Q 030220 136 MEA--ELDLVVCITEG 149 (181)
Q Consensus 136 ie~--GIk~IV~iTtG 149 (181)
.+. ++..+|+ ..|
T Consensus 73 ~~~~~~id~lI~-~ag 87 (252)
T PRK07677 73 DEKFGRIDALIN-NAA 87 (252)
T ss_pred HHHhCCccEEEE-CCC
Confidence 764 5778887 444
No 421
>PRK08264 short chain dehydrogenase; Validated
Probab=91.53 E-value=1.7 Score=35.05 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC-eEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVG 87 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~-~IVa 87 (181)
..+|+|.|++|..|+.+++.+.+.|. +++.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~ 36 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYA 36 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEE
Confidence 45799999999999999999999998 6553
No 422
>PRK06482 short chain dehydrogenase; Provisional
Probab=91.51 E-value=2.5 Score=35.04 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=51.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|.+|+.+++.+.+.|.++++. +.... .++++.+.. ++. +..|...++...+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~-~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAAT-VRRPD-----------ALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRA 70 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCCHH-----------HHHHHHHhccCceEEEEccCCCHHHHHHHHHHH
Confidence 469999999999999999999989887643 22210 112221111 222 346777788788887777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..|+. ..|.
T Consensus 71 ~~~~~~id~vi~-~ag~ 86 (276)
T PRK06482 71 FAALGRIDVVVS-NAGY 86 (276)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 654 5777777 5554
No 423
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.51 E-value=1 Score=36.88 Aligned_cols=86 Identities=17% Similarity=0.097 Sum_probs=53.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|.+|+.+++.+.+.|.+++. ++..... .. .+.+.+.+.....++ -+-.|...++.+..+++++.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~-~~r~~~~--~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAV-ADINSEK--AA--NVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999998764 4433211 10 111111111000112 244577788888888888766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|. ..|.
T Consensus 78 ~~~~id~vv~-~ag~ 91 (259)
T PRK12384 78 IFGRVDLLVY-NAGI 91 (259)
T ss_pred HcCCCCEEEE-CCCc
Confidence 4 6777887 5554
No 424
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=91.50 E-value=1 Score=37.28 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=52.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC---cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~---DVaIdfVPp~~a~~~~~e 134 (181)
.++++|.|+++..|+.+++.+.+.|.+++....+... ... ...+++...... -+.+|++.++.+.+.+++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVE--EAN-----KIAEDLEQKYGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH--HHH-----HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 3568899999999999999999999997743232211 110 011111111111 234577888888888888
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
..+. ++..+|+ ..|
T Consensus 81 ~~~~~g~id~lv~-nAg 96 (260)
T PRK08416 81 IDEDFDRVDFFIS-NAI 96 (260)
T ss_pred HHHhcCCccEEEE-Ccc
Confidence 7764 5777776 444
No 425
>PRK06128 oxidoreductase; Provisional
Probab=91.50 E-value=2.8 Score=35.66 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=52.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC--Cc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~--~D-VaIdfVPp~~a~~~~~ea 135 (181)
++|+|.|++|-+|+.+++.+.+.|.+++....+.. ... . ..+.+.++... +. +-.|...++.+.++++++
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~-~~~-----~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 128 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEE-EQD-----A-AEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERA 128 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcc-hHH-----H-HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999764311111 000 0 11122222111 21 234677788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 129 ~~~~g~iD~lV~-nAg~ 144 (300)
T PRK06128 129 VKELGGLDILVN-IAGK 144 (300)
T ss_pred HHHhCCCCEEEE-CCcc
Confidence 764 6888887 5554
No 426
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.47 E-value=0.4 Score=41.20 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=53.1
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE-cCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+..+|+|+|+ |-+|....+..+..|.+.|..++......+. ....+++.-++ ....+|++++++......+.+.++
T Consensus 144 ~~~~vlV~G~-G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G~~~~~~~~~~~ 220 (308)
T TIGR01202 144 KVLPDLIVGH-GTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASGDPSLIDTLVRR 220 (308)
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCCCHHHHHHHHHh
Confidence 3456999997 9999999998888999866566544321111 11223332221 223689999999987665666666
Q ss_pred HHcCCCEE
Q 030220 136 MEAELDLV 143 (181)
Q Consensus 136 ie~GIk~I 143 (181)
+..|=+.+
T Consensus 221 l~~~G~iv 228 (308)
T TIGR01202 221 LAKGGEIV 228 (308)
T ss_pred hhcCcEEE
Confidence 66654444
No 427
>PLN02686 cinnamoyl-CoA reductase
Probab=91.45 E-value=1 Score=39.91 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=28.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
.++|+|.|++|-+|+.+++.+.+.|.+|++.++
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 467999999999999999999999999876543
No 428
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.44 E-value=1.2 Score=36.24 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+++ .++..... .. .. .+++ ++. ++. +..|...++...+.+++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~-~~~r~~~~--~~--~~---~~~~-~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVV-VADRDAAG--GE--ET---VALI-REAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEeCCHHH--HH--HH---HHHH-HhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999999999999866 44443211 11 11 1221 111 222 34667778878887777
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..+|+ ..|+
T Consensus 78 ~~~~~g~id~li~-~ag~ 94 (253)
T PRK06172 78 TIAAYGRLDYAFN-NAGI 94 (253)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 7654 5777877 5554
No 429
>PRK14852 hypothetical protein; Provisional
Probab=91.43 E-value=0.7 Score=47.25 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=26.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 92 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~ 92 (181)
+.+|+|+|+ |-.|..+++.+...|..-+..+|..
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 478999999 9999999999988887644444443
No 430
>PRK08263 short chain dehydrogenase; Provisional
Probab=91.43 E-value=2.7 Score=35.04 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=50.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~ea 135 (181)
.+|+|.|++|.+|+.+++.+.+.|.+++. ++.... . ++++.+.. ++ -+-.|+..++...+.++.+
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~-~~r~~~--~---------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVA-TARDTA--T---------LADLAEKYGDRLLPLALDVTDRAAVFAAVETA 71 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEE-EECCHH--H---------HHHHHHhccCCeeEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999988988664 332211 0 11111110 11 1345677788888877776
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|. ..|.
T Consensus 72 ~~~~~~~d~vi~-~ag~ 87 (275)
T PRK08263 72 VEHFGRLDIVVN-NAGY 87 (275)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 653 6777777 6664
No 431
>PRK07063 short chain dehydrogenase; Provisional
Probab=91.39 E-value=1.8 Score=35.49 Aligned_cols=84 Identities=18% Similarity=0.119 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh---ccCCc-EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA---ETKAN-ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~---~~~~D-VaIdfVPp~~a~~~~~ 133 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++.+... . -...+++.+ ..++. +..|...++.+.+.++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~-~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVAL-ADLDAAL--A-----ERAAAAIARDVAGARVLAVPADVTDAASVAAAVA 78 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--H-----HHHHHHHHhccCCceEEEEEccCCCHHHHHHHHH
Confidence 356999999999999999999999999764 3432211 0 001112111 01122 3456777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~g~id~li~-~ag~ 96 (260)
T PRK07063 79 AAEEAFGPLDVLVN-NAGI 96 (260)
T ss_pred HHHHHhCCCcEEEE-CCCc
Confidence 87765 5777887 5664
No 432
>PRK07024 short chain dehydrogenase; Provisional
Probab=91.37 E-value=1.4 Score=36.19 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=52.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|-+|+.+++.+.+.|.+++. ++.+... .. ...+++....+++ +.+|.+.++.+.+.+++..+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~-~~r~~~~--~~-----~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 74 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGL-VARRTDA--LQ-----AFAARLPKAARVSVYAADVRDADALAAAAADFIA 74 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEE-EeCCHHH--HH-----HHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998998764 3432210 10 0011111100222 44677888888888888765
Q ss_pred c-C-CCEEEEeCCCC
Q 030220 138 A-E-LDLVVCITEGI 150 (181)
Q Consensus 138 ~-G-Ik~IV~iTtG~ 150 (181)
. | +..+|+ ..|+
T Consensus 75 ~~g~id~lv~-~ag~ 88 (257)
T PRK07024 75 AHGLPDVVIA-NAGI 88 (257)
T ss_pred hCCCCCEEEE-CCCc
Confidence 4 4 677777 6564
No 433
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.33 E-value=1.4 Score=35.98 Aligned_cols=83 Identities=16% Similarity=0.092 Sum_probs=52.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|.+|+.+++.+.+.|.+++. ++..... .+....+.+.- .++ -+-.|+..++.....++++.+
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~-~~r~~~~-----~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVI-FGRSAPD-----DEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEE-EcCChhh-----HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999998764 3322211 12211221111 122 244567777777887877766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..++. ..|.
T Consensus 80 ~~~~id~vi~-~ag~ 93 (258)
T PRK08628 80 KFGRIDGLVN-NAGV 93 (258)
T ss_pred hcCCCCEEEE-CCcc
Confidence 4 6788887 5564
No 434
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.30 E-value=1.6 Score=35.68 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++..... .. .+.+.+++.- .++ -+..|...++...+.++++.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~--~~--~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAI-AARHLDA--LE--KLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EcCCHHH--HH--HHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999764 3322110 10 0111111110 112 24467788888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 82 ~~~g~id~lv~-~ag~ 96 (253)
T PRK05867 82 AELGGIDIAVC-NAGI 96 (253)
T ss_pred HHhCCCCEEEE-CCCC
Confidence 65 6888887 5554
No 435
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.28 E-value=1.2 Score=36.08 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=51.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
+.+++|.|++|..|+.+++.+.+.|.+++. ++..... . -...+.+.+... ++ -+-.|...++...+.+++..
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~-~~r~~~~--~--~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAV-FDLNREA--A--EKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAE 75 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEE-ecCCHHH--H--HHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999988764 3332211 0 011111221111 12 13456667777777777766
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..+|+ ..|
T Consensus 76 ~~~~~~d~vi~-~ag 89 (250)
T TIGR03206 76 QALGPVDVLVN-NAG 89 (250)
T ss_pred HHcCCCCEEEE-CCC
Confidence 54 5777776 444
No 436
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.28 E-value=1.1 Score=39.45 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=52.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCC---CeE--E---------c-CccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG---GTE--H---------L-GLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~---G~e--i---------~-GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
+||.|+|+ |.||..++..+...|. +++ .+|.... |.. + . -+....+.++ .+ ++|++|++
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~Vv-lvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~--~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TA--NSDIVVIT 76 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEE-EEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hC--CCCEEEEc
Confidence 58999999 9999988888877664 644 4453211 110 0 1 1222346666 34 78999999
Q ss_pred eCh----------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 123 VPP----------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 123 VPp----------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
++. +.+.++++...+++-+.++++.
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~ 117 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVV 117 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 882 4556677777777766654433
No 437
>PRK07478 short chain dehydrogenase; Provisional
Probab=91.23 E-value=2.8 Score=34.21 Aligned_cols=83 Identities=25% Similarity=0.252 Sum_probs=53.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+++|.|++|.+|+.+++.+.+.|.+++.. +.... +.. .+ .+++.+. .++. +..|...++.+.+.++++.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~-~r~~~--~~~--~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVG-ARRQA--ELD--QL---VAEIRAEGGEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEE-eCCHH--HHH--HH---HHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 569999999999999999999999997643 33221 111 01 1111110 0121 3357778888888888887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 79 ~~~~~id~li~-~ag~ 93 (254)
T PRK07478 79 ERFGGLDIAFN-NAGT 93 (254)
T ss_pred HhcCCCCEEEE-CCCC
Confidence 65 6888887 5554
No 438
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=91.23 E-value=1.4 Score=44.96 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=62.2
Q ss_pred cccccCCCCCeeeccCCceEEEEccCC-CCcchh---------hHHHHHhCCeEee-ecCCCCCCeEE--cC----cccc
Q 030220 42 YGSSAAASHPAVFVDKNTRVICQGITG-KNGTFH---------TEQAIEYGTKMVG-GVTPKKGGTEH--LG----LPVF 104 (181)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~rViVvGatG-kmG~~~---------~k~~~~~g~~IVa-gVdP~~~G~ei--~G----vPVy 104 (181)
|-|.|...-.-.......||+|.|+.. ++|+.+ ++.+.+.|++++. .-||....... .+ -|.+
T Consensus 538 ~y~~~~~~~~~~~~~~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~ 617 (1050)
T TIGR01369 538 LYSTYEGERDDVPFTDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLT 617 (1050)
T ss_pred eEecCCCCCCcccCCCCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCC
Confidence 345676542223344557899999832 367733 7777888999663 34454322111 11 1322
Q ss_pred c-cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEE
Q 030220 105 N-SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLV 143 (181)
Q Consensus 105 ~-sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~I 143 (181)
- .+.++.+++++|.+|.......+..+++.+-+.|++.+
T Consensus 618 ~e~vl~i~~~e~idgVI~~~gg~~~~~la~~le~~Gi~i~ 657 (1050)
T TIGR01369 618 FEDVMNIIELEKPEGVIVQFGGQTPLNLAKALEEAGVPIL 657 (1050)
T ss_pred HHHHHHHHhhcCCCEEEEccCcHhHHHHHHHHHHCCCcEE
Confidence 2 35556667789998877766777778888888888754
No 439
>PRK07877 hypothetical protein; Provisional
Probab=91.20 E-value=0.71 Score=45.68 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=47.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCCeEEc----------CccccccHHHHhhccCCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHL----------GLPVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G~ei~----------GvPVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
+.+|+|+|+ | .|+.+...+...|. +|. .+|......... |.|=-...++.+.+.++++-|...+.
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~-lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELR-LADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEE-EEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 477999999 8 99999998888774 333 344433221000 11000012333333445555555555
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
..-.+++++.++ ++..|+.-+..|....
T Consensus 184 ~i~~~n~~~~l~-~~DlVvD~~D~~~~R~ 211 (722)
T PRK07877 184 GLTEDNVDAFLD-GLDVVVEECDSLDVKV 211 (722)
T ss_pred cCCHHHHHHHhc-CCCEEEECCCCHHHHH
Confidence 444444444442 3555555455544443
No 440
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.19 E-value=2 Score=38.81 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=56.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|.+|+.+++.+.+.|.+++. ++...... .+++..++.+. -+.+|...++.+.+.++...
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~-~~~~~~~~---------~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVC-LDVPAAGE---------ALAAVANRVGGTALALDITAPDAPARIAEHLA 279 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEE-EeCCccHH---------HHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 467999999999999999999999999774 33321111 12222222222 34568888888888888877
Q ss_pred Hc--CCCEEEEeCCCCC
Q 030220 137 EA--ELDLVVCITEGIP 151 (181)
Q Consensus 137 e~--GIk~IV~iTtG~~ 151 (181)
+. ++..+|. ..|+.
T Consensus 280 ~~~g~id~vi~-~AG~~ 295 (450)
T PRK08261 280 ERHGGLDIVVH-NAGIT 295 (450)
T ss_pred HhCCCCCEEEE-CCCcC
Confidence 65 5888888 66653
No 441
>PRK08643 acetoin reductase; Validated
Probab=91.18 E-value=1.1 Score=36.70 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
+.++|.|++|-+|+.+++.+.+.|.+++. ++..... . -.....+.+.- .++. +..|...++.+.+.++++.+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~-~~r~~~~--~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAI-VDYNEET--A--QAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCHHH--H--HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46888999999999999999999998763 3432210 0 01111111110 0121 34577888888898888876
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 76 ~~~~id~vi~-~ag~ 89 (256)
T PRK08643 76 TFGDLNVVVN-NAGV 89 (256)
T ss_pred HcCCCCEEEE-CCCC
Confidence 5 6888887 6654
No 442
>PRK05086 malate dehydrogenase; Provisional
Probab=91.15 E-value=1.3 Score=39.19 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=56.6
Q ss_pred ceEEEEccCCCCcchhhHHHHH-h--CCeEee-ecCCCCCCeE--E-c-C--cccc----ccHHHHhhccCCcEEEEeeC
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-Y--GTKMVG-GVTPKKGGTE--H-L-G--LPVF----NSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~--g~~IVa-gVdP~~~G~e--i-~-G--vPVy----~sl~e~~~~~~~DVaIdfVP 124 (181)
+||+|+|++|+.|+.++..+.. . +.+++. ..++...|.. + + + ..|. +++.+.++ ++|++|++.-
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEcCC
Confidence 4799999999999988876644 2 334443 2334332311 1 1 1 2232 35555555 7999998864
Q ss_pred h----------------HHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 125 P----------------PFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 125 p----------------~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
. ..+.+.++.+.+++.+.++++++.
T Consensus 79 ~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 79 VARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 3 156677788888899998886655
No 443
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.15 E-value=2 Score=35.36 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=51.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|-+|+.+++.+.+.|.+++ .++.+.. ... .+ .+++....++. +-.|...++.+.+..+...
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~-~~~r~~~--~~~--~~---~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 76 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLL-LVGRNAE--KLE--AL---AARLPYPGRHRWVVADLTSEAGREAVLARAR 76 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE-EEECCHH--HHH--HH---HHHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 45699999999999999999999999866 3443321 110 00 11110001122 3456777777777776665
Q ss_pred Hc-CCCEEEEeCCCCC
Q 030220 137 EA-ELDLVVCITEGIP 151 (181)
Q Consensus 137 e~-GIk~IV~iTtG~~ 151 (181)
+. ++..+|. ..|..
T Consensus 77 ~~~~id~lv~-~ag~~ 91 (263)
T PRK09072 77 EMGGINVLIN-NAGVN 91 (263)
T ss_pred hcCCCCEEEE-CCCCC
Confidence 43 5667776 66653
No 444
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=91.14 E-value=1.6 Score=38.30 Aligned_cols=107 Identities=14% Similarity=0.018 Sum_probs=68.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCC---CCC----eEEcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPK---KGG----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~---~~G----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+++|+|.|.| .-++.+.+.+...+ ..++.-.... ..+ ..+.|.==..-+.++++++++|++||.++|-+++
T Consensus 2 ~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~ 80 (257)
T COG2099 2 MMRILLLGGT-SDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAAR 80 (257)
T ss_pred CceEEEEecc-HHHHHHHHHhhccCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHH
Confidence 5789999984 46778888888765 4444322111 000 1112222223488889999999999999998874
Q ss_pred ---HHHHHHHHcCCCEEEEeCCC--------CCHHHHHHHHHHhhhh
Q 030220 130 ---AAIMEAMEAELDLVVCITEG--------IPQHDMVINFTRVNIL 165 (181)
Q Consensus 130 ---~~~~eaie~GIk~IV~iTtG--------~~~ed~~~l~~~ak~i 165 (181)
.+++-|-+.||+.+.--=.+ +.++|+.++.+++++.
T Consensus 81 iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~ 127 (257)
T COG2099 81 ISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQL 127 (257)
T ss_pred HHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhcc
Confidence 67788888999987432222 2346677777776655
No 445
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=91.13 E-value=0.52 Score=38.02 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=45.5
Q ss_pred cCCceEEEEccCCCCcchhhHHHHH--hCCeEeeecCCCCCCeEEcC--ccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGGTEHLG--LPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~--~g~~IVagVdP~~~G~ei~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
....+|++.|| |.-|......+-- .....+.+.||.+.|....| +||.+. +++.+ .++|.+++ .+.....++
T Consensus 66 ~~gk~I~~yGA-~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p-~~l~~-~~pd~viv-law~y~~EI 141 (160)
T PF08484_consen 66 AEGKRIAGYGA-GAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSP-EELKE-RKPDYVIV-LAWNYKDEI 141 (160)
T ss_dssp HTT--EEEE----SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEG-GG--S-S--SEEEE-S-GGGHHHH
T ss_pred HcCCEEEEECc-chHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCH-HHHhh-CCCCEEEE-cChhhHHHH
Confidence 45577999999 6677765554433 12445557789999966654 999964 44443 47998877 457777777
Q ss_pred HHH---HHHcCCCEEEE
Q 030220 132 IME---AMEAELDLVVC 145 (181)
Q Consensus 132 ~~e---aie~GIk~IV~ 145 (181)
.+. ..+.|-+-|+-
T Consensus 142 ~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 142 IEKLREYLERGGKFIVP 158 (160)
T ss_dssp HHHTHHHHHTT-EEEE-
T ss_pred HHHHHHHHhcCCEEEEe
Confidence 644 44677777764
No 446
>PRK06924 short chain dehydrogenase; Provisional
Probab=91.10 E-value=1.6 Score=35.44 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=46.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~ea 135 (181)
++|+|.|++|.+|+.+++.+.+.|.+|+. ++..... .++++.+.. ++ -+..|...++...+.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~-~~r~~~~----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVIS-ISRTENK----------ELTKLAEQYNSNLTFHSLDLQDVHELETNFNEI 70 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEE-EeCCchH----------HHHHHHhccCCceEEEEecCCCHHHHHHHHHHH
Confidence 46999999999999999999999998764 3432210 122222211 22 2456778888888888887
Q ss_pred HHc
Q 030220 136 MEA 138 (181)
Q Consensus 136 ie~ 138 (181)
.+.
T Consensus 71 ~~~ 73 (251)
T PRK06924 71 LSS 73 (251)
T ss_pred HHh
Confidence 653
No 447
>PRK07831 short chain dehydrogenase; Provisional
Probab=91.10 E-value=4.4 Score=33.29 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCceEEEEccCC-CCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITG-KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatG-kmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~e 134 (181)
+..+++|.|++| .+|+.+++.+.+.|.+|+. ++.+... .. .....+++.....++ -+-.|...++.+.+++++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~-~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVI-SDIHERR--LG--ETADELAAELGLGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEE-EeCCHHH--HH--HHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 346799999987 6999999999999999663 4433211 10 011111110000122 233577788888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 91 ~~~~~g~id~li~-~ag~ 107 (262)
T PRK07831 91 AVERLGRLDVLVN-NAGL 107 (262)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8765 5777777 6665
No 448
>PRK06194 hypothetical protein; Provisional
Probab=91.08 E-value=0.97 Score=37.66 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
+.+++|.|++|-+|+.+++.+.+.|.+++. ++..... .. ...+++.. .+.+ +..|...++.+.++++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~-~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVL-ADVQQDA--LD-----RAVAELRA-QGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEE-EeCChHH--HH-----HHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 357999999999999999999999998763 3432211 00 01122211 1222 34567778888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+++ ..|+
T Consensus 77 ~~~~~g~id~vi~-~Ag~ 93 (287)
T PRK06194 77 ALERFGAVHLLFN-NAGV 93 (287)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7654 5788887 5555
No 449
>PRK05717 oxidoreductase; Validated
Probab=91.08 E-value=2.2 Score=34.97 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=51.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|.+|+.+++.+.+.|.+++. ++..... .. ...++. . .++. +-.|...++...+.++++.+
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~-~~~~~~~--~~-----~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVL-ADLDRER--GS-----KVAKAL-G-ENAWFIAMDVADEAQVAAGVAEVLG 80 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEE-EcCCHHH--HH-----HHHHHc-C-CceEEEEccCCCHHHHHHHHHHHHH
Confidence 56999999999999999999998988764 3322210 00 001111 1 1121 35667778888888887766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. .+..+|. ..|+
T Consensus 81 ~~g~id~li~-~ag~ 94 (255)
T PRK05717 81 QFGRLDALVC-NAAI 94 (255)
T ss_pred HhCCCCEEEE-CCCc
Confidence 4 4778887 4554
No 450
>PRK07035 short chain dehydrogenase; Provisional
Probab=91.08 E-value=0.96 Score=36.87 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=52.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCC-cEEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
.+|+|.|++|..|..+++.+.+.|.+++ .++..... .. ...+++.+. .++ -+-+|....+.+.++++++.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi-~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVI-VSSRKLDG--CQ-----AVADAIVAAGGKAEALACHIGEMEQIDALFAHIR 80 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeCCHHH--HH-----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999877 44443211 10 111222111 011 24456777788888888877
Q ss_pred Hc--CCCEEEEeCC
Q 030220 137 EA--ELDLVVCITE 148 (181)
Q Consensus 137 e~--GIk~IV~iTt 148 (181)
+. .+..+|+.+.
T Consensus 81 ~~~~~id~li~~ag 94 (252)
T PRK07035 81 ERHGRLDILVNNAA 94 (252)
T ss_pred HHcCCCCEEEECCC
Confidence 64 4788887443
No 451
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=91.07 E-value=2.3 Score=32.19 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=54.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHHc
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie~ 138 (181)
.++|.|+++.+|+.+++.+.+.|...|..+.++....... .....+++.-. ++. +-.|+..++.+..+++++.+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~--~l~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQ--ELIQELKAPGA--KITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHH--HHHHHHHHTTS--EEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccc--ccccccccccc--ccccccccccccccccccccccccc
Confidence 5889999999999999999998777665666551000010 11122221111 222 335678889999999999955
Q ss_pred --CCCEEEEeCCCCC
Q 030220 139 --ELDLVVCITEGIP 151 (181)
Q Consensus 139 --GIk~IV~iTtG~~ 151 (181)
.+..+|+.+..+.
T Consensus 78 ~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 78 FGPLDILINNAGIFS 92 (167)
T ss_dssp HSSESEEEEECSCTT
T ss_pred ccccccccccccccc
Confidence 5677777443333
No 452
>PRK07578 short chain dehydrogenase; Provisional
Probab=91.02 E-value=2.3 Score=33.55 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=24.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCC
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP 91 (181)
+++|.|++|.+|+.+++.+.+. .+++. +++
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~~vi~-~~r 31 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-HEVIT-AGR 31 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-CcEEE-Eec
Confidence 6899999999999999998887 66663 443
No 453
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.97 E-value=0.85 Score=39.01 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=53.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+|+|.|++|.+|+.+++.+.+.|.+|+. ++.+... .. .+ .+++.+. .+++ +..|...++.+.+++++..
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~-~~R~~~~--l~--~~---~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 112 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVA-VARREDL--LD--AV---ADRITRAGGDAMAVPCDLSDLDAVDALVADVE 112 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HH---HHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999774 3332211 10 01 1111110 0111 3356677888888888776
Q ss_pred Hc--CCCEEEEeCCCCC
Q 030220 137 EA--ELDLVVCITEGIP 151 (181)
Q Consensus 137 e~--GIk~IV~iTtG~~ 151 (181)
+. ++..+|+ ..|+.
T Consensus 113 ~~~g~id~li~-~AG~~ 128 (293)
T PRK05866 113 KRIGGVDILIN-NAGRS 128 (293)
T ss_pred HHcCCCCEEEE-CCCCC
Confidence 64 6888887 66654
No 454
>PRK05650 short chain dehydrogenase; Provisional
Probab=90.90 E-value=1.7 Score=35.96 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=50.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
+|+|.|++|.+|+.+++.+.+.|.+++. ++..... .. .+ .+++... .++ -+..|+..++...+.+++..+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~-~~r~~~~--~~--~~---~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLAL-ADVNEEG--GE--ET---LKLLREAGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEE-EeCCHHH--HH--HH---HHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999998764 3322110 00 01 1111110 111 134567777777777766655
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|. ..|.
T Consensus 74 ~~~~id~lI~-~ag~ 87 (270)
T PRK05650 74 KWGGIDVIVN-NAGV 87 (270)
T ss_pred HcCCCCEEEE-CCCC
Confidence 3 6788887 5554
No 455
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.87 E-value=0.29 Score=44.19 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=50.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC------eEE--cCccccc-c-HHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG------TEH--LGLPVFN-S-VAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G------~ei--~GvPVy~-s-l~e~~~~~~~DVaIdfVPp~~ 127 (181)
..+|+|+|+ |+.|...++.+.+.|.+|. ++|+.... .++ .|+.++. + .++... ++|++|..+-...
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~d~vv~~~g~~~ 80 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGAKVI-LTDEKEEDQLKEALEELGELGIELVLGEYPEEFLE--GVDLVVVSPGVPL 80 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhh--cCCEEEECCCCCC
Confidence 467999999 7799999999999999876 56664311 001 1444432 2 223333 6888887665444
Q ss_pred HHHHHHHHHHcCCCE
Q 030220 128 AAAAIMEAMEAELDL 142 (181)
Q Consensus 128 a~~~~~eaie~GIk~ 142 (181)
....+.+|.+.|++.
T Consensus 81 ~~~~~~~a~~~~i~~ 95 (450)
T PRK14106 81 DSPPVVQAHKKGIEV 95 (450)
T ss_pred CCHHHHHHHHCCCcE
Confidence 445556666666543
No 456
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.81 E-value=1.8 Score=38.43 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC-eEeeecC--CCCC-Ce--------EEcC--cccc--ccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVT--PKKG-GT--------EHLG--LPVF--NSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~-~IVagVd--P~~~-G~--------ei~G--vPVy--~sl~e~~~~~~~DVaIdf 122 (181)
.||+|+|+ |.+|..+...+...|+ + +..+| +.+. ++ ...+ ..|. .+.++ .+ ++|++|++
T Consensus 7 ~KI~IIGa-G~vG~~ia~~la~~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l~--~aDiVI~t 81 (321)
T PTZ00082 7 RKISLIGS-GNIGGVMAYLIVLKNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED-IA--GSDVVIVT 81 (321)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH-hC--CCCEEEEC
Confidence 68999998 9999988777766675 6 33444 4421 10 0111 2233 45654 45 79999996
Q ss_pred e---------------------ChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 123 V---------------------PPPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 123 V---------------------Pp~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
. ......+.++++.+.+-+.++.+.+.
T Consensus 82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5 33446777788888887754444543
No 457
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=90.80 E-value=4 Score=33.35 Aligned_cols=80 Identities=23% Similarity=0.179 Sum_probs=53.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
.+++|.|++|-+|+.+++.+.+.|.+++. ++.... .. . ..+++.+ ...+ +..|...++.+.++++++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~-~~r~~~---~~--~---~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVL-VDRSEL---VH--E---VAAELRA-AGGEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCchH---HH--H---HHHHHHh-cCCeEEEEEEeCCCHHHHHHHHHHH
Confidence 56899999999999999999999999773 443210 00 1 1122211 1222 345778888888888888
Q ss_pred HHc--CCCEEEEeCCC
Q 030220 136 MEA--ELDLVVCITEG 149 (181)
Q Consensus 136 ie~--GIk~IV~iTtG 149 (181)
.+. ++..+|. ..|
T Consensus 79 ~~~~~~id~lv~-nAg 93 (260)
T PRK12823 79 VEAFGRIDVLIN-NVG 93 (260)
T ss_pred HHHcCCCeEEEE-CCc
Confidence 764 5777777 555
No 458
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=90.80 E-value=1.4 Score=36.39 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|-+|+.+++.+.+.|.+|+. ++..... ++++.++. ++ -+-.|...++.+.+.+++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAV-LERSAEK-----------LASLRQRFGDHVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHHH-----------HHHHHHHhCCcceEEEccCCCHHHHHHHHHH
Confidence 357999999999999999999999999764 3432211 11111111 12 234566777788888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..+|+ ..|+
T Consensus 74 ~~~~~g~id~li~-~ag~ 90 (263)
T PRK06200 74 TVDAFGKLDCFVG-NAGI 90 (263)
T ss_pred HHHhcCCCCEEEE-CCCC
Confidence 7765 5777877 6665
No 459
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.78 E-value=0.98 Score=40.62 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=58.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCC---eEEcCcccc-cc---HHHHhh--ccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGG---TEHLGLPVF-NS---VAEAKA--ETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G---~ei~GvPVy-~s---l~e~~~--~~~~DVaIdfVPp~~ 127 (181)
..+|+|+|+ |+.|+.+++.+.+.|.+++. ..||.... .+..+++++ .+ .+.+.+ -.++|++|..++.+.
T Consensus 231 ~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 231 VKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 577999999 99999999998888888653 23444311 011245443 22 222211 127899988887654
Q ss_pred HHH-HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 128 AAA-AIMEAMEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 128 a~~-~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
..- .+..|-+.|++.|+..+. +.++...++++
T Consensus 310 ~n~~~~~~~~~~~~~~ii~~~~--~~~~~~~~~~~ 342 (453)
T PRK09496 310 ANILSSLLAKRLGAKKVIALVN--RPAYVDLVEGL 342 (453)
T ss_pred HHHHHHHHHHHhCCCeEEEEEC--CcchHHHHHhc
Confidence 333 333455667776665332 33344444443
No 460
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=90.75 E-value=2.5 Score=35.07 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=52.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
...++|.|++|-+|+.+++.+.+.|.+++. ++..... . ..+.+-+++...+ +-.|...++.+.+.+++
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~-~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGAKVAI-LDRNQEK--A------EAVVAEIKAAGGEALAVKADVLDKESLEQARQQ 80 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--H------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 356889999999999999999999998764 4443211 1 1111111111112 34566677778877777
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
+.+. ++..+|+ ..|
T Consensus 81 ~~~~~g~id~li~-~ag 96 (278)
T PRK08277 81 ILEDFGPCDILIN-GAG 96 (278)
T ss_pred HHHHcCCCCEEEE-CCC
Confidence 7664 6788887 555
No 461
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.68 E-value=0.56 Score=43.03 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=49.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--------EEcCccccc--cHHHHhhccCCcEEEEeeCh-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--------EHLGLPVFN--SVAEAKAETKANASVIYVPP-P 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--------ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp-~ 126 (181)
..||.|+|. |+-|...++.+.+.|+++. +.|.+.... +-.|+.++. ...+.++ ++|++|.. |. .
T Consensus 14 ~~~i~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~--~~dlVV~S-pgi~ 88 (458)
T PRK01710 14 NKKVAVVGI-GVSNIPLIKFLVKLGAKVT-AFDKKSEEELGEVSNELKELGVKLVLGENYLDKLD--GFDVIFKT-PSMR 88 (458)
T ss_pred CCeEEEEcc-cHHHHHHHHHHHHCCCEEE-EECCCCCccchHHHHHHHhCCCEEEeCCCChHHhc--cCCEEEEC-CCCC
Confidence 368999999 9999999999999999866 455432110 113666653 2233344 67866554 31 1
Q ss_pred HHHHHHHHHHHcCCCE
Q 030220 127 FAAAAIMEAMEAELDL 142 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~ 142 (181)
.....+..|.+.||+.
T Consensus 89 ~~~p~~~~a~~~~i~i 104 (458)
T PRK01710 89 IDSPELVKAKEEGAYI 104 (458)
T ss_pred CCchHHHHHHHcCCcE
Confidence 2235666777777764
No 462
>PRK06914 short chain dehydrogenase; Provisional
Probab=90.66 E-value=2.4 Score=35.11 Aligned_cols=85 Identities=11% Similarity=0.133 Sum_probs=49.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
..++|.|++|.+|+.+++.+.+.|.+|++. +..... .. .+...+.+.....++. +-.|...++.+.+ ++++.+
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~-~r~~~~--~~--~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~ 77 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIAT-MRNPEK--QE--NLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLK 77 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEE-eCCHHH--HH--HHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHH
Confidence 458999999999999999999999998754 222111 00 0111111110001222 2457777888877 777665
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..||. ..|.
T Consensus 78 ~~~~id~vv~-~ag~ 91 (280)
T PRK06914 78 EIGRIDLLVN-NAGY 91 (280)
T ss_pred hcCCeeEEEE-CCcc
Confidence 4 4666766 5554
No 463
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=90.65 E-value=0.61 Score=40.20 Aligned_cols=83 Identities=25% Similarity=0.248 Sum_probs=57.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE----cCcccc-------ccHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----LGLPVF-------NSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei----~GvPVy-------~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+||+|.|.| ..|+.+++.+.+.|. ++..|.-..+++.. .+++|. +.++++++++++|++||.++|-+
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA 78 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFA 78 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchH
Confidence 579999984 578899999999886 44433322222111 122332 25788888889999999999966
Q ss_pred H---HHHHHHHHHcCCCEE
Q 030220 128 A---AAAIMEAMEAELDLV 143 (181)
Q Consensus 128 a---~~~~~eaie~GIk~I 143 (181)
. +.+.+-|-+.||+.+
T Consensus 79 ~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 79 AEISQNAIEACRELGIPYL 97 (249)
T ss_pred HHHHHHHHHHHhhcCcceE
Confidence 4 466677778899987
No 464
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=90.59 E-value=0.075 Score=43.47 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=61.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHH--HHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFA--AAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a--~~~~~e 134 (181)
++++|+|+ |+.|+-+++.+...|.+ +|..+||-+.-+ -..|+.|- +++|+.+ +.|+.|-.+-...+ .+..+.
T Consensus 24 k~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~--~adi~vtaTG~~~vi~~e~~~~ 99 (162)
T PF00670_consen 24 KRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALR--DADIFVTATGNKDVITGEHFRQ 99 (162)
T ss_dssp SEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTT--T-SEEEE-SSSSSSB-HHHHHH
T ss_pred CEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHh--hCCEEEECCCCccccCHHHHHH
Confidence 56999999 99999999999999998 666788854221 12688875 6888887 78998887776554 222222
Q ss_pred HHHcCCCEEEEeCCCCCHH-HHHHHHHHh
Q 030220 135 AMEAELDLVVCITEGIPQH-DMVINFTRV 162 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~e-d~~~l~~~a 162 (181)
..=..|++-..+|+.| |+..|++.+
T Consensus 100 ---mkdgail~n~Gh~d~Eid~~~L~~~~ 125 (162)
T PF00670_consen 100 ---MKDGAILANAGHFDVEIDVDALEANA 125 (162)
T ss_dssp ---S-TTEEEEESSSSTTSBTHHHHHTCT
T ss_pred ---hcCCeEEeccCcCceeEeeccccccC
Confidence 2334566657777766 566666663
No 465
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=90.58 E-value=1.7 Score=35.18 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+++....... . ... .+ .+++ ++...+ +-.|+..++.+.+.+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~-~-~~~--~~---~~~l-~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK-E-AAE--NL---VNEL-GKEGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH-H-HHH--HH---HHHH-HhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 457999999999999999999999999875333221 1 010 01 1222 111122 34566777788888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..|+. ..|+
T Consensus 78 ~~~~~~~id~vi~-~ag~ 94 (247)
T PRK12935 78 AVNHFGKVDILVN-NAGI 94 (247)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7764 3677777 5665
No 466
>PLN00106 malate dehydrogenase
Probab=90.56 E-value=1.7 Score=38.86 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=56.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC--eEe-eecCCCCCCeEE------cCccccc-----cHHHHhhccCCcEEEEe
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT--KMV-GGVTPKKGGTEH------LGLPVFN-----SVAEAKAETKANASVIY 122 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~--~IV-agVdP~~~G~ei------~GvPVy~-----sl~e~~~~~~~DVaIdf 122 (181)
+..||.|+|++|+.|+.....+...+. +++ .++++ ..|... ....+.. ++.+..+ ++|++|++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~--~aDiVVit 93 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAADVSHINTPAQVRGFLGDDQLGDALK--GADLVIIP 93 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEchhhhCCcCceEEEEeCCCCHHHHcC--CCCEEEEe
Confidence 346899999999999988887765433 333 24444 333111 0123332 2355556 79999987
Q ss_pred eC----------------hHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 123 VP----------------PPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 123 VP----------------p~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
.- ...+.+.++.+.+++...++.+.+.
T Consensus 94 AG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSN 136 (323)
T PLN00106 94 AGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISN 136 (323)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 53 2345677788888898887765554
No 467
>PRK05876 short chain dehydrogenase; Provisional
Probab=90.51 E-value=2 Score=36.23 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=53.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
+.++|.|++|-+|+.+++.+.+.|.+++. ++.+... . . ...+++ +....+ +..|...++.+.++++++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~-~~r~~~~--l---~--~~~~~l-~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 77 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVL-GDVDKPG--L---R--QAVNHL-RAEGFDVHGVMCDVRHREEVTHLADEA 77 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--H---H--HHHHHH-HhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999763 3322211 1 0 011222 111222 346778888899888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. .+..+|+ ..|+
T Consensus 78 ~~~~g~id~li~-nAg~ 93 (275)
T PRK05876 78 FRLLGHVDVVFS-NAGI 93 (275)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 765 4777777 6664
No 468
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.47 E-value=2.1 Score=34.64 Aligned_cols=84 Identities=23% Similarity=0.212 Sum_probs=52.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCC-cEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|-+|+..++.+.+.|.+++. ++..... ... + .+++.+. .++ -+..|...++...+...+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~-~~r~~~~--~~~--~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVV-ADINAEG--AER--V---AKQIVADGGTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--HHH--H---HHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 356999999999999999999999998774 4433211 000 1 1111111 012 2345666677777777766
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..|+. +.|+
T Consensus 78 ~~~~~~id~vi~-~ag~ 93 (250)
T PRK07774 78 VSAFGGIDYLVN-NAAI 93 (250)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 544 4777887 6665
No 469
>PRK05875 short chain dehydrogenase; Provisional
Probab=90.45 E-value=0.84 Score=37.82 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=52.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.+++|.|++|..|+.+++.+.+.|.+++. ++..... .. +....+.+.....++. +..|...++.+.+.++++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~-~~r~~~~--~~--~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMI-VGRNPDK--LA--AAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAAT 81 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEE-EeCCHHH--HH--HHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999998764 4433211 11 1111111110001111 2246677888888888877
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..++. ..|
T Consensus 82 ~~~~~~d~li~-~ag 95 (276)
T PRK05875 82 AWHGRLHGVVH-CAG 95 (276)
T ss_pred HHcCCCCEEEE-CCC
Confidence 65 6777777 544
No 470
>PRK07102 short chain dehydrogenase; Provisional
Probab=90.44 E-value=1.1 Score=36.48 Aligned_cols=84 Identities=11% Similarity=0.058 Sum_probs=48.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++|+|.|++|..|+.+++.+.+.|.++++ ++..... .. .....+.+... .+++ +-.|...++...+.++++.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~-~~r~~~~--~~--~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYL-AARDVER--LE--RLADDLRARGA-VAVSTHELDILDTASHAAFLDSLPA 75 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEE-EeCCHHH--HH--HHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhh
Confidence 57999999999999999999999998664 3433211 10 11111111000 0111 22344556666677666654
Q ss_pred cCCCEEEEeCCCC
Q 030220 138 AELDLVVCITEGI 150 (181)
Q Consensus 138 ~GIk~IV~iTtG~ 150 (181)
.+..+++ ..|.
T Consensus 76 -~~d~vv~-~ag~ 86 (243)
T PRK07102 76 -LPDIVLI-AVGT 86 (243)
T ss_pred -cCCEEEE-CCcC
Confidence 4677776 5443
No 471
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.44 E-value=1.1 Score=38.68 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC-eEee-ecCCCCCCeE---E------c--Ccccc--ccHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVG-GVTPKKGGTE---H------L--GLPVF--NSVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~-~IVa-gVdP~~~G~e---i------~--GvPVy--~sl~e~~~~~~~DVaIdf 122 (181)
++||+|+|+ |.+|..+...+...|. +++- ++++.+.... + . ...+. .+.++ .+ ++|++|++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~--~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IA--GSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HC--CCCEEEEC
Confidence 468999999 9999988887777654 6542 3444332111 0 0 11222 24543 44 78999988
Q ss_pred eC--h--------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 123 VP--P--------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 123 VP--p--------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
+. . +...+.+++..+.+-+.++++.+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 52 2 55777777777777776444343
No 472
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=90.36 E-value=3.5 Score=33.40 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=48.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|++|..|+.+++.+.+.|.++++. +... ++... .++ -+-.|+..++...+.++++.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~-~~~~-------~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~ 71 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGF-DQAF-------LTQED--------YPFATFVLDVSDAAAVAQVCQRLL 71 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEE-ecch-------hhhcC--------CceEEEEecCCCHHHHHHHHHHHH
Confidence 3579999999999999999999999987754 2221 00000 011 13345667777777777766
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. .+..++. ..|.
T Consensus 72 ~~~~~id~vi~-~ag~ 86 (252)
T PRK08220 72 AETGPLDVLVN-AAGI 86 (252)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 54 3667776 4444
No 473
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=90.29 E-value=0.2 Score=45.78 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=44.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCccc--cccHHHHhhccCCcEEEEeeChHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPV--FNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
+..+|+|+|+ |.||+.+++.+...|.+-|..+|+.... ... .|..+ +.++.+.+. ++|++|.+++....
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~--~aDvVI~aT~s~~~ 255 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALA--EADIVISSTGAPHP 255 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhc--cCCEEEECCCCCCc
Confidence 4478999999 9999999999988888533344543211 111 12222 235555555 79999999985543
No 474
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=90.28 E-value=2.9 Score=35.86 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh-ccCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~-~~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|-+|..+++.+.+.|.+|+.. +.+... .. .+ .+++.. ..++. +..|...++.+.+++++.
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~-~r~~~~--~~--~~---~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGWHVIMA-CRNLKK--AE--AA---AQELGIPPDSYTIIHIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-ECCHHH--HH--HH---HHHhhccCCceEEEEecCCCHHHHHHHHHHH
Confidence 4569999999999999999999999887743 332110 00 00 111100 01222 346778888888888886
Q ss_pred HHcC--CCEEEEeCCCC
Q 030220 136 MEAE--LDLVVCITEGI 150 (181)
Q Consensus 136 ie~G--Ik~IV~iTtG~ 150 (181)
.+.+ +..+|+ ..|+
T Consensus 78 ~~~~~~iD~li~-nAg~ 93 (322)
T PRK07453 78 RALGKPLDALVC-NAAV 93 (322)
T ss_pred HHhCCCccEEEE-CCcc
Confidence 6654 888887 5553
No 475
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.27 E-value=0.98 Score=37.57 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE------cCccccc-cH-HHHhhccCCcEEEEeeChH-HH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFN-SV-AEAKAETKANASVIYVPPP-FA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei------~GvPVy~-sl-~e~~~~~~~DVaIdfVPp~-~a 128 (181)
..+|+|+|+ |+.|..-++.+.+.|.+|. .|+|.... ++ ..+.... +. .+.++ ++|++|..+... .-
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga~Vt-Vvsp~~~~-~l~~l~~~~~i~~~~~~~~~~dl~--~~~lVi~at~d~~ln 83 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGAQLR-VIAEELES-ELTLLAEQGGITWLARCFDADILE--GAFLVIAATDDEELN 83 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCEEE-EEcCCCCH-HHHHHHHcCCEEEEeCCCCHHHhC--CcEEEEECCCCHHHH
Confidence 468999999 9999998999999998865 66776532 11 1222211 11 22234 689988888776 55
Q ss_pred HHHHHHHHHcCCCE
Q 030220 129 AAAIMEAMEAELDL 142 (181)
Q Consensus 129 ~~~~~eaie~GIk~ 142 (181)
..+..+|-+.|+..
T Consensus 84 ~~i~~~a~~~~ilv 97 (205)
T TIGR01470 84 RRVAHAARARGVPV 97 (205)
T ss_pred HHHHHHHHHcCCEE
Confidence 67888888888765
No 476
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=90.26 E-value=3.5 Score=33.48 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=50.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEE-EEe--eChHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS-VIY--VPPPFAAAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVa-Idf--VPp~~a~~~~~ 133 (181)
+..+|+|.|++|.+|..+++.+.+.|.+++. ++.... ... .....+.+.. ..++.+. .|. ...+...++++
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~-~~r~~~--~~~--~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~ 84 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGATVIL-LGRTEE--KLE--AVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLAD 84 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCcEEE-EeCCHH--HHH--HHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHH
Confidence 5567999999999999999999998988774 443321 110 1111222110 0112111 222 25566777777
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
.+.+. .+..++. ..|.
T Consensus 85 ~~~~~~~~id~vi~-~Ag~ 102 (247)
T PRK08945 85 TIEEQFGRLDGVLH-NAGL 102 (247)
T ss_pred HHHHHhCCCCEEEE-CCcc
Confidence 76654 5777877 5544
No 477
>PRK08862 short chain dehydrogenase; Provisional
Probab=90.25 E-value=1.4 Score=36.32 Aligned_cols=83 Identities=5% Similarity=-0.001 Sum_probs=52.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|+++.+|+.+++.+.+.|.+++. ++.+... .. .++..+.+.- .++ -...|...++.+.+.++++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~-~~r~~~~--l~--~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 77 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLIL-CDQDQSA--LK--DTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIE 77 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEE-EcCCHHH--HH--HHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999774 4443211 10 1111121110 011 12245667888888888887
Q ss_pred Hc---CCCEEEEeC
Q 030220 137 EA---ELDLVVCIT 147 (181)
Q Consensus 137 e~---GIk~IV~iT 147 (181)
+. ++..+|+.+
T Consensus 78 ~~~g~~iD~li~na 91 (227)
T PRK08862 78 QQFNRAPDVLVNNW 91 (227)
T ss_pred HHhCCCCCEEEECC
Confidence 64 478887733
No 478
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.24 E-value=2.3 Score=34.46 Aligned_cols=83 Identities=18% Similarity=0.119 Sum_probs=50.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~ea 135 (181)
.+++|.|++|.+|+.+++.+.+.|.++++. +.+... .. ..+.+.++.. ++ -+-.|...++...++++++
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~-~r~~~~-~~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVN-YRQKAP-RA------NKVVAEIEAAGGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEE-eCCchH-hH------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 579999999999999999999989997753 222110 00 0111111111 11 2344677788777777776
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|. ..|.
T Consensus 79 ~~~~~~~d~vi~-~ag~ 94 (248)
T PRK07806 79 REEFGGLDALVL-NASG 94 (248)
T ss_pred HHhCCCCcEEEE-CCCC
Confidence 554 5676666 4444
No 479
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.21 E-value=0.19 Score=37.05 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE-cCccccc-cHHHHhhccCCcEEEEeeChHHH-HHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFN-SVAEAKAETKANASVIYVPPPFA-AAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei-~GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a-~~~~~ 133 (181)
+..+|+|+|. |+.|..-++.+++.|.++. .++|.. . +. .-+.... ..++.++ ++|+++..++.... ..+.+
T Consensus 6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~-vis~~~-~-~~~~~i~~~~~~~~~~l~--~~~lV~~at~d~~~n~~i~~ 79 (103)
T PF13241_consen 6 KGKRVLVVGG-GPVAARKARLLLEAGAKVT-VISPEI-E-FSEGLIQLIRREFEEDLD--GADLVFAATDDPELNEAIYA 79 (103)
T ss_dssp TT-EEEEEEE-SHHHHHHHHHHCCCTBEEE-EEESSE-H-HHHTSCEEEESS-GGGCT--TESEEEE-SS-HHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCch-h-hhhhHHHHHhhhHHHHHh--hheEEEecCCCHHHHHHHHH
Confidence 3478999999 9999999999999888855 455552 0 00 1111111 2333344 68999999855444 44555
Q ss_pred HHHHcCCCEE
Q 030220 134 EAMEAELDLV 143 (181)
Q Consensus 134 eaie~GIk~I 143 (181)
+|-+.|+..-
T Consensus 80 ~a~~~~i~vn 89 (103)
T PF13241_consen 80 DARARGILVN 89 (103)
T ss_dssp HHHHTTSEEE
T ss_pred HHhhCCEEEE
Confidence 5555676543
No 480
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=90.20 E-value=0.92 Score=41.01 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=61.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcC--ccccc-------cHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLG--LPVFN-------SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~G--vPVy~-------sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
++|+|.|..|-.|+-.+..+++.|+++| .+|--..|- .+.- .+.|. -++++.+++++|.+|-|--...
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vv-V~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~ 79 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVV-VLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASIS 79 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEE-EEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccccc
Confidence 4699999999999999999999999977 444333331 1111 23332 4888888899999998864332
Q ss_pred ------------------HHHHHHHHHHcCCCEEEE
Q 030220 128 ------------------AAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 128 ------------------a~~~~~eaie~GIk~IV~ 145 (181)
....++.+.++||+.+|-
T Consensus 80 VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vF 115 (329)
T COG1087 80 VGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIF 115 (329)
T ss_pred cchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEE
Confidence 345678888999999874
No 481
>PRK07576 short chain dehydrogenase; Provisional
Probab=90.00 E-value=1.7 Score=36.17 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=52.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|..|+.+++.+.+.|.+++. ++..... .. .....+.+.. .++. +.+|...++.+.+.++++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~~V~~-~~r~~~~--~~--~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGANVAV-ASRSQEK--VD--AAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--HH--HHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999998764 4443211 11 1111111110 0111 2356777888888888877
Q ss_pred Hc--CCCEEEEe
Q 030220 137 EA--ELDLVVCI 146 (181)
Q Consensus 137 e~--GIk~IV~i 146 (181)
+. ++..+|+.
T Consensus 82 ~~~~~iD~vi~~ 93 (264)
T PRK07576 82 DEFGPIDVLVSG 93 (264)
T ss_pred HHcCCCCEEEEC
Confidence 54 68888873
No 482
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.97 E-value=0.53 Score=43.09 Aligned_cols=84 Identities=24% Similarity=0.277 Sum_probs=47.5
Q ss_pred ccCCceEEEEccCCCCcch-hhHHHHHhCCeEeeecCCCCCC--eEE--cCccccc-cHHHHhhccCCcEEEEeeChHHH
Q 030220 55 VDKNTRVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGG--TEH--LGLPVFN-SVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~-~~k~~~~~g~~IVagVdP~~~G--~ei--~GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
+.+..+|.|+|+ |+.|.. +++.+.+.|.++. +.|.+... .++ .|++++. .-.+.++ ++|++|..--=..-
T Consensus 4 ~~~~~~v~viG~-G~sG~s~~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~--~~d~vv~spgi~~~ 79 (461)
T PRK00421 4 LRRIKRIHFVGI-GGIGMSGLAEVLLNLGYKVS-GSDLKESAVTQRLLELGAIIFIGHDAENIK--DADVVVYSSAIPDD 79 (461)
T ss_pred cCCCCEEEEEEE-chhhHHHHHHHHHhCCCeEE-EECCCCChHHHHHHHCCCEEeCCCCHHHCC--CCCEEEECCCCCCC
Confidence 455678999999 999998 6888888899976 45543211 111 2565542 1122233 56755443211111
Q ss_pred HHHHHHHHHcCCCE
Q 030220 129 AAAIMEAMEAELDL 142 (181)
Q Consensus 129 ~~~~~eaie~GIk~ 142 (181)
...+++|.+.|++.
T Consensus 80 ~~~~~~a~~~~i~i 93 (461)
T PRK00421 80 NPELVAARELGIPV 93 (461)
T ss_pred CHHHHHHHHCCCcE
Confidence 23455556666554
No 483
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=89.97 E-value=0.55 Score=43.65 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=53.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cC--ccccccHHHHhhccCCcEEEEeeChH---H
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LG--LPVFNSVAEAKAETKANASVIYVPPP---F 127 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~G--vPVy~sl~e~~~~~~~DVaIdfVPp~---~ 127 (181)
+..+|+|+|+ |.||..+++.+.+.|..-+-..|....- +++ .| +--|+++.+.+. ++|++|..|.+. .
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~--~~DvVissTsa~~~ii 253 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALA--EADVVISSTSAPHPII 253 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhh--hCCEEEEecCCCcccc
Confidence 4678999999 9999999999999997755566755422 111 23 222335666666 799999985433 3
Q ss_pred HHHHHHHHHHc
Q 030220 128 AAAAIMEAMEA 138 (181)
Q Consensus 128 a~~~~~eaie~ 138 (181)
-.+.++.+++.
T Consensus 254 ~~~~ve~a~~~ 264 (414)
T COG0373 254 TREMVERALKI 264 (414)
T ss_pred CHHHHHHHHhc
Confidence 45666666554
No 484
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.89 E-value=3.4 Score=33.59 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=51.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+++. ++..... . ....+++ ++...+ +..|...++...+.+++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~-~~r~~~~--~-----~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAI-ADLNQDG--A-----NAVADEI-NKAGGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEE-EeCChHH--H-----HHHHHHH-HhcCceEEEEECCCCCHHHHHHHHHH
Confidence 357999999999999999999999999774 3433211 0 0011121 111222 34567778877777776
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 78 ~~~~~~~~d~vi~-~ag~ 94 (262)
T PRK13394 78 VAERFGSVDILVS-NAGI 94 (262)
T ss_pred HHHHcCCCCEEEE-CCcc
Confidence 6532 4777777 5554
No 485
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.89 E-value=0.42 Score=44.45 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEcC-ccccc-cHHHHhhccCCcE-EEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHLG-LPVFN-SVAEAKAETKANA-SVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~G-vPVy~-sl~e~~~~~~~DV-aIdfVPp~~a~~~~~e 134 (181)
+||.|+|. |-.|-...-.+.+.|-+++| .+|+++...-..| .|+|. -++++++++.-+- .--++..+.+.+.++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad- 78 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD- 78 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC-
Q ss_pred HHHcCCCEEEEeCCCCCHH-----HHHHHHHHhhhh
Q 030220 135 AMEAELDLVVCITEGIPQH-----DMVINFTRVNIL 165 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~e-----d~~~l~~~ak~i 165 (181)
|+.++.|-|.. |+..++.++++|
T Consensus 79 --------v~fIavgTP~~~dg~aDl~~V~ava~~i 106 (414)
T COG1004 79 --------VVFIAVGTPPDEDGSADLSYVEAVAKDI 106 (414)
T ss_pred --------EEEEEcCCCCCCCCCccHHHHHHHHHHH
No 486
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=89.88 E-value=1.6 Score=40.89 Aligned_cols=88 Identities=14% Similarity=-0.023 Sum_probs=54.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCC-----eEeeecCCCCCCeE------------E----------------cCcc--cc
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGT-----KMVGGVTPKKGGTE------------H----------------LGLP--VF 104 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~-----~IVagVdP~~~G~e------------i----------------~GvP--Vy 104 (181)
||+|+|+ |-.|.++++.+...|+ .-+..+|+...... + .++. .|
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 6899999 9999999999988887 43435665544311 0 0111 11
Q ss_pred c-cH---------HHHhhccCCcEEEEee-ChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 105 N-SV---------AEAKAETKANASVIYV-PPPFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 105 ~-sl---------~e~~~~~~~DVaIdfV-Pp~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
. .+ .++.+ ++|++|+++ +.++-+-+-+.|...+++.|-+-|.|+
T Consensus 80 ~~~v~~~~~~~~~~~f~~--~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~ 134 (435)
T cd01490 80 QNRVGPETEHIFNDEFWE--KLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGT 134 (435)
T ss_pred ecccChhhhhhhhHHHhc--CCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 1 11 12223 578888886 444445566777788888887656554
No 487
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=89.81 E-value=0.76 Score=41.32 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=59.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC--Cc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~--~D-VaIdfVPp~~a~~~~~e 134 (181)
.| .+|.|+|...|+..++.+.+.|+++| .|.+.... +. -+ -+|+.++++ +. +++||+.++.+++.+++
T Consensus 50 ~W-AVVTGaTDGIGKayA~eLAkrG~nvv-LIsRt~~K--L~--~v---~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~ 120 (312)
T KOG1014|consen 50 SW-AVVTGATDGIGKAYARELAKRGFNVV-LISRTQEK--LE--AV---AKEIEEKYKVEVRIIAIDFTKGDEVYEKLLE 120 (312)
T ss_pred CE-EEEECCCCcchHHHHHHHHHcCCEEE-EEeCCHHH--HH--HH---HHHHHHHhCcEEEEEEEecCCCchhHHHHHH
Confidence 35 67889999999999999999999966 77766522 21 12 244444444 33 68899999999999998
Q ss_pred HHHcC-CCEEEEeCCCCCH
Q 030220 135 AMEAE-LDLVVCITEGIPQ 152 (181)
Q Consensus 135 aie~G-Ik~IV~iTtG~~~ 152 (181)
-++.. |-..|+ --|...
T Consensus 121 ~l~~~~VgILVN-NvG~~~ 138 (312)
T KOG1014|consen 121 KLAGLDVGILVN-NVGMSY 138 (312)
T ss_pred HhcCCceEEEEe-cccccC
Confidence 88764 444444 555444
No 488
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=89.80 E-value=0.55 Score=35.52 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=49.0
Q ss_pred ceEEEEccCCCCcc--hhhHHHHHh-CC-eEeeecCCCCCCeEEc--Cccc--cc--cHHHHhhccCCcEEEEeeChHHH
Q 030220 59 TRVICQGITGKNGT--FHTEQAIEY-GT-KMVGGVTPKKGGTEHL--GLPV--FN--SVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~--~~~k~~~~~-g~-~IVagVdP~~~G~ei~--GvPV--y~--sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
+||+|+|- | || +++..+.+. .. ++.+ .|+..|..-. .+++ -+ .+.++.+++++|.+|+---...+
T Consensus 1 MkVLviGs-G--gREHAia~~l~~s~~v~~v~~--aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlvvvGPE~pL~ 75 (100)
T PF02844_consen 1 MKVLVIGS-G--GREHAIAWKLSQSPSVEEVYV--APGNPGTAELGKNVPIDITDPEELADFAKENKIDLVVVGPEAPLV 75 (100)
T ss_dssp EEEEEEES-S--HHHHHHHHHHTTCTTEEEEEE--EE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEEEESSHHHHH
T ss_pred CEEEEECC-C--HHHHHHHHHHhcCCCCCEEEE--eCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEEEECChHHHH
Confidence 58999997 5 56 445555553 33 3442 2333231111 1222 11 45666667799999999999999
Q ss_pred HHHHHHHHHcCCCEE
Q 030220 129 AAAIMEAMEAELDLV 143 (181)
Q Consensus 129 ~~~~~eaie~GIk~I 143 (181)
..++|.+.+.||+.+
T Consensus 76 ~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 76 AGLADALRAAGIPVF 90 (100)
T ss_dssp TTHHHHHHHTT-CEE
T ss_pred HHHHHHHHHCCCcEE
Confidence 999999999998753
No 489
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=89.76 E-value=4.1 Score=32.71 Aligned_cols=84 Identities=13% Similarity=0.005 Sum_probs=53.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCC-cEEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..++|.|++|.+|+.+++.+.+.|.+++....+... +......++.+. .++ -+-.|...++.+.++++++.
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~ 74 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLH-------AAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAID 74 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChH-------HHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 468999999999999999999999997654333221 111111222110 011 24567777888888888876
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|. ..|+
T Consensus 75 ~~~~~id~vi~-~ag~ 89 (247)
T PRK09730 75 QHDEPLAALVN-NAGI 89 (247)
T ss_pred HhCCCCCEEEE-CCCC
Confidence 53 5777777 5665
No 490
>PRK07832 short chain dehydrogenase; Provisional
Probab=89.67 E-value=2.1 Score=35.61 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=53.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cC-Cc-EEEEeeChHHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TK-AN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~-~D-VaIdfVPp~~a~~~~~eai 136 (181)
+++|.|++|.+|+.+++.+.+.|.+++. ++.+... . -...+++... .+ .. ...|...++.+.+.++++.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~-~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFL-TDRDADG--L-----AQTVADARALGGTVPEHRALDISDYDAVAAFAADIH 73 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEE-EeCCHHH--H-----HHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHH
Confidence 5899999999999999999999998664 3432211 0 0111222111 11 22 3578888888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|.
T Consensus 74 ~~~~~id~lv~-~ag~ 88 (272)
T PRK07832 74 AAHGSMDVVMN-IAGI 88 (272)
T ss_pred HhcCCCCEEEE-CCCC
Confidence 64 5787887 5554
No 491
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.66 E-value=1.6 Score=38.71 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=60.4
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC--eEEcC--cccccc--HHHHh----hccCCcEEEEe
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG--TEHLG--LPVFNS--VAEAK----AETKANASVIY 122 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G--~ei~G--vPVy~s--l~e~~----~~~~~DVaIdf 122 (181)
.+++..+|+|.|++|--|+..++..+..|..+++.+. +.+.. .+... +--|.+ +.+.+ ....+|+++|.
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~ 218 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDT 218 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEEC
Confidence 3556788999999999999999999998855554433 22211 01110 111432 33333 22369999999
Q ss_pred eChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 123 VPPPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 123 VPp~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
+-.+...+.+..+...|.=..++.+.|
T Consensus 219 vG~~~~~~~l~~l~~~G~lv~ig~~~g 245 (326)
T COG0604 219 VGGDTFAASLAALAPGGRLVSIGALSG 245 (326)
T ss_pred CCHHHHHHHHHHhccCCEEEEEecCCC
Confidence 999999886666555554445554554
No 492
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=89.63 E-value=2.2 Score=38.74 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=68.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccc---ccHHHHhhccCCcEEEEeeChHHHHHH---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF---NSVAEAKAETKANASVIYVPPPFAAAA--- 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy---~sl~e~~~~~~~DVaIdfVPp~~a~~~--- 131 (181)
.++|.++|+ |+.|+.+++.+..+|.+|..----.... +. -...| -++++... +.|++++..|-..--..
T Consensus 162 gK~vgilG~-G~IG~~ia~rL~~Fg~~i~y~~r~~~~~-~~-~~~~~~~~~d~~~~~~--~sD~ivv~~pLt~~T~~liN 236 (336)
T KOG0069|consen 162 GKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLPP-EE-AYEYYAEFVDIEELLA--NSDVIVVNCPLTKETRHLIN 236 (336)
T ss_pred CCEEEEecC-cHHHHHHHHhhhhccceeeeecccCCch-hh-HHHhcccccCHHHHHh--hCCEEEEecCCCHHHHHHhh
Confidence 467999999 9999999999999886666431111111 11 11233 38888887 89999999886544332
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
-+.+...+...++.-+.-=..=|.+.+.++.+.-.|+.
T Consensus 237 k~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~ 274 (336)
T KOG0069|consen 237 KKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAG 274 (336)
T ss_pred HHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCccc
Confidence 23333445555433354445566677777777766654
No 493
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=89.61 E-value=3.1 Score=35.52 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=62.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCe-Eeee-----cCCCCCCeEEcCccc-cccHHHHhhc-cCCcEEEEe-----
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTK-MVGG-----VTPKKGGTEHLGLPV-FNSVAEAKAE-TKANASVIY----- 122 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~-IVag-----VdP~~~G~ei~GvPV-y~sl~e~~~~-~~~DVaIdf----- 122 (181)
+++++.|.|+||--|+...+.+.+. -|. +++. +||.... .+.-..| |+.+++.... .++||+..+
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~k-~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTR 95 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATDK-VVAQVEVDFSKLSQLATNEQGPDVLFCALGTTR 95 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccccc-eeeeEEechHHHHHHHhhhcCCceEEEeecccc
Confidence 4678999999999999999999985 455 4432 4554422 2221222 2346665433 378998765
Q ss_pred ----------eChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 123 ----------VPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 123 ----------VPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
|..+.+.+.++.|-+.|++.++-++
T Consensus 96 gkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvS 130 (238)
T KOG4039|consen 96 GKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVS 130 (238)
T ss_pred cccccCceEeechHHHHHHHHHHHhCCCeEEEEEe
Confidence 4678899999999999999977654
No 494
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=89.60 E-value=0.91 Score=46.49 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=30.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG 94 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~ 94 (181)
..+|+|+|+ |-+|..+++++.-.|..-+..+|+...
T Consensus 24 ~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v 59 (1008)
T TIGR01408 24 KSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKC 59 (1008)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCee
Confidence 378999999 889999999999999886667776653
No 495
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=89.55 E-value=1.7 Score=35.59 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=51.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++.+... .. .+.+.+. .++. +..|...++.+.++++++.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~-~~r~~~~--~~------~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~ 75 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVI-ADIKPAR--AR------LAALEIG-PAAIAVSLDVTRQDSIDRIVAAAV 75 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EcCCHHH--HH------HHHHHhC-CceEEEEccCCCHHHHHHHHHHHH
Confidence 356999999999999999999999999774 3433211 10 1111111 1222 3446677778888777776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. .+..+|. ..|.
T Consensus 76 ~~~~~id~li~-~ag~ 90 (257)
T PRK07067 76 ERFGGIDILFN-NAAL 90 (257)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 54 5777777 5443
No 496
>PRK14030 glutamate dehydrogenase; Provisional
Probab=89.54 E-value=0.86 Score=42.72 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=60.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-------cCCCCCCe-E-------------Ec-----Ccc---ccccHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGGT-E-------------HL-----GLP---VFNSVA 108 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-------VdP~~~G~-e-------------i~-----GvP---Vy~sl~ 108 (181)
..+|+|+|+ |+.|+..++.+.+.|.+||+. .||+.... . +. ++| .. +-+
T Consensus 228 g~~vaIQGf-GnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~ 305 (445)
T PRK14030 228 GKTVAISGF-GNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGK 305 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCc
Confidence 478999999 999999999999999999984 33331110 0 00 111 11 122
Q ss_pred HHhhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 109 EAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 109 e~~~~~~~DVaIdfVPp-~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
++. ..+|||.+-+--. .--.++++...+.+.+.|+--+-|....+..++.
T Consensus 306 ~~~-~~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL 356 (445)
T PRK14030 306 KPW-EQKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKF 356 (445)
T ss_pred cce-eccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 222 2467776644322 2234566677778999999866665555555554
No 497
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.54 E-value=1.2 Score=38.90 Aligned_cols=85 Identities=16% Similarity=0.259 Sum_probs=53.6
Q ss_pred eEEEEccCCCCcchhhHHHHHhCC--eEe-eecCCCCCCeEEc---------C--ccccc-cHHHHhhccCCcEEEEeeC
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGT--KMV-GGVTPKKGGTEHL---------G--LPVFN-SVAEAKAETKANASVIYVP 124 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~--~IV-agVdP~~~G~ei~---------G--vPVy~-sl~e~~~~~~~DVaIdfVP 124 (181)
||.|+|+ |..|+.++..+...|. +|+ ..+++.+...... + ..++. +.++ .+ ++|++|+++.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~--~aDIVIitag 77 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CK--DADIVVITAG 77 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hC--CCCEEEEccC
Confidence 7999998 9999999988888774 444 2344443221111 1 12222 3333 34 7999999987
Q ss_pred hH----------------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 125 PP----------------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 125 p~----------------~a~~~~~eaie~GIk~IV~iTt 148 (181)
.. ..++.++...+++-+.++++.+
T Consensus 78 ~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 78 APQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 62 2677777777888777665443
No 498
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=89.53 E-value=2.6 Score=34.17 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=62.1
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh----ccCCcEEEEeeC-hHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA----ETKANASVIYVP-PPFAAAA 131 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~----~~~~DVaIdfVP-p~~a~~~ 131 (181)
.++.|+|.|+++-+|+.+.+.+.+.|.+++......... ....+.+..+ ..-.....|.+. ++.+...
T Consensus 4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~ 76 (251)
T COG1028 4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEE-------AAEALAAAIKEAGGGRAAAVAADVSDDEESVEAL 76 (251)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchh-------hHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHH
Confidence 346789999999999999999998899966443322210 1111111111 111223378886 8999999
Q ss_pred HHHHHHc--CCCEEEEeCCCC-----CHHHHHHHHHHhhhhchhc
Q 030220 132 IMEAMEA--ELDLVVCITEGI-----PQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~-----~~ed~~~l~~~ak~ipv~~ 169 (181)
++.+.+. ++..+++ ..|. +.++... +++.+.+.+.+
T Consensus 77 ~~~~~~~~g~id~lvn-nAg~~~~~~~~~~~~~-~~~~~~~~~n~ 119 (251)
T COG1028 77 VAAAEEEFGRIDILVN-NAGIAGPDAPLEELTE-EDWDRVIDVNL 119 (251)
T ss_pred HHHHHHHcCCCCEEEE-CCCCCCCCCChhhCCH-HHHHHHHHHhH
Confidence 9888874 4886666 7775 3333322 44444444443
No 499
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.52 E-value=2.5 Score=34.93 Aligned_cols=81 Identities=9% Similarity=0.023 Sum_probs=53.2
Q ss_pred ceEEEEccC--CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGat--GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~ea 135 (181)
+.++|.|++ +.+|+.+++.+.+.|.+|+.. +.+... -..+++... .++ -+..|.+.++.+.++++++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~-~r~~~~--------~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYT-YQNDRM--------KKSLQKLVD-EEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe-cCchHH--------HHHHHhhcc-CceeEEeCCCCCHHHHHHHHHHH
Confidence 568889998 689999999999999997743 332110 011222211 112 2446778899999999988
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. .+..+|+ ..|+
T Consensus 78 ~~~~g~iD~lv~-nAg~ 93 (252)
T PRK06079 78 KERVGKIDGIVH-AIAY 93 (252)
T ss_pred HHHhCCCCEEEE-cccc
Confidence 764 4777777 5554
No 500
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=89.52 E-value=1 Score=40.55 Aligned_cols=84 Identities=18% Similarity=0.145 Sum_probs=50.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE-Ec-Cccc-c--cc---HHHHhhccCCcEEEEeeChHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HL-GLPV-F--NS---VAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e-i~-GvPV-y--~s---l~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+||+|+|. |..++.+++.+.+.++.+...++|...+.. .. ...+ . .+ +.++.+++++|.++....-.....
T Consensus 1 ~kiliiG~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~l~~~ 79 (423)
T TIGR00877 1 MKVLVIGN-GGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAISITDIEALVEFAKKKKIDLAVIGPEAPLVLG 79 (423)
T ss_pred CEEEEECC-ChHHHHHHHHHHhCCCccEEEEECCCHHHhhhcccccccCCCCCHHHHHHHHHHhCCCEEEECCchHHHHH
Confidence 47999999 888999999888866443323444433311 11 1111 1 23 555666678888875543334455
Q ss_pred HHHHHHHcCCCEE
Q 030220 131 AIMEAMEAELDLV 143 (181)
Q Consensus 131 ~~~eaie~GIk~I 143 (181)
+++.+-+.|++.+
T Consensus 80 ~~~~l~~~gi~~~ 92 (423)
T TIGR00877 80 LVDALEEAGIPVF 92 (423)
T ss_pred HHHHHHHCCCeEE
Confidence 6777777888644
Done!